NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F078814

Metagenome / Metatranscriptome Family F078814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078814
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 47 residues
Representative Sequence KDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Number of Associated Samples 105
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.28 %
% of genes from short scaffolds (< 2000 bps) 95.69 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (82.759 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(31.034 % of family members)
Environment Ontology (ENVO) Unclassified
(84.483 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.069 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 63.04%    β-sheet: 0.00%    Coil/Unstructured: 36.96%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF03420Peptidase_S77 3.45
PF07230Portal_Gp20 1.72
PF07068Gp23 0.86
PF04851ResIII 0.86



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A82.76 %
All OrganismsrootAll Organisms17.24 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10133956Not Available944Open in IMG/M
3300000115|DelMOSum2011_c10118301Not Available834Open in IMG/M
3300000116|DelMOSpr2010_c10150809Not Available796Open in IMG/M
3300000116|DelMOSpr2010_c10247323Not Available545Open in IMG/M
3300000149|LPaug09P1610mDRAFT_c1017922Not Available892Open in IMG/M
3300000149|LPaug09P1610mDRAFT_c1024182Not Available743Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1022770Not Available656Open in IMG/M
3300000168|LPjun09P1210mDRAFT_c1004790All Organisms → Viruses → Predicted Viral1198Open in IMG/M
3300000257|LP_F_10_SI03_100DRAFT_1048241Not Available652Open in IMG/M
3300000323|LPaug09P202000mDRAFT_1037178Not Available680Open in IMG/M
3300001351|JGI20153J14318_10120688Not Available681Open in IMG/M
3300001450|JGI24006J15134_10197446Not Available617Open in IMG/M
3300001450|JGI24006J15134_10201029Not Available608Open in IMG/M
3300001472|JGI24004J15324_10119993Not Available646Open in IMG/M
3300001589|JGI24005J15628_10203837Not Available553Open in IMG/M
3300001940|GOS2222_1005054All Organisms → Viruses → Predicted Viral1865Open in IMG/M
3300004279|Ga0066605_10197160Not Available775Open in IMG/M
3300004457|Ga0066224_1085019Not Available547Open in IMG/M
3300005431|Ga0066854_10004885All Organisms → Viruses → Predicted Viral4574Open in IMG/M
3300005593|Ga0066837_10269480Not Available600Open in IMG/M
3300005608|Ga0066840_10102827Not Available595Open in IMG/M
3300006332|Ga0068500_1239722Not Available665Open in IMG/M
3300006335|Ga0068480_1124017Not Available813Open in IMG/M
3300006737|Ga0098037_1233778Not Available593Open in IMG/M
3300006752|Ga0098048_1215539Not Available565Open in IMG/M
3300006900|Ga0066376_10378877Not Available813Open in IMG/M
3300007553|Ga0102819_1091561Not Available516Open in IMG/M
3300008999|Ga0102816_1097207Not Available898Open in IMG/M
3300009026|Ga0102829_1070646All Organisms → Viruses → Predicted Viral1066Open in IMG/M
3300009058|Ga0102854_1203185Not Available568Open in IMG/M
3300009077|Ga0115552_1230994Not Available751Open in IMG/M
3300009172|Ga0114995_10435760Not Available718Open in IMG/M
3300009173|Ga0114996_10775657Not Available696Open in IMG/M
3300009173|Ga0114996_11107115Not Available558Open in IMG/M
3300009432|Ga0115005_10213927Not Available1505Open in IMG/M
3300009432|Ga0115005_10805468Not Available756Open in IMG/M
3300009440|Ga0115561_1103319Not Available1167Open in IMG/M
3300009441|Ga0115007_10433914Not Available862Open in IMG/M
3300009472|Ga0115554_1172307Not Available887Open in IMG/M
3300009476|Ga0115555_1310120Not Available634Open in IMG/M
3300009507|Ga0115572_10349896Not Available832Open in IMG/M
3300009705|Ga0115000_10685948Not Available633Open in IMG/M
3300009785|Ga0115001_10624107Not Available657Open in IMG/M
3300011013|Ga0114934_10005016All Organisms → Viruses8090Open in IMG/M
3300012953|Ga0163179_10240671All Organisms → Viruses → Predicted Viral1405Open in IMG/M
3300012954|Ga0163111_10491081All Organisms → Viruses → Predicted Viral1130Open in IMG/M
3300014959|Ga0134299_1058536Not Available547Open in IMG/M
3300017713|Ga0181391_1140102Not Available537Open in IMG/M
3300017714|Ga0181412_1096756Not Available697Open in IMG/M
3300017726|Ga0181381_1130931Not Available523Open in IMG/M
3300017744|Ga0181397_1194732Not Available508Open in IMG/M
3300017764|Ga0181385_1149867Not Available708Open in IMG/M
3300017771|Ga0181425_1252239Not Available545Open in IMG/M
3300017779|Ga0181395_1282918Not Available504Open in IMG/M
3300020185|Ga0206131_10225626Not Available896Open in IMG/M
3300020237|Ga0211478_103220Not Available680Open in IMG/M
3300020253|Ga0211685_1023480Not Available904Open in IMG/M
3300020335|Ga0211690_1101805Not Available617Open in IMG/M
3300020336|Ga0211510_1037654Not Available1216Open in IMG/M
3300020339|Ga0211605_1061683Not Available746Open in IMG/M
3300020396|Ga0211687_10150320Not Available961Open in IMG/M
3300020417|Ga0211528_10143635Not Available942Open in IMG/M
3300020423|Ga0211525_10113175All Organisms → Viruses → Predicted Viral1198Open in IMG/M
3300020425|Ga0211549_10468302Not Available519Open in IMG/M
3300020449|Ga0211642_10412956Not Available581Open in IMG/M
3300020452|Ga0211545_10100137All Organisms → Viruses → Predicted Viral1365Open in IMG/M
3300020452|Ga0211545_10213322Not Available891Open in IMG/M
3300020468|Ga0211475_10567668Not Available539Open in IMG/M
3300021342|Ga0206691_1839928Not Available695Open in IMG/M
3300022164|Ga0212022_1009888Not Available1326Open in IMG/M
(restricted) 3300022920|Ga0233426_10105856All Organisms → Viruses → Predicted Viral1237Open in IMG/M
(restricted) 3300022920|Ga0233426_10284616Not Available646Open in IMG/M
3300023296|Ga0222664_1042167Not Available794Open in IMG/M
3300024237|Ga0228653_1094677Not Available643Open in IMG/M
(restricted) 3300024255|Ga0233438_10063761All Organisms → Viruses → Predicted Viral1806Open in IMG/M
(restricted) 3300024264|Ga0233444_10237205Not Available818Open in IMG/M
(restricted) 3300024299|Ga0233448_1054498All Organisms → Viruses → Predicted Viral1188Open in IMG/M
(restricted) 3300024336|Ga0233447_1112748Not Available780Open in IMG/M
3300024346|Ga0244775_10820012Not Available743Open in IMG/M
3300024346|Ga0244775_10900526Not Available703Open in IMG/M
3300025120|Ga0209535_1132473Not Available823Open in IMG/M
3300025137|Ga0209336_10103960Not Available798Open in IMG/M
3300025138|Ga0209634_1017877All Organisms → Viruses → Predicted Viral4036Open in IMG/M
3300025138|Ga0209634_1128319All Organisms → Viruses → Predicted Viral1070Open in IMG/M
3300025508|Ga0208148_1059904Not Available913Open in IMG/M
3300025570|Ga0208660_1051901All Organisms → Viruses → Predicted Viral1020Open in IMG/M
3300025626|Ga0209716_1155104Not Available588Open in IMG/M
3300025637|Ga0209197_1120118Not Available747Open in IMG/M
3300025645|Ga0208643_1079883Not Available934Open in IMG/M
3300025652|Ga0208134_1044416All Organisms → Viruses → Predicted Viral1453Open in IMG/M
3300025886|Ga0209632_10175909Not Available1154Open in IMG/M
3300026253|Ga0208879_1096143Not Available1283Open in IMG/M
3300026270|Ga0207993_1094644Not Available810Open in IMG/M
3300027501|Ga0208948_1061832Not Available754Open in IMG/M
3300027553|Ga0208947_1136694Not Available534Open in IMG/M
3300027668|Ga0209482_1077307All Organisms → Viruses → Predicted Viral1124Open in IMG/M
3300027685|Ga0209554_1061036Not Available1340Open in IMG/M
3300027752|Ga0209192_10129777All Organisms → Viruses → Predicted Viral1013Open in IMG/M
3300027752|Ga0209192_10285850Not Available599Open in IMG/M
3300027752|Ga0209192_10367383Not Available503Open in IMG/M
3300027779|Ga0209709_10118412Not Available1353Open in IMG/M
3300027780|Ga0209502_10233180Not Available827Open in IMG/M
3300027830|Ga0209359_10542840Not Available536Open in IMG/M
3300027844|Ga0209501_10295388Not Available998Open in IMG/M
3300028196|Ga0257114_1012461All Organisms → Viruses → Predicted Viral4428Open in IMG/M
3300028671|Ga0257132_1006202All Organisms → Viruses → Predicted Viral2358Open in IMG/M
3300029448|Ga0183755_1056138Not Available959Open in IMG/M
3300029637|Ga0257131_106415Not Available632Open in IMG/M
3300029787|Ga0183757_1061279Not Available601Open in IMG/M
3300030715|Ga0308127_1046791Not Available534Open in IMG/M
3300031143|Ga0308025_1290778Not Available530Open in IMG/M
3300031597|Ga0302116_1139101Not Available762Open in IMG/M
3300031644|Ga0308001_10109918Not Available1152Open in IMG/M
3300031659|Ga0307986_10378167Not Available571Open in IMG/M
3300031775|Ga0315326_10950075Not Available527Open in IMG/M
3300032088|Ga0315321_10774923Not Available548Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine31.03%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine14.66%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine6.03%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.03%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.03%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater5.17%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.31%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.45%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine3.45%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.59%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.59%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.72%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.72%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.72%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.72%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.72%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.86%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine0.86%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.86%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.86%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.86%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.86%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.86%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000149Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10mEnvironmentalOpen in IMG/M
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300000168Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2009 P12 10mEnvironmentalOpen in IMG/M
3300000257Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100EnvironmentalOpen in IMG/M
3300000323Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P20 2000mEnvironmentalOpen in IMG/M
3300001351Pelagic Microbial community sample from North Sea - COGITO 998_met_03EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300001940Marine microbial communities from Bay of Fundy, Nova Scotia, Canada - GS006EnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005431Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75EnvironmentalOpen in IMG/M
3300005593Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86EnvironmentalOpen in IMG/M
3300005608Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302PF84AEnvironmentalOpen in IMG/M
3300006332Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200mEnvironmentalOpen in IMG/M
3300006335Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_2_0500mEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300007553Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689EnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009058Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300014959Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubationEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020237Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291767-ERR318621)EnvironmentalOpen in IMG/M
3300020253Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX555982-ERR598945)EnvironmentalOpen in IMG/M
3300020335Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)EnvironmentalOpen in IMG/M
3300020336Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)EnvironmentalOpen in IMG/M
3300020339Marine microbial communities from Tara Oceans - TARA_B100000674 (ERX555929-ERR599080)EnvironmentalOpen in IMG/M
3300020396Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555915-ERR599122)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020423Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062)EnvironmentalOpen in IMG/M
3300020425Marine microbial communities from Tara Oceans - TARA_B100001765 (ERX556083-ERR598964)EnvironmentalOpen in IMG/M
3300020449Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)EnvironmentalOpen in IMG/M
3300020452Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)EnvironmentalOpen in IMG/M
3300020468Marine microbial communities from Tara Oceans - TARA_A100000164 (ERX555914-ERR598993)EnvironmentalOpen in IMG/M
3300021342Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 12015 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022920 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MGEnvironmentalOpen in IMG/M
3300023296Saline water microbial communities from Ace Lake, Antarctica - #604EnvironmentalOpen in IMG/M
3300024237Seawater microbial communities from Monterey Bay, California, United States - 65DEnvironmentalOpen in IMG/M
3300024255 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024299 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_150_MGEnvironmentalOpen in IMG/M
3300024336 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_135_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025637Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300026253Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026270Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)EnvironmentalOpen in IMG/M
3300027501Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)EnvironmentalOpen in IMG/M
3300027553Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027668Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027685Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027752Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027780Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90 (SPAdes)EnvironmentalOpen in IMG/M
3300027830Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV (SPAdes)EnvironmentalOpen in IMG/M
3300027844Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)EnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300028671Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300029637Metatranscriptome of marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300029787Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172EnvironmentalOpen in IMG/M
3300030715Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - AG5_1295_SCM (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031143Marine microbial communities from water near the shore, Antarctic Ocean - #422EnvironmentalOpen in IMG/M
3300031597Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCMEnvironmentalOpen in IMG/M
3300031644Marine microbial communities from water near the shore, Antarctic Ocean - #5EnvironmentalOpen in IMG/M
3300031659Marine microbial communities from Ellis Fjord, Antarctic Ocean - #82EnvironmentalOpen in IMG/M
3300031775Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 32315EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1013395613300000101MarineFKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSSIEDYFDNEILS*
DelMOSum2011_1011830133300000115MarineEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN*
DelMOSpr2010_1015080913300000116MarineLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
DelMOSpr2010_1024732323300000116MarineAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
LPaug09P1610mDRAFT_101792233300000149MarineVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN*
LPaug09P1610mDRAFT_102418213300000149MarineLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN*
LPaug08P2610mDRAFT_102277033300000159MarineKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
LPjun09P1210mDRAFT_100479043300000168MarineTLLGNTKGEIITKVDSIVKQVAKKRNVKVSSIEDYFDNEILN*
LP_F_10_SI03_100DRAFT_104824133300000257MarineLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
LPaug09P202000mDRAFT_103717813300000323MarineKDIFTMLDNTKGEIISKIDGIIKQVAKKRNVKVSAIEDYFDNEILN*
JGI20153J14318_1012068833300001351Pelagic MarineVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS*
JGI24006J15134_1019744613300001450MarineKRAVKDVFIMINNIKGDDLIKKIDGIVKQVAKKRNVKVSNIEDYFDNEIIN*
JGI24006J15134_1020102913300001450MarineKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS*
JGI24004J15324_1011999313300001472MarineVKDVFTLLGNTKGEIITKVDSIIKQVAKKRSVKVSSIEDYFDNEILK*
JGI24005J15628_1020383723300001589MarineLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS*
GOS2222_100505433300001940MarineERQAVKDVFTLLDNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0066605_1019716013300004279MarineQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0066224_108501913300004457MarineKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN*
Ga0066854_1000488583300005431MarineDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0066837_1026948023300005593MarineFKKLSPAEKRAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0066840_1010282713300005608MarineVKDIYVMLDKTKGDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS*
Ga0068500_123972233300006332MarineIGKTKGDIISKIDGIIKQVARKRNVKVSRIEDYIDNEILS*
Ga0068480_112401733300006335MarineRAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0098037_123377813300006737MarineTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS*
Ga0098048_121553913300006752MarineDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS*
Ga0066376_1037887713300006900MarineKKLSPAAKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEKLN*
Ga0102819_109156123300007553EstuarineGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN*
Ga0102816_109720713300008999EstuarineGEIITKVDSIIKQVAKKRNVKISSIEDYFDNEILN*
Ga0102829_107064643300009026EstuarineVFTLLGNTKGEIITKVDSIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0102854_120318523300009058EstuarineKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILN*
Ga0115552_123099413300009077Pelagic MarineDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN*
Ga0114995_1043576033300009172MarineAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0114996_1077565713300009173MarineNIKGDDLITKIDGIVKQVAKKRNVKVSNIEDYFDNEIIN*
Ga0114996_1110711523300009173MarineEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0115005_1021392713300009432MarinePAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKISSIEDYFDNEILN*
Ga0115005_1080546813300009432MarinePAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILK*
Ga0115561_110331913300009440Pelagic MarineKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS*
Ga0115007_1043391413300009441MarineTKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN*
Ga0115554_117230713300009472Pelagic MarineVFTLLGNTKGEIITKVDSIIKQVAKKRNVKVSAIEDYFDNEILK*
Ga0115555_131012013300009476Pelagic MarineEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN*
Ga0115572_1034989633300009507Pelagic MarineTKGEIITKVDGIIKQVAKKRNVKISSIEDYFDNEILN*
Ga0115000_1068594813300009705MarineLSPAEKQAVKDVFTLLGNTKGEIITKVDSIIKQVSKKRNVKVSAIEDYFDNEILK*
Ga0115001_1062410713300009785MarineLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN*
Ga0114934_10005016123300011013Deep SubsurfaceKKLSPAEKMAVKDIYAMLGKTKGDIISKIDGIIKQVARKRNVKVSSIEDYIDNEILS*
Ga0163179_1024067113300012953SeawaterDVFTLLGNTKGEIISKVDGIIKQVAKKYKVKVSRIEDYVDNEILS*
Ga0163111_1049108113300012954Surface SeawaterDVFTMLGNTKGEIISKIEGIIKQVAKKRNVKVSAIEDYFDNEILS*
Ga0134299_105853623300014959MarineVKDVFTLLDNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS*
Ga0181391_114010223300017713SeawaterEFKKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIVKQVAKKRNVKVSAIEDYFDNEILS
Ga0181412_109675613300017714SeawaterETAEFKKLSPAQKQAVKDVFTLLGKTEVETIGNGDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0181381_113093123300017726SeawaterLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0181397_119473213300017744SeawaterTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN
Ga0181385_114986733300017764SeawaterFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0181425_125223913300017771SeawaterKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0181395_128291813300017779SeawaterEKQAVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0206131_1022562633300020185SeawaterQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILS
Ga0211478_10322023300020237MarineAEKQAVKDVFTMLGNTKGEIISKIDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0211685_102348033300020253MarineKKLSPAAKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEILN
Ga0211690_110180513300020335MarineAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0211510_103765443300020336MarineTKGDIISKIDGIIKQVARKRNVKVSSIEDYIDNEILS
Ga0211605_106168313300020339MarineYSMIGKTKGDIISKIDGIIKQVARKRNVKVSRIEDYIDNEILS
Ga0211687_1015032013300020396MarineETAEYKKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0211528_1014363513300020417MarineDIYTMIGKTKGDIISKIDSIIKQVAKKRNIKVSRIEDYIDNEILS
Ga0211525_1011317513300020423MarineSPAEKRAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0211549_1046830213300020425MarineKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0211642_1041295623300020449MarineSEKMAVKDIYTMLGKTKGDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS
Ga0211545_1010013713300020452MarineFTLLGNTKGEIISKVDGIIKQVAKKYKVKVSRIEDYVDNEILS
Ga0211545_1021332213300020452MarineFTLLGNTKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILS
Ga0211475_1056766813300020468MarineTLLGNTKGEIISKVDGIIKQVAKKRKVKVSAIEDYFDNEILS
Ga0206691_183992833300021342SeawaterAVKDIFTMLDNTKGEIITKIDSIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0212022_100988843300022164AqueousAEFKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
(restricted) Ga0233426_1010585613300022920SeawaterTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
(restricted) Ga0233426_1028461623300022920SeawaterFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0222664_104216713300023296Saline WaterGNTKGEIISKVDGIIKQVAKKRNVKISSIEDYFDNEILN
Ga0228653_109467723300024237SeawaterKDVFTMLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
(restricted) Ga0233438_1006376153300024255SeawaterFKKLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
(restricted) Ga0233444_1023720533300024264SeawaterVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
(restricted) Ga0233448_105449813300024299SeawaterFKKLSPAEKQAVKDVFTMLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
(restricted) Ga0233447_111274833300024336SeawaterGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0244775_1082001213300024346EstuarineSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKISSIEDYFDNEILN
Ga0244775_1090052613300024346EstuarineYNKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN
Ga0209535_113247313300025120MarineTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN
Ga0209336_1010396033300025137MarineVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSDIEDYFDNEILN
Ga0209634_101787783300025138MarineFKKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0209634_112831943300025138MarineKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSSIEDYFDNEILN
Ga0208148_105990413300025508AqueousKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0208660_105190143300025570AqueousFTLLDNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0209716_115510423300025626Pelagic MarineLSPAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKISSIEDYFDNEILN
Ga0209197_112011833300025637Pelagic MarineKDVFTLLDNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0208643_107988313300025645AqueousEFKKLSPAERQAVKDVFTLLDNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0208134_104441613300025652AqueousKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0209632_1017590913300025886Pelagic MarineTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0208879_109614343300026253MarineFTMLDNTKGEIISKIDSIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0207993_109464433300026270MarineVKDIYTMLGKTKGDIISKIDGIIKQVAKKRNVKVSSIEDYIDNEILS
Ga0208948_106183213300027501MarineRQAVKDVFTLLDNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0208947_113669413300027553MarineKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0209482_107730713300027668MarineGNTKGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEKLN
Ga0209554_106103643300027685MarineTKGEIISKIDSIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0209192_1012977743300027752MarineVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0209192_1028585013300027752MarineGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN
Ga0209192_1036738323300027752MarineKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN
Ga0209709_1011841253300027779MarineKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKISSIEDYFDNEILN
Ga0209502_1023318013300027780MarineKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0209359_1054284023300027830MarineKGNIISKIDGIIKQVAKKRNIKVSRIEDYIDNEILS
Ga0209501_1029538833300027844MarineKLSPAEKQAVKDVFTLLGNTKGEIITKVDSIIKQVAKKRNVKISSIEDYFDNEILN
Ga0257114_101246113300028196MarineAEKQAVKDVFTLLGNTKGEIITKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0257132_100620233300028671MarineVEYKKLSPAEKQAVKDVFTLLGNTKGEIISKVDSIVKQVAKKRNVKVSSIEDYFDNEILN
Ga0183755_105613813300029448MarineTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0257131_10641523300029637MarineVKDVFTLLGNTKGEIITKVDSIIKQVAKKRSVKVSSIEDYFDNEILK
Ga0183757_106127923300029787MarineIYTMLNKTKGNIISKIDGIIKQVAKKRNIKVSKIEDYIDNEILS
Ga0308127_104679123300030715MarineVKDIFAMLGNTKGDIISKIDGIIKQVAKKRNIKVSSIEDYFDNEILN
Ga0308025_129077823300031143MarineTKGDIISKIDGIIKQVAKKRNIKVSSIEDYFDNEILN
Ga0302116_113910113300031597MarineKLSPAEKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILN
Ga0308001_1010991813300031644MarinePAAKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSDIEDYFDNEILN
Ga0307986_1037816713300031659MarineGEIITKVDGIIKQVAKKRNVKVSDIEDYFDNEILN
Ga0315326_1095007513300031775SeawaterKQAVKDVFTLLGNTKGEIISKVDGIIKQVAKKRNVKVSAIEDYFDNEILS
Ga0315321_1077492313300032088SeawaterTAEFKKLSPAERQAVKDVFTLLGNTKGEIISKVDSIIKQVAKKRNVKVSSIEDFFDNEIL


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