NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F078898

Metagenome Family F078898

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078898
Family Type Metagenome
Number of Sequences 116
Average Sequence Length 71 residues
Representative Sequence MDLSKRQLLQDALAKAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Number of Associated Samples 102
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 54.31 %
% of genes near scaffold ends (potentially truncated) 45.69 %
% of genes from short scaffolds (< 2000 bps) 79.31 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (63.793 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.345 % of family members)
Environment Ontology (ENVO) Unclassified
(25.862 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.276 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.29%    β-sheet: 42.03%    Coil/Unstructured: 37.68%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF01464SLT 14.66
PF04392ABC_sub_bind 11.21
PF13467RHH_4 2.59
PF00027cNMP_binding 1.72
PF07589PEP-CTERM 1.72
PF08734GYD 1.72
PF03992ABM 0.86
PF01590GAF 0.86
PF01381HTH_3 0.86
PF13844Glyco_transf_41 0.86
PF13505OMP_b-brl 0.86
PF12697Abhydrolase_6 0.86
PF00884Sulfatase 0.86
PF01068DNA_ligase_A_M 0.86
PF01794Ferric_reduct 0.86
PF00196GerE 0.86
PF13561adh_short_C2 0.86
PF01168Ala_racemase_N 0.86
PF06742DUF1214 0.86
PF00839Cys_rich_FGFR 0.86
PF13545HTH_Crp_2 0.86
PF01227GTP_cyclohydroI 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 11.21
COG4274Uncharacterized conserved protein, contains GYD domainFunction unknown [S] 1.72
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.86
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.86
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 0.86
COG5402Uncharacterized protein, contains DUF1214 domainFunction unknown [S] 0.86

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms63.79 %
UnclassifiedrootN/A36.21 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2001200001|2001205718All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis1129Open in IMG/M
2162886007|SwRhRL2b_contig_1412170All Organisms → cellular organisms → Bacteria1294Open in IMG/M
3300000881|JGI10215J12807_1196549All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales951Open in IMG/M
3300000953|JGI11615J12901_10655805All Organisms → cellular organisms → Bacteria1193Open in IMG/M
3300001139|JGI10220J13317_10476086Not Available627Open in IMG/M
3300001430|JGI24032J14994_100393All Organisms → cellular organisms → Bacteria2297Open in IMG/M
3300001904|JGI24736J21556_1061022Not Available583Open in IMG/M
3300001990|JGI24737J22298_10148226Not Available693Open in IMG/M
3300003349|JGI26129J50193_1011374Not Available650Open in IMG/M
3300003911|JGI25405J52794_10126240Not Available578Open in IMG/M
3300004156|Ga0062589_101007615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales779Open in IMG/M
3300004281|Ga0066397_10036961Not Available823Open in IMG/M
3300004479|Ga0062595_100469879All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales932Open in IMG/M
3300004643|Ga0062591_100073603All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2081Open in IMG/M
3300004643|Ga0062591_100374709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1163Open in IMG/M
3300005159|Ga0066808_1004222Not Available1174Open in IMG/M
3300005162|Ga0066814_10074097All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium601Open in IMG/M
3300005164|Ga0066815_10043836Not Available718Open in IMG/M
3300005169|Ga0066810_10007989Not Available1483Open in IMG/M
3300005169|Ga0066810_10038250All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria891Open in IMG/M
3300005205|Ga0068999_10021613All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales975Open in IMG/M
3300005290|Ga0065712_10465551Not Available674Open in IMG/M
3300005332|Ga0066388_104421791Not Available716Open in IMG/M
3300005334|Ga0068869_101032982All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis717Open in IMG/M
3300005336|Ga0070680_100006554All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium8854Open in IMG/M
3300005336|Ga0070680_100142011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2014Open in IMG/M
3300005341|Ga0070691_10593965All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300005344|Ga0070661_101543823Not Available561Open in IMG/M
3300005356|Ga0070674_100647708All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium898Open in IMG/M
3300005366|Ga0070659_102083781Not Available510Open in IMG/M
3300005367|Ga0070667_100246284All Organisms → cellular organisms → Bacteria1597Open in IMG/M
3300005440|Ga0070705_100668897All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300005458|Ga0070681_10149428All Organisms → cellular organisms → Bacteria2263Open in IMG/M
3300005518|Ga0070699_100402273All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1238Open in IMG/M
3300005518|Ga0070699_101103386All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales728Open in IMG/M
3300005526|Ga0073909_10165080All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales934Open in IMG/M
3300005564|Ga0070664_100075712All Organisms → cellular organisms → Bacteria → Proteobacteria2891Open in IMG/M
3300005713|Ga0066905_100149672All Organisms → cellular organisms → Bacteria1679Open in IMG/M
3300005764|Ga0066903_102225637All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300005764|Ga0066903_103104482Not Available899Open in IMG/M
3300005764|Ga0066903_105815331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium648Open in IMG/M
3300005840|Ga0068870_10828271Not Available649Open in IMG/M
3300005843|Ga0068860_100156466All Organisms → cellular organisms → Bacteria → Proteobacteria2196Open in IMG/M
3300005937|Ga0081455_10000051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria123542Open in IMG/M
3300006058|Ga0075432_10093897All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1101Open in IMG/M
3300006196|Ga0075422_10182916All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus aquaticus853Open in IMG/M
3300006852|Ga0075433_10877178Not Available783Open in IMG/M
3300006881|Ga0068865_100139892All Organisms → cellular organisms → Bacteria1824Open in IMG/M
3300006904|Ga0075424_102818583Not Available506Open in IMG/M
3300006954|Ga0079219_11185899Not Available659Open in IMG/M
3300009094|Ga0111539_10001365All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria32515Open in IMG/M
3300010046|Ga0126384_12444758Not Available506Open in IMG/M
3300010047|Ga0126382_10668675Not Available866Open in IMG/M
3300010047|Ga0126382_12089473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium542Open in IMG/M
3300010359|Ga0126376_10791926Not Available924Open in IMG/M
3300010359|Ga0126376_10826509Not Available907Open in IMG/M
3300010359|Ga0126376_11942207Not Available629Open in IMG/M
3300010362|Ga0126377_10258685All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1698Open in IMG/M
3300010362|Ga0126377_10594956Not Available1150Open in IMG/M
3300010371|Ga0134125_12989419Not Available513Open in IMG/M
3300010397|Ga0134124_11210596All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium776Open in IMG/M
3300010400|Ga0134122_10890347Not Available860Open in IMG/M
3300012506|Ga0157324_1015568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium713Open in IMG/M
3300012507|Ga0157342_1007577All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1056Open in IMG/M
3300012509|Ga0157334_1071157Not Available523Open in IMG/M
3300012519|Ga0157352_1019707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium806Open in IMG/M
3300012884|Ga0157300_1043470Not Available684Open in IMG/M
3300012892|Ga0157294_10004501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae2112Open in IMG/M
3300012893|Ga0157284_10223323Not Available580Open in IMG/M
3300012899|Ga0157299_10037107All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1027Open in IMG/M
3300012901|Ga0157288_10245349Not Available598Open in IMG/M
3300012914|Ga0157297_10005346All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2506Open in IMG/M
3300012957|Ga0164303_10641313All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis706Open in IMG/M
3300015371|Ga0132258_10225464All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4563Open in IMG/M
3300015371|Ga0132258_10416749All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3340Open in IMG/M
3300015372|Ga0132256_100002510All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria15508Open in IMG/M
3300015372|Ga0132256_100166395All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → unclassified Flavobacterium → Flavobacterium sp. LC2016-012228Open in IMG/M
3300015374|Ga0132255_100770784Not Available1433Open in IMG/M
3300015374|Ga0132255_101778716All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales936Open in IMG/M
3300019356|Ga0173481_10000014All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales25684Open in IMG/M
3300019362|Ga0173479_10000950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae6029Open in IMG/M
3300022893|Ga0247787_1038913All Organisms → cellular organisms → Bacteria → Proteobacteria682Open in IMG/M
3300023057|Ga0247797_1024390All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis795Open in IMG/M
3300023069|Ga0247751_1062905Not Available635Open in IMG/M
3300023073|Ga0247744_1016821All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1025Open in IMG/M
3300024325|Ga0247678_1094916Not Available507Open in IMG/M
3300025711|Ga0207696_1120145Not Available709Open in IMG/M
3300025910|Ga0207684_10849384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales770Open in IMG/M
3300025912|Ga0207707_10481523All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300025912|Ga0207707_10873387Not Available745Open in IMG/M
3300025917|Ga0207660_10724880All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales811Open in IMG/M
3300025921|Ga0207652_11193227Not Available663Open in IMG/M
3300025944|Ga0207661_10434269All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1194Open in IMG/M
3300025945|Ga0207679_10003586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales9618Open in IMG/M
3300026088|Ga0207641_12215193All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300026142|Ga0207698_10012369All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14625581Open in IMG/M
3300026733|Ga0207550_100401Not Available1045Open in IMG/M
3300026803|Ga0207549_104382Not Available657Open in IMG/M
3300026841|Ga0207490_1002837All Organisms → cellular organisms → Bacteria → Proteobacteria780Open in IMG/M
3300026867|Ga0207475_1003579All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales882Open in IMG/M
3300027115|Ga0207488_100937All Organisms → cellular organisms → Bacteria → Proteobacteria694Open in IMG/M
3300027252|Ga0209973_1066357Not Available560Open in IMG/M
3300027438|Ga0207564_106240Not Available565Open in IMG/M
3300027617|Ga0210002_1002649All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2593Open in IMG/M
3300027775|Ga0209177_10229538All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300027821|Ga0209811_10291000Not Available628Open in IMG/M
3300027907|Ga0207428_10139151All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1854Open in IMG/M
3300028587|Ga0247828_10445640All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales757Open in IMG/M
3300028589|Ga0247818_10769245All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales671Open in IMG/M
(restricted) 3300031150|Ga0255311_1000098All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales10566Open in IMG/M
(restricted) 3300031248|Ga0255312_1075685Not Available813Open in IMG/M
3300031716|Ga0310813_10423059All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300031908|Ga0310900_10049633All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2456Open in IMG/M
3300032144|Ga0315910_10324884All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1170Open in IMG/M
3300033004|Ga0335084_10118681All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2750Open in IMG/M
3300034819|Ga0373958_0000530All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root14624770Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.34%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil9.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.90%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere6.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil5.17%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.31%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.45%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.45%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.45%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.59%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.59%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.59%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.72%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.72%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil1.72%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere1.72%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.72%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.86%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.86%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2001200001Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150EnvironmentalOpen in IMG/M
2162886007Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001430Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5EnvironmentalOpen in IMG/M
3300001904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2Host-AssociatedOpen in IMG/M
3300001990Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3Host-AssociatedOpen in IMG/M
3300003349Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PMHost-AssociatedOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005159Soil and rhizosphere microbial communities from Laval, Canada - mgLPBEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005164Soil and rhizosphere microbial communities from Laval, Canada - mgLACEnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005205Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300012506Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610Host-AssociatedOpen in IMG/M
3300012507Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610Host-AssociatedOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012519Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610EnvironmentalOpen in IMG/M
3300012884Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2EnvironmentalOpen in IMG/M
3300012892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1EnvironmentalOpen in IMG/M
3300012893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300022893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4EnvironmentalOpen in IMG/M
3300023057Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6EnvironmentalOpen in IMG/M
3300023069Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S049-202B-5EnvironmentalOpen in IMG/M
3300023073Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S154-409C-5EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025711Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026733Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A1-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026803Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A1-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026841Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-10 (SPAdes)EnvironmentalOpen in IMG/M
3300026867Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027115Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A3-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027252Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027438Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027617Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
20012195372001200001SoilMDLSKRQLLQDALAKAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
SwRhRL2b_0146.000059202162886007Switchgrass RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
JGI10215J12807_119654913300000881SoilNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
JGI11615J12901_1065580523300000953SoilMDLSKRQLLQKALEKASEHNSFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
JGI10220J13317_1047608613300001139SoilALNVRYWRKAKRTISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
JGI24032J14994_10039333300001430Corn, Switchgrass And Miscanthus RhizosphereMSAIGARQSGQISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
JGI24736J21556_106102223300001904Corn RhizosphereFLALNVRYWRKAKRTISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
JGI24737J22298_1014822623300001990Corn RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLXPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
JGI26129J50193_101137413300003349Arabidopsis Thaliana RhizosphereDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
JGI25405J52794_1012624013300003911Tabebuia Heterophylla RhizosphereTANAGFRAQCGQTSIPLRTQNVVRRYRTMDASKRQLLQKALEKATEHESLIAVSTPAGKRILLRPDFICYETYVEGTDSDGQLLTLTYEQXASVDAE*
Ga0062589_10100761523300004156SoilRTMDVSKRQLLQKALEKANEKNSFIAVCAPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0066397_1003696123300004281Tropical Forest SoilMDLSKRQMLQKALEKATEHESLIAVSTPAGKRILLRPDFICYETYVEGTDSDGQLLTLTYEQIASVDAE*
Ga0062595_10046987923300004479SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0062591_10007360323300004643SoilMDVSKRQMLQKALEKANEKSSFIAVCTPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0062591_10037470913300004643SoilMDVSKRQLLQKALEKANEHSSFIAISTPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0066808_100422233300005159SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0066814_1007409713300005162SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0066815_1004383623300005164SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0066810_1000798913300005169SoilMDLSKRQLLQEALVKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTDADGQLLTLTYEQIAAV
Ga0066810_1003825033300005169SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTDPDGQLLTLTYEQIASVDVE*
Ga0068999_1002161313300005205Natural And Restored WetlandsMDVSKRQLLQKALEKKSNEHSSFIAISTPLGMCILMRPDFTCETYVEGTGADGQLLTLTYGHTASVDVE*
Ga0065712_1046555123300005290Miscanthus RhizosphereMDVSKRQLLQKALEKANEKNSFIAVCAPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0066388_10442179113300005332Tropical Forest SoilMSAFGRKAGRDPAPARTESEVRRYKTMDLSKRQLLQKALEKATEQNSHIAVSTPAGKRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0068869_10103298223300005334Miscanthus RhizosphereRTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0070680_10000655413300005336Corn RhizosphereISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0070680_10014201133300005336Corn RhizosphereMDLRKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0070691_1059396523300005341Corn, Switchgrass And Miscanthus RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0070661_10154382313300005344Corn RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVGVE*
Ga0070674_10064770813300005356Miscanthus RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLL
Ga0070659_10208378123300005366Corn RhizosphereMDVSKRQQLQKALTKVEGHHSFIAVSTPAGKRILLRPDFVCYETYVEGTDSDGQMLTLTY
Ga0070667_10024628413300005367Switchgrass RhizosphereNGSQQAAELQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0070705_10066889723300005440Corn, Switchgrass And Miscanthus RhizosphereARTQNEVRRYRTMDLRKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0070681_1014942823300005458Corn RhizosphereMDLSKRQLLQQALEKADAHHALIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0070699_10040227333300005518Corn, Switchgrass And Miscanthus RhizosphereMDLRKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVD
Ga0070699_10110338623300005518Corn, Switchgrass And Miscanthus RhizosphereQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0073909_1016508013300005526Surface SoilMDLSKRQLLQEALAKAEAHHAFIAISTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0070664_10007571213300005564Corn RhizosphereQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0066905_10014967223300005713Tropical Forest SoilMDPSKRQLLQKALEKATEHGSLIAISTPAGKRIMLRPDFICYETYVEGTDGDGQLLTLPYEQIASVDVE*
Ga0066903_10222563723300005764Tropical Forest SoilMDLSKRQLLQKALEKATEHSSHIAVSTPAGKRILLRPDFTCYETYVEGTGVDGQLLTLTYEQIASVDVE*
Ga0066903_10310448223300005764Tropical Forest SoilMDLSKRQLLQKALEKATEQNSHIAVSTPAGKRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0066903_10581533123300005764Tropical Forest SoilMDPSKRQLLQKAFEKATEHNSHIAVSTPAGKRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0068870_1082827123300005840Miscanthus RhizosphereARTQNAVRRYRTMDLSKRQLLQDALARAEAQHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0068860_10015646613300005843Switchgrass RhizosphereQNAVRRYRTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0081455_10000051183300005937Tabebuia Heterophylla RhizosphereMDASKRQLLQKALEKATEHESLIAVSTPAGKRILLRPDFICYETYVEGTDSDGQLLTLTYEQIASVDAE*
Ga0075432_1009389713300006058Populus RhizosphereVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0075422_1018291623300006196Populus RhizosphereMDLSKRQLLQEALAKTEAPHSHIAITTPAGKRILLRPDFTCYETYVEGTGDDGQLLTLTYEQIASVDVE*
Ga0075433_1087717823300006852Populus RhizosphereMDLSKRQLLQKAFEKANERSSLIAVSTPAGRRILLRPDFTCYETYVEGTDGDGQLLTLTYDQIASVDVE*
Ga0068865_10013989213300006881Miscanthus RhizosphereARTQNAVRRYRTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0075424_10281858323300006904Populus RhizosphereRQMLQKALEKANEKSSFIAVCTPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0079219_1118589923300006954Agricultural SoilMDLNKRQMLQKALAKAEANHAFIAVDTPSGNRILLRPDFTCYETYIEGTGADGQMLTLTYEQIASVDVA*
Ga0111539_10001365273300009094Populus RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTDPDGQLLTLTYEQIASVDVE*
Ga0126384_1244475813300010046Tropical Forest SoilMDLSKRQMLQKALEKATEHESLIAVSTPSGKRILLRPDFICYETYVEGTDGDGQLLTLTYEQIASVDVE*
Ga0126382_1066867523300010047Tropical Forest SoilMDLSKRQMLQKALEKATEHESLIAISTPAGKRILLRPDFICYETYVEGTDSDGQLLTLTYEQIASVDAE*
Ga0126382_1208947323300010047Tropical Forest SoilMDLSKRQLLQKALEKATEPGSHIAVSTPAGKRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0126376_1079192623300010359Tropical Forest SoilMGLCTANAWFRAQSGQTSIPARTQSAVRRYRAMDLSKRQMLQKALEKATEHESLIAVSTPAGKRILLRPDFICYETYVEGTDSDGQLLTLTYEQIASVDAE*
Ga0126376_1082650933300010359Tropical Forest SoilLQKALEKATEQNSHIAVSTPAGKRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0126376_1194220723300010359Tropical Forest SoilMDLSKRQLLQKALEKATKHESLIAVSTPSGKRILLRPDFICYETYVEGTDGDGQLLTLTYEQIASVDVE*
Ga0126377_1025868523300010362Tropical Forest SoilMDLSKRQLLQKALEKATEHESLIAVSTPSGKRILLRPDFICYETYVEGTDGDGQLLTLTYEQIASVDVE*
Ga0126377_1059495623300010362Tropical Forest SoilMDLSKRQLLQKALEKATEPGSHIAVSTPAGKRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0134125_1298941913300010371Terrestrial SoilMDLSKRQLLQKALAKVEGQHSYIAVSTPAGHRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVD
Ga0134124_1121059623300010397Terrestrial SoilMDLSKRQLLQGALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0134122_1089034723300010400Terrestrial SoilMDLSKRQLLQKALAKVEGQHSYIAVSTPAGHRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0157324_101556813300012506Arabidopsis RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLT
Ga0157342_100757713300012507Arabidopsis RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTDPDGQLL
Ga0157334_107115713300012509SoilLARTQNAVRRYRTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0157352_101970713300012519Unplanted SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQ
Ga0157300_104347013300012884SoilMDLSKRQLLQEALAKTEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0157294_1000450133300012892SoilMDLSKRQLLQDALARAEVHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0157284_1022332323300012893SoilLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0157299_1003710713300012899SoilDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0157288_1024534913300012901SoilTMDVSKRQLLQKALEKANEHSSFIAISTPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0157297_1000534633300012914SoilMDLSKRQLLQGALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0164303_1064131323300012957SoilTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE*
Ga0132258_1022546473300015371Arabidopsis RhizosphereMDLSKRQLLQKALEKAGEQNSHIAVSTPSGTRILLRPDFTCYETYVEGTDGDGQLLTLTYEQIASVDVE*
Ga0132258_1041674953300015371Arabidopsis RhizosphereMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFICYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0132256_100002510103300015372Arabidopsis RhizosphereMDLSKRQLLQKALEKAGVQNSHIAVSTPSGTRILLRPDFTCYETYVEGTDGDGQLLTLTYEQIASVDVE*
Ga0132256_10016639523300015372Arabidopsis RhizosphereMDLSKRQLLQDALAKAEARHASIAISTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE*
Ga0132255_10077078433300015374Arabidopsis RhizosphereMDLSKRQLLQEALAKAEAHHAFIAISTPSGSRILLRPDFTCYETYVEGTDPDGQLLTLTYEQIASVDVE*
Ga0132255_10177871613300015374Arabidopsis RhizosphereRPGPETKLIVCRYKKMDLSKRQLLQEALVKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTDADGQLLTLTYEQIAAVNVE*
Ga0173481_10000014293300019356SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0173479_1000095063300019362SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0247787_103891313300022893SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQI
Ga0247797_102439013300023057SoilVRRYRTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0247751_106290523300023069SoilALNVRYWRKAKRTISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0247744_101682113300023073SoilAKRTISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0247678_109491623300024325SoilMDLSKRQLLQGALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0207696_112014523300025711Switchgrass RhizosphereTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207684_1084938413300025910Corn, Switchgrass And Miscanthus RhizospherePARTQNAVRRYRTMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0207707_1048152333300025912Corn RhizosphereMDLRKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207707_1087338713300025912Corn RhizosphereMDLSKRQLLQQALEKADAHHALIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207660_1072488013300025917Corn RhizosphereQAAELQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0207652_1119322713300025921Corn RhizosphereLARTQNEVRRYRTMDLRKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207661_1043426923300025944Corn RhizosphereMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTDPDGQLLTLTYEQIASVDVE
Ga0207679_10003586123300025945Corn RhizosphereWRKAKRTISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207641_1221519313300026088Switchgrass RhizosphereMDVSKRQMLQKALEKANEKSSFIAVCTPSGTRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0207698_1001236963300026142Corn RhizosphereLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207550_10040123300026733SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLT
Ga0207549_10438223300026803SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVE
Ga0207490_100283723300026841SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207475_100357913300026867SoilIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207488_10093723300027115SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLT
Ga0209973_106635723300027252Arabidopsis Thaliana RhizosphereMDVSKRQLLQKALEKANEHSSFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0207564_10624013300027438SoilMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTY
Ga0210002_100264933300027617Arabidopsis Thaliana RhizosphereMSAIGARQSGQISIPARTQNAVRRYRTMDLSKRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0209177_1022953823300027775Agricultural SoilMDLNKRQMLQKALAKAEANHAFIAVDTPSGNRILLRPDFTCYETYIEGTGADGQMLTLTYEQIASVDVA
Ga0209811_1029100013300027821Surface SoilMDLSKRQLLQEALAKAEAHHAFIAISTPSGSRILLRPDFTCYETYVEGTGPDGQLL
Ga0207428_1013915123300027907Populus RhizosphereMDLSKRQLLQEALAKTEAPHSHIAITTPAGKRILLRPDFTCYETYVEGTGDDGQLLTLTYEQIASVDVE
Ga0247828_1044564023300028587SoilRQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0247818_1076924513300028589SoilQLLQEALAKAEAHHAYIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
(restricted) Ga0255311_100009833300031150Sandy SoilMDLSKRRLLQDALAKAEAHHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
(restricted) Ga0255312_107568523300031248Sandy SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLRPDFTCYETYVEGTGPDGQLLTLTYEQIASVDVG
Ga0310813_1042305923300031716SoilMDLSKRQLLQKALEKASEHNSFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0310900_1004963323300031908SoilMDLSKRQLLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASIDVE
Ga0315910_1032488423300032144SoilMDPSKRQLLQDALARAEARHAFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0335084_1011868143300033004SoilMDLSKRQLLQKALEKANEHSSFIAVSTPSGTRILLRPDFTCYETYVEGTGADGQLLTLTYEQIASVDVE
Ga0373958_0000530_4583_47683300034819Rhizosphere SoilLQDALARAEAHHAFIAVSTPSGSRILLHPDFTCYETYVEGTGPDGQLLTLTYEQIASVDV

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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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