Metagenome / Metatranscriptome Family F078845

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078845
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	100 residues
Representative Sequence	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAAPDGHGD
Number of Associated Samples	100
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	46.55 %
% of genes near scaffold ends (potentially truncated)	29.31 %
% of genes from short scaffolds (< 2000 bps)	82.76 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.966 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (28.448 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (38.793 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 76.42% β-sheet: 0.00% Coil/Unstructured: 23.58%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF12867	DinB_2	9.48
PF12704	MacB_PCD	6.90
PF12697	Abhydrolase_6	2.59
PF06197	DUF998	1.72
PF12695	Abhydrolase_5	0.86
PF12680	SnoaL_2	0.86
PF08818	DUF1801	0.86
PF08327	AHSA1	0.86
PF04222	DUF416	0.86
PF04140	ICMT	0.86
PF13810	DUF4185	0.86
PF07638	Sigma70_ECF	0.86
PF13649	Methyltransf_25	0.86
PF01872	RibD_C	0.86
PF12840	HTH_20	0.86
PF08241	Methyltransf_11	0.86
PF08240	ADH_N	0.86
PF13340	DUF4096	0.86
PF00254	FKBP_C	0.86
PF08734	GYD	0.86
PF13669	Glyoxalase_4	0.86
PF03807	F420_oxidored	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG3371	Uncharacterized membrane protein	Function unknown [S]	1.72
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.86
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.86
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.86
COG3068	Uncharacterized conserved protein YjaG, DUF416 family	Function unknown [S]	0.86
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.86
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.86
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.97 %
Unclassified	root	N/A	31.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	9.48 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.59 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.72 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.59 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	2.59 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.72 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	2.59 %
unclassified Terriglobales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.72 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.72 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	1.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.72 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.72 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.72 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.72 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	1.72 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.72 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.03 %
Rhizobium etli CNPAF512	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	1.72 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1.72 %
Terriglobales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	1.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.72 %
Gemmatimonas aurantiaca	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	0.86 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9112636	All Organisms → cellular organisms → Bacteria	4104	Open in IMG/M
2140918013\|NODE_14068_length_1189_cov_7.143818	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1221	Open in IMG/M
2228664021\|ICCgaii200_c1076370	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14308707	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101667534	Not Available	638	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101671676	Not Available	622	Open in IMG/M
3300000787\|JGI11643J11755_11488115	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300000789\|JGI1027J11758_12309963	Not Available	661	Open in IMG/M
3300000890\|JGI11643J12802_10174564	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300000891\|JGI10214J12806_12496748	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300000956\|JGI10216J12902_111198832	All Organisms → cellular organisms → Bacteria	3137	Open in IMG/M
3300000956\|JGI10216J12902_112811870	Not Available	999	Open in IMG/M
3300001139\|JGI10220J13317_11888511	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300003987\|Ga0055471_10066457	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1007	Open in IMG/M
3300003993\|Ga0055468_10160488	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300004114\|Ga0062593_102823756	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300004157\|Ga0062590_102098230	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300004463\|Ga0063356_103781523	Not Available	652	Open in IMG/M
3300004480\|Ga0062592_101429176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	660	Open in IMG/M
3300005093\|Ga0062594_100220494	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300005093\|Ga0062594_101362080	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	717	Open in IMG/M
3300005332\|Ga0066388_105166807	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300005366\|Ga0070659_100091317	All Organisms → cellular organisms → Bacteria	2441	Open in IMG/M
3300005367\|Ga0070667_102302601	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005439\|Ga0070711_100111555	All Organisms → cellular organisms → Bacteria	2008	Open in IMG/M
3300005455\|Ga0070663_100390945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1135	Open in IMG/M
3300005458\|Ga0070681_11690027	Not Available	559	Open in IMG/M
3300005471\|Ga0070698_100554122	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300005530\|Ga0070679_100515954	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300005535\|Ga0070684_101443923	Not Available	648	Open in IMG/M
3300005546\|Ga0070696_100896751	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300005618\|Ga0068864_102410724	Not Available	532	Open in IMG/M
3300006237\|Ga0097621_102106446	Not Available	539	Open in IMG/M
3300006755\|Ga0079222_12001737	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300006844\|Ga0075428_100815052	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300006847\|Ga0075431_100309361	Not Available	1595	Open in IMG/M
3300006853\|Ga0075420_100904467	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300006854\|Ga0075425_101819096	Not Available	683	Open in IMG/M
3300006871\|Ga0075434_101092640	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300006969\|Ga0075419_11137102	Not Available	574	Open in IMG/M
3300009094\|Ga0111539_10074833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3991	Open in IMG/M
3300009100\|Ga0075418_11944796	Not Available	640	Open in IMG/M
3300009147\|Ga0114129_11371815	Not Available	873	Open in IMG/M
3300009156\|Ga0111538_10059657	All Organisms → cellular organisms → Bacteria	4869	Open in IMG/M
3300009162\|Ga0075423_12503697	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300009168\|Ga0105104_10130387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1357	Open in IMG/M
3300009553\|Ga0105249_11656755	All Organisms → cellular organisms → Bacteria → Terrabacteria group	712	Open in IMG/M
3300009553\|Ga0105249_12844436	Not Available	555	Open in IMG/M
3300010371\|Ga0134125_11931644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300010375\|Ga0105239_10667873	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1187	Open in IMG/M
3300010403\|Ga0134123_10904510	Not Available	889	Open in IMG/M
3300011000\|Ga0138513_100012240	Not Available	1092	Open in IMG/M
3300011119\|Ga0105246_11110620	Not Available	723	Open in IMG/M
3300012915\|Ga0157302_10217347	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300012937\|Ga0162653_100004551	All Organisms → cellular organisms → Bacteria	1438	Open in IMG/M
3300012938\|Ga0162651_100044522	Not Available	686	Open in IMG/M
3300012951\|Ga0164300_10515913	Not Available	687	Open in IMG/M
3300012957\|Ga0164303_10012301	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3029	Open in IMG/M
3300012958\|Ga0164299_10065636	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300012984\|Ga0164309_10662310	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300012984\|Ga0164309_11610450	Not Available	556	Open in IMG/M
3300012986\|Ga0164304_10063132	Not Available	2071	Open in IMG/M
3300012986\|Ga0164304_10617017	Not Available	812	Open in IMG/M
3300012986\|Ga0164304_11187456	Not Available	615	Open in IMG/M
3300012986\|Ga0164304_11476689	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300012989\|Ga0164305_11142100	Not Available	672	Open in IMG/M
3300014267\|Ga0075313_1148055	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	602	Open in IMG/M
3300014326\|Ga0157380_13388214	Not Available	510	Open in IMG/M
3300014969\|Ga0157376_11605459	Not Available	685	Open in IMG/M
3300015371\|Ga0132258_10060396	All Organisms → cellular organisms → Bacteria	8728	Open in IMG/M
3300015371\|Ga0132258_10117111	All Organisms → cellular organisms → Bacteria	6322	Open in IMG/M
3300015371\|Ga0132258_11715478	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300015372\|Ga0132256_100140541	All Organisms → cellular organisms → Bacteria	2409	Open in IMG/M
3300015373\|Ga0132257_100350827	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300015373\|Ga0132257_104227183	Not Available	522	Open in IMG/M
3300018000\|Ga0184604_10078703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	979	Open in IMG/M
3300018051\|Ga0184620_10342358	Not Available	507	Open in IMG/M
3300018076\|Ga0184609_10283590	Not Available	775	Open in IMG/M
3300018465\|Ga0190269_10744074	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300018466\|Ga0190268_10169794	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300018469\|Ga0190270_10908700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium	899	Open in IMG/M
3300021078\|Ga0210381_10081361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1025	Open in IMG/M
3300022756\|Ga0222622_10617520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	783	Open in IMG/M
3300025791\|Ga0210115_1030958	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1182	Open in IMG/M
3300025917\|Ga0207660_10315144	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300025926\|Ga0207659_10455880	Not Available	1078	Open in IMG/M
3300025932\|Ga0207690_10111004	All Organisms → cellular organisms → Bacteria	1975	Open in IMG/M
3300026095\|Ga0207676_12248737	Not Available	543	Open in IMG/M
3300026116\|Ga0207674_10414060	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300027743\|Ga0209593_10032950	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300027909\|Ga0209382_10084791	All Organisms → cellular organisms → Bacteria	3729	Open in IMG/M
3300027909\|Ga0209382_12157738	Not Available	528	Open in IMG/M
3300028587\|Ga0247828_10009918	All Organisms → cellular organisms → Bacteria → Proteobacteria	3477	Open in IMG/M
3300028590\|Ga0247823_10216282	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300028592\|Ga0247822_10370553	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300028597\|Ga0247820_10197394	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300028771\|Ga0307320_10469410	Not Available	508	Open in IMG/M
3300028828\|Ga0307312_10060425	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300028889\|Ga0247827_10706691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	658	Open in IMG/M
3300031421\|Ga0308194_10211758	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	632	Open in IMG/M
3300031562\|Ga0310886_10580718	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031716\|Ga0310813_10015991	All Organisms → cellular organisms → Bacteria	5002	Open in IMG/M
3300031720\|Ga0307469_11132444	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300031854\|Ga0310904_11013976	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300031908\|Ga0310900_11264314	Not Available	616	Open in IMG/M
3300031943\|Ga0310885_10165181	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1070	Open in IMG/M
3300031944\|Ga0310884_10516096	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300031944\|Ga0310884_10995328	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300032002\|Ga0307416_101402430	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	804	Open in IMG/M
3300032075\|Ga0310890_10537414	All Organisms → cellular organisms → Bacteria → Terrabacteria group	895	Open in IMG/M
3300033412\|Ga0310810_10003111	All Organisms → cellular organisms → Bacteria	18036	Open in IMG/M
3300033412\|Ga0310810_10570772	Not Available	1098	Open in IMG/M
3300033550\|Ga0247829_10036749	All Organisms → cellular organisms → Bacteria	3329	Open in IMG/M
3300033550\|Ga0247829_10498897	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300033551\|Ga0247830_10024584	All Organisms → cellular organisms → Bacteria → Proteobacteria	3636	Open in IMG/M
3300033551\|Ga0247830_10562181	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca	901	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.97%
Host-Associated	Host-Associated	31.03%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.34%
Plants	Host-Associated → Plants	31.03%
Aquatic	Environmental → Aquatic	8.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.76%
Sediment	Environmental → Aquatic → Sediment	3.45%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Marine	Environmental → Aquatic → Marine	2.59%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.59%
Roots	Host-Associated → Plants → Roots	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.24%
Loam	Environmental → Terrestrial → Soil → Loam	6.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.45%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.59%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.59%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.24%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.45%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.21%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.59%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02841360	2088090015	Soil	MRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLDEYAALVFLTFPLNGILWGAILGAVFSSPATPDRHGE
Iowa-Corn-GraphCirc_01286450	2140918013	Soil	MRRGAGIGFLAGIALALLYIALGTRVTAYTELLGYSVGVIGFPALFAAIPVVQASGLRGGLGELAALVSITFPLNGILWGAILGAVLRSRTVPD
ICCgaii200_10763703	2228664021	Soil	LAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLDEYAALVFLTFPLNGILWGAILGAVFSSPATPDRHGE
ICChiseqgaiiFebDRAFT_143087071	3300000363	Soil	VDAHLVRRMRRGAGIGFLAGIALALLYIALGTRVTAYTELLGYSVGVIGFPALFAAIPVVQASGLRGGLGELAALVSITFPLNGILWGAILGAVLRSRTVPDGHGD*
INPhiseqgaiiFebDRAFT_1016675342	3300000364	Soil	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGIVWGGYPRGRPEVADSTGWSW*
INPhiseqgaiiFebDRAFT_1016716761	3300000364	Soil	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGIVWGGYPRGRPELAASTGCSW*
JGI11643J11755_114881152	3300000787	Soil	EALLDAPIGRRMXRGARIGXLAGXXLAVXXIALGTRVNEFTELLGYSLVIVGFPALFAVIPIVQELGLRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPDGRGD*
JGI1027J11758_123099631	3300000789	Soil	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGIXWGGYPRGRPEXAXSTGXSW*
JGI11643J12802_101745641	3300000890	Soil	LDAHIGRGMRRGARIGALAGLALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPDG*
JGI10214J12806_124967482	3300000891	Soil	IALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG*
JGI10216J12902_1111988324	3300000956	Soil	MWRGARIGLFAGIALAVLYIALGTRVNEFTELLGYSLGVVGFPALFAAIPIVQTLGLRGGLGEYAALVSITFPLNGLLWGAILGVVLTSPAAPDGQGD*
JGI10216J12902_1128118702	3300000956	Soil	LDAHIKRRMRRGVKAGLLAGIALAVLYVALGTRVHELTELLGYSLVIVGFPAIFAAIPVVQELGLRGGLGEYAALVSLAFPLNGILWGAILGVALRGPAAPDNT*
JGI10220J13317_118885111	3300001139	Soil	LDAHIGHSMRRGARIGVLAGIALAVLYIAAGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGAVLSSPAAPAGHDY*
Ga0055471_100664572	3300003987	Natural And Restored Wetlands	MRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFSSPATPDRHGE*
Ga0055468_101604881	3300003993	Natural And Restored Wetlands	EALLDAHIGRGMRRGARIGALAGIALAVVYVVLGTHVNQFTELLGYSLGIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAMLGARFGSRASPPDG*
Ga0062593_1028237561	3300004114	Soil	VRRMRRGARIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD*
Ga0062590_1020982302	3300004157	Soil	GARIGLLAGIILAVLYIGLGTRVNEFTELLGYSLGIVGFPALFAAIPVVQGLGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAASDGQGD*
Ga0063356_1037815231	3300004463	Arabidopsis Thaliana Rhizosphere	LDAPIGRKMRRGARIGFLAGIALAVLYIALGTRVNEFTELLGYSLAVVGFPALFAAIPVVQEVGLRGGLGEYAALVSLTFPLNGLLWGAILGVVLRSPAPDVHGD*
Ga0062592_1014291761	3300004480	Soil	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG*
Ga0062594_1002204942	3300005093	Soil	VKLRHSTGTSEVVEGLLNAHIGRRMRRGATIGLLAGVTLAMLYIALDTRVNQFTELLGYSVGIVGFPTLFAVIPVVQALGLRGGHGEYAALVSLTFPLNGLLWGAVLGVLLRPRTRDDPGA*
Ga0062594_1013620802	3300005093	Soil	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGFRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPATPDGHGD*
Ga0066388_1051668072	3300005332	Tropical Forest Soil	VRRMRRGAGIGLLVGIALALLYIALGTRVTAYTELLGYSVGVIGFPALFAAIPVVQASGIRGGLGELAALVSITFPLNGILWGAILGAVLRSRAAPDGRGD*
Ga0070659_1000913172	3300005366	Corn Rhizosphere	LDAPIGRGMRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG*
Ga0070667_1023026012	3300005367	Switchgrass Rhizosphere	LDAHLVRRMRRGARIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLR
Ga0070711_1001115551	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQELGLRGGLAEYAALVSLTFPLNGALWGAILAVFLSSRAAPDGRGE*
Ga0070663_1003909453	3300005455	Corn Rhizosphere	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGQGEYAALVFLTFPLNGILWGAILGAVF
Ga0070681_116900271	3300005458	Corn Rhizosphere	LDAHIGHRMRRGARIGVLAGIALAVLYIAAGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGAVLSSPAAPAGHDY*
Ga0070698_1005541223	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LAGIALAVIYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLAFPLNGILWGAILGVLLSSPAAPDGHGD*
Ga0070679_1005159542	3300005530	Corn Rhizosphere	LLDAHIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG*
Ga0070684_1014439231	3300005535	Corn Rhizosphere	VTPLCTPRPDPEALLVAPIGRRMWRGARIGMLAGIALALVYIALGTRVNEYTELLGYSLGIVGFPALFAAIPVVQALGLRGGLGEYAALVSITFPLNGLLWGAILGVVLTSPAAPDGQGD
Ga0070696_1008967511	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRRGARIGALAGLALAGVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGQGEYAALVFLTFPLNGILWGAILGAVFRSRASPPDG*
Ga0068864_1024107242	3300005618	Switchgrass Rhizosphere	LDAPIGRGMRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGALLGAVFSSPATPDRHGG*
Ga0097621_1021064462	3300006237	Miscanthus Rhizosphere	RHSTGTSEVVEGLLNAHIGRRMRRGATIGLLAGVTLAMLYIALDTRVNQFTELLGYSVGIVGFPTLFAVIPVVQALGLRGGHGEYAALVSLTFPLNGLLWGAVLGVLLRPRTRDDPGA*
Ga0079222_120017371	3300006755	Agricultural Soil	LALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAP
Ga0075428_1008150523	3300006844	Populus Rhizosphere	LDAPIGRRVWRGARIGALAGITLAVLYIALGTRVHEFTELLGYSLVIVGFPALFAVIPVVQGLGLRGGLAEYAALVSLTFPLNGMLWGAILGVVLSSRAPPDGRGD*
Ga0075431_1003093612	3300006847	Populus Rhizosphere	LDAPIGRRVWRGARIGALAGITLAVLYIALGTRVHEFTELLGYSLVIVGFPALFAVIPVVQGLGLRGGLAEYAALVSLTFPLNGMLWGAILGVVLSSRAAPDGRGD*
Ga0075420_1009044672	3300006853	Populus Rhizosphere	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVHEFTELLGYSLVIVGFPALFAVIPVVQGLGLRGGLAEYAALVSLTFPLNGMLWGAILGVVLSSRAPPDGRGD*
Ga0075425_1018190961	3300006854	Populus Rhizosphere	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQELGLRGGLAEYAALVSLTFPLNGALWGAILAVVLSSRAAPDGRGE*
Ga0075434_1010926401	3300006871	Populus Rhizosphere	LDAHLVRRMRRGAGIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD*
Ga0075419_111371021	3300006969	Populus Rhizosphere	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVLLSSPAAPDGHGD*
Ga0111539_100748332	3300009094	Populus Rhizosphere	MRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFRSRASPPDG*
Ga0075418_119447961	3300009100	Populus Rhizosphere	MRRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLGVVGFPALFAAIPIVQTLGLRGGLGEYAALVSITFPLNGLLWGAILGVVLTSPAAPDGQGD*
Ga0114129_113718151	3300009147	Populus Rhizosphere	MRRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGLLLSSPAAPDGHGD*
Ga0111538_100596574	3300009156	Populus Rhizosphere	MRRGARIGLLAGIVLAVLYIALATRVNEFTELLGYSLVIVGFPALFAAIPVVQALGLRGGLGEYAALVSLTFPLNGILWGAILGVVLRSPPAPDGDGP*
Ga0075423_125036972	3300009162	Populus Rhizosphere	MRRGARIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD*
Ga0105104_101303872	3300009168	Freshwater Sediment	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGVRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPDGRGD*
Ga0105249_116567551	3300009553	Switchgrass Rhizosphere	MRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGLLWGA
Ga0105249_128444362	3300009553	Switchgrass Rhizosphere	LLAGVTLAMLYIALDTRVNQFTELLGYSVGIVGFPTLFAVIPVVQALGLRGGHGEYAALVSLTFPLNGLLWGAVLGVLLRPRTRDDPGA*
Ga0134125_119316442	3300010371	Terrestrial Soil	MRRGARIGALAGLALAGVYVVLGAHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGQGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPDG*
Ga0105239_106678731	3300010375	Corn Rhizosphere	MRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVVLSSPAASNGHGD*
Ga0134123_109045101	3300010403	Terrestrial Soil	MRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG*
Ga0138513_1000122402	3300011000	Soil	MRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVVLSSPAAPDGDGA*
Ga0105246_111106201	3300011119	Miscanthus Rhizosphere	MRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFSSPATPDRHSE*
Ga0157302_102173471	3300012915	Soil	MRRGARIGVLAGITLAVLYIALGTRVNEVTELLGYSLVIVGFPALFAAIPVVQELGFRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPATPDGHGD*
Ga0162653_1000045511	3300012937	Soil	RIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAVPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVVLSSPAAPDGDGA*
Ga0162651_1000445222	3300012938	Soil	HIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVVLSSPAAPDGDGA*
Ga0164300_105159132	3300012951	Soil	MLAGIALAVVYIVLGTRVNEFTELLGYSLGVVGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD*
Ga0164303_100123014	3300012957	Soil	MSRGARIGALAGIALAVLYIALGTRVNEFTELLGYSLVIVGFPVLFAVIPVVQGLGLRGGLAEYAVLVSLTFPLNGILWGAILGVFLTSRAAPDGHGD*
Ga0164299_100656362	3300012958	Soil	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQELGLRGGLAEYAALVSRTFPLNGALWGAILAVFLSSRAAPDGRGE*
Ga0164309_106623101	3300012984	Soil	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQELGLRGGLAEYAALVSLTFPLNGALWGAILAVFLRSRAAPDGRGE*
Ga0164309_116104502	3300012984	Soil	MRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLIIVGFPALFVAIPVVQGLGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAAPDGHGD*
Ga0164304_100631324	3300012986	Soil	MSRGARIGALAGIALAVLYIALGTRVNEFTELLGYSLVIVGFPVLFAVIPVVQGLGLRGGLAEYAVLVSLTFPLNGILWGAILEVFLTSRAA
Ga0164304_106170172	3300012986	Soil	MWRGARIGALVGITLAVLYIALGTRVNEFTELLGYSLIIVGFPALFVAIPVVQGLGLRGGLGEYAALVALTFPLNGILWGAILGVVLSSPAAPDGHGD*
Ga0164304_111874562	3300012986	Soil	LYIALGTRVNEFTELLGYSLVIVGFPVLFAVIPVVQGLGLRGGLAEYAVLVSLTFPLNGILWGAILGVFLTSRAAPDGHGD*
Ga0164304_114766893	3300012986	Soil	MRRGARIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALL
Ga0164305_111421001	3300012989	Soil	MWRGARIGALVGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQELGLRGGLAEYAALVSLTFPLNGALWGAILAVFLSSRAAPDGRGE*
Ga0075313_11480552	3300014267	Natural And Restored Wetlands	RMWRGARIGALAGMTLVVLYIALGTRVNEFTELLGYSLVIVGFPALFPAIPVVRGLGLRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPDGRGD*
Ga0157380_133882141	3300014326	Switchgrass Rhizosphere	MRRGARIGLLAGITLAVFYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGV
Ga0157376_116054591	3300014969	Miscanthus Rhizosphere	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQALGLRGGHGEYAALVSLTFPLNGLLWGAVLGVLLRPRTRDDPGA*
Ga0132258_100603964	3300015371	Arabidopsis Rhizosphere	LDAHLVRRTRRGARIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD*
Ga0132258_101171111	3300015371	Arabidopsis Rhizosphere	MRRGARIGALAGLALAGVYVVLGAHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGQGEYAALVFLTFPLNGILWGAILGAVFRSRASPPDG*
Ga0132258_117154781	3300015371	Arabidopsis Rhizosphere	MWRGARIGALVGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPEYRGD*
Ga0132256_1001405413	3300015372	Arabidopsis Rhizosphere	MRRGARIGALAGLALAGVYVVLGAHVNRFTEPLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPDG*
Ga0132257_1003508273	3300015373	Arabidopsis Rhizosphere	MRRGARIGALAGIALAVVYVVLGTHVNRFTEPLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPDG*
Ga0132257_1042271831	3300015373	Arabidopsis Rhizosphere	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPTLFAVIPVVQGLGLRGGLAEYAALVSLTFPLNGTLWGAILAVVLSSRAAPDGRGE*
Ga0184604_100787032	3300018000	Groundwater Sediment	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGRRGGLAEYAVLVSLTFPLNGILWGVSSGSS
Ga0184620_103423581	3300018051	Groundwater Sediment	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVVLSSPAAPDGHGA
Ga0184609_102835901	3300018076	Groundwater Sediment	LDAPIGRRMWRGARIGALAGITLAVLYISLGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPDGRGD
Ga0190269_107440742	3300018465	Soil	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSRAAPDGRGD
Ga0190268_101697941	3300018466	Soil	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAAPDGHGD
Ga0190270_109087002	3300018469	Soil	LDAHIGRRMWRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGFRGGLGEYAALVSLAFPLNGILWGAILGVVLSSPATPDGHGD
Ga0210381_100813612	3300021078	Groundwater Sediment	LDAPIGRRMWRGARIGPLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGRRGGLAEYAVLVSLTFPLNGILWGVSSGSS
Ga0222622_106175202	3300022756	Groundwater Sediment	LDAPIGRRMWRGARIGPLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAGIPVVQELGRRGGLAEYAVLVSLTFPLNGILWGVSSGSS
Ga0210115_10309582	3300025791	Natural And Restored Wetlands	LDAPIGRGMRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVSLTFPLNGILWGAILGAVFSSPATPDGHGE
Ga0207660_103151441	3300025917	Corn Rhizosphere	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG
Ga0207659_104558801	3300025926	Miscanthus Rhizosphere	VKLRHSTGTSEVVEGLLNAHIGRRMRRGATIGLLAGVTLAMLYIALDTRVNQFTELLGYSVGIVGFPTLFAVIPVVQALGLRGGHGEYAALVSLTFPLNGLLWGAVLGVLLRPRTRDDPG
Ga0207690_101110041	3300025932	Corn Rhizosphere	IGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG
Ga0207676_122487371	3300026095	Switchgrass Rhizosphere	LDAPIGRGMRRGAKIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGALLGAVFSSPATPDRHSE
Ga0207674_104140602	3300026116	Corn Rhizosphere	MRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG
Ga0209593_100329502	3300027743	Freshwater Sediment	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGVRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPDGRGD
Ga0209382_100847914	3300027909	Populus Rhizosphere	LDAPIGRRVWRGARIGALAGITLAVLYIALGTRVHEFTELLGYSLVIVGFPALFAVIPVVQGLGLRGGLAEYAALVSLTFPLNGMLWGAILGVVLSSRAPPDGRGD
Ga0209382_121577381	3300027909	Populus Rhizosphere	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLGEYAALVSLTFPLNGLLWGAILGVLLSSPAAPDGHGD
Ga0247828_100099182	3300028587	Soil	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGFRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPATPDGHGD
Ga0247823_102162822	3300028590	Soil	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFRSRASPPNG
Ga0247822_103705532	3300028592	Soil	LDAHIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG
Ga0247820_101973943	3300028597	Soil	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFRSRASPPDG
Ga0307320_104694101	3300028771	Soil	LDAPIGRRMWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGILWGAILGVVLSSRAAPDGRG
Ga0307312_100604253	3300028828	Soil	MWRGARIGALAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGRRGGLAEYAVLVSLTFPLNGILWGVSSGSS
Ga0247827_107066911	3300028889	Soil	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPDG
Ga0308194_102117581	3300031421	Soil	LDAHIGRRMRRGARIGVLAGISLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAVIPVVQELGLRGGLAEYAVLVSLTFPLNGMLWGAILGVVLSSRAAPDGRGD
Ga0310886_105807182	3300031562	Soil	LDARIGRGMRRGARIGALAGIALAGVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG
Ga0310813_100159915	3300031716	Soil	LDAHLVRRMRRGARIGFLAGVALALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD
Ga0307469_111324442	3300031720	Hardwood Forest Soil	LDAHIGRRMRRGARIGVLAGIALAALYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAAPDGHGD
Ga0310904_110139761	3300031854	Soil	GARLGMLAGIALAVVYIVLGTRVNEFTELLGYSLGVVGFPALFAAIPVVQALGLRGGLGEYAALVSITFPLNGLLWGAILGVVLTSPAAPDGQGD
Ga0310900_112643141	3300031908	Soil	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGFRGGLGEYAALVSLTFLLNGILWGAILGVVLSSPAAPDGHGD
Ga0310885_101651813	3300031943	Soil	LDARIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVVR
Ga0310884_105160961	3300031944	Soil	RRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGVLWGAILGAVFRSRASPPNG
Ga0310884_109953282	3300031944	Soil	ALLDAPIGRRMWRGARIGMLAGIVLAVIYIALGTRVNEYTELLGYSLGVVGFPALFAAIPVVQALGLRGGLGEYAALVSITFPLNGLLWGAILGVVLTSPAAPDGQGD
Ga0307416_1014024302	3300032002	Rhizosphere	ALAVVYVALGTHVNRLTELLGYSLAIVGFPALFTAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFSSPATPDRHGE
Ga0310890_105374141	3300032075	Soil	LDAHIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAMLGAVFSSPA
Ga0310810_1000311118	3300033412	Soil	LALLYIALETRVTAYTELLGYSVGVLGFPALFAAIPVVQATGLRGGLGEVAALVSITFPLNGILWGAILGALLRSRAAPDGHGD
Ga0310810_105707721	3300033412	Soil	ARIGVLAGIALAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAAPDGHGD
Ga0247829_100367495	3300033550	Soil	LDAHIGRGMRRGARIGALAGIALAVVYVVLGTHVNRFTELLGYSLAIVGFPALFAAIPVVQATGLRGGLGEYAALVFLTFPLNGILWGAILGAVFRSRASPPDG
Ga0247829_104988971	3300033550	Soil	LDAHIGRRMRRGARIGVLAGITLAVLYIALGTRVNEFSELLGYSLVIVGFPALFAAIPVVQELGLRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPAAPDGHGD
Ga0247830_100245842	3300033551	Soil	MRRGARIGVLAGITLAVLYIALGTRVNEFTELLGYSLVIVGFPALFAAIPVVQELGFRGGLGEYAALVSLTFPLNGILWGAILGVVLSSPATPDGHGD
Ga0247830_105621812	3300033551	Soil	LDAHIGRRMRRGARRGFLAGLALAMLYAALGTRVHQFTELLGYSLVIVGFPALFAVIPVVQASGLRGGFGEYAAVVFLTFPLNGLLWGAILGVFLSSTAEPGGDGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078845

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences