Metagenome / Metatranscriptome Family F078960

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078960
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	58 residues
Representative Sequence	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKHS
Number of Associated Samples	69
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.45 %
% of genes near scaffold ends (potentially truncated)	17.24 %
% of genes from short scaffolds (< 2000 bps)	76.72 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.621 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.690 % of family members)
Environment Ontology (ENVO)	Unclassified (43.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (85.345 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.53% β-sheet: 0.00% Coil/Unstructured: 57.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00521	DNA_topoisoIV	6.90
PF07730	HisKA_3	6.90
PF11645	PDDEXK_5	5.17
PF00171	Aldedh	5.17
PF02737	3HCDH_N	2.59
PF00196	GerE	1.72
PF00691	OmpA	1.72
PF00072	Response_reg	0.86
PF00989	PAS	0.86
PF08281	Sigma70_r4_2	0.86
PF02663	FmdE	0.86
PF06742	DUF1214	0.86
PF00383	dCMP_cyt_deam_1	0.86
PF04542	Sigma70_r2	0.86
PF13620	CarboxypepD_reg	0.86
PF03544	TonB_C	0.86
PF02371	Transposase_20	0.86
PF08327	AHSA1	0.86
PF12779	WXXGXW	0.86
PF00725	3HCDH	0.86
PF00067	p450	0.86
PF13560	HTH_31	0.86
PF13442	Cytochrome_CBB3	0.86
PF00882	Zn_dep_PLPC	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	6.90
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	6.90
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	6.90
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	6.90
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	6.90
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	5.17
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	5.17
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	5.17
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	3.45
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.59
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	2.59
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.59
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	2.59
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	2.59
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	2.59
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.86
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.86
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.86
COG2124	Cytochrome P450	Defense mechanisms [V]	0.86
COG2191	Formylmethanofuran dehydrogenase subunit E	Energy production and conversion [C]	0.86
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.86
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.86
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.86
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
All Organisms	root	All Organisms	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
cellular organisms	root	All Organisms → cellular organisms	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.86 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.62 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.86 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10377426	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300001661\|JGI12053J15887_10441392	Not Available	623	Open in IMG/M
3300002245\|JGIcombinedJ26739_101241687	Not Available	635	Open in IMG/M
3300003505\|JGIcombinedJ51221_10007239	All Organisms → cellular organisms → Bacteria → Acidobacteria	3462	Open in IMG/M
3300003505\|JGIcombinedJ51221_10009113	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3177	Open in IMG/M
3300004103\|Ga0058903_1493500	Not Available	627	Open in IMG/M
3300004631\|Ga0058899_12061193	Not Available	657	Open in IMG/M
3300005533\|Ga0070734_10843003	Not Available	520	Open in IMG/M
3300005534\|Ga0070735_10124085	Not Available	1612	Open in IMG/M
3300005534\|Ga0070735_10198228	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300005538\|Ga0070731_10090961	All Organisms → cellular organisms → Bacteria	2022	Open in IMG/M
3300005541\|Ga0070733_10540213	Not Available	780	Open in IMG/M
3300005541\|Ga0070733_10877429	Not Available	602	Open in IMG/M
3300005542\|Ga0070732_10123368	Not Available	1535	Open in IMG/M
3300005542\|Ga0070732_10977153	Not Available	518	Open in IMG/M
3300005602\|Ga0070762_10002293	All Organisms → cellular organisms → Bacteria	8996	Open in IMG/M
3300005602\|Ga0070762_10008753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5020	Open in IMG/M
3300005610\|Ga0070763_10482046	Not Available	707	Open in IMG/M
3300005921\|Ga0070766_11024831	Not Available	568	Open in IMG/M
3300006176\|Ga0070765_100774514	Not Available	907	Open in IMG/M
3300006176\|Ga0070765_101113946	Not Available	746	Open in IMG/M
3300006176\|Ga0070765_102112729	Not Available	526	Open in IMG/M
3300011120\|Ga0150983_10128682	Not Available	835	Open in IMG/M
3300011120\|Ga0150983_10183727	Not Available	878	Open in IMG/M
3300011120\|Ga0150983_11122756	Not Available	529	Open in IMG/M
3300011120\|Ga0150983_12987219	Not Available	899	Open in IMG/M
3300020579\|Ga0210407_10636502	Not Available	830	Open in IMG/M
3300020580\|Ga0210403_10649043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300020580\|Ga0210403_10708545	Not Available	806	Open in IMG/M
3300020580\|Ga0210403_11465505	Not Available	515	Open in IMG/M
3300020581\|Ga0210399_11090576	Not Available	639	Open in IMG/M
3300020582\|Ga0210395_10151140	Not Available	1733	Open in IMG/M
3300020582\|Ga0210395_10161457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1675	Open in IMG/M
3300020582\|Ga0210395_10516778	Not Available	898	Open in IMG/M
3300020582\|Ga0210395_10543148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300020583\|Ga0210401_10022128	All Organisms → cellular organisms → Bacteria	6089	Open in IMG/M
3300020583\|Ga0210401_10283131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1518	Open in IMG/M
3300021168\|Ga0210406_10008727	All Organisms → cellular organisms → Bacteria → Acidobacteria	10130	Open in IMG/M
3300021168\|Ga0210406_10096453	All Organisms → cellular organisms → Bacteria	2515	Open in IMG/M
3300021168\|Ga0210406_10390504	Not Available	1117	Open in IMG/M
3300021170\|Ga0210400_10013269	All Organisms → cellular organisms → Bacteria	6564	Open in IMG/M
3300021170\|Ga0210400_10022459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4914	Open in IMG/M
3300021170\|Ga0210400_10147409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1895	Open in IMG/M
3300021171\|Ga0210405_10013082	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6915	Open in IMG/M
3300021171\|Ga0210405_10164923	All Organisms → cellular organisms → Bacteria	1755	Open in IMG/M
3300021171\|Ga0210405_10209045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1547	Open in IMG/M
3300021171\|Ga0210405_10218934	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300021171\|Ga0210405_10251981	Not Available	1397	Open in IMG/M
3300021171\|Ga0210405_10533326	Not Available	918	Open in IMG/M
3300021178\|Ga0210408_10394044	Not Available	1103	Open in IMG/M
3300021180\|Ga0210396_10007702	All Organisms → cellular organisms → Bacteria	10241	Open in IMG/M
3300021180\|Ga0210396_10028018	All Organisms → cellular organisms → Bacteria	5210	Open in IMG/M
3300021180\|Ga0210396_10066667	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	3280	Open in IMG/M
3300021181\|Ga0210388_10084589	All Organisms → cellular organisms → Bacteria → Acidobacteria	2697	Open in IMG/M
3300021401\|Ga0210393_10132045	All Organisms → cellular organisms → Bacteria → Acidobacteria	2001	Open in IMG/M
3300021405\|Ga0210387_11406599	Not Available	600	Open in IMG/M
3300021406\|Ga0210386_10933225	Not Available	742	Open in IMG/M
3300021407\|Ga0210383_10458925	All Organisms → cellular organisms → Bacteria → Acidobacteria	1100	Open in IMG/M
3300021420\|Ga0210394_10064435	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300021420\|Ga0210394_10225523	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300021432\|Ga0210384_10087243	All Organisms → cellular organisms → Bacteria	2804	Open in IMG/M
3300021474\|Ga0210390_10181085	Not Available	1780	Open in IMG/M
3300021477\|Ga0210398_10226685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1523	Open in IMG/M
3300021479\|Ga0210410_10000744	All Organisms → cellular organisms → Bacteria	33531	Open in IMG/M
3300021559\|Ga0210409_10164499	All Organisms → cellular organisms → Bacteria	2029	Open in IMG/M
3300022528\|Ga0242669_1008546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1266	Open in IMG/M
3300022528\|Ga0242669_1056413	Not Available	683	Open in IMG/M
3300022529\|Ga0242668_1132467	Not Available	535	Open in IMG/M
3300022529\|Ga0242668_1138148	Not Available	527	Open in IMG/M
3300022715\|Ga0242678_1088417	Not Available	502	Open in IMG/M
3300022716\|Ga0242673_1034843	Not Available	790	Open in IMG/M
3300022717\|Ga0242661_1046918	Not Available	796	Open in IMG/M
3300022726\|Ga0242654_10201403	Not Available	692	Open in IMG/M
3300022726\|Ga0242654_10399329	Not Available	527	Open in IMG/M
3300023030\|Ga0224561_1028295	Not Available	506	Open in IMG/M
3300024225\|Ga0224572_1046181	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300026557\|Ga0179587_10528546	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300027073\|Ga0208366_1017578	Not Available	778	Open in IMG/M
3300027684\|Ga0209626_1197954	Not Available	533	Open in IMG/M
3300027842\|Ga0209580_10378862	Not Available	705	Open in IMG/M
3300027855\|Ga0209693_10058870	Not Available	1891	Open in IMG/M
3300027867\|Ga0209167_10263058	Not Available	928	Open in IMG/M
3300027884\|Ga0209275_10007031	All Organisms → cellular organisms → Bacteria	4729	Open in IMG/M
3300027889\|Ga0209380_10060861	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300027908\|Ga0209006_10020946	All Organisms → cellular organisms → Bacteria	5926	Open in IMG/M
3300027986\|Ga0209168_10161134	Not Available	1134	Open in IMG/M
3300027986\|Ga0209168_10542897	Not Available	559	Open in IMG/M
3300028906\|Ga0308309_10883297	Not Available	776	Open in IMG/M
3300029636\|Ga0222749_10244228	Not Available	912	Open in IMG/M
3300029636\|Ga0222749_10436217	Not Available	699	Open in IMG/M
3300029636\|Ga0222749_10655882	Not Available	574	Open in IMG/M
3300030730\|Ga0307482_1036307	Not Available	1131	Open in IMG/M
3300030730\|Ga0307482_1274728	Not Available	535	Open in IMG/M
3300030879\|Ga0265765_1026015	Not Available	727	Open in IMG/M
3300030937\|Ga0138302_1230907	Not Available	574	Open in IMG/M
3300030991\|Ga0073994_10064049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300031057\|Ga0170834_107667723	Not Available	1029	Open in IMG/M
3300031708\|Ga0310686_100135201	All Organisms → cellular organisms → Bacteria → Acidobacteria	6025	Open in IMG/M
3300031708\|Ga0310686_102705997	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300031708\|Ga0310686_111659282	Not Available	501	Open in IMG/M
3300031708\|Ga0310686_115761521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2039	Open in IMG/M
3300031708\|Ga0310686_116828630	Not Available	1098	Open in IMG/M
3300031708\|Ga0310686_119029081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1696	Open in IMG/M
3300031715\|Ga0307476_10020548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4282	Open in IMG/M
3300031715\|Ga0307476_10359678	Not Available	1072	Open in IMG/M
3300031718\|Ga0307474_10641463	Not Available	838	Open in IMG/M
3300031754\|Ga0307475_10417673	Not Available	1078	Open in IMG/M
3300031823\|Ga0307478_10155901	Not Available	1815	Open in IMG/M
3300031823\|Ga0307478_10288338	Not Available	1342	Open in IMG/M
3300031823\|Ga0307478_10558529	All Organisms → cellular organisms → Bacteria → Acidobacteria	956	Open in IMG/M
3300031823\|Ga0307478_11667985	Not Available	526	Open in IMG/M
3300031962\|Ga0307479_10171946	All Organisms → cellular organisms → Bacteria	2129	Open in IMG/M
3300031962\|Ga0307479_10817864	Not Available	907	Open in IMG/M
3300032515\|Ga0348332_11440896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300032515\|Ga0348332_12977089	Not Available	636	Open in IMG/M
3300032515\|Ga0348332_13944430	Not Available	836	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.14%
Host-Associated	Host-Associated	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.14%
Plants	Host-Associated → Plants	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.55%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	56.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.10%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.07%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	10.34%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.34%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103774261	3300001593	Forest Soil	LAAQEKDPAKLMTLSGEITRLLESKEQRVKKVPGSMGEDPTKKAG*
JGI12053J15887_104413922	3300001661	Forest Soil	MIWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLESKQQYVRKAPSSVPENPGKAS*
JGIcombinedJ26739_1012416871	3300002245	Forest Soil	MIWDKKESWMELCELAAHEKDPAKLMVLIGEITRLLESKEQRVKKVPGSIGEDPT
JGIcombinedJ51221_100072392	3300003505	Forest Soil	MVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETKQQRVTRAPAENPAKNPR*
JGIcombinedJ51221_100091132	3300003505	Forest Soil	MVWDKKESWMELCELAAQETDPKKLMALIAEIDRLLEAKHQCVAAPGSVTENPAKTAS*
Ga0058903_14935001	3300004103	Forest Soil	MVWDRKESWVELCELAAQEKDPAKLMVLIGEIDRLLESKEQRVIKAPSSTSESLSERASSER*
Ga0058899_120611931	3300004631	Forest Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVIKAPSSTTENPIEKLS*
Ga0070734_108430031	3300005533	Surface Soil	VFQHLWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGENPTTKAS*
Ga0070735_101240852	3300005534	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKAPSSTTENPTK*
Ga0070735_101982281	3300005534	Surface Soil	KSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGENPTTKAS*
Ga0070731_100909611	3300005538	Surface Soil	MIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGENPTTKAS*
Ga0070733_105402131	3300005541	Surface Soil	PEEVMIWDKKESWMELCELAAQEKDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS*
Ga0070733_108774291	3300005541	Surface Soil	VFQHLWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPCSTGENPTTKAS*
Ga0070732_101233683	3300005542	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKALSSTTENPTK*
Ga0070732_109771532	3300005542	Surface Soil	MVWDKKESWMELCELAAQEKDPKKLIALIGEIDRLLEAKQKQVPKAPENPAKKAS*
Ga0070762_100022935	3300005602	Soil	MVWDKKESWMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKARLT*
Ga0070762_100087534	3300005602	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPNSSTENSVEKLS*
Ga0070763_104820462	3300005610	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPENPAKNPR*
Ga0070766_110248312	3300005921	Soil	MELCELASQEKDPAKLMTLIGEITRLLESKEQSVKKVPGSMGENPTKKAS*
Ga0070765_1007745141	3300006176	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPAENPAKNPR*
Ga0070765_1011139461	3300006176	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIAEIERLLETKQQRVTRAPAENPAKNPR*
Ga0070765_1021127291	3300006176	Soil	MVWDKNESWMELCELAAQEKDPKKLIALIGKIDRLLESKEQRVAKAPNSVTENPAKKAS*
Ga0150983_101286821	3300011120	Forest Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQCMANAPGSVAENPDTKGS*
Ga0150983_101837272	3300011120	Forest Soil	MVWDRKESWVELCELAVQEKDPTKLMALIGEIDRLLESKAQRVIKAPSSTSENLSEKTS*
Ga0150983_111227562	3300011120	Forest Soil	MELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVIKTPSSTAETPSEQAS*
Ga0150983_129872192	3300011120	Forest Soil	MVWDRKESWVELCELAAQEKDPAKLMVLIGDIDRLLESKEQRVIKAPSSTSESLSERASSER*
Ga0210407_106365021	3300020579	Soil	MVWDNNNKDKESWTELCDLAAQEKDPTKLMALIGEIDRLLEAKQQRVTKAPDMVPENPADKAS
Ga0210403_106490432	3300020580	Soil	MAWDKKESWMELCELAAQEEDPTKLMALIGEIDRLLQSKEQRVSKAPSSTTENSIEKLS
Ga0210403_107085451	3300020580	Soil	MSWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPPSSTTENPIEKLS
Ga0210403_114655051	3300020580	Soil	MVWDKDESWMELCELAAQEKDPKKLIALIGEIDRLLESKEQRVTKAPNSVTENPAKK
Ga0210399_110905761	3300020581	Soil	MIWDRKESWIELYELAAQEKDPTKLLALIGEIDRLLESREQRVAKAPSSVAESPTKKAS
Ga0210395_101511402	3300020582	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETEQQRVTRAPAENPAKNPR
Ga0210395_101614572	3300020582	Soil	MVWDKKESWMELCELAAQETDPKKLMALIAEIDRLLEAKHQCVAAPGSVTENPAKTAS
Ga0210395_105167782	3300020582	Soil	MVWDKKESWLELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVEKAPRVGDRESC
Ga0210395_105431481	3300020582	Soil	MAWDRKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0210401_100221282	3300020583	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETKQQRVTRAPAENPAKNPR
Ga0210401_102831312	3300020583	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPNSSTENSVEKLS
Ga0210406_100087276	3300021168	Soil	MIWEKRESWMELCELAAQEKDPKRLMALIAEIDRLLEAKHQQVPKAPDPVTENPAKKGS
Ga0210406_100964533	3300021168	Soil	MVWNNNESWIELCQLAAQEKDPTKLIALLGEIGRLLESGEHRVATTPISVGVKKAS
Ga0210406_103905042	3300021168	Soil	KKENWIELCELAVQEKDPAKLMALIREIDQLLESKAQPVGNAPGSAARKRTG
Ga0210400_100132694	3300021170	Soil	MIWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLESKQQYVRKAPSSVPENPGKAS
Ga0210400_100224594	3300021170	Soil	MVWDKRESWMELCELAAQEKDPTKLIALIAEIDRLLESKEQSVRKTPSSVPANPSTEAN
Ga0210400_101474092	3300021170	Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQYMAKAPGSVAENPDTKGS
Ga0210405_100130826	3300021171	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIAEIERLLETKQQRVTKAPDLVAENPAKNPR
Ga0210405_101649232	3300021171	Soil	MELCELASQEKDPAKLMTLIGEITRLLESKEQSVKKVPGSMGENPTKKAS
Ga0210405_102090454	3300021171	Soil	MVGDKKESWVELCELPAQEKGPTRLTELIAELDRLLEAKHQCVAKVPDSVTEHPAC
Ga0210405_102189342	3300021171	Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLETNQQCVAKAPGSVAENPTTKGS
Ga0210405_102519811	3300021171	Soil	MSWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAP
Ga0210405_105333261	3300021171	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0210408_103940442	3300021178	Soil	MVGDKKESWVELCELPAQEKDPTRLTELIAELDRLLEAKHQCVAKVPDSVTEHPAC
Ga0210396_100077023	3300021180	Soil	MVWDKKESWMELCELAAQEEDTTKLMALIGEIDRLLETKEQAVRKPANSVFENPAEKAG
Ga0210396_100280184	3300021180	Soil	MIWDKKESWMELCELAAQEQDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210396_100666675	3300021180	Soil	MIWDKKESWMELCELAAQEEDSTKLMALIAELERLLESKEQAVRKPPISALEHPADKAS
Ga0210388_100845893	3300021181	Soil	MVWDKKESWMELCELAAQEKDSKKLMALIGEIDRTLGSKASVCGEGFRVGNRESC
Ga0210393_101320452	3300021401	Soil	MVWDKKESWMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKARL
Ga0210387_114065991	3300021405	Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQCMAKAPGSVAENSTAKGS
Ga0210386_109332252	3300021406	Soil	VFQHMWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210383_104589252	3300021407	Soil	MVWDKKESWMELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVEKAPRVGDRESC
Ga0210394_100644353	3300021420	Soil	MVWDKKESWMEPCELAAQEKDPRKLMALIREINRLLEAKHQCLAKASESATADPDKKGRL
Ga0210394_102255232	3300021420	Soil	MWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210384_100872435	3300021432	Soil	MVWDNEESWMELCELAAQEKDPAKLMTLIGEIERLLESKEQRVTKAQSSAGRESY
Ga0210390_101810851	3300021474	Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVIKAPSSTTENPIEKLS
Ga0210398_102266852	3300021477	Soil	MWYKSFLDPEEVMIWDKKESWMELCELAAQEQDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0210410_1000074428	3300021479	Soil	MIWDTKESWMELCEFATEEQDPAKLMALIAEIDRLLGAKQQRVPRAPDLLAENPAKNAR
Ga0210409_101644995	3300021559	Soil	IRHSPIPEEIFMAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0242669_10085461	3300022528	Soil	MELCELAAQEEDTTKLMALIGEIDRLLETKEQAVRKPANSVFENPAEKAG
Ga0242669_10564131	3300022528	Soil	AMVWDNKETWMELCELAAQEKDPVKLMALIREIDRLLETEQQRVTRAPAENPAKNPR
Ga0242668_11324671	3300022529	Soil	LSGTKKESWMELCELAAQEQDAAKLMTLIGEITRLLEAKEQSVKKVPRSTEENPTPKAS
Ga0242668_11381482	3300022529	Soil	MSWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVSKAPSSSTENLIEKLS
Ga0242678_10884171	3300022715	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIAQIDRLLETKQQRVTRAPVENPAQNTR
Ga0242673_10348432	3300022716	Soil	WMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKAKADIG
Ga0242661_10469182	3300022717	Soil	MSWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPPSSTTEN
Ga0242654_102014032	3300022726	Soil	MVWDKKENWIELCELAVQEKDPAKLMALIREIDQLLESKAQPVGNAPGSAARKRTG
Ga0242654_103993291	3300022726	Soil	RRVVMIWEKRESWMELCELAAQEKDPKRLMALIAEIDRLLEAKHQQVPKAPDPVTENPAKKGS
Ga0224561_10282951	3300023030	Soil	MVWDNKESWMELCELAAQEKDPSKLMALIGEIDRLLESKEQSVRKPSS
Ga0224572_10461812	3300024225	Rhizosphere	MVWDNKESWMELCELAAQEKDPRKLMALLGEIDRLLEAKHQCVAKAPESVTANPAKKAD
Ga0179587_105285462	3300026557	Vadose Zone Soil	MVWDKRESWMELCELAAQEKDPRKLIALIGEIDRLLEAKHQCVAKVPESVTANPAKKAG
Ga0208366_10175781	3300027073	Forest Soil	MIWDKKESWMELCELAAQEKDPAKLMTLIGEITRLLESKEQSVKKVPGSMGENPTKKAS
Ga0209626_11979542	3300027684	Forest Soil	MVWDNKESWMELCELAAQEKDPTKLMALIGEIDRLLESKEQSVRKPPSSVAGNPIEKAR
Ga0209580_103788621	3300027842	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKALSSTTENPTK
Ga0209693_100588701	3300027855	Soil	MVWDNKETWMELCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPENPAKNPR
Ga0209167_102630581	3300027867	Surface Soil	VFQHMWYKSFLDPEEVMIWDKKESWMELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPCSTGENPTTKAS
Ga0209275_100070316	3300027884	Soil	MVWDKKESWMELCELAAQEKDPKKLMALFGEIDRLLEAKHQCVAKAPESVTANPATKAKADIG
Ga0209380_100608612	3300027889	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIGEIDRLLETKQQGVTRAPENPAKNPR
Ga0209006_100209464	3300027908	Forest Soil	MVWDNKETWMRLCELAAEEKDPNKLMALIGEIDRLLEANQQCMAKAPGSVAENPDTKGS
Ga0209168_101611341	3300027986	Surface Soil	MVRDKKESWVELCELAAQEQDPTKLMVLIGEIDRLLQSKEQRVIKAPSSTTENPTK
Ga0209168_105428972	3300027986	Surface Soil	MELCELAAQEKDAAKLMALIGEITRLLEAKEQSVKKVPRSTGETPTTKAS
Ga0308309_108832971	3300028906	Soil	MVWDNKESWMQLCELAAQEKDPVKLMALIAEIERLLETKQQRVTRAPAENPAKNPR
Ga0222749_102442283	3300029636	Soil	MVWDNKETWMELCELAAQEKKQVKLMALIGEIDRLLETKQQGVTRAP
Ga0222749_104362172	3300029636	Soil	MVWHNKETWMELCELAAQEKDPVKLMALIADIDRLLETKQQRVTRAPAENPAKNPR
Ga0222749_106558822	3300029636	Soil	WDKKESWLELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVEKAPRVGDRESC
Ga0307482_10363071	3300030730	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKTPSSTTENPIEKLS
Ga0307482_12747281	3300030730	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLESKDQRVTKAPSLTAENPIEKAS
Ga0265765_10260152	3300030879	Soil	MVWDKKESWMELCELAAQEKDPKKLMALIGEIDRLLEAKHQCVAKASESVTANPAKKAD
Ga0138302_12309071	3300030937	Soil	MVRDKKESWTELCELAAQEQDPTKLMALIGEIDRLLQSKEQRVAKAPSSTTENPTK
Ga0073994_100640492	3300030991	Soil	MVWDRKESWVELCELAAQEKDPTKLMVLIGEIDRLLESKQQYVRKAPSSVPENPGKAS
Ga0170834_1076677231	3300031057	Forest Soil	MVWDKKESWMELCELAAQETDPKKLMALIAEIDRLWEAKHPCVAAPASVTENPAKTAS
Ga0310686_1001352013	3300031708	Soil	MAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKHS
Ga0310686_1027059973	3300031708	Soil	MVWDKKESWMELCELAAQEKDPRKLMALIGEIDRLLEAKHQCVAKAPESVTANPAKKAD
Ga0310686_1116592821	3300031708	Soil	MVWDNKETWMQLCELAAQEKDPNKLMALIGEIERLLESKEQRVAKASDLVAENPTEKVR
Ga0310686_1157615214	3300031708	Soil	MELCELAAQEKDPKKLIALIGEIDRLLEAKRQCVAKAPESVTANPAKQGHLT
Ga0310686_1168286301	3300031708	Soil	HGMCGQQGMILGSGLSPEGTVMVWDNKESWMELCELAAQEKDPSKLMALIGEIDRLLESKEQSVRKPSSPVAENPIEKAR
Ga0310686_1190290812	3300031708	Soil	MVWDDKDSWMELCELAVQEKDPAKLMALIGEIDRLLETKEQSARKSASSVAGNPIEKAR
Ga0307476_100205482	3300031715	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKLS
Ga0307476_103596781	3300031715	Hardwood Forest Soil	MVWDSKENWMELCRLAAQEKDPAKLMVLIGEIERLLELKEQRLEKVARLVDK
Ga0307474_106414632	3300031718	Hardwood Forest Soil	MVWDNKESWMELCELAAQEKDTTKLMALIGEIDRLLDAKQQRVTKAPDLVAENPADKAS
Ga0307475_104176732	3300031754	Hardwood Forest Soil	LEVVLEPGGTTMVWDNKESWMELCELAAQEKDPVKMMALIGEIDRLLETKQQRVPKAPDSVTENPAEKRS
Ga0307478_101559012	3300031823	Hardwood Forest Soil	MAWDKKESWMELCELAAQEKDPSKLMALIGEIDRLLQSKEQRVTKAPSSTTENSIEKLS
Ga0307478_102883381	3300031823	Hardwood Forest Soil	MVWDKNESWMELCELAAQKKDPKKLIALIGEIDRLLESKEQRVTKAPNSVTENPAKKAS
Ga0307478_105585291	3300031823	Hardwood Forest Soil	VFLSPEGGWSGTKKKAWMELCELAAQEKRPHKADGLIGEIDRLLESKEQRVTKVPDSVIGNPTRKAS
Ga0307478_116679852	3300031823	Hardwood Forest Soil	MVWNNKEGWMELCELATQEKDPTKLMALIGEIDRLLEAKQQRVTKAPDLVAENPADKAG
Ga0307479_101719463	3300031962	Hardwood Forest Soil	MVWDRKESWVELCELAVQEKDPTKLMALIGEIDRLLESKAQRVIKAPSSTSENLSEKTS
Ga0307479_108178643	3300031962	Hardwood Forest Soil	MVWDKDESWMELCELAAQEKDPKKLIALIGEIDRLLESKEQRVTKAPNSVTENPAKKAS
Ga0348332_114408962	3300032515	Plant Litter	GDIMAWDKKESWMELCELAAQEKDPTKLMALIGEIDRLLQSKEQRVTKAPSSTTENPIEKHS
Ga0348332_129770891	3300032515	Plant Litter	RRAVMVWDNKESWMELCELAAQEKDPRKLMALLGEIDRLLEAKHQCVAKAPESVTANPAKKAD
Ga0348332_139444301	3300032515	Plant Litter	MCGQQGMILGSGLSPEGTVMVWDNKESWMELCELAAQEKDPSKLMALIGEIDRLLESKEQSVRKPSSPVAENPIEKAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078960

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences