Metagenome / Metatranscriptome Family F078682

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078682
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	52 residues
Representative Sequence	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDA
Number of Associated Samples	84
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.13 %
% of genes near scaffold ends (potentially truncated)	96.55 %
% of genes from short scaffolds (< 2000 bps)	93.97 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.241 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.000 % of family members)
Environment Ontology (ENVO)	Unclassified (57.759 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.138 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.22% β-sheet: 1.96% Coil/Unstructured: 58.82%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13411	MerR_1	36.21
PF00216	Bac_DNA_binding	8.62
PF08541	ACP_syn_III_C	1.72
PF08545	ACP_syn_III	1.72
PF02504	FA_synthesis	0.86
PF03981	Ubiq_cyt_C_chap	0.86
PF13592	HTH_33	0.86
PF04355	SmpA_OmlA	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	8.62
COG0416	Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis)	Lipid transport and metabolism [I]	0.86
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.86
COG5452	Uncharacterized conserved protein	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.24 %
Unclassified	root	N/A	7.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.24 %
Unclassified	root	N/A	7.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.24 %
Unclassified	root	N/A	7.76 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	87.07 %
Unclassified	root	N/A	7.76 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.41 %
Unclassified	root	N/A	7.76 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.52 %
Unclassified	root	N/A	7.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.76 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	1.72 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.76 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.72 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.76 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1.72 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.72 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_108441022	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300005332\|Ga0066388_104844493	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300005332\|Ga0066388_108061835	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300005447\|Ga0066689_10828653	Not Available	574	Open in IMG/M
3300005467\|Ga0070706_101472302	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300005467\|Ga0070706_101476562	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300005471\|Ga0070698_101327730	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300005546\|Ga0070696_101837418	Not Available	524	Open in IMG/M
3300005561\|Ga0066699_10764310	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300005713\|Ga0066905_100823987	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300005713\|Ga0066905_101087581	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300005764\|Ga0066903_104183652	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300005764\|Ga0066903_104367011	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300005764\|Ga0066903_104451404	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300005764\|Ga0066903_104767456	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005764\|Ga0066903_106360657	All Organisms → cellular organisms → Bacteria → Proteobacteria	616	Open in IMG/M
3300005764\|Ga0066903_108204422	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300006578\|Ga0074059_11813002	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300006853\|Ga0075420_101898153	Not Available	509	Open in IMG/M
3300006854\|Ga0075425_101837898	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300009137\|Ga0066709_102760568	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300010043\|Ga0126380_10214136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1302	Open in IMG/M
3300010043\|Ga0126380_10493644	All Organisms → cellular organisms → Bacteria → Proteobacteria	937	Open in IMG/M
3300010043\|Ga0126380_10738242	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300010043\|Ga0126380_11403841	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300010047\|Ga0126382_12248459	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300010358\|Ga0126370_11511755	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300010359\|Ga0126376_11176058	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300010361\|Ga0126378_12516239	Not Available	588	Open in IMG/M
3300010366\|Ga0126379_13146626	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300010398\|Ga0126383_10122177	Not Available	2375	Open in IMG/M
3300010398\|Ga0126383_10607501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1165	Open in IMG/M
3300010398\|Ga0126383_10609194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300010398\|Ga0126383_10995462	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300012189\|Ga0137388_10204634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1780	Open in IMG/M
3300012206\|Ga0137380_11519438	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300012357\|Ga0137384_10625201	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300012923\|Ga0137359_11784798	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300012929\|Ga0137404_12309117	Not Available	503	Open in IMG/M
3300012951\|Ga0164300_10348512	All Organisms → cellular organisms → Bacteria → Proteobacteria	794	Open in IMG/M
3300012961\|Ga0164302_11254679	Not Available	596	Open in IMG/M
3300012971\|Ga0126369_12567850	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300016270\|Ga0182036_10600036	All Organisms → cellular organisms → Bacteria → Proteobacteria	883	Open in IMG/M
3300016294\|Ga0182041_11309854	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300016319\|Ga0182033_10896701	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300016371\|Ga0182034_10818526	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300016422\|Ga0182039_10967172	All Organisms → cellular organisms → Bacteria → Proteobacteria	762	Open in IMG/M
3300018482\|Ga0066669_10768276	All Organisms → cellular organisms → Bacteria → Proteobacteria	851	Open in IMG/M
3300021560\|Ga0126371_11554000	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300021560\|Ga0126371_12808652	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300025928\|Ga0207700_10448187	All Organisms → cellular organisms → Bacteria → Proteobacteria	1137	Open in IMG/M
3300026482\|Ga0257172_1112168	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300028047\|Ga0209526_10637376	Not Available	678	Open in IMG/M
3300031543\|Ga0318516_10408854	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300031544\|Ga0318534_10578867	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300031545\|Ga0318541_10060862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1960	Open in IMG/M
3300031545\|Ga0318541_10403007	All Organisms → cellular organisms → Bacteria → Proteobacteria	764	Open in IMG/M
3300031561\|Ga0318528_10006594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	5090	Open in IMG/M
3300031561\|Ga0318528_10258315	All Organisms → cellular organisms → Bacteria → Proteobacteria	934	Open in IMG/M
3300031564\|Ga0318573_10413976	All Organisms → cellular organisms → Bacteria → Proteobacteria	724	Open in IMG/M
3300031564\|Ga0318573_10766419	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300031572\|Ga0318515_10062471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1898	Open in IMG/M
3300031572\|Ga0318515_10322620	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300031573\|Ga0310915_10476081	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
3300031640\|Ga0318555_10368651	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300031640\|Ga0318555_10689040	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031679\|Ga0318561_10093036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1575	Open in IMG/M
3300031679\|Ga0318561_10126707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1360	Open in IMG/M
3300031713\|Ga0318496_10163076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1219	Open in IMG/M
3300031723\|Ga0318493_10884145	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300031724\|Ga0318500_10174995	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300031748\|Ga0318492_10110000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1361	Open in IMG/M
3300031748\|Ga0318492_10154067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1160	Open in IMG/M
3300031748\|Ga0318492_10172364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1098	Open in IMG/M
3300031763\|Ga0318537_10091823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1122	Open in IMG/M
3300031768\|Ga0318509_10052142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2088	Open in IMG/M
3300031769\|Ga0318526_10018106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2422	Open in IMG/M
3300031771\|Ga0318546_10513996	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300031771\|Ga0318546_10554654	All Organisms → cellular organisms → Bacteria → Proteobacteria	807	Open in IMG/M
3300031777\|Ga0318543_10063897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1529	Open in IMG/M
3300031777\|Ga0318543_10258235	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300031778\|Ga0318498_10205599	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300031779\|Ga0318566_10385605	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300031780\|Ga0318508_1114142	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300031781\|Ga0318547_10459565	All Organisms → cellular organisms → Bacteria → Proteobacteria	784	Open in IMG/M
3300031782\|Ga0318552_10213835	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300031792\|Ga0318529_10110891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1244	Open in IMG/M
3300031792\|Ga0318529_10114218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1226	Open in IMG/M
3300031792\|Ga0318529_10215061	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300031795\|Ga0318557_10151737	All Organisms → cellular organisms → Bacteria → Proteobacteria	1047	Open in IMG/M
3300031796\|Ga0318576_10216152	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300031798\|Ga0318523_10320685	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300031799\|Ga0318565_10223315	All Organisms → cellular organisms → Bacteria → Proteobacteria	916	Open in IMG/M
3300031821\|Ga0318567_10247646	All Organisms → cellular organisms → Bacteria → Proteobacteria	1000	Open in IMG/M
3300031821\|Ga0318567_10410609	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300031845\|Ga0318511_10368875	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300031880\|Ga0318544_10213449	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300031890\|Ga0306925_10644269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1114	Open in IMG/M
3300031890\|Ga0306925_10763522	All Organisms → cellular organisms → Bacteria → Proteobacteria	1006	Open in IMG/M
3300031890\|Ga0306925_10901316	All Organisms → cellular organisms → Bacteria → Proteobacteria	909	Open in IMG/M
3300031893\|Ga0318536_10193817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1034	Open in IMG/M
3300031893\|Ga0318536_10264204	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300031894\|Ga0318522_10009320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2910	Open in IMG/M
3300031897\|Ga0318520_10433362	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300031912\|Ga0306921_11443837	All Organisms → cellular organisms → Bacteria → Proteobacteria	754	Open in IMG/M
3300032035\|Ga0310911_10214815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1096	Open in IMG/M
3300032039\|Ga0318559_10161554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1020	Open in IMG/M
3300032051\|Ga0318532_10114148	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300032052\|Ga0318506_10003349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4600	Open in IMG/M
3300032059\|Ga0318533_11059642	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300032090\|Ga0318518_10366833	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
3300032094\|Ga0318540_10148435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1122	Open in IMG/M
3300032261\|Ga0306920_102579097	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300033289\|Ga0310914_10990904	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300033290\|Ga0318519_10514205	All Organisms → cellular organisms → Bacteria → Proteobacteria	722	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	1.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.28%
Plants	Host-Associated → Plants	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.28%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.62%
Loam	Environmental → Terrestrial → Soil → Loam	14.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1084410222	3300000956	Soil	MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCH
Ga0066388_1048444931	3300005332	Tropical Forest Soil	MTIRRGVGAALAFASLLLAAAAHGQDGTQQSAQHPGRSVV
Ga0066388_1080319552	3300005332	Tropical Forest Soil	MRLRRTVGALLACAPLVLAAPVAAQDGAQPPAAQHPGRNVVMSKCFQCHTDAMFRDW
Ga0066388_1080618351	3300005332	Tropical Forest Soil	MTVWRNVGAALACAPLLLTAAAYGQDGAQQGTQHPGRSVVM
Ga0066689_108286531	3300005447	Soil	MIIWRNVGAALACAPLLLAAAAHGQDGAQQSAQHPGRSVVMSKCFQCHT
Ga0070706_1014723021	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHT
Ga0070706_1014765621	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHT
Ga0070698_1013277301	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MIIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW
Ga0070696_1018374182	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MIIWRNVGAALACAPLLLAAVAHGQDGAQQSAQHPGRSVVMSKCFQCHT
Ga0066699_107643101	3300005561	Soil	MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTD
Ga0066905_1008239872	3300005713	Tropical Forest Soil	MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSV
Ga0066905_1010875811	3300005713	Tropical Forest Soil	MINWRNVGAALACAPLLLAAAAHGQDGAQQSAQHP
Ga0066903_1041836522	3300005764	Tropical Forest Soil	MIIWRNVAAALACAPLLLAAAAHGQDDAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAA
Ga0066903_1043670111	3300005764	Tropical Forest Soil	MTIRQGVSAALACAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQR
Ga0066903_1044514042	3300005764	Tropical Forest Soil	MAVRRTLAALLACAPLALASAADAQDAGQQPAAQHPGRAVVMSKCFQCHTDAMFRDH
Ga0066903_1047674561	3300005764	Tropical Forest Soil	MIIWRNVGAALACAPLLLAAAAYGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRG
Ga0066903_1063606571	3300005764	Tropical Forest Soil	MTIRQGVNAALACAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQC
Ga0066903_1082044221	3300005764	Tropical Forest Soil	MTIRRTVGALLVGAPLVLAAPVAAQDGAQPPAAQHPGRNVVMSKCFQCHTDAMFRDWRQD
Ga0074059_118130021	3300006578	Soil	MTIRQGVSAALAFASLLLAAAAHGQDATQQSAQHPGRSVVM
Ga0075420_1018981531	3300006853	Populus Rhizosphere	MAVGRSLATLLVCAPLLLPAAPAGAQDAAQPPAAQHPGRAVVMSKCFQC
Ga0075425_1018378982	3300006854	Populus Rhizosphere	MTIRQGVSAALAFASLLLGAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAM
Ga0066709_1027605681	3300009137	Grasslands Soil	MDYHLKRTGDQSMMAWRSVAVALACSLLLAVPATAQDAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRGRWE
Ga0126380_102141361	3300010043	Tropical Forest Soil	MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQ
Ga0126380_104936442	3300010043	Tropical Forest Soil	MMVWRNVGAALACAPLLLTAAAHGQDGAQQNAQHPGRSVVMSNCFQCHTDAMFRDQRQDRRGW
Ga0126380_107382421	3300010043	Tropical Forest Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQ
Ga0126380_114038412	3300010043	Tropical Forest Soil	MTLGRIVAVVFACVVVAAPAFAQDSTQQSAQHSGRSVVMSKCFQCHTDAMFREQRQDRRGWEAAI*
Ga0126382_122484592	3300010047	Tropical Forest Soil	MINWRNVGAALACAPLLLAAAAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMF
Ga0126370_115117552	3300010358	Tropical Forest Soil	MTIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGR
Ga0126376_111760582	3300010359	Tropical Forest Soil	MINWRNVGAALACAPLLLAAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFR
Ga0126378_125162392	3300010361	Tropical Forest Soil	MTIRQCVSAALSCAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCF
Ga0126379_131466262	3300010366	Tropical Forest Soil	MIVWRNVGAALACAPLLLTAAAYGQDGAQQGTQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI
Ga0126383_101221771	3300010398	Tropical Forest Soil	MTIGRTAAAVFACVVLATPAFAQDGTQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRG
Ga0126383_106075013	3300010398	Tropical Forest Soil	MIVWRNVGAALACAPLLLTAAAYGQDGAQQGTQHPG
Ga0126383_106091941	3300010398	Tropical Forest Soil	MTIRQGVSAALTCAPLLLAAAAHGQDATQQTAQHPGRSVVMSKCFQCHTDAMFRDQRQ
Ga0126383_109954621	3300010398	Tropical Forest Soil	MIIWRNVGAALACAPLLLAAAAYGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW
Ga0137388_102046341	3300012189	Vadose Zone Soil	MTLWRTVGVVLACAPLMLAAPANAQGTAQPAQQPGRSVVMSKCFQCHTDAM
Ga0137380_115194382	3300012206	Vadose Zone Soil	MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCF
Ga0137384_106252011	3300012357	Vadose Zone Soil	MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGR
Ga0137359_117847981	3300012923	Vadose Zone Soil	MTIRQGVSAALAFAPLLLAAAAQGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWE
Ga0137404_123091171	3300012929	Vadose Zone Soil	MIIWRNVGAALACAPLLLAAAAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW*
Ga0164300_103485121	3300012951	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDGNKQAAQHPGR
Ga0164302_112546792	3300012961	Soil	MTIRQGVSVALAFAPLLLAAAAHGQDGTQQTAQHPGRSVVMS
Ga0126369_125678502	3300012971	Tropical Forest Soil	MTIRQGVSAALACASLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCH
Ga0182036_106000362	3300016270	Soil	MTIRQGVSAALACAPLLLAAAAHGQDATQQSTRHPGRSVVMSKCFQCHTDAMFRDQRQDR
Ga0182041_113098541	3300016294	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAA
Ga0182033_108967012	3300016319	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDA
Ga0182034_108185262	3300016371	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDAMFRDQRQD
Ga0182039_109671722	3300016422	Soil	MIIWRNVAAALACAPLLLTATAHGQDGAQQSAQHPGRSVVMSKCFQCHTD
Ga0066669_107682761	3300018482	Grasslands Soil	MTIRQGVRATLAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMF
Ga0126371_115540002	3300021560	Tropical Forest Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHT
Ga0126371_128086521	3300021560	Tropical Forest Soil	MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFRDQRQD
Ga0207700_104481871	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MIIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI
Ga0257172_11121681	3300026482	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQC
Ga0209526_106373761	3300028047	Forest Soil	MTIRQGVSAALAFASLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMF
Ga0318516_104088541	3300031543	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQ
Ga0318534_105788671	3300031544	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMF
Ga0318541_100608624	3300031545	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDAMFRD
Ga0318541_104030072	3300031545	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTD
Ga0318528_100065948	3300031561	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEA
Ga0318528_102583151	3300031561	Soil	MTIRQGVSAALACAPLLLAAAAHGQDGTQQTEQHPGRSMVMSKCFQ
Ga0318573_104139762	3300031564	Soil	MTIRQGVSAALACAPLLLAAAAHGQDGTQQTEQHPGRSMVMSKCFLCHT
Ga0318573_107664191	3300031564	Soil	MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKC
Ga0318515_100624714	3300031572	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCH
Ga0318515_103226202	3300031572	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCF
Ga0310915_104760811	3300031573	Soil	MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQ
Ga0318555_103686511	3300031640	Soil	MTIRQGVSAALACAPLLLAAAAHGQDATQQTAQHPGRSVVMSKCFQCHTD
Ga0318555_106890401	3300031640	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDRRGW
Ga0318561_100930364	3300031679	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQ
Ga0318561_101267073	3300031679	Soil	MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI
Ga0318496_101630761	3300031713	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVM
Ga0318493_108841452	3300031723	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQC
Ga0318500_101749952	3300031724	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRK
Ga0318492_101100001	3300031748	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQD
Ga0318492_101540673	3300031748	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHADAMFR
Ga0318492_101723641	3300031748	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSK
Ga0318537_100918233	3300031763	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMS
Ga0318509_100521424	3300031768	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMS
Ga0318526_100181064	3300031769	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQR
Ga0318546_105139961	3300031771	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKC
Ga0318546_105546542	3300031771	Soil	MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQHPGRSVVMSKCFQCHTDAMFRDQRQD
Ga0318543_100638971	3300031777	Soil	MTIRQGVSAALACAPLLLAAAAHGQDATQQSTRHPGRSVVMSKCFQCHTDAMFRDQRQDRRG
Ga0318543_102582352	3300031777	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHADAM
Ga0318498_102055991	3300031778	Soil	MTIRQGVSAALACAPLLLAAAAHGQDGTQQTEQHPGRSMVMSKCFQCH
Ga0318566_103856052	3300031779	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNV
Ga0318508_11141422	3300031780	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCH
Ga0318547_104595651	3300031781	Soil	MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQD
Ga0318552_102138352	3300031782	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVV
Ga0318529_101108911	3300031792	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRKDRRGWE
Ga0318529_101142181	3300031792	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCH
Ga0318529_102150612	3300031792	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVV
Ga0318557_101517371	3300031795	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDRRGWE
Ga0318576_102161521	3300031796	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDAT
Ga0318523_103206851	3300031798	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRKDRRGW
Ga0318565_102233152	3300031799	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHT
Ga0318567_102476461	3300031821	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDR
Ga0318567_104106091	3300031821	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWEAAI
Ga0318511_103688751	3300031845	Soil	MTIRQGVSAALAFAPLLLAAAAHGQGATQQSAQHPGRSVVMSKCFQCHTDAMFRD
Ga0318544_102134492	3300031880	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQ
Ga0306925_106442693	3300031890	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDA
Ga0306925_107635222	3300031890	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRG
Ga0306925_109013161	3300031890	Soil	MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWE
Ga0318536_101938171	3300031893	Soil	MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSAVMSKC
Ga0318536_102642042	3300031893	Soil	MTIRQGVSAALACAPLLLAAAAYGQDATQQSTQHPGRNVVMSKCFQCHTDAMFRDQRQDRRG
Ga0318522_100093201	3300031894	Soil	MIVWRNVGAALACAPLLLTAAAHGQDGAQQGAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGW
Ga0318520_104333622	3300031897	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAMFRDQRQDRRGWE
Ga0306921_114438371	3300031912	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCF
Ga0310911_102148153	3300032035	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTD
Ga0318559_101615543	3300032039	Soil	MTIRQGVSAALAFAPLLLAAAAHGQDATQQSAQHPGRSVVMSK
Ga0318532_101141481	3300032051	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHADAMFRD
Ga0318506_100033491	3300032052	Soil	MIIWRNVAAALACAPLLLAATAHGQDGAQQSAQHPGRSVVMSKCFQCHTDAM
Ga0318533_110596421	3300032059	Soil	MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQPPGRSVVMSKCFQCH
Ga0318518_103668332	3300032090	Soil	MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQCHTDAMFR
Ga0318540_101484351	3300032094	Soil	MTIRQGVSAALACAPLLLAAAAHGQDAIQQTAQHPGRSVVMSKCFQCHTDAMF
Ga0306920_1025790971	3300032261	Soil	MTIRQGVSAALAFASLLLAAAAHGQDGTQQAAQPPGRSVVMSKCFQCHTDAMFRDQ
Ga0310914_109909041	3300033289	Soil	MIIWRNVAAALACAPLLLAATAHGQDVAQQSAQHPGRSVVMS
Ga0318519_105142051	3300033290	Soil	MTIRQGVSAALVFAPLLLAAAAHGQDGTQQSAQHPGRSVVMSKCFQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078682

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences