Metagenome / Metatranscriptome Family F078982

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078982
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	52 residues
Representative Sequence	GATDTQKASQQLVETSTQLRRLVEQFKINAGENGAAAIPAQSRAAHAGS
Number of Associated Samples	98
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.41 %
% of genes from short scaffolds (< 2000 bps)	85.34 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.655 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (16.379 % of family members)
Environment Ontology (ENVO)	Unclassified (46.552 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.966 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.16% β-sheet: 0.00% Coil/Unstructured: 55.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01339	CheB_methylest	20.69
PF00072	Response_reg	17.24
PF11845	DUF3365	12.93
PF00672	HAMP	7.76
PF12729	4HB_MCP_1	3.45
PF08668	HDOD	3.45
PF03705	CheR_N	3.45
PF08269	dCache_2	0.86
PF07690	MFS_1	0.86
PF02641	DUF190	0.86
PF00271	Helicase_C	0.86
PF14310	Fn3-like	0.86
PF11755	DUF3311	0.86
PF17200	sCache_2	0.86
PF01914	MarC	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	41.38
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	6.90
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.86
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.66 %
Unclassified	root	N/A	35.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.03 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	14.66 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.17 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	14.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.45 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.86 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2.59 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	11.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	2.59 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	2.59 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.86 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	11.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	2.59 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	2.59 %
Pirellula	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula	0.86 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.34 %
Occallatibacter savannae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	11.21 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.17 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	2.59 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	2.59 %
Pirellula staleyi	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	0.86 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10046622	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Pirellula → Pirellula staleyi	2362	Open in IMG/M
3300002245\|JGIcombinedJ26739_100435902	Not Available	1188	Open in IMG/M
3300004082\|Ga0062384_100096193	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300005167\|Ga0066672_10792265	Not Available	597	Open in IMG/M
3300005176\|Ga0066679_10276900	Not Available	1087	Open in IMG/M
3300005518\|Ga0070699_101313714	Not Available	663	Open in IMG/M
3300005536\|Ga0070697_100220524	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300005541\|Ga0070733_10273208	Not Available	1114	Open in IMG/M
3300005591\|Ga0070761_10469928	Not Available	773	Open in IMG/M
3300005591\|Ga0070761_10526558	Not Available	731	Open in IMG/M
3300005921\|Ga0070766_10995861	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300006028\|Ga0070717_10364477	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300006055\|Ga0097691_1091328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	914	Open in IMG/M
3300006102\|Ga0075015_100886731	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300006176\|Ga0070765_100996868	Not Available	792	Open in IMG/M
3300006354\|Ga0075021_10280057	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300009029\|Ga0066793_10018544	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	3768	Open in IMG/M
3300009521\|Ga0116222_1172613	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	930	Open in IMG/M
3300009521\|Ga0116222_1244528	Not Available	774	Open in IMG/M
3300009525\|Ga0116220_10195095	Not Available	876	Open in IMG/M
3300009623\|Ga0116133_1127976	Not Available	657	Open in IMG/M
3300009629\|Ga0116119_1045637	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300009634\|Ga0116124_1044998	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300009638\|Ga0116113_1029362	Not Available	1234	Open in IMG/M
3300009643\|Ga0116110_1050904	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300009672\|Ga0116215_1160754	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300009700\|Ga0116217_10843005	Not Available	563	Open in IMG/M
3300009764\|Ga0116134_1043850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1730	Open in IMG/M
3300012096\|Ga0137389_10216417	All Organisms → cellular organisms → Bacteria → Acidobacteria	1600	Open in IMG/M
3300012683\|Ga0137398_10083111	All Organisms → cellular organisms → Bacteria	1980	Open in IMG/M
3300012923\|Ga0137359_11633110	Not Available	532	Open in IMG/M
3300012975\|Ga0134110_10566881	Not Available	524	Open in IMG/M
3300014151\|Ga0181539_1364898	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300014158\|Ga0181521_10299156	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300014159\|Ga0181530_10112242	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1611	Open in IMG/M
3300014162\|Ga0181538_10168804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1245	Open in IMG/M
3300014165\|Ga0181523_10114928	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300014165\|Ga0181523_10218566	Not Available	1097	Open in IMG/M
3300014169\|Ga0181531_10052112	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300014491\|Ga0182014_10185128	Not Available	1139	Open in IMG/M
3300014492\|Ga0182013_10247194	Not Available	1035	Open in IMG/M
3300014494\|Ga0182017_10188235	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1323	Open in IMG/M
3300014498\|Ga0182019_10125303	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1602	Open in IMG/M
3300014498\|Ga0182019_10230674	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1210	Open in IMG/M
3300014502\|Ga0182021_10368241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1701	Open in IMG/M
3300014839\|Ga0182027_11018780	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300017948\|Ga0187847_10000759	All Organisms → cellular organisms → Bacteria	32968	Open in IMG/M
3300017955\|Ga0187817_10569896	Not Available	722	Open in IMG/M
3300017995\|Ga0187816_10151298	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300018002\|Ga0187868_1159492	Not Available	812	Open in IMG/M
3300018005\|Ga0187878_1139184	Not Available	951	Open in IMG/M
3300018009\|Ga0187884_10325548	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300018015\|Ga0187866_1105592	Not Available	1156	Open in IMG/M
3300018016\|Ga0187880_1111097	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1336	Open in IMG/M
3300018016\|Ga0187880_1480260	Not Available	510	Open in IMG/M
3300018020\|Ga0187861_10425747	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300018025\|Ga0187885_10557481	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300018026\|Ga0187857_10309788	Not Available	720	Open in IMG/M
3300018037\|Ga0187883_10104101	All Organisms → cellular organisms → Bacteria → Acidobacteria	1473	Open in IMG/M
3300018037\|Ga0187883_10157929	All Organisms → cellular organisms → Bacteria → Acidobacteria	1166	Open in IMG/M
3300018040\|Ga0187862_10482234	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	748	Open in IMG/M
3300018043\|Ga0187887_10222766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1120	Open in IMG/M
3300018043\|Ga0187887_10315153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	924	Open in IMG/M
3300018044\|Ga0187890_10811692	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300018047\|Ga0187859_10278044	Not Available	903	Open in IMG/M
3300018047\|Ga0187859_10848832	Not Available	526	Open in IMG/M
3300018057\|Ga0187858_10234135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1185	Open in IMG/M
3300018086\|Ga0187769_10284045	Not Available	1235	Open in IMG/M
3300019785\|Ga0182022_1016181	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1292	Open in IMG/M
3300020583\|Ga0210401_10692725	Not Available	879	Open in IMG/M
3300021402\|Ga0210385_10249296	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1304	Open in IMG/M
3300021405\|Ga0210387_10085426	All Organisms → cellular organisms → Bacteria → Acidobacteria	2613	Open in IMG/M
3300021407\|Ga0210383_10771438	Not Available	824	Open in IMG/M
3300021432\|Ga0210384_10015721	All Organisms → cellular organisms → Bacteria → Acidobacteria	7451	Open in IMG/M
3300021433\|Ga0210391_10008712	All Organisms → cellular organisms → Bacteria	8226	Open in IMG/M
3300021433\|Ga0210391_10239030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1426	Open in IMG/M
3300021474\|Ga0210390_10011440	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7242	Open in IMG/M
3300021474\|Ga0210390_10313302	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	1329	Open in IMG/M
3300021476\|Ga0187846_10198912	Not Available	840	Open in IMG/M
3300021479\|Ga0210410_11300778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300023090\|Ga0224558_1077016	Not Available	1236	Open in IMG/M
3300023090\|Ga0224558_1163811	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300025412\|Ga0208194_1048139	Not Available	660	Open in IMG/M
3300025419\|Ga0208036_1026610	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300025441\|Ga0208456_1046354	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	840	Open in IMG/M
3300025442\|Ga0208034_1010319	All Organisms → cellular organisms → Bacteria	3168	Open in IMG/M
3300025442\|Ga0208034_1046682	Not Available	923	Open in IMG/M
3300025448\|Ga0208037_1028149	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300025473\|Ga0208190_1007243	All Organisms → cellular organisms → Bacteria → Acidobacteria	2916	Open in IMG/M
3300026319\|Ga0209647_1053604	All Organisms → cellular organisms → Bacteria → Proteobacteria	2149	Open in IMG/M
3300027567\|Ga0209115_1009435	All Organisms → cellular organisms → Bacteria	2057	Open in IMG/M
3300027815\|Ga0209726_10074590	All Organisms → cellular organisms → Bacteria → Acidobacteria	2178	Open in IMG/M
3300027853\|Ga0209274_10277751	Not Available	859	Open in IMG/M
3300028866\|Ga0302278_10166766	Not Available	1130	Open in IMG/M
3300029889\|Ga0246001_1048518	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	935	Open in IMG/M
3300029992\|Ga0302276_10237064	Not Available	821	Open in IMG/M
3300030007\|Ga0311338_10490023	Not Available	1292	Open in IMG/M
3300030519\|Ga0302193_10256420	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	943	Open in IMG/M
3300030878\|Ga0265770_1084941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300031261\|Ga0302140_10215303	All Organisms → cellular organisms → Bacteria	1720	Open in IMG/M
3300031708\|Ga0310686_100331208	All Organisms → cellular organisms → Bacteria	16976	Open in IMG/M
3300031708\|Ga0310686_107808003	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300031708\|Ga0310686_109204061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300031708\|Ga0310686_119018103	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031715\|Ga0307476_10898978	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300031962\|Ga0307479_10245195	All Organisms → cellular organisms → Bacteria → Acidobacteria	1768	Open in IMG/M
3300031962\|Ga0307479_11201329	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300032160\|Ga0311301_10666982	All Organisms → cellular organisms → Bacteria	1474	Open in IMG/M
3300032160\|Ga0311301_11020623	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1090	Open in IMG/M
3300032805\|Ga0335078_10480801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1602	Open in IMG/M
3300033433\|Ga0326726_12339222	Not Available	519	Open in IMG/M
3300034124\|Ga0370483_0029211	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter savannae	1669	Open in IMG/M
3300034195\|Ga0370501_0140819	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.34%
Aquatic	Environmental → Aquatic	39.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.72%
Freshwater	Environmental → Aquatic → Freshwater	37.93%
Peat	Environmental → Terrestrial → Peat	7.76%
Sediment	Environmental → Aquatic → Sediment	1.72%
Cave	Environmental → Terrestrial → Cave	0.86%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	37.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.21%
Loam	Environmental → Terrestrial → Soil → Loam	9.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.72%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	24.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.07%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	11.21%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.72%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.86%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.86%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	16.38%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.90%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	5.17%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.31%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.72%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.86%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.86%
Peat	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009629	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009638	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025419	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025442	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100 (SPAdes)	Environmental	Open in IMG/M
3300025448	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100 (SPAdes)	Environmental	Open in IMG/M
3300025473	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300029889	Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm	Environmental	Open in IMG/M
3300029992	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100466223	3300000567	Peatlands Soil	DTQKASQQLVETSAELRRLVEQFRINAGGNGGKHGMASTGVRSMAAHA*
JGIcombinedJ26739_1004359022	3300002245	Forest Soil	TQKASQQLVETSTQLRRLVEQFKIDANGSGRDALQTQSRAAHAGG*
Ga0062384_1000961932	3300004082	Bog Forest Soil	TQKASQQLVETSAQLRRLVEQFKINEGSGHEGDAARIQTQSKTAHAGA*
Ga0066672_107922651	3300005167	Soil	VETSTQLRRLVEQFKINDDESGHGNSGDATAKGRSAHAGS*
Ga0066679_102769001	3300005176	Soil	TQKASQQLVETSTQLRRLVEQFKINAGENVRGNGGAAIPMQSRAAGAGS*
Ga0070699_1013137141	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	QQLVETSTELRRLVDQFKINAGGNGRGNGAEAAPAHSLAAHAGS*
Ga0070697_1002205241	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	QLVETSTELRRLVDQFKINAGGNGRGNGAEAAPAHSLAAHAGS*
Ga0070733_102732082	3300005541	Surface Soil	DTQKASQQLVETSTQLRRLVEQFKIESTANVPHRGAENKLRSWATHAGA*
Ga0070761_104699282	3300005591	Soil	TDTQKASQQLVETSTQLRRLVEQFKINANSNGNYSAGASSGPRAMATHAGA*
Ga0070761_105265581	3300005591	Soil	DTQKASQQLVETSAQLRRLVEQFKINAGSGHEEDAARIQTQSKATHAGA*
Ga0070766_109958612	3300005921	Soil	GATDTQNASRQLVETCTQLRRLVEQFKINAIEAGQGHGAMETQTQSRAARAGS*
Ga0070717_103644771	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TQKAAQQLVETSVELRRLVEQFKINVNENGHANTTGTAQSRSAHAGS*
Ga0097691_10913281	3300006055	Arctic Peat Soil	ASQQLVETSTQLRLLVEQFKINASENGGRNGVAATQAQSKAAHAGS*
Ga0075015_1008867312	3300006102	Watersheds	VAEAAQGTTRGATDTQKASQQLLETSTQLRRLVEQFKIGEEEKAGRNSAVSAPSRSMAAQAGK*
Ga0070765_1001086431	3300006176	Soil	TQKAAQQLVETSAELRRLVEQFKINAGDAAAAGVKGRSMAAQAGA*
Ga0070765_1009968681	3300006176	Soil	AESTSRGAADTQKEAQQLVEASAELRRLVEQFKIDANGSSGAPRTQSQSRAAYAGS*
Ga0075021_102800572	3300006354	Watersheds	QKAAHDLVQMSTQLRGLVEQFKISASQTSHGNGVTAIQAQSKAAHAGS*
Ga0066793_100185446	3300009029	Prmafrost Soil	RGATDTQKASQQLLETSTQLRRLVEQFKINASENGGRNGVAATHGQSKAAHAGS*
Ga0116222_11726131	3300009521	Peatlands Soil	GASDTQKASQQLVETSAELRRLVEQFRINAGGNGGKHGMASTGVRSMAAHA*
Ga0116222_12445282	3300009521	Peatlands Soil	ASQQLVETSTQLRRLVEQFKINAGENSRGNGAAATQEHLSSRSAHA*
Ga0116220_101950952	3300009525	Peatlands Soil	GTTRGATDTQKASQQLVETSTQLRRLVEQFKINTNGNGNSAGASSGPRAIATHAGA*
Ga0116133_11279761	3300009623	Peatland	TGVAEAAQGTTRGATDTQKASQQLVETANQLRRLVEQFKINTGSSGYGIGGGEPARTRAAHA*
Ga0116119_10456372	3300009629	Peatland	TTHGATETQKASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA*
Ga0116124_10449981	3300009634	Peatland	QGTTRGATDTQKASQQLVETSTQLRRLVEQFKINAGENGAAAIPAQSRAAHAGS*
Ga0116113_10293621	3300009638	Peatland	EAAQGTTRGASDTQKASQQLVETAAELRRLVEQFRVNKNEVGSGDRGAANPLRSRAAHA*
Ga0116110_10509041	3300009643	Peatland	GATDTQKASQQLVETSTQLRRLVEQFKINAGENGAAAIPAQSRAAHAGS*
Ga0116215_11607541	3300009672	Peatlands Soil	TETQKASQQLVETSVELRRLVEQFKINATENGRGSGASAGTAQSRAAHAGS*
Ga0116217_108430051	3300009700	Peatlands Soil	RGATDTQKASQQLVETATQLRRLVEQFKINAGDNSRGKGAATAPAQSRAAHAGS*
Ga0116134_10438501	3300009764	Peatland	TQKASQQLVETSIQLRRLVEQFKINASGNGVAATKAQAMAARAGS*
Ga0137389_102164171	3300012096	Vadose Zone Soil	THGATDTQKASQQLVETSNELRRLVEQFKVNASDNGHGNGASATHAQSKAAHAGS*
Ga0137398_100831111	3300012683	Vadose Zone Soil	AQAAESTSRGASDTQKAAQQLVETSAELRRMVEQFKIRPAGDSPVSSAPSTQAQSRAAYAGS*
Ga0137359_116331101	3300012923	Vadose Zone Soil	SRGATDTQRASQQLVETSTQLRRLVEQFKIKTNENGRGTGAAATPAQSKAAYAGS*
Ga0134110_105668812	3300012975	Grasslands Soil	GVAEAAQSTTRGATDTQKASEQLVETSTQLRRLVEQFKINGNESGHENIGDATAKGRSAHAGS*
Ga0181539_13648981	3300014151	Bog	TQKASQQLLETSAELRRLVEQFKINGGENGAATQAQSRAARAGA*
Ga0181521_102991561	3300014158	Bog	ETQKASQQLGETSTELRRLVEQFKINADANHAAATQARTKAAHASA*
Ga0181530_101122422	3300014159	Bog	QSTTHGATETQKASQQLLETSAELRRLVEQFKINAGENGRENRAASTQERSRAARAGA*
Ga0181538_101688041	3300014162	Bog	QKASQQLVETSTQLRRLVDQFKISAGENGRGNGAASQAHGRAAHAGS*
Ga0181532_102204601	3300014164	Bog	LVETSTQLRRLVEQFKINAGENSHGNGTAATHKQSRAAHAGS*
Ga0181523_101149281	3300014165	Bog	GVADAAQSTTRGATDTQKASQQLVETSAQLRRLVEQFKINAGNRREEHAATDQTRNKAAHAGA*
Ga0181523_102185662	3300014165	Bog	ATETQKASQQLVETSVELRRLVEQFKINAGDDGAATRMQSRAARAGA*
Ga0181531_100521121	3300014169	Bog	AQAAESTSRGATDTQKAAQQLVETSAELRRLVEQFRVNANGASGGSSAPHAAQSRAAYAGM*
Ga0182014_101851281	3300014491	Bog	ETQKASQQLLETAAELRRLVEQFRINAGESGAAASQPRSKAARAGS*
Ga0182013_102471941	3300014492	Bog	AGVAEAAQSTTRGASETQKASQQLVETSAELRRLVEQFKVNAGGNGAAGTHEQSRAARAGA*
Ga0182017_101882351	3300014494	Fen	QKASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA*
Ga0182019_101253031	3300014498	Fen	KASQQLLETSAELRRLVEQFKINAGENGGAASQARSRAAHAGM*
Ga0182019_102306742	3300014498	Fen	ASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA*
Ga0182021_103682412	3300014502	Fen	GATDTQKASQQLLETSTQLRRLIEQFKINGSENGVAATKAQTMAARAGS*
Ga0182027_110187801	3300014839	Fen	STTRGATETQKASQQLLETSAELRRLVEQFKINAGEDGAATRARSMAAHAGA*
Ga0187847_1000075926	3300017948	Peatland	TGVAEAAQGTTRGATDTQKASQQLVETANQLRRLVEQFKINTGSSGYGIGGGEPARTRAAHA
Ga0187817_105698962	3300017955	Freshwater Sediment	AESTSRGAGDTQKAAHDLVETATQLRRLVEQFKINANENAHGHGAAQSRVAHAGS
Ga0187816_101512982	3300017995	Freshwater Sediment	VAEAAQGTTRGATDTQKASQQLLETSAELRRLVEQFKISAGQNGAAASQARSRAAHAGR
Ga0187868_11594921	3300018002	Peatland	QGTTRGATDTQKASQQLLETSSQLRRLIEQFKTDATSGGEVPGGDKPARSKAAHAGS
Ga0187878_11391842	3300018005	Peatland	ETQKASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA
Ga0187884_103255481	3300018009	Peatland	TQKASQQLVETSAQLRRLVEQFKINANENAGGHGGAAIQTQGRAARAGA
Ga0187866_11055922	3300018015	Peatland	VAEAAQSTTHGATETQKASQQLLETSTELRRLVEQFKINAGENGAAASQARSRAARAGA
Ga0187880_11110971	3300018016	Peatland	QQLLETSAELRRLVEQFKINAGDNGRGKGAQSMAAHA
Ga0187880_14802602	3300018016	Peatland	EAAQGTTQGASDTQKASQHLVETSTELRRLVEQFKVNGGETGHGNVVQAHSKAARASA
Ga0187861_104257471	3300018020	Peatland	EAAQGTTRGATDTQKASQQLVETSTQLRRLVEQFKINASAKDRESAPTATSAQGRATHAG
Ga0187885_105574811	3300018025	Peatland	QKAAQQLVETSAELRRLVEQFKINAGNERPATTGSARTMSARAGA
Ga0187857_103097881	3300018026	Peatland	GATDTQKASQQLVQTSTQLRRLVEQFKISTSENGRPNDVAAPHEKSLASHAGM
Ga0187883_101041011	3300018037	Peatland	QGTTRGASDTQKASQQLVETAAELRRLVEQFKINASGAGSSATQARSRAARAGN
Ga0187883_101579291	3300018037	Peatland	TSRGASDTQKAAQQLVETSAELRRLVEQFKVNASENGRGNGAVVSQERSMRAHAGS
Ga0187862_104822341	3300018040	Peatland	ATETQKASQQLLETSAELRRLVEQFKVNAGESRGGNGVSSTGARSMAAHA
Ga0187887_102227661	3300018043	Peatland	QAAESTSQGAGDTQKALQQLVETSAQLRRLVEQFKIEQGAGANQGASAKPAPSKAARAGR
Ga0187887_103151531	3300018043	Peatland	AAESTSRGAGDSQKAAQDLVETSTQLRRLVEQFKIGSNENAHAGAANSRAAQAGS
Ga0187890_108116921	3300018044	Peatland	GATETQKASQQLVETSTELRRLVEQFKINADANHAAATQARTKAAHASA
Ga0187859_102780442	3300018047	Peatland	AEAAQGTTRGATDTQKASQQLVETANQLRRLVEQFKINTGSSGYGIGGGEPARTRAAHA
Ga0187859_108488321	3300018047	Peatland	TSRGATDTQKAAQQLVETSAELRRLVEQFRVNTNGASGGSSVPNAAQSRAAYAGM
Ga0187858_102341351	3300018057	Peatland	TDTQKASQQLVETSAQLRRLVEQFKINAGNRREEHAATDQTRNKAAHAGA
Ga0187769_102840452	3300018086	Tropical Peatland	VSDAAESTSHGAGDTQKAAQQLVATSAELRRLVEQFKVDGGRNGREMGAAATHGQSRAAHAGS
Ga0182022_10161812	3300019785	Fen	DTQKASQQLLETSTQLRRLIEQFKINGSENGVAATKAQTMAARAGS
Ga0210401_106927252	3300020583	Soil	GATDTQKASQQLVETSTQLRRLVEQFKVNANSNGNSAGASSGPRAIATHAGA
Ga0210388_103413951	3300021181	Soil	KAAQQLVVTSAELRRLVEQFKINTNTAAGSGQSARSMAARAGA
Ga0210385_102492961	3300021402	Soil	AQGTTRGATDTQKASQQLVETSTKLRRLVEQFRINAGDNVRGDEDLGAPTYSMAAHAGS
Ga0210387_100854261	3300021405	Soil	ESTSRGASDTQKAAQQLVETSAELRRLVEQFKINGGDNVSAGGEPRRATAARAGA
Ga0210383_107714381	3300021407	Soil	TRGAGDTQKASQQLVETSAQLRRLVEQFKITANTHPTAAGSQPEASMAAHAGY
Ga0210384_1001572111	3300021432	Soil	QLVETSAELRRLVEQFKINTNDNVPGIMAITRQSKAAHA
Ga0210391_1000871210	3300021433	Soil	GGVAEAAQGTTRGATDTQKASQQLVETSTKLRRLVEQFRINAGDNVRGDEDLGAPTYSMAAHAGS
Ga0210391_102390301	3300021433	Soil	DAAQSTTRGATDTQKASQQLVETSAQLRRLVEQFKLNPGNRHNEGAATDPTQKRAARAGA
Ga0210390_100114408	3300021474	Soil	TTHGATDTQKASQRLVETSAELRRLVEQFKINSDNGRRNGAAPGRSMAARAGA
Ga0210390_103133022	3300021474	Soil	QKASQQLVETSTKLRRLVEQFRINAGDNVRGDEDLGAPTYSMAAHAGS
Ga0187846_101989122	3300021476	Biofilm	GANDTQKASQQLVETSAQLRRLVEQFRIDAQERAGSGIAGASAQSRAAYAGK
Ga0210410_113007781	3300021479	Soil	GATDTQKASQQLVETSTQLRRLVEQFKINANSNGNSAGASSGPRAIATHAGA
Ga0224558_10770162	3300023090	Soil	QSTTRGATETQKASQQLLETSAELRRLVEQFKINAGENGRENRAASTQERNMAARAGS
Ga0224558_11638112	3300023090	Soil	GVAQAAESTSRGASDTQKAAQQLVETSAELRRLVEQFKVNASENGRGNGAVVSQERSMRAHAGS
Ga0208194_10481392	3300025412	Peatland	MTGVAEAAQGTTRGATDTQKASQQLVETANQLRRLVEQFKINTGSSGYGIGGGEPARTRAAHA
Ga0208036_10266102	3300025419	Peatland	QKASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA
Ga0208456_10463541	3300025441	Peatland	AEAAQSTTHGATETQKASQQLLETSAELRRLVEQFKINAGENGRENRAASTQERSRAARAGA
Ga0208034_10103191	3300025442	Peatland	HGATETQKASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA
Ga0208034_10466822	3300025442	Peatland	LVETSAELRRLVEQFKINASGNGATATQERSKAAHAGS
Ga0208037_10281491	3300025448	Peatland	TTHGATETQKASQQLLETSAELRRLVEQFKINAGENGAAASQARSRAARAGA
Ga0208190_10072431	3300025473	Peatland	KAAQQLVETSAELRRLVEQFKVNASENGRGNGAVVSQERSMRAHAGS
Ga0209647_10536043	3300026319	Grasslands Soil	STTRGASDTQKASQQLVETSTQLRRLVEQFKINVSENNRGNSTAAIQMQSKAARAGS
Ga0209115_10094351	3300027567	Forest Soil	QSTTRGAADTQKASQQLVETSTQLRRLLEQFKIDTGNHRAASDAVRSKAARAGA
Ga0209726_100745901	3300027815	Groundwater	GVAQAAESTSRGATDTQKAAQQLVETSAELRRLVEQFKINAGENGRGNGAAVTQAQSMAARAGS
Ga0209274_102777511	3300027853	Soil	AQSTTRGATDTQKASQQLVETSAQLRRLVEQFKINAGSGHEEDAARIQTQSKATHAGA
Ga0302278_101667662	3300028866	Bog	DLVETSTQLRRLVEQFKIGSNENAHAGAANSRAAQAGS
Ga0246001_10485181	3300029889	Peat	AQSTTHGATETQKASQQLLETSAELRRLVEQFKINAGENGRENRAASTQERSRAARAGA
Ga0302276_102370642	3300029992	Bog	DSQKAAQDLVETSTQLRRLVEQFKIGSNENAHAGAANSRAAQAGS
Ga0311338_104900232	3300030007	Palsa	KAAQDLVETSTQLRRLVEQFKIGSNENAHAGAANSRAAQAGS
Ga0302193_102564202	3300030519	Bog	ATDTQKASQQLVETSNQLRHLVEQFKISAEENAATGGAVRSKAARAGS
Ga0265770_10849411	3300030878	Soil	STTRGATDTQKASQQLVETSAQLRRLVEQFKLNPGNRQDEGAARDSTQKRAAHAGA
Ga0302140_102153033	3300031261	Bog	GASDTQKAAQDLVETSKQLRRLVEQFKINSNETARGGGAASPTLSRAAHVGS
Ga0310686_1003312081	3300031708	Soil	QAAESTSRGASDTQKAAQQLVETSAELRRLVEQFKIDSNETIRRNRGSETLAQSRAARAS
Ga0310686_1078080031	3300031708	Soil	QAAESTSRGASDTQKAAQQLVETSAELRRLVEQFKIDSNETIRRNRGSETLAQSRATHAG
Ga0310686_1092040611	3300031708	Soil	EAAQSTTRGATDTQKASQQLVETSAQLRRLVEQFKINAGSGHEGDAARIQTQSKTAHAGA
Ga0310686_1190181032	3300031708	Soil	SRQLVETSTQLRRLVEQFKIEANNGRRVNGEANQAESRAAHAGA
Ga0307476_108989781	3300031715	Hardwood Forest Soil	GAGDTQKASQQLVETSAQLRRLVEQFKINASTGQIAAGSQADASMAAHAGY
Ga0307479_102451953	3300031962	Hardwood Forest Soil	AAQSTTRGATDTQKASQQLVETSTQLRHLVEQFKINVSEDSRGNGAAATPAQSKAAHAGS
Ga0307479_112013292	3300031962	Hardwood Forest Soil	QRASQQLVETSTQLRRLVEQFKINASENSRGNGAAAAQAQSKAAHAGS
Ga0311301_106669823	3300032160	Peatlands Soil	GTTRGASDTQKASQQLVETSAELRRLVEQFKINAGENGAAASPARSRAAHAGS
Ga0311301_110206231	3300032160	Peatlands Soil	QGTTRGATDTQKASQQLVETSTQLRRLIEQFKTNESARGNGAAGTGARSMAAHA
Ga0335078_104808012	3300032805	Soil	TSRGANDTQKAAQQLVETSAELRRLVEQFRINAGEPAGTNSSTSRAVAARAGV
Ga0326726_123392222	3300033433	Peat Soil	TQKASQQLVETSAELRRLVEQFRIKASGNGGAATQAQSRAAHAGA
Ga0370483_0029211_1499_1669	3300034124	Untreated Peat Soil	AAESTSRGATDTQKAAQQLVETSAELRRLVEQFKINTGEASVASHALQSRAAGAGM
Ga0370501_0140819_637_831	3300034195	Untreated Peat Soil	AGVAQAAESTSRGASDTQKASQQLVETSAELRRLVEQFTIGAGGDRGSHGAALHAKGRAAGAGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078982

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences