NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F078522

Metagenome Family F078522

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078522
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 54 residues
Representative Sequence MTLSGREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Number of Associated Samples 76
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 36.21 %
% of genes near scaffold ends (potentially truncated) 33.62 %
% of genes from short scaffolds (< 2000 bps) 65.52 %
Associated GOLD sequencing projects 56
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (90.517 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(49.138 % of family members)
Environment Ontology (ENVO) Unclassified
(84.483 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(84.483 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 66.67%    β-sheet: 0.00%    Coil/Unstructured: 33.33%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF04019DUF359 38.79
PF02800Gp_dh_C 20.69
PF02900LigB 10.34
PF07690MFS_1 4.31
PF00535Glycos_transf_2 1.72
PF03479PCC 1.72
PF08753NikR_C 0.86
PF14907NTP_transf_5 0.86
PF01663Phosphodiest 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG1909Archaeal dephospho-CoA kinaseCoenzyme transport and metabolism [H] 38.79
COG0057Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenaseCarbohydrate transport and metabolism [G] 20.69
COG1661Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domainGeneral function prediction only [R] 1.72
COG0864Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domainTranscription [K] 0.86

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002558|JGI25385J37094_10025782All Organisms → cellular organisms → Archaea2090Open in IMG/M
3300002558|JGI25385J37094_10030583All Organisms → cellular organisms → Archaea1899Open in IMG/M
3300002558|JGI25385J37094_10159933All Organisms → cellular organisms → Archaea603Open in IMG/M
3300002560|JGI25383J37093_10021202All Organisms → cellular organisms → Archaea2177Open in IMG/M
3300002561|JGI25384J37096_10163496All Organisms → cellular organisms → Archaea692Open in IMG/M
3300002562|JGI25382J37095_10026348All Organisms → cellular organisms → Archaea2275Open in IMG/M
3300002562|JGI25382J37095_10077165All Organisms → cellular organisms → Archaea1230Open in IMG/M
3300002912|JGI25386J43895_10050572All Organisms → cellular organisms → Archaea1194Open in IMG/M
3300002912|JGI25386J43895_10126691All Organisms → cellular organisms → Archaea632Open in IMG/M
3300005167|Ga0066672_10334607All Organisms → cellular organisms → Archaea987Open in IMG/M
3300005176|Ga0066679_10222048All Organisms → cellular organisms → Archaea1210Open in IMG/M
3300005176|Ga0066679_10427163All Organisms → cellular organisms → Archaea868Open in IMG/M
3300005177|Ga0066690_10695104All Organisms → cellular organisms → Archaea674Open in IMG/M
3300005178|Ga0066688_10137716All Organisms → cellular organisms → Archaea1521Open in IMG/M
3300005180|Ga0066685_10019640All Organisms → cellular organisms → Archaea4021Open in IMG/M
3300005180|Ga0066685_10168672All Organisms → cellular organisms → Archaea1494Open in IMG/M
3300005180|Ga0066685_10415578All Organisms → cellular organisms → Archaea934Open in IMG/M
3300005181|Ga0066678_10023525All Organisms → cellular organisms → Archaea3266Open in IMG/M
3300005186|Ga0066676_10003128All Organisms → cellular organisms → Archaea7274Open in IMG/M
3300005186|Ga0066676_10700589All Organisms → cellular organisms → Archaea689Open in IMG/M
3300005187|Ga0066675_10419279All Organisms → cellular organisms → Archaea991Open in IMG/M
3300005447|Ga0066689_10884332All Organisms → cellular organisms → Archaea553Open in IMG/M
3300005451|Ga0066681_10000465All Organisms → cellular organisms → Archaea13332Open in IMG/M
3300005540|Ga0066697_10068212All Organisms → cellular organisms → Archaea2038Open in IMG/M
3300005552|Ga0066701_10050309All Organisms → cellular organisms → Archaea2285Open in IMG/M
3300005554|Ga0066661_10069521All Organisms → cellular organisms → Archaea2054Open in IMG/M
3300005554|Ga0066661_10164535All Organisms → cellular organisms → Archaea1363Open in IMG/M
3300005556|Ga0066707_10160002All Organisms → cellular organisms → Archaea1432Open in IMG/M
3300005557|Ga0066704_10284177All Organisms → cellular organisms → Archaea1121Open in IMG/M
3300005557|Ga0066704_10437163All Organisms → cellular organisms → Archaea865Open in IMG/M
3300005558|Ga0066698_10185158All Organisms → cellular organisms → Archaea1420Open in IMG/M
3300005558|Ga0066698_10306562All Organisms → cellular organisms → Archaea1100Open in IMG/M
3300005559|Ga0066700_10338266All Organisms → cellular organisms → Archaea1063Open in IMG/M
3300005568|Ga0066703_10151760All Organisms → cellular organisms → Archaea1392Open in IMG/M
3300005568|Ga0066703_10184187All Organisms → cellular organisms → Archaea1263Open in IMG/M
3300005574|Ga0066694_10015907All Organisms → cellular organisms → Archaea3266Open in IMG/M
3300006034|Ga0066656_10726246All Organisms → cellular organisms → Archaea637Open in IMG/M
3300006034|Ga0066656_10779741All Organisms → cellular organisms → Archaea612Open in IMG/M
3300006034|Ga0066656_11051122All Organisms → cellular organisms → Archaea523Open in IMG/M
3300006791|Ga0066653_10129888All Organisms → cellular organisms → Archaea1195Open in IMG/M
3300006796|Ga0066665_10202129All Organisms → cellular organisms → Archaea1543Open in IMG/M
3300006797|Ga0066659_11124133All Organisms → cellular organisms → Archaea657Open in IMG/M
3300006800|Ga0066660_10232075All Organisms → cellular organisms → Archaea1430Open in IMG/M
3300007258|Ga0099793_10136962All Organisms → cellular organisms → Archaea1154Open in IMG/M
3300007265|Ga0099794_10231674All Organisms → cellular organisms → Archaea950Open in IMG/M
3300009038|Ga0099829_10323672All Organisms → cellular organisms → Archaea1267Open in IMG/M
3300009038|Ga0099829_10334843All Organisms → cellular organisms → Archaea1245Open in IMG/M
3300009089|Ga0099828_10003143All Organisms → cellular organisms → Archaea11523Open in IMG/M
3300009090|Ga0099827_11396856All Organisms → cellular organisms → Archaea609Open in IMG/M
3300009137|Ga0066709_100261861All Organisms → cellular organisms → Archaea2323Open in IMG/M
3300009137|Ga0066709_100344903All Organisms → cellular organisms → Archaea2044Open in IMG/M
3300009137|Ga0066709_100830281All Organisms → cellular organisms → Archaea1341Open in IMG/M
3300010303|Ga0134082_10264330All Organisms → cellular organisms → Archaea715Open in IMG/M
3300010323|Ga0134086_10058775All Organisms → cellular organisms → Archaea1314Open in IMG/M
3300010333|Ga0134080_10091960All Organisms → cellular organisms → Archaea1239Open in IMG/M
3300010333|Ga0134080_10578462All Organisms → cellular organisms → Archaea544Open in IMG/M
3300010335|Ga0134063_10301360All Organisms → cellular organisms → Archaea771Open in IMG/M
3300010336|Ga0134071_10409870All Organisms → cellular organisms → Archaea691Open in IMG/M
3300012189|Ga0137388_10077099All Organisms → cellular organisms → Archaea2797Open in IMG/M
3300012206|Ga0137380_10271397All Organisms → cellular organisms → Archaea1525Open in IMG/M
3300012357|Ga0137384_10925366All Organisms → cellular organisms → Archaea702Open in IMG/M
3300012361|Ga0137360_10246262All Organisms → cellular organisms → Archaea1466Open in IMG/M
3300012918|Ga0137396_10010864All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes5566Open in IMG/M
3300012918|Ga0137396_10147828All Organisms → cellular organisms → Archaea1709Open in IMG/M
3300012918|Ga0137396_10720677All Organisms → cellular organisms → Archaea735Open in IMG/M
3300012925|Ga0137419_11390453All Organisms → cellular organisms → Archaea592Open in IMG/M
3300012927|Ga0137416_11681452All Organisms → cellular organisms → Archaea579Open in IMG/M
3300012975|Ga0134110_10037283All Organisms → cellular organisms → Archaea1909Open in IMG/M
3300017656|Ga0134112_10154006All Organisms → cellular organisms → Archaea885Open in IMG/M
3300018431|Ga0066655_10008962All Organisms → cellular organisms → Bacteria4250Open in IMG/M
3300018431|Ga0066655_10089935All Organisms → cellular organisms → Archaea1694Open in IMG/M
3300018433|Ga0066667_10238919All Organisms → cellular organisms → Archaea1367Open in IMG/M
3300018433|Ga0066667_11261904All Organisms → cellular organisms → Archaea645Open in IMG/M
3300018433|Ga0066667_11557426All Organisms → cellular organisms → Archaea587Open in IMG/M
3300018468|Ga0066662_10130092All Organisms → cellular organisms → Archaea1859Open in IMG/M
3300018468|Ga0066662_11755404All Organisms → cellular organisms → Archaea649Open in IMG/M
3300026296|Ga0209235_1031070All Organisms → cellular organisms → Archaea2753Open in IMG/M
3300026296|Ga0209235_1067287All Organisms → cellular organisms → Archaea1647Open in IMG/M
3300026296|Ga0209235_1222449All Organisms → cellular organisms → Archaea609Open in IMG/M
3300026297|Ga0209237_1002046All Organisms → cellular organisms → Archaea12028Open in IMG/M
3300026297|Ga0209237_1013049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4911Open in IMG/M
3300026297|Ga0209237_1016127All Organisms → cellular organisms → Archaea4358Open in IMG/M
3300026297|Ga0209237_1093210All Organisms → cellular organisms → Archaea1343Open in IMG/M
3300026297|Ga0209237_1096211All Organisms → cellular organisms → Archaea1312Open in IMG/M
3300026297|Ga0209237_1216494All Organisms → cellular organisms → Archaea600Open in IMG/M
3300026298|Ga0209236_1017712All Organisms → cellular organisms → Archaea4048Open in IMG/M
3300026298|Ga0209236_1027277All Organisms → cellular organisms → Archaea3101Open in IMG/M
3300026301|Ga0209238_1001292All Organisms → cellular organisms → Bacteria9664Open in IMG/M
3300026306|Ga0209468_1109255All Organisms → cellular organisms → Archaea863Open in IMG/M
3300026313|Ga0209761_1016822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4647Open in IMG/M
3300026313|Ga0209761_1073251All Organisms → cellular organisms → Archaea1807Open in IMG/M
3300026314|Ga0209268_1013746All Organisms → cellular organisms → Archaea3153Open in IMG/M
3300026317|Ga0209154_1012530All Organisms → cellular organisms → Archaea4106Open in IMG/M
3300026317|Ga0209154_1012955All Organisms → cellular organisms → Bacteria4021Open in IMG/M
3300026323|Ga0209472_1005717All Organisms → cellular organisms → Bacteria6614Open in IMG/M
3300026326|Ga0209801_1063808All Organisms → cellular organisms → Archaea1647Open in IMG/M
3300026326|Ga0209801_1137562All Organisms → cellular organisms → Archaea1038Open in IMG/M
3300026328|Ga0209802_1154587All Organisms → cellular organisms → Archaea962Open in IMG/M
3300026332|Ga0209803_1004781All Organisms → cellular organisms → Bacteria7843Open in IMG/M
3300026333|Ga0209158_1252020All Organisms → cellular organisms → Archaea605Open in IMG/M
3300026334|Ga0209377_1028289All Organisms → cellular organisms → Archaea2721Open in IMG/M
3300026342|Ga0209057_1009378All Organisms → cellular organisms → Bacteria6237Open in IMG/M
3300026524|Ga0209690_1116416All Organisms → cellular organisms → Archaea1062Open in IMG/M
3300026528|Ga0209378_1000045All Organisms → cellular organisms → Archaea78882Open in IMG/M
3300026532|Ga0209160_1139870All Organisms → cellular organisms → Archaea1142Open in IMG/M
3300026536|Ga0209058_1001250All Organisms → cellular organisms → Archaea21708Open in IMG/M
3300026536|Ga0209058_1032595All Organisms → cellular organisms → Archaea3191Open in IMG/M
3300026536|Ga0209058_1033162All Organisms → cellular organisms → Archaea3154Open in IMG/M
3300026538|Ga0209056_10001840All Organisms → cellular organisms → Archaea23196Open in IMG/M
3300026538|Ga0209056_10022695All Organisms → cellular organisms → Bacteria6086Open in IMG/M
3300026538|Ga0209056_10557660All Organisms → cellular organisms → Archaea582Open in IMG/M
3300026547|Ga0209156_10172074All Organisms → cellular organisms → Archaea1043Open in IMG/M
3300026552|Ga0209577_10217361All Organisms → cellular organisms → Archaea1458Open in IMG/M
3300027882|Ga0209590_10025562All Organisms → cellular organisms → Archaea3045Open in IMG/M
3300028536|Ga0137415_10036543All Organisms → cellular organisms → Bacteria4821Open in IMG/M
3300028536|Ga0137415_11022485All Organisms → cellular organisms → Archaea638Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil49.14%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil28.45%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil15.52%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cmEnvironmentalOpen in IMG/M
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026306Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25385J37094_1002578213300002558Grasslands SoilMALLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP*
JGI25385J37094_1003058333300002558Grasslands SoilMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP*
JGI25385J37094_1015993313300002558Grasslands SoilMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAARP*
JGI25383J37093_1002120243300002560Grasslands SoilMEQLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
JGI25384J37096_1016349613300002561Grasslands SoilMTLSGREGAMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAARP*
JGI25382J37095_1002634833300002562Grasslands SoilMALLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARA*
JGI25382J37095_1007716513300002562Grasslands SoilMTLSREEGAMALLKRIREFIGEVSRDPQYGTDGSLILTEMGRLEITIKKLAEEAARP*
JGI25386J43895_1005057233300002912Grasslands SoilLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP*
JGI25386J43895_1012669113300002912Grasslands SoilNAPATFSCPSCSKVMTLSGREGAMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP*
Ga0066672_1033460713300005167SoilVMLLSREEGAMMLLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKIAEEAARP*
Ga0066679_1022204823300005176SoilMLLSREEGAMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEVTIKKLAEEAARP*
Ga0066679_1042716323300005176SoilMTLSREEGAMALLKRIREFIGEVSRDPQYVTDGSLILTEMGRLEITIKKLAEEAARP*
Ga0066690_1069510423300005177SoilMTLSGREGAMELLKRIRGFIGEVSRDPHYETNGALMLTEVE
Ga0066688_1013771623300005178SoilMILSREEGAMELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP*
Ga0066685_1001964043300005180SoilMTLSGREGAMELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066685_1016867223300005180SoilMELLKRIREFIGEVSRDPQYGTDGSSMLTEVERLEFTIRKLAEEAARP*
Ga0066685_1041557833300005180SoilREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066678_1002352513300005181SoilFSCPSCSKVMTLSGREGAMELLKRIREFIGEVSRDPQYGTDGSSMLTEVERLEFTIRKLAEEAARP*
Ga0066676_1000312873300005186SoilMTLSEREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLE
Ga0066676_1070058923300005186SoilMTLSGREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLE
Ga0066675_1041927923300005187SoilMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLADEAARP*
Ga0066689_1088433213300005447SoilMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAAR
Ga0066681_1000046553300005451SoilMTLSGREGATELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066697_1006821223300005540SoilMDLLKRIRGLIGEVSRDPHYETSGALMLTEVERLEFTIRKLAEEAARP*
Ga0066701_1005030913300005552SoilMTLSGREGAMELLKRIQGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066661_1006952113300005554SoilMTLSREEGAMALLKRIREFIGEVSKDPQYRTDGSLILTEVGRLEVTIKKLAEEAARP*
Ga0066661_1016453513300005554SoilMLLSREEGAMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEATIKKLAEEAARP*
Ga0066707_1016000233300005556SoilMELLKRIREFIGEVSRNPQYGTDGSSMLTEVERLEFTIRKLAEEAARP*
Ga0066704_1028417733300005557SoilGEVMLQSREEGAMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEVTIKKLAEEAARP
Ga0066704_1043716323300005557SoilMELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP*
Ga0066698_1018515813300005558SoilLSGREGAMEQLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066698_1030656223300005558SoilMELLKRIREFIGEVSRDPQYGTDGSLMLTEVERLEFTIRRLAEEAARP*
Ga0066700_1033826623300005559SoilMLQSREEGAMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEVTIKKLAEEAARP*
Ga0066703_1015176013300005568SoilMELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEE
Ga0066703_1018418723300005568SoilMTLSGREGAMELLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAARP*
Ga0066694_1001590723300005574SoilMELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066656_1072624623300006034SoilFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066656_1077974113300006034SoilMTLSGREGAMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAAR
Ga0066656_1105112213300006034SoilCPSCGKVMTLSGREGAMELLKHIREFIGEVSRDPQYGTDGSSMLTEVERLEFTIRKLAEEAARP*
Ga0066653_1012988813300006791SoilMTLSGREGAMDLLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP*
Ga0066665_1020212933300006796SoilLSGREGAMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLADEAARP*
Ga0066659_1112413313300006797SoilMILSREEGAIELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP*
Ga0066660_1023207513300006800SoilLSGREGAMELLKRIRGFIGEVSRDPHYETNGALMLTEVELLEFTIRKLAEEAARP*
Ga0099793_1013696223300007258Vadose Zone SoilMILSREEGAMALLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP*
Ga0099794_1023167413300007265Vadose Zone SoilMTMTREEGAMELLNHIREFIGEISRDPQYGTHGSTMLTEVQRLEFTIKKLAEEAARP*
Ga0099829_1032367223300009038Vadose Zone SoilMTMTREEGAMELLNHVREFIGEVSKDPQYGTHGSTMLTEVQRLEFTIRKLAEEAARP*
Ga0099829_1033484313300009038Vadose Zone SoilSAANVVATFSCPACGESMTLTRGEGAMELLNHIREFIGEVSRDPQYGTHGSSVLTEVERLEFTIRKLAEEAARP*
Ga0099828_1000314383300009089Vadose Zone SoilMTLTRGEGAMELLNHIREFIGEVSRDPQYGTHGSSVLTEVERLEFTIRKLAEEAVRP*
Ga0099827_1139685623300009090Vadose Zone SoilILSREEGAMELLKRIREFIGELSRDAQYGTDGSLILTEVGRLEITIKKLSEEAARP*
Ga0066709_10026186133300009137Grasslands SoilMTLSGREGAMELLKRIRGFIGEVSRDPHYETNGALMLTEVERLGFTIRKLAEEAARP*
Ga0066709_10034490323300009137Grasslands SoilMTLSGREGAMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP*
Ga0066709_10083028113300009137Grasslands SoilMTLSGREGAMEQLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0134082_1026433023300010303Grasslands SoilCPSCDKVMTLSGREGAMDLLKRIRGLIGEVSRDPHYETSGALMLTEVERLEFTIRKLAEEAARP*
Ga0134086_1005877513300010323Grasslands SoilMTLSGREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0134080_1009196013300010333Grasslands SoilTLSGREGAMELLKRIRGFIGEVSRDLQYETDGALMLTEVERLEFTIRRLAEEAARP*
Ga0134080_1057846213300010333Grasslands SoilMTLSEREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0134063_1030136023300010335Grasslands SoilAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0134071_1040987023300010336Grasslands SoilADTNPLATFYCPSCDKVMTLSGREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP*
Ga0137388_1007709933300012189Vadose Zone SoilMTLTRGEGAMELLNHIREFIGEVSRDPQYGTHGSSVLTEVERLEFTIRKLAEEAARP*
Ga0137380_1027139733300012206Vadose Zone SoilLAAFSCPSCGKVMTLSGREGAMELLKRIREFIGEVSRDPQYGTDGSLMLTEVERLEFTIRRLAEEAARP*
Ga0137384_1092536613300012357Vadose Zone SoilEVSKNPQYGTDGSLILTEVDRLEITIKKLAEEAARP*
Ga0137360_1024626213300012361Vadose Zone SoilTFSCPSCSKVMTLSGREGAMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP*
Ga0137396_1001086423300012918Vadose Zone SoilMILSREEGAMELLKRIREFIGEVSRDPQYGTDGSTMLSQVERLEFTIRKLAEEAARP*
Ga0137396_1014782823300012918Vadose Zone SoilMTLSREEGAMKLLKRIREFIGEVSRDPQYVAEGSTMLTEVERLEFTIRKLAEEAARP*
Ga0137396_1072067713300012918Vadose Zone SoilMSLLRGEGALELLKHIREFIGEVSKDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP*
Ga0137419_1139045313300012925Vadose Zone SoilRGEGALELLKHIREFIGEVSKDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP*
Ga0137416_1168145213300012927Vadose Zone SoilILSREEGTSERLKRMREFIGEVSKDPRYETDGSLILTEISRLEITIKKLAEEAARP*
Ga0134110_1003728313300012975Grasslands SoilMTLSGREGAMELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLA
Ga0134112_1015400613300017656Grasslands SoilMTLSGREGAMDLLKRIRGLIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0066655_1000896243300018431Grasslands SoilMTLSEREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0066655_1008993523300018431Grasslands SoilMTLSGREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0066667_1023891933300018433Grasslands SoilMTLSGREGAMELLKRIREFIGEVSRDPQYGTDGSSMLTEVERLEFTIRKLAEEAARP
Ga0066667_1126190413300018433Grasslands SoilMTLSGREGAMDLLKRIRGLIGEVSRDPHYETSGALMLTEVERLEFTIRKLAEEAARP
Ga0066667_1155742613300018433Grasslands SoilMTLSGREGAMELLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAARP
Ga0066662_1013009243300018468Grasslands SoilMILSREEGAMELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP
Ga0066662_1175540413300018468Grasslands SoilGETMILSREEGAMELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP
Ga0209235_103107013300026296Grasslands SoilMILSREEGAMALLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP
Ga0209235_106728713300026296Grasslands SoilMHPPHFPALLAVMSLSGREGAMELLKHIREFIGEVSRDPQYGTNGSSMLTDVERLEFTIRKLAEEAARP
Ga0209235_122244913300026296Grasslands SoilMELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP
Ga0209237_1002046103300026297Grasslands SoilMTLSGREGAMEQLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0209237_101304963300026297Grasslands SoilREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP
Ga0209237_101612723300026297Grasslands SoilMALLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP
Ga0209237_109321023300026297Grasslands SoilMALLKRIREFIGEVSRDPQYGTDGSLILTEMGRLEITIKKLAEE
Ga0209237_109621123300026297Grasslands SoilMVRSREEGAMALVKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEATRP
Ga0209237_121649413300026297Grasslands SoilMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP
Ga0209236_101771233300026298Grasslands SoilLSGREGAMEQLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0209236_102727743300026298Grasslands SoilMTLSGREGAMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAARP
Ga0209238_100129263300026301Grasslands SoilMTLSGREGAMELLKRIREFIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP
Ga0209468_110925513300026306SoilRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP
Ga0209761_101682213300026313Grasslands SoilEFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARP
Ga0209761_107325133300026313Grasslands SoilMALLKRIREFIGEVSKDPQYGTDGSLILTEVGRLEVTIKKLAEEAARPYGGLIDF
Ga0209268_101374623300026314SoilMELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP
Ga0209154_101253013300026317SoilMLLSREEGAMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEATIKKLAEEAARP
Ga0209154_101295523300026317SoilMMLLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKIAEEAARP
Ga0209472_100571753300026323SoilMTLSGREGAMELLKRIRGFIGEVSRDPQYCTDGALMLTEVERLEFTIRKLAEEAARP
Ga0209801_106380833300026326SoilPAIFSCPSCSKVMTLSGREGAMELLKRIREFIGEVSRDPQYGTDGSSMLTEVERLEFTIRKLAEEAARP
Ga0209801_113756213300026326SoilMILSREEGAIELLKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEAASP
Ga0209802_115458723300026328SoilMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEVTIKKLAEEAARP
Ga0209803_100478143300026332SoilMELLKRIREFIGEVSRDPQYGTDGSSMLTEVERLEFTIRKLAEEAARP
Ga0209158_125202013300026333SoilIGEVSRDPQYGTNGSSMLTEVERLEFTIRKLAEEAARP
Ga0209377_102828943300026334SoilMTLSREEGAMALLKRIREFIGEVSRDPQYVTDGSLILTEMGRLEITIKKLAEEAARP
Ga0209057_100937833300026342SoilMDLLKRIRGLIGEVSRDPHYETSGALMLTEVERLEFTIRKLAEEAARP
Ga0209690_111641613300026524SoilLSGREGAMELLKRIQGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0209378_1000045513300026528SoilMELLKRIREFIGEVSRNPQYGTDGSSMLTEVERLEFTIRKLAEEAARP
Ga0209160_113987013300026532SoilCGEVMLQSREEGAMALLKCIREFIGEVSKDSKYGTEGSLILTEVGRLEVTIKKLAEEAAR
Ga0209058_1001250173300026536SoilLSEREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0209058_103259543300026536SoilLSGREGAMELLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0209058_103316233300026536SoilMEQLKRIRGFIGEVSRDPQYETDGALMLTEVERLEFTIRKLAEEAARP
Ga0209056_10001840153300026538SoilMTLSGREGAMELLKRIREFIGEVSRNPQYGTDGSSMLTEVERLEFTIRKLAEEAARP
Ga0209056_1002269563300026538SoilMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLAEEAARP
Ga0209056_1055766013300026538SoilVKRIREFIGEVSKDPQYGTDGSLILTEVDRLEITIKKLAEEATRP
Ga0209156_1017207413300026547SoilCDKVMTLSGREGAMDLLKRIRGFIGEVSRDPHYETNGALMLTEVERLEFTIRKLADEAAR
Ga0209577_1021736113300026552SoilMTLSGREGAMELLKRIRGFIGEVSRDPHYETNGALMLTEVELLEFTIRKLAEEAARP
Ga0209590_1002556233300027882Vadose Zone SoilMELLKRIREFIGELSRDAQYGTDGSLILTEVGRLEITIKKLSEEAARP
Ga0137415_1003654353300028536Vadose Zone SoilMREFIGEVSKDPRYETDGSLILTEISRLEITIKKLAEEAARP
Ga0137415_1102248513300028536Vadose Zone SoilMELLKRIREFIGEVSRDPQYGTDGSSILTEIELLEFTIRKLAEEAARP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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