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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F078950 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 116 |
| Average Sequence Length | 48 residues |
| Representative Sequence | MPKSASDHLHNDADRGKGSQEPDERTQSGNNSMKDQLGHRNPDPMQD |
| Number of Associated Samples | 109 |
| Number of Associated Scaffolds | 116 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 98.26 % |
| % of genes near scaffold ends (potentially truncated) | 96.55 % |
| % of genes from short scaffolds (< 2000 bps) | 93.10 % |
| Associated GOLD sequencing projects | 105 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.20 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (77.586 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (11.207 % of family members) |
| Environment Ontology (ENVO) | Unclassified (32.759 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.690 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.20 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 116 Family Scaffolds |
|---|---|---|
| PF12710 | HAD | 36.21 |
| PF13525 | YfiO | 1.72 |
| PF02222 | ATP-grasp | 0.86 |
| PF14060 | DUF4252 | 0.86 |
| PF08240 | ADH_N | 0.86 |
| PF10079 | BshC | 0.86 |
| PF00990 | GGDEF | 0.86 |
| PF00691 | OmpA | 0.86 |
| PF12840 | HTH_20 | 0.86 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 77.59 % |
| All Organisms | root | All Organisms | 22.41 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 11.21% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 9.48% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 7.76% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 7.76% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 6.90% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 6.03% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 5.17% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 4.31% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 3.45% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.45% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.45% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 3.45% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.45% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 2.59% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 2.59% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 2.59% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 2.59% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.72% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.72% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.72% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 1.72% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 1.72% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.86% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.86% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.86% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 0.86% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.86% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.86% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000567 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 | Environmental | Open in IMG/M |
| 3300001471 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 | Environmental | Open in IMG/M |
| 3300003505 | Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924) | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300005181 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
| 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Environmental | Open in IMG/M |
| 3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
| 3300006041 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006354 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 | Environmental | Open in IMG/M |
| 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
| 3300009618 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100 | Environmental | Open in IMG/M |
| 3300009630 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 | Environmental | Open in IMG/M |
| 3300009646 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 | Environmental | Open in IMG/M |
| 3300009839 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG | Environmental | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014153 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG | Environmental | Open in IMG/M |
| 3300014156 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG | Environmental | Open in IMG/M |
| 3300014158 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300014489 | Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG | Environmental | Open in IMG/M |
| 3300014638 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG | Environmental | Open in IMG/M |
| 3300014654 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG | Environmental | Open in IMG/M |
| 3300015193 | Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream) | Environmental | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
| 3300017928 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1 | Environmental | Open in IMG/M |
| 3300017935 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 | Environmental | Open in IMG/M |
| 3300017941 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300017946 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10 | Environmental | Open in IMG/M |
| 3300017972 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300017988 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG | Environmental | Open in IMG/M |
| 3300017996 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40 | Environmental | Open in IMG/M |
| 3300018012 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5 | Environmental | Open in IMG/M |
| 3300018013 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100 | Environmental | Open in IMG/M |
| 3300018017 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40 | Environmental | Open in IMG/M |
| 3300018020 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100 | Environmental | Open in IMG/M |
| 3300018024 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100 | Environmental | Open in IMG/M |
| 3300018040 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 | Environmental | Open in IMG/M |
| 3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
| 3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
| 3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018086 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG | Environmental | Open in IMG/M |
| 3300019787 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300023250 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14 | Environmental | Open in IMG/M |
| 3300024295 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5 | Environmental | Open in IMG/M |
| 3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300025404 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes) | Environmental | Open in IMG/M |
| 3300026377 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B | Environmental | Open in IMG/M |
| 3300026482 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B | Environmental | Open in IMG/M |
| 3300026496 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A | Environmental | Open in IMG/M |
| 3300026514 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B | Environmental | Open in IMG/M |
| 3300026920 | Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes) | Environmental | Open in IMG/M |
| 3300027381 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027383 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027439 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027559 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027570 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027575 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027605 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027738 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
| 3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Host-Associated | Open in IMG/M |
| 3300028792 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S | Environmental | Open in IMG/M |
| 3300028828 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202 | Environmental | Open in IMG/M |
| 3300028866 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2 | Environmental | Open in IMG/M |
| 3300028867 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3 | Environmental | Open in IMG/M |
| 3300028874 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1 | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300029922 | III_Fen_E1 coassembly | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300029945 | I_Bog_N2 coassembly | Environmental | Open in IMG/M |
| 3300030011 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3 | Environmental | Open in IMG/M |
| 3300030509 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2 | Environmental | Open in IMG/M |
| 3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030688 | II_Bog_N2 coassembly | Environmental | Open in IMG/M |
| 3300030815 | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031244 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_2 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031718 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 | Environmental | Open in IMG/M |
| 3300031918 | III_Fen_N3 coassembly | Environmental | Open in IMG/M |
| 3300032892 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
| 3300033982 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction | Environmental | Open in IMG/M |
| 3300034091 | Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPhiseqgaiiFebDRAFT_1048732881 | 3300000364 | Soil | LSEHAADHLKNDSDRGKGSLEPDERKQDGNNSMQGQLPHRNPHPIAEGADSDF |
| JGI12270J11330_100299431 | 3300000567 | Peatlands Soil | MPTSVSDHLHNDADRGKGSQEPDERTQAGNNSMQGQLSHRNPD |
| JGI12712J15308_100809222 | 3300001471 | Forest Soil | MPRSTSDHLKNDPDRGKGSEEPDDRTQPSNNSMTDQLGHRNPSALQDGADSDF |
| JGIcombinedJ51221_101882331 | 3300003505 | Forest Soil | MTKNVSDPLVNDPDRGKGSLEPDERTQEGNNSMQDQLGHRNPDPMQDGADSDFPEPG |
| Ga0062384_1008508002 | 3300004082 | Bog Forest Soil | MTKSASDHLRNDADRGKGSQEPDERTQSGNNSLTDQLGHRNPDPMQDGADSDFP |
| Ga0062389_1028436901 | 3300004092 | Bog Forest Soil | VGRVMIKSASDHLLNDADRGKGSEEPDERNQSGNNSMSGQLGH |
| Ga0066678_101243703 | 3300005181 | Soil | VGGLVVDHAADHLKDDSDRGKGSLEPDERKQDGNNSMQGQL |
| Ga0066388_1007741704 | 3300005332 | Tropical Forest Soil | MPNNASDHLLNDADRGKGSYEPDDPTQPSNNSMRGQLAHRNQHP |
| Ga0070707_1002481271 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MTKSVSDHLQNDADRGKGSMEPDERTQAGNNSMKDQLGHRHPDPM |
| Ga0070699_1022124141 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MPKSASDHLHNDADRGKGSQEPDERTQSGNNSMKDQLGHRNPDPMQD |
| Ga0070763_101127303 | 3300005610 | Soil | MPKSTSDHLLDDADRGKGSQEPDERGQSGNNSMKDQLGHRNPDPMQDGADSDFPEP |
| Ga0075023_1005684861 | 3300006041 | Watersheds | MPKSVSDHLHNDADRGKGSLEPDERTQTGNNSMKAQLSHRNPHPMVDGADSDFP |
| Ga0075017_1002915022 | 3300006059 | Watersheds | MPKSVSDHLLNDADRGKGSKEPDERGQSGNNSMKDQLGHR |
| Ga0075017_1003944092 | 3300006059 | Watersheds | MSKSSSDHLLNDADRGKGSQEPDERTQSGNNSMQGQ |
| Ga0075017_1011548493 | 3300006059 | Watersheds | MSTNASDHLLDDADRGKGSLEPDERTQLGNNSMQGQLSHR |
| Ga0075015_1004454001 | 3300006102 | Watersheds | MSTNASDHLLDDADRGKGSLEPDERTQLGNNSMQGQLSHRNPDP |
| Ga0070765_1014359651 | 3300006176 | Soil | MPDSTSDHLKNDPDRHKGSLEPDERKEAGNNSMTGQLSHRDEHP |
| Ga0075021_104529791 | 3300006354 | Watersheds | MTSVSDHLKDDADRGKGSQEPDDRTQSGNNSMKDQLGHRNPDPMQDGADSDFPEPGHSPE |
| Ga0099794_102390762 | 3300007265 | Vadose Zone Soil | MSDHAADHLKNDSDRGKGSLEPDNRKQPGNNSMNGQLPHRHPHP |
| Ga0099828_117638601 | 3300009089 | Vadose Zone Soil | MPTSVSDHLHNDADRGKGSLEPDERTQAGNNSMKDQLGHRHPDPMQDGADSDFP |
| Ga0116214_10625052 | 3300009520 | Peatlands Soil | MPKSASDHLLNDADRGKGSQEPDERTQSGNNSMKGQLGHRNPDPMKDGADSDFPEPG |
| Ga0116127_11447612 | 3300009618 | Peatland | MPKSVSDHLHNDADRGKGSQEPDDSTQAGNNSMKGQLSH |
| Ga0116114_11506471 | 3300009630 | Peatland | MPNSVSDHLKNDADRGKGSKEPDERSQSGNNSMKDQL |
| Ga0116132_11462061 | 3300009646 | Peatland | MPKSTSDHLLNDADRGKGSQEPDERNQSGNNSMKDQLGH |
| Ga0116223_101501261 | 3300009839 | Peatlands Soil | MPKSVSDHLKNDADRGKGSKEPDGRTQSGNNSMKDQLGHRNPDPMQDGADSDFPEPGQSP |
| Ga0126384_111120462 | 3300010046 | Tropical Forest Soil | MGEHVTDHLKNDSDRGKGSLEPDERLQASNNSMQGQLPHRNPHPLAEGGGQLLQVVLA |
| Ga0137388_101118634 | 3300012189 | Vadose Zone Soil | MPKSVSDHLHNDADRGKGSLEPDERTQAGNNSMKDQLGHRHPDPMQDGADSDFPEPGHSP |
| Ga0137363_101630121 | 3300012202 | Vadose Zone Soil | MSDHAADHLKNDSHRGKGSLEPDNRKQPGNNSMNGQLPHRHPHPEADGADS |
| Ga0137385_104958101 | 3300012359 | Vadose Zone Soil | VVDHAADHLKDDSDRGKGSLEPDERKQDGNNSMQGQL |
| Ga0137390_108206132 | 3300012363 | Vadose Zone Soil | MPTSVSDHLHNDADRGKGSLEPDERTQAGNNSMKDQLGHR |
| Ga0137416_101796532 | 3300012927 | Vadose Zone Soil | MLKSTSDHLLNDADRGKGSQEPDERTQSSNNSMKD |
| Ga0137407_124084851 | 3300012930 | Vadose Zone Soil | VVEHAADHLKNDSDRGKGSLEPDERKQDDNNSMQGQLPHRNPHPLAEGADSDFPEPGQS |
| Ga0181527_11929192 | 3300014153 | Bog | MPNSVSDHLKNDADRGKGSKEPDERSQSGNNSMKDQLGHRNPDPMQDG |
| Ga0181518_102642182 | 3300014156 | Bog | MPKSKSDHLLNDSDRGKGSQEPDERGQSGNNSMQGQLGHRNPDPIQDGADS |
| Ga0181521_102895562 | 3300014158 | Bog | MPKSKSDHLLNDSDRGKGSQEPDERGQSGNNSMQGQLGHRNPD |
| Ga0181531_104660252 | 3300014169 | Bog | LPKSVSDHLHDAADRVTDERTQSGNRSMKDQLGHRNSEPMQDGADSDFP* |
| Ga0181537_111821201 | 3300014201 | Bog | MADHATDHLKDDPDRGKGGQEPDNPNQPGNNSMNGQLGHRDNHPLVPGADSDFP |
| Ga0182018_100428251 | 3300014489 | Palsa | MPKSVSDHLKNDADRGKGSKEPDERSQSTNNSMTDQLGHRNPDPMQDGADSDF |
| Ga0181536_103699782 | 3300014638 | Bog | MPKSKSDHLLNDSDRGKGSQEPDERGQSGNNSMQGQLGHRNP |
| Ga0181525_108231141 | 3300014654 | Bog | MPKSKSDHLLDDADRGKGAKEPDDRAQSGNNSMTDQLGHRNPDPM |
| Ga0167668_10300951 | 3300015193 | Glacier Forefield Soil | MPKSVSDHLKNDPDRGKGSEEPDDRGQKGNNTLKGQLGHRNPDAMQDGADSDFP |
| Ga0137409_111774822 | 3300015245 | Vadose Zone Soil | VSGHAADHLKNDSDRGKGSLEPDERKQDGNNSMQGQLSHRNPHPLADG |
| Ga0187818_104150592 | 3300017823 | Freshwater Sediment | MPKSKSDHLLNDSDRGKGSQEPDERTQSGNNSMQGQLGHRNPDPMQEGADSDFPEPGHS |
| Ga0187806_12821281 | 3300017928 | Freshwater Sediment | MLKSVSDHLQDDADRGKGSKEPDERTQSGNNSMKDQLSHRNPDPLQD |
| Ga0187848_103826382 | 3300017935 | Peatland | MPTSVSDHLHNDADRGKGSEEPDERGQSGNNSMQGQLGHR |
| Ga0187850_100625993 | 3300017941 | Peatland | MPKSTSDHLLNDADRGKGSQEPDERNQSGNNSMKDQLGHRNPDPLQD |
| Ga0187819_104815151 | 3300017943 | Freshwater Sediment | MTKSVSDHLHNDADRGKGSKEPDERGQSGNNSMKDQLSHRNPDPLQDGADSD |
| Ga0187879_102947311 | 3300017946 | Peatland | MLKSASDHLLNDADRGKGSQEPDERTQEGNNSMQGQLGHRNPDPMQDGADSDFPEP |
| Ga0187781_100964563 | 3300017972 | Tropical Peatland | MPKSKSDHLLNDSDRGKGSQEPDERTQSGNNSMQGQLGHRNPDPMQDGADSDFPEPG |
| Ga0187781_112210692 | 3300017972 | Tropical Peatland | MPKSASDHLQNDSDRGKGSLEPDERNQPGNNSMKGQLSHRDP |
| Ga0181520_107517582 | 3300017988 | Bog | MTNSASDHLKNDADRGKGSEEPDERTQDGNNSMKDQLGHRNPDPMQDGADSDFPE |
| Ga0187891_10881051 | 3300017996 | Peatland | MPKNKSDHLLNDSDRGKGSQEPDERGQSGNNSMQGQ |
| Ga0187810_103271011 | 3300018012 | Freshwater Sediment | MPKSISDHLLNDADRGKGSLEPDERTQTGNNSMKAQLSHRNPDPMMDGADSD |
| Ga0187873_13640502 | 3300018013 | Peatland | MPTSVSDHLHNDADRGKGSEEPDERGQSGNNSMKDQLGH |
| Ga0187872_100804063 | 3300018017 | Peatland | MPKSKSDHLLNDSDRGKGSQEPDERGQSGNNSMQGQLGHRNPDP |
| Ga0187861_104809052 | 3300018020 | Peatland | MPKSVSDHLHNDADRGKGSQEPDDRTQPGNNSMRDQLGHRNPDPLVDGADSDFPE |
| Ga0187881_103714952 | 3300018024 | Peatland | MPKSVSDHLHNDADRGKGSQEPDDRTQPGNNSMRDQLGHRNPDPLVDG |
| Ga0187862_101052524 | 3300018040 | Peatland | MLKSKSDHLLNDSDRGKGSQEPDERGQSGNNSMQGQ |
| Ga0187871_108356352 | 3300018042 | Peatland | MPASASDHLRNDADRGKGSKEPDERSQSGNNSMKGQLSHRDKSPLVEGAD |
| Ga0187887_103675631 | 3300018043 | Peatland | MPKSVSDHLKNDADRGKGSKEPDERTQSGNNSMKDQ |
| Ga0187859_101807342 | 3300018047 | Peatland | MPNSVSDHLKNDADRGKGSKEPDERSQSGNNSMKDQLGHRNPDPMQDGA |
| Ga0187859_106569652 | 3300018047 | Peatland | MPKSASDHLRNDADRGKGSQEPDERGQAGNNSMKGQLSHRDQN |
| Ga0187772_103219723 | 3300018085 | Tropical Peatland | MPKSKSDHLLNDSDRGKGSQEPDERTQSGNNSMQGQLGHRNPDPMQDGADSDFP |
| Ga0187769_115497951 | 3300018086 | Tropical Peatland | MPNSASDHLRNDADRGKGSQEPDERNQPGNSSMKGQLSHRDKNPLVEG |
| Ga0182031_14279592 | 3300019787 | Bog | MPKSTSDHLLNDADRGKGSQEPDERTQKGNNSMKDQLSHRNPDPMQDGATAISRTRP |
| Ga0182031_14732422 | 3300019787 | Bog | MPKSTSDHLLNDADRGKGSQEPDERTQKGNNSMKDQLSHRNPDPMQDGADSDFPNPA |
| Ga0210399_113062042 | 3300020581 | Soil | MPTSSSDHLDNDADRGKGSKEPDDREQSGNNSMTDQLSHRNPDPMQDGADSDFP |
| Ga0210408_111804221 | 3300021178 | Soil | MPKSTSDHLLNDADRGKGSKEPDERSQSGNNSMTNQLGHRNPDPMQDGADS |
| Ga0210388_102396731 | 3300021181 | Soil | MPTSTSDHLENDPDRHKGSLEPDGPKQTGNNSMTG |
| Ga0210388_106624052 | 3300021181 | Soil | MTKNVSDPLVNDPDRGKGSLEPDERTQEGNNSMQDQLGHRNPDP |
| Ga0210389_113877672 | 3300021404 | Soil | MPDSTSDHLKNDPDRHKGSLEPDERKEAGNNSMTGQLSHRDEHPLVEGADS |
| Ga0224544_10347591 | 3300023250 | Soil | MPKSKSDHLLDDADRGKGAKEPDDRAQSGNNSMTDQLG |
| Ga0224556_10204271 | 3300024295 | Soil | MPKSTSDHLLNDADRGKGSQEPDERTQKGNNSMKDQLSHR |
| Ga0137417_13235242 | 3300024330 | Vadose Zone Soil | MPTSTSDHLLNDADRGKGSKEPDERSQSGNNSMTNQLGHRNPDPMQDGADSDFPEPGH |
| Ga0208936_10616831 | 3300025404 | Peatland | MPGSVSDHLRNDADRGKGSQEPDDRSQSGNNSMTGQLSHRD |
| Ga0257171_10755991 | 3300026377 | Soil | MTKSVSDHLHNDADRGKGSMEPDERTQAGNNSMKDQLGHRHPDPMQDGADSDF |
| Ga0257172_10180391 | 3300026482 | Soil | MPKSTSDHLLNDADRGKGSQEPDERSQSGNNSMTDQLGHRNPDPMQDGADSDFPEPGHS |
| Ga0257157_10760731 | 3300026496 | Soil | MPKSTSDHLLNDADRGKGSQEPDERSQSGNNSMKDQLGHRNPDPMQD |
| Ga0257168_10812011 | 3300026514 | Soil | MTKSTSDHLLNDADRGKGSKEPDERSQSGNNSMTD |
| Ga0208575_10253942 | 3300026920 | Soil | MPKSTSDHLLNDADRGKGSKEPDERSQSGNNSMTDQLGHRNPDPMQDGADSDFPEP |
| Ga0208983_10352762 | 3300027381 | Forest Soil | MPKSTSDHLLNDADRGKGSQEPDERSQSGNNSMKD |
| Ga0209213_11041082 | 3300027383 | Forest Soil | MPKSTSDHLLNDADRGKGSKEPDDRSQSGNNSMTDQLGHRNPDPMQDGADSDF |
| Ga0209332_10285141 | 3300027439 | Forest Soil | MPKSTSDHLLNDADRGKGSQEPDERSQSGNNSMTDQLGHRNPDPMQDGADSDFPEPGHSP |
| Ga0209222_10630601 | 3300027559 | Forest Soil | MPEKSVSDHLRNDADRGKGSKEPDERGQSGNNSMQDQLGHRNPDPMQDGADSDFPE |
| Ga0208043_11078092 | 3300027570 | Peatlands Soil | MPKSKSDHLLNDSDRGKGSQEPDERTQSGNNSMQGQLGHRNPDPMQDGADSDFPEP |
| Ga0209525_10611872 | 3300027575 | Forest Soil | MPEKSVSDHLRNDADRGKGSKEPDERGQSGNNSMQDQ |
| Ga0209329_10403902 | 3300027605 | Forest Soil | MTRSASDHLKNDDDRGKGSMEPDERGQSANSSMNGQLGHRNPHPMQ |
| Ga0208989_101015092 | 3300027738 | Forest Soil | MPKSTSDHLLNDADRGKGSKEPDDRSQSGNNSMKDQLGHRNPDPMQDGADSDF |
| Ga0209139_101823411 | 3300027795 | Bog Forest Soil | MTKSASDHLRNDADRGKGSQEPDERTQSGNNSLTDQLGHRNPDPMQDGADSDFPEPGSSP |
| Ga0209067_103654202 | 3300027898 | Watersheds | MMPTSSSDHLLNDADRGKGSLEPDERTQLGNNSMQGQLAHRNPDPMVD |
| Ga0137415_106016771 | 3300028536 | Vadose Zone Soil | MSDHAADHLKNDSDRGKGSLEPDDRSQPGNNSMNGQLPHRHPHPLADGADSDFPEPGQ |
| Ga0265334_103416221 | 3300028573 | Rhizosphere | MPKSASDHLRNDADRGKGSMEPDERGQAGNNSMKGQLSHRDTTPLVEGAD |
| Ga0307504_100537602 | 3300028792 | Soil | MGATLVEHAADHLKNDSDRGKGSLEPDERKQDGNNSMQGQLPHRNPHPLAAGA |
| Ga0307504_101490951 | 3300028792 | Soil | MPEHAADHLKNDSDRGKGSLEPDERKQAGNNSMQGQLPHRHPHPLADGADSD |
| Ga0307312_109246002 | 3300028828 | Soil | LSEHAADHLKNDSDRGKGSLEPDERKQDGNNSMQGQLPHRNPHPIA |
| Ga0302278_102968961 | 3300028866 | Bog | MPKSVSDHLKNDADRGKGSEEPDERGQSGNNSMAGQLGHR |
| Ga0302146_100578931 | 3300028867 | Bog | MPKSTSDHLLNDADRGKGSQEPDERTQKGNNSMKDQL |
| Ga0302155_100669503 | 3300028874 | Bog | MPKSVSDHLKNDADRSKGSQEPDDPGQSGNNSMNGQLGHRSPDPLQNGADSDFPEPGQSP |
| Ga0308309_110184001 | 3300028906 | Soil | MPDSTSDHLKNDPDRHKGSLEPDERKEAGNNSMTGQLSHRDEHPLVE |
| Ga0311363_101597851 | 3300029922 | Fen | MPKSVSDHLKNDADRGKGSEEPDERGQSGNNSMAGQLGHRSPDPLQDGADSDFPEPGQ |
| Ga0311340_110653072 | 3300029943 | Palsa | MPKSVSDHLHNDADRGKGSQEPDDRTQSGNNSMKDQLGHRNPDPMQDGADSDFPEP |
| Ga0311330_104499572 | 3300029945 | Bog | MPKSVSDHLKNDADRGKGSEEPDERGQSGNNSMAGQLG |
| Ga0302270_106274282 | 3300030011 | Bog | MPKSVSDHLKNDADRGKGSEEPDERGQSGNNSMAGQLGHRSPDPLQDGADSDF |
| Ga0302183_102013761 | 3300030509 | Palsa | MPKSKSDHLLDDADRGKGAKEPDDRAQSGNNSMTDQLGHRNPDPLQNG |
| Ga0311355_109474341 | 3300030580 | Palsa | MPKSVSDHLKNDADRGKGSQEPDERKQAGNNSMTDQLG |
| Ga0311345_108769361 | 3300030688 | Bog | MPKSVSDHLKNDADRGKGSEEPDERGQSGNNSMAGQLGHRSPDPLQDGADSDFPEPG |
| Ga0265746_10178691 | 3300030815 | Soil | MPKSVSDHLDNDPDRGKGSLEPDGRAQEGNNSMSD |
| Ga0302297_10453891 | 3300031244 | Fen | MPTHAADHLKNDSDRGKGSLEPDDRAQPGNNSMKGQLSHRD |
| Ga0310686_1091727941 | 3300031708 | Soil | MQKNVSDPLKNDPDRGKGSQEPDDRKQAGNNSMKDQLGHRNPDPMQDGADSD |
| Ga0307474_110478402 | 3300031718 | Hardwood Forest Soil | MTRSVSDHLKNDDDRGKGSMEPDERGQSANSSMNGQLGHRNPHPMQDGADSDFPE |
| Ga0311367_103111771 | 3300031918 | Fen | MSGHAADHLKNDSDRGKGSLEPDEREQAGNNSMKGQLSHRNVHPM |
| Ga0335081_116539212 | 3300032892 | Soil | MPKSSSDHLRNDADRGKGSLEPDERSQAGNNSMRGQ |
| Ga0335069_115957951 | 3300032893 | Soil | MPATASDHLRNDADRGKGSMEPDERNQLGNNSMKGQLSHRDKTPLV |
| Ga0335084_119059612 | 3300033004 | Soil | MPNRAADHLLNDSDRGKGSLEPDDRTQAGNNSMKGQLPHRNQHPMIQGAD |
| Ga0371487_0171594_926_1060 | 3300033982 | Peat Soil | MPKSASDHLHNDADRGKGSQEPDERTQSGNNSMKDQLSHRNPDPL |
| Ga0326724_0026785_4659_4772 | 3300034091 | Peat Soil | MPKSVSDHLHNDADRGKGSLEPDERNQTGNNSMRDQLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |