Metagenome Family F078492

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078492
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	59 residues
Representative Sequence	VEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF
Number of Associated Samples	96
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.03 %
% of genes near scaffold ends (potentially truncated)	89.66 %
% of genes from short scaffolds (< 2000 bps)	89.66 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.828 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (45.690 % of family members)
Environment Ontology (ENVO)	Unclassified (48.276 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.99% β-sheet: 22.47% Coil/Unstructured: 68.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00589	Phage_integrase	24.14
PF04956	TrbC	3.45
PF01464	SLT	2.59
PF01979	Amidohydro_1	0.86
PF01842	ACT	0.86
PF03551	PadR	0.86
PF02596	DUF169	0.86
PF03807	F420_oxidored	0.86
PF12681	Glyoxalase_2	0.86
PF12704	MacB_PCD	0.86
PF08706	D5_N	0.86
PF16793	RepB_primase	0.86
PF07238	PilZ	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	3.45
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.86
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.86
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.86
COG2043	Uncharacterized conserved protein, DUF169 family	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.83 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.83 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.83 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	47.41 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	33.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.90 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.62 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.90 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.90 %
Unclassified	root	N/A	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.62 %
Unclassified	root	N/A	5.17 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1.72 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	33.62 %
Unclassified	root	N/A	5.17 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	1.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002914\|JGI25617J43924_10094531	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300002914\|JGI25617J43924_10328039	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300002917\|JGI25616J43925_10036129	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2174	Open in IMG/M
3300005536\|Ga0070697_101258720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	660	Open in IMG/M
3300005569\|Ga0066705_10683900	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300005574\|Ga0066694_10159422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300005602\|Ga0070762_10195230	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300006028\|Ga0070717_12042636	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300006794\|Ga0066658_10764152	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300006871\|Ga0075434_101316097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	733	Open in IMG/M
3300006914\|Ga0075436_101124942	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300007076\|Ga0075435_101145831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300007265\|Ga0099794_10194845	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300007265\|Ga0099794_10599882	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300009038\|Ga0099829_10229196	All Organisms → cellular organisms → Bacteria	1510	Open in IMG/M
3300009038\|Ga0099829_10726803	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300009088\|Ga0099830_10181978	All Organisms → cellular organisms → Bacteria → Acidobacteria	1635	Open in IMG/M
3300009088\|Ga0099830_10947002	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300010048\|Ga0126373_10625319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300010335\|Ga0134063_10285268	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300010359\|Ga0126376_12100454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300010360\|Ga0126372_11222430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300010361\|Ga0126378_10802334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1051	Open in IMG/M
3300010376\|Ga0126381_105139010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300010396\|Ga0134126_12319583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300011269\|Ga0137392_10164647	All Organisms → cellular organisms → Bacteria → Acidobacteria	1798	Open in IMG/M
3300011270\|Ga0137391_10182211	All Organisms → cellular organisms → Bacteria → Acidobacteria	1830	Open in IMG/M
3300011270\|Ga0137391_10338218	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300012096\|Ga0137389_11326037	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300012189\|Ga0137388_10085680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2670	Open in IMG/M
3300012202\|Ga0137363_10065998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2646	Open in IMG/M
3300012202\|Ga0137363_11138349	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300012202\|Ga0137363_11309945	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300012203\|Ga0137399_11167048	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300012203\|Ga0137399_11219448	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300012205\|Ga0137362_10063609	All Organisms → cellular organisms → Bacteria	3039	Open in IMG/M
3300012207\|Ga0137381_10758402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300012208\|Ga0137376_10515906	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1036	Open in IMG/M
3300012210\|Ga0137378_10245320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1667	Open in IMG/M
3300012361\|Ga0137360_10307421	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300012361\|Ga0137360_10439432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M
3300012361\|Ga0137360_11861712	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012362\|Ga0137361_11014475	Not Available	749	Open in IMG/M
3300012362\|Ga0137361_11422465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300012582\|Ga0137358_10046356	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2888	Open in IMG/M
3300012582\|Ga0137358_10338246	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300012582\|Ga0137358_10965113	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012683\|Ga0137398_10624290	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300012685\|Ga0137397_10393158	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300012918\|Ga0137396_11017106	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300012918\|Ga0137396_11029307	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012923\|Ga0137359_10597479	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300012924\|Ga0137413_10380673	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300012924\|Ga0137413_10592090	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300012924\|Ga0137413_10784914	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300012925\|Ga0137419_10022891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	3686	Open in IMG/M
3300012925\|Ga0137419_10603289	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300012927\|Ga0137416_10580475	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300012929\|Ga0137404_11373077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300012930\|Ga0137407_10813099	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300012971\|Ga0126369_12784720	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300014325\|Ga0163163_10339138	All Organisms → cellular organisms → Bacteria → Acidobacteria	1558	Open in IMG/M
3300015052\|Ga0137411_1080586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300015053\|Ga0137405_1344657	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1068	Open in IMG/M
3300015241\|Ga0137418_10199523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1730	Open in IMG/M
3300015242\|Ga0137412_10268398	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300015264\|Ga0137403_10603266	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300016294\|Ga0182041_11409924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300016422\|Ga0182039_10226976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1507	Open in IMG/M
3300017943\|Ga0187819_10556629	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300017955\|Ga0187817_10889763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300017966\|Ga0187776_10007634	All Organisms → cellular organisms → Bacteria → Acidobacteria	5724	Open in IMG/M
3300018007\|Ga0187805_10591338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300020199\|Ga0179592_10150842	Not Available	1063	Open in IMG/M
3300020199\|Ga0179592_10250385	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300020580\|Ga0210403_11112884	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300020580\|Ga0210403_11428631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300020581\|Ga0210399_10000281	All Organisms → cellular organisms → Bacteria → Acidobacteria	41495	Open in IMG/M
3300021086\|Ga0179596_10269751	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300021168\|Ga0210406_11356632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300021170\|Ga0210400_10046267	All Organisms → cellular organisms → Bacteria	3385	Open in IMG/M
3300021401\|Ga0210393_10237624	All Organisms → cellular organisms → Bacteria → Acidobacteria	1477	Open in IMG/M
3300021403\|Ga0210397_10159407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1583	Open in IMG/M
3300021404\|Ga0210389_10199228	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300021477\|Ga0210398_10003737	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14472	Open in IMG/M
3300021479\|Ga0210410_11354518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300021560\|Ga0126371_10053290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3878	Open in IMG/M
3300024325\|Ga0247678_1050276	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300026095\|Ga0207676_11393011	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300026327\|Ga0209266_1175059	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300026490\|Ga0257153_1000957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	5149	Open in IMG/M
3300026551\|Ga0209648_10678892	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300026557\|Ga0179587_10214058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1224	Open in IMG/M
3300026557\|Ga0179587_10354797	Not Available	951	Open in IMG/M
3300027562\|Ga0209735_1053350	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300027684\|Ga0209626_1152418	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300027854\|Ga0209517_10358390	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300027875\|Ga0209283_10420541	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300027882\|Ga0209590_10427229	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300027908\|Ga0209006_10925000	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300028047\|Ga0209526_10846124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300031122\|Ga0170822_13305736	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300031545\|Ga0318541_10284768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300031668\|Ga0318542_10211306	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300031682\|Ga0318560_10341819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300031720\|Ga0307469_10724098	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300031740\|Ga0307468_101074678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300031753\|Ga0307477_10353192	Not Available	1011	Open in IMG/M
3300031823\|Ga0307478_11562677	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031910\|Ga0306923_10348869	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1688	Open in IMG/M
3300031942\|Ga0310916_10470809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300031954\|Ga0306926_11232622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	877	Open in IMG/M
3300032205\|Ga0307472_100543169	Not Available	1013	Open in IMG/M
3300032828\|Ga0335080_10597894	Not Available	1160	Open in IMG/M
3300032895\|Ga0335074_11534175	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300032954\|Ga0335083_10785002	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.69%
Host-Associated	Host-Associated	4.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.10%
Plants	Host-Associated → Plants	4.31%
Aquatic	Environmental → Aquatic	2.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.10%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.86%
Roots	Host-Associated → Plants → Roots	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.62%
Loam	Environmental → Terrestrial → Soil → Loam	6.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	54.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.45%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	45.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.03%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.45%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_100945312	3300002914	Grasslands Soil	ATTIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAV*
JGI25617J43924_103280392	3300002914	Grasslands Soil	ATTIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAQESNEAAL*
JGI25616J43925_100361293	3300002917	Grasslands Soil	PNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAVV*
Ga0070697_1012587202	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	KSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEPAL*
Ga0066705_106839002	3300005569	Soil	VSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0066694_101594222	3300005574	Soil	MSPRHAHVLVEGSLVSSTYEQLNGKGKKSKTSKIRRGQSAPIVVRRLDRGEPEPNAPAQAPESNEAAF*
Ga0070762_101952303	3300005602	Soil	TIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEGAF*
Ga0070717_120426361	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IYEQPNGKGKKSKATKITSWSIRADVVRRLDRNEQEPEAPASGPATESDEAPL*
Ga0066658_107641522	3300006794	Soil	TYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0075434_1013160971	3300006871	Populus Rhizosphere	VLVEGSLVSSTYEQANGKGKKAKTAKITSWSIRAEVLRKLDRGEPEPDAPTAAEAPESNG
Ga0075436_1011249422	3300006914	Populus Rhizosphere	NGKGKNSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0075435_1011458312	3300007076	Populus Rhizosphere	VLVEGSLVSSTYEQANGKGKKAKTAKITSWSIRAEVLRKLDRGEPEPDAPTAAEAPESNGAPF*
Ga0099794_101948452	3300007265	Vadose Zone Soil	LVSSTYEQPNGKGKKSKTTKITSWSIRADVVRKLDRNEQEPEAPASGPATESDEATF*
Ga0099794_105998822	3300007265	Vadose Zone Soil	STYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQAPESNEASL*
Ga0099829_102291961	3300009038	Vadose Zone Soil	TYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQAPESNEASL*
Ga0099829_107268032	3300009038	Vadose Zone Soil	VEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0099830_101819781	3300009088	Vadose Zone Soil	TSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0099830_109470021	3300009088	Vadose Zone Soil	KKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0126373_106253192	3300010048	Tropical Forest Soil	QVALVRRGHANGKRKKSKAAKLTSWSVRADVVRKLDRGEPEPEAPATVPPPEFEEARF*
Ga0134063_102852681	3300010335	Grasslands Soil	TIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0126376_121004541	3300010359	Tropical Forest Soil	HVLVEGSLVSSTYEQPNGKGKKSKTTKITSWSIRADVVRKLDRNEQELQTPPREPTAESAEAPF*
Ga0126372_112224302	3300010360	Tropical Forest Soil	RVVATIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTMKITSWSIRADVVRKLDRNEQELQTPPSEPTAEFDEAPF*
Ga0126378_108023341	3300010361	Tropical Forest Soil	LILVSSTCEQPNGKGKKSKAAKITSWSIRADVVRRLDRNEQEPQTPPSEPTAESDEAPF*
Ga0126381_1051390101	3300010376	Tropical Forest Soil	VLIEGSLVSSTYEKADGKGKKTNGVKLTSWSIRADAVRKLDRGEPEPAAPVAP
Ga0134126_123195831	3300010396	Terrestrial Soil	TIKKGAHVLVEGSLISSTYEQPNGKGKKAKTSKITSWSVRADVVRKLDRGEPEPNAPAPAQAPEFNEAVF*
Ga0137392_101646472	3300011269	Vadose Zone Soil	AHVLVEGSLVSSTYEQPNGKGKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQTPESNEAAL*
Ga0137391_101822112	3300011270	Vadose Zone Soil	LAERVATTIKKGAHALVEVSLVSSTYEQPNGKGKKSKTSKITSWLVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137391_103382181	3300011270	Vadose Zone Soil	TIKKGAHVLVEGSLVSSTYEQPNGKGKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQTPESNEAAL*
Ga0137389_113260371	3300012096	Vadose Zone Soil	KKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPTQAPESNEAAL*
Ga0137388_100856801	3300012189	Vadose Zone Soil	NGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137363_100659983	3300012202	Vadose Zone Soil	VLVEGSLVSSTYEQPNGKGKKSKTTKITSWSIRADVVRRLDRGEAEPQTSASETSDHSSESSEAGTF*
Ga0137363_111383491	3300012202	Vadose Zone Soil	KGKKSKTSKITSWSVRADVVRKLDRSEPEPQAPDPEPTSDSSERATF*
Ga0137363_113099451	3300012202	Vadose Zone Soil	STYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137399_111670482	3300012203	Vadose Zone Soil	IIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTTKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0137399_112194481	3300012203	Vadose Zone Soil	TIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVLRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0137362_100636091	3300012205	Vadose Zone Soil	SSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137381_107584022	3300012207	Vadose Zone Soil	IYEQPNGKSKKSKTTRITSWSIRADVVRRLDRNEQQPEEPASGPAPESHEAPV*
Ga0137376_105159061	3300012208	Vadose Zone Soil	HVARTIKKGAHVLVEGSLVSSTYEVANGKGKKAKGTKVTSWSIRADVVRKLDRNEQEPAAPASVPATESDEAPF*
Ga0137378_102453202	3300012210	Vadose Zone Soil	AIKKGAHVLVEGELISSIYEQPNGKSKKSKTTRITSWSIRADVVRRLDRNEQQPEEPASGPAPESHEAPV*
Ga0137360_103074211	3300012361	Vadose Zone Soil	TYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQTPESNEAAL*
Ga0137360_104394321	3300012361	Vadose Zone Soil	TYEQSNGKSKKSKTSKITLWSIRADVVRKLDRNEPEPEAPATTQPSDPNEPPF*
Ga0137360_118617121	3300012361	Vadose Zone Soil	HVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0137361_110144752	3300012362	Vadose Zone Soil	SSTYEQSNGKSKKSKTSKITLWSIRADVVRELDRNEPEPEAPATTQPSDPNEPPF*
Ga0137361_114224652	3300012362	Vadose Zone Soil	KKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAEAPESNEAAF*
Ga0137358_100463565	3300012582	Vadose Zone Soil	ISSTYEQANGKGKTAKTAKITSWSIRADVVRKLDRNEPEPEAPATTQASDPSEPPF*
Ga0137358_103382461	3300012582	Vadose Zone Soil	ITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAV*
Ga0137358_109651132	3300012582	Vadose Zone Soil	EGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQALESNEASL*
Ga0137398_106242901	3300012683	Vadose Zone Soil	SKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESKEAAF*
Ga0137397_103931581	3300012685	Vadose Zone Soil	SWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137396_110171062	3300012918	Vadose Zone Soil	STYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0137396_110293071	3300012918	Vadose Zone Soil	GAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQAPESNEASL*
Ga0137359_105974791	3300012923	Vadose Zone Soil	KGKKTKTSKITSWSIRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137413_103806731	3300012924	Vadose Zone Soil	PNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL*
Ga0137413_105920901	3300012924	Vadose Zone Soil	QPNGKGKKSKTSKITSWSVRAGVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0137413_107849141	3300012924	Vadose Zone Soil	GAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQVPESNEASL*
Ga0137419_100228915	3300012925	Vadose Zone Soil	STYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPQASASETSEHSPESSEGGTF*
Ga0137419_106032891	3300012925	Vadose Zone Soil	KSKTSKITSWSARADVVRRLGRGEPEPNAPAPAQAPESNEAAL*
Ga0137416_105804752	3300012927	Vadose Zone Soil	IKKGAHVLVEGSLVSSTYEQPNGKSKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESKEAAF*
Ga0137404_113730772	3300012929	Vadose Zone Soil	AIKKGAHVLVEGELISSIYEQPNGKSKKSKTTRITSWSIRADVVRRLDRNDQQPEEPASGPAPESHEAPF*
Ga0137407_108130992	3300012930	Vadose Zone Soil	GAHVLVEGSLVSSTYEQPNGKGKKSKTTKITSWSVRADVVRRLDRGEPEPAQAPESNEAAL*
Ga0126369_127847202	3300012971	Tropical Forest Soil	VEGSLVSSTYEQPNGKGKKSKGVKITSWSIRADVVRKLDRGEPEPEAPASVPAPESDEAHF*
Ga0163163_103391382	3300014325	Switchgrass Rhizosphere	STIKKGAHVLAEGSLISSTSEQANGNGKKAKAAKIPSWSIRADVVRRLDRGGPEPGAATPAPAEAESPDASDAPTF*
Ga0137411_10805861	3300015052	Vadose Zone Soil	KKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAV*
Ga0137405_13446572	3300015053	Vadose Zone Soil	EQPNGKGKKSKTAKVTSWSIRADVVRKLDRNEPEPEAPATTQASDPSEPPF*
Ga0137418_101995231	3300015241	Vadose Zone Soil	VEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPQASASETSEHSPESSEGGTF*
Ga0137412_102683983	3300015242	Vadose Zone Soil	SLVSSTYEQPNGKGKKSKTTKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF*
Ga0137403_106032661	3300015264	Vadose Zone Soil	SSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQAPESNEASL*
Ga0182041_114099241	3300016294	Soil	MKKGAHVLVEGSLVSSTYEQLNGKGKKSMTTKITSWSIRADVVHKLDRNEQELQSPTGGITADSSETPF
Ga0182039_102269762	3300016422	Soil	LVSSTYEQPNGKGQKSKAMKITSWSIRADVVRKLDRNEQELPTPPSETTAESDEAPF
Ga0187819_105566291	3300017943	Freshwater Sediment	EQPNGKGKKSKTTKITSWSIRADVVRKLDRNEQEPEAPASGPATESDNAPF
Ga0187817_108897631	3300017955	Freshwater Sediment	SLISSTYEGPNGKGKKAAAQKITSWSIRADVVRQLYHGEPEPDAAPATEAATPGGEIPF
Ga0187776_100076341	3300017966	Tropical Peatland	VPVEGTLVSSIYEQPNGKSKKSKAAKITSWSIRADVVRKLDRGEPEPDASAATQAPASNEAAF
Ga0187805_105913381	3300018007	Freshwater Sediment	ARTIKKGAHVLVEGSLVSSTYEQPNGKGKKSKTAKITSWSIRADVVRKLDRSEQQPEAPATGQGAESDEAPF
Ga0179592_101508421	3300020199	Vadose Zone Soil	SKTSKITSWSVRADVVRKLDRGEPEPNAPVPAQAPESNEAAF
Ga0179592_102503851	3300020199	Vadose Zone Soil	VSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLGRGEPEPNAPAPAQAPESNEAAV
Ga0210403_111128842	3300020580	Soil	LVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNASAPTQAPESNEAAV
Ga0210403_114286311	3300020580	Soil	LVEGSLVSSTYEQANGKGKKAKTAKITSWSIRADVVRKLDRNEPEPEAPATMQASDPSEPPF
Ga0210399_1000028122	3300020581	Soil	MRSSGSLVSSTYERPNVKGKKATAEKITSWSIRADVVHKLDRGEPEPEAAPATEAAAPSDAPF
Ga0179596_102697511	3300021086	Vadose Zone Soil	KGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQALESNEASL
Ga0210406_113566321	3300021168	Soil	AIKKGAHVLIEGSLVSSTYEQSNGKSKKSKTSKITLWSIRADVVRKLDRNEPEPEVPATPQASDPSEPPF
Ga0210400_100462673	3300021170	Soil	LVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL
Ga0210393_102376242	3300021401	Soil	VLVEGELVSSTYERPNGKGKKSETTRITSWSVRADVVRRLDRGEPQPETAPATETADPDAIPF
Ga0210397_101594072	3300021403	Soil	VLNSIKKGAHVLVEGSLISSTYEQANGKAKKSKTAKITSWSIRADVVRRLDRNEQEPDAPASESSEPSSTAAEGVTF
Ga0210389_101992281	3300021404	Soil	NGKGKKSKISKITSRSVRADVVRRLDRGEPEPNAPAPAHAPESNEAAF
Ga0210398_100037379	3300021477	Soil	VLVEGSLISSTYEQPNGKGKKAKTAKITSWSIRADVVRRLDRGEPEPQTPASEASDHSPESSEGGTF
Ga0210410_113545182	3300021479	Soil	VEGSLISSTYEQANGKAKKSKTAKITSWSIRADVVRRLDRNEQEPDAPASESSEPSSTAAEGVTF
Ga0126371_100532902	3300021560	Tropical Forest Soil	LILVSSTCEQPNGKGKKSKAAKITSWSIRADVVRRLDRNEQEPQTPPSEPTAESDEAPF
Ga0247678_10502761	3300024325	Soil	MRCSDLSTTTIKKGAHALVEGSLVSPTYEQPNGKGKKSKASKITSWSVRADVVRRLDRGEPEPNAPAPGQAPESTEAAF
Ga0207676_113930111	3300026095	Switchgrass Rhizosphere	SEQANGNGKKAKAAKIPSWSIRADVVRRLDRGGPEPGAATPAPAEAESPDASDAPTF
Ga0209266_11750591	3300026327	Soil	NGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF
Ga0257153_10009575	3300026490	Soil	VLVEGSLVSSTYEQPNGKSKKNKPVKVTSWTIRADVVRKLDRSEPEPQAPDPEPTSDSSERATF
Ga0209648_106788921	3300026551	Grasslands Soil	VSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL
Ga0179587_102140582	3300026557	Vadose Zone Soil	LTNVKKGAHVLVEGSLISSTYEQPNGKSKKNKPVKVTSWTIRADVVRKLDRSEPEPQAPDQEPTSDSSERATF
Ga0179587_103547971	3300026557	Vadose Zone Soil	QPNGKGKKSKTSKITSWSVRADVVRKLDRGEPEPNAPVPAQAPESNEAAF
Ga0209735_10533501	3300027562	Forest Soil	YEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPTQAPESNEAAL
Ga0209626_11524181	3300027684	Forest Soil	YEQANGKGKKSKAAKITSWSIRADVVRKLDRNEQEPEAPASGPAMESDEATF
Ga0209517_103583902	3300027854	Peatlands Soil	SLVSSTYEVSNGKGKKAKGTKITSWSIRADVVRKLDRNEQEPQAPATAPATESDEATF
Ga0209283_104205411	3300027875	Vadose Zone Soil	TSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAL
Ga0209590_104272291	3300027882	Vadose Zone Soil	YLPSNGKSKKAKAAKITSWSIRADVVRKLDRGEPEPDASAATAAPESNEAAF
Ga0209006_109250001	3300027908	Forest Soil	LVEGSLVSSTYEQPNGKGKKSKTSKTTSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF
Ga0209526_108461241	3300028047	Forest Soil	HVLVEGSLISSTYEQPNGKGKKSKTGKITSWSIRADVVRKLDRNEQEPEPPASGPAPESGEAAF
Ga0170822_133057361	3300031122	Forest Soil	IKKGAHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESKEAAF
Ga0318541_102847681	3300031545	Soil	LILVNSTYEQPNGKGKKSKAAKITSWSIRADVVRRLDRNEQEPQTPPGEPTAESDEAPF
Ga0318542_102113061	3300031668	Soil	HVLVEGSLVSSTYEQPNGKGKKSKTTKITSWSIRADDVRKLDRNEQELQTPPSEPTAESDEAPF
Ga0318560_103418192	3300031682	Soil	IKKGAHVLVEGSLVSSTYEQPNGKGKKSKTMKITSWSIRADVVRKLDRNERELPTAPSEPTAESDEAPF
Ga0307469_107240982	3300031720	Hardwood Forest Soil	TYEQANGKGKRAKTAKITSWSIRADVVRRLDRGEPEPQAASSEQAAESDQAPF
Ga0307468_1010746781	3300031740	Hardwood Forest Soil	VLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAQAPESNEAS
Ga0307477_103531922	3300031753	Hardwood Forest Soil	EQSNGKSKKSKTSKITVWSIRADVVRKLDRNEPEPEAPATTQPSDRNEPPF
Ga0307478_115626772	3300031823	Hardwood Forest Soil	AHVLVEGSLVSSTYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQAPESNEAAF
Ga0306923_103488691	3300031910	Soil	YEQPNGKGQKSKAMKITSWSIRADVVRKLDRNEQELPTPPSETTAESDEAPF
Ga0310916_104708092	3300031942	Soil	TYEQPNGKGKKSKTMKITSWSIRADVVRKLDRNERELPTAPSEPTAESDEAPF
Ga0306926_112326222	3300031954	Soil	GAHVLVEGSLVSSTYEQPNGKGQKSKAMKITSWSIRADVVRKLDRNEQELPTPPSETTAESDEAPF
Ga0307472_1005431693	3300032205	Hardwood Forest Soil	NGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPAPAQTPESNEAAL
Ga0335080_105978941	3300032828	Soil	VLVEGSLVSSTYEVANGKVKKAKGTKVTSWSIRADVVSKLDRNEQEPEAPASGPATESDEARF
Ga0335074_115341752	3300032895	Soil	TYEQPNGKGKKSKTSKITSWSVRADVVRRLDRGEPEPNAPALAQVRESNEAAF
Ga0335083_107850022	3300032954	Soil	VEGSLASSPYERAAGKGKKSENLKITSWSVRADAVRKLDRGEPEPQPPAADPDDAPASTNGADY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078492

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences