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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F079002 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 116 |
| Average Sequence Length | 57 residues |
| Representative Sequence | MSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Number of Associated Samples | 65 |
| Number of Associated Scaffolds | 116 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 51.72 % |
| % of genes near scaffold ends (potentially truncated) | 50.86 % |
| % of genes from short scaffolds (< 2000 bps) | 98.28 % |
| Associated GOLD sequencing projects | 63 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.18 |
| Hidden Markov Model |
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| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (79.310 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere (18.103 % of family members) |
| Environment Ontology (ENVO) | Unclassified (30.172 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (54.310 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
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| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 3.66% β-sheet: 0.00% Coil/Unstructured: 96.34% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.18 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 116 Family Scaffolds |
|---|---|---|
| PF01436 | NHL | 4.31 |
| PF08883 | DOPA_dioxygen | 3.45 |
| PF13340 | DUF4096 | 1.72 |
| PF13384 | HTH_23 | 1.72 |
| PF13358 | DDE_3 | 1.72 |
| PF13586 | DDE_Tnp_1_2 | 0.86 |
| PF13701 | DDE_Tnp_1_4 | 0.86 |
| PF01609 | DDE_Tnp_1 | 0.86 |
| PF13333 | rve_2 | 0.86 |
| PF17170 | DUF5128 | 0.86 |
| PF12760 | Zn_Tnp_IS1595 | 0.86 |
| COG ID | Name | Functional Category | % Frequency in 116 Family Scaffolds |
|---|---|---|---|
| COG3805 | Aromatic ring-cleaving dioxygenase | Secondary metabolites biosynthesis, transport and catabolism [Q] | 3.45 |
| COG3039 | Transposase and inactivated derivatives, IS5 family | Mobilome: prophages, transposons [X] | 0.86 |
| COG3293 | Transposase | Mobilome: prophages, transposons [X] | 0.86 |
| COG3385 | IS4 transposase InsG | Mobilome: prophages, transposons [X] | 0.86 |
| COG5421 | Transposase | Mobilome: prophages, transposons [X] | 0.86 |
| COG5433 | Predicted transposase YbfD/YdcC associated with H repeats | Mobilome: prophages, transposons [X] | 0.86 |
| COG5659 | SRSO17 transposase | Mobilome: prophages, transposons [X] | 0.86 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 79.31 % |
| All Organisms | root | All Organisms | 20.69 % |
| Visualization |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 18.10% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 18.10% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 10.34% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 7.76% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 6.03% |
| Serpentine Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil | 3.45% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 3.45% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 2.59% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 2.59% |
| Host-Associated | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated | 2.59% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.59% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.59% |
| Groundwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment | 1.72% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.72% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.72% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.72% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.72% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 1.72% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.86% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.86% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.86% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.86% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.86% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.86% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.86% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.86% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.86% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.86% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.86% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300002568 | Grasslands soil microbial communities from Hopland, California, USA - 2 | Environmental | Open in IMG/M |
| 3300003162 | Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_21 (Metagenome Metatranscriptome, Counting Only) | Host-Associated | Open in IMG/M |
| 3300003693 | Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300004114 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5 | Environmental | Open in IMG/M |
| 3300004798 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300004799 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300004803 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
| 3300005329 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG | Environmental | Open in IMG/M |
| 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
| 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
| 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005587 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 | Environmental | Open in IMG/M |
| 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Environmental | Open in IMG/M |
| 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Host-Associated | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009789 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28 | Environmental | Open in IMG/M |
| 3300010044 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60 | Environmental | Open in IMG/M |
| 3300010045 | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61 | Environmental | Open in IMG/M |
| 3300010133 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010152 | Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300011332 | Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
| 3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014488 | Bulk soil microbial communities from Mexico - San Felipe (SF) metaG | Environmental | Open in IMG/M |
| 3300015261 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
| 3300019263 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300020075 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020080 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300021951 | Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300030784 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 6A (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030785 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030858 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030905 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030960 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030989 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031039 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031058 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031082 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031089 | Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031091 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031092 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031093 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031094 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031096 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031099 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031114 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031422 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031996 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| C688J35102_1179000751 | 3300002568 | Soil | MSDRERDPKAGIRKEQPQPVIGSDVPDESKERHTEIAVEVGHQDDSKKGETSR* |
| C688J35102_1198113021 | 3300002568 | Soil | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHKDDSKKNEKSR* |
| C688J35102_1201565072 | 3300002568 | Soil | MSDRERDPKAGTNPKEKHPPVVGSDVPDESKERHTEIAVEVGRQDDSKKGETSR* |
| Ga0006778J45830_10109451 | 3300003162 | Avena Fatua Rhizosphere | VWRAAHAATRGRFVMSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0006778J45830_10915711 | 3300003162 | Avena Fatua Rhizosphere | RVRGKRSNQGRFVMSDRERDPKAGTKPKEQRQPVVGRDVPDESKEHHTEIAVEAGHQDGSKKGKESR* |
| Ga0032354_10476881 | 3300003693 | Avena Fatua Rhizosphere | AATRGRFVMSDRERDPKAEIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0062593_1013305901 | 3300004114 | Soil | MSDRERDPKARISPIEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0058859_117588781 | 3300004798 | Host-Associated | AAHAATRGRFVMSDRERDPKARISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0058863_118622992 | 3300004799 | Host-Associated | MSDRERDPKAGTKSKEQRQPVVGRDVPDESKEHHTEIAVEAGHHDGNKKDEKSR* |
| Ga0058862_126320921 | 3300004803 | Host-Associated | MSDRERDPKAGTKSKEQRQPVVGRDVPDESKEHHTEIAVEAGHQDNRKKGEKSR* |
| Ga0070683_1004064183 | 3300005329 | Corn Rhizosphere | KAGISPKEQPQPVVGRDVPDESKERHTEIAVEAGHQDDSKKREKSR* |
| Ga0070700_1010525441 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0070684_1001456092 | 3300005535 | Corn Rhizosphere | MSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0070686_1015599351 | 3300005544 | Switchgrass Rhizosphere | MSDRERDPKDGINPTEKRQPVVGNDVPDESKERHTEIAVEVGHQD |
| Ga0070664_1009904771 | 3300005564 | Corn Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKS |
| Ga0066654_108526711 | 3300005587 | Soil | MSDRERDPKAGIDPKEQPQPVVGRDVPDESKEHHTEIAVEAGHQDDRKKGEKSR* |
| Ga0070702_1004916802 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDRERDPKAGISPKEQPQPVVGRDVPDESKEHHTEIAVEVGQQDDSKNGEKSR*CF*Q* |
| Ga0068864_1005589972 | 3300005618 | Switchgrass Rhizosphere | MSDRERDPNAGISPKKQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0070712_1016841311 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | RDPKAGISPKEQSQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0079222_124230502 | 3300006755 | Agricultural Soil | MSDRERDPKAGINPKEKRQPVVGSDVPDESKEHHTEIAVEVGHQDDSKKGEKSR* |
| Ga0105243_103549703 | 3300009148 | Miscanthus Rhizosphere | PKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSP* |
| Ga0105243_131044111 | 3300009148 | Miscanthus Rhizosphere | MSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVDAGRQNDSKKGEKSR* |
| Ga0111538_103555812 | 3300009156 | Populus Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSP* |
| Ga0111538_114289381 | 3300009156 | Populus Rhizosphere | MSDRERDPKAEINPKEKRQPIVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0105242_124388911 | 3300009176 | Miscanthus Rhizosphere | MSDRERDPKARISPKEHPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0126307_105330851 | 3300009789 | Serpentine Soil | MSDRERDPKARISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0126310_111633331 | 3300010044 | Serpentine Soil | MSDRERDPNAGISPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKNEKSR* |
| Ga0126310_114423431 | 3300010044 | Serpentine Soil | MSDRERDPKAEIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0126311_116731401 | 3300010045 | Serpentine Soil | MSDRERDPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0127459_11927091 | 3300010133 | Grasslands Soil | MSDRERDPKAGIDPKEQPQPVVGRDVTDESKEHHTEIAVEAGHQDDSKKGKKSR* |
| Ga0126318_104272321 | 3300010152 | Soil | MSDRERDPNAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKNEKSR* |
| Ga0126318_105318071 | 3300010152 | Soil | HAANAATRLWFLMSDRERAPKAGTKSKEKRQPVVGRDVPDESKEHHTEIAVEAGHHDDSKKGEKSR* |
| Ga0126318_105759011 | 3300010152 | Soil | AGRAAHAATRGRFVMSDRARDPKTGISPKEQPQPVVGRDVPDESKERHTEIAVEAGRQDDSKKGEKSR* |
| Ga0134123_112983041 | 3300010403 | Terrestrial Soil | MSDRERDQKAGINPKEKRQPVVGSDVPDESKEHHTEIAVEVGHQDDSKKGEKSP* |
| Ga0126317_100110481 | 3300011332 | Soil | HAANAAIRGRFVMSDREHNPKAGSNPKEQHQPVVGRDVPDESKEHHTEIAVEAGHQDGSKKGEKSG* |
| Ga0126317_101893371 | 3300011332 | Soil | ARCAAHAATRGRFVMSDRERDPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0126317_104192341 | 3300011332 | Soil | MSDRERDPKAGISPKEQPQPVVGSDVPDESKERHTEIAVEIGHQDDRKKGEKSR* |
| Ga0126317_109411721 | 3300011332 | Soil | ATGGRFVMSDRERDSKAGIDPKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0150985_1003549131 | 3300012212 | Avena Fatua Rhizosphere | MSDRERDPKAGSKPKDQRQPIVGRDVPDESKEHHTEIAVEAGHQDGNKKGEKSR* |
| Ga0150985_1007519161 | 3300012212 | Avena Fatua Rhizosphere | SDRERDPKAEINPKEKRQPVVGSDVPDESKERHTEIAVEVGNQDDSKTGEKSR* |
| Ga0150985_1018913971 | 3300012212 | Avena Fatua Rhizosphere | MSDRERNPKAGINPKEQRQPVVGRDVPDESKEHHTEIAVEAGHQDGSKKGEKSG* |
| Ga0150985_1022142351 | 3300012212 | Avena Fatua Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKEHHTEIAVEAGHQDGSKKGEKSR* |
| Ga0150985_1031072442 | 3300012212 | Avena Fatua Rhizosphere | RFVMSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQEDSKKGEKSR* |
| Ga0150985_1032273982 | 3300012212 | Avena Fatua Rhizosphere | MSDRERDPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGHQDDSKKGEKSR* |
| Ga0150985_1036462301 | 3300012212 | Avena Fatua Rhizosphere | KAGIRKEQPQPVIGRDVPDESKEHHTEIAVEAGRQDDSKKDEKSR* |
| Ga0150985_1054183151 | 3300012212 | Avena Fatua Rhizosphere | MSDHERDPKAASKPQEQRQPVVGRDIPDESKEHHTEIAVEAGHHDSSKKGEKPAKN* |
| Ga0150985_1060653353 | 3300012212 | Avena Fatua Rhizosphere | MSDREHDPKAGTKPKEQRQPVVGRDVPDESKEHHTEIAVEAGHHDGSKKGEKSP* |
| Ga0150985_1061437881 | 3300012212 | Avena Fatua Rhizosphere | MSDRERNPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0150985_1063245431 | 3300012212 | Avena Fatua Rhizosphere | ERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKKGETSR* |
| Ga0150985_1094309491 | 3300012212 | Avena Fatua Rhizosphere | VMSDREHDTKAGINPKEKRPPIVGRDVPDESKEHHTEIAIEAGRQDDSKKGKKSS* |
| Ga0150985_1117653801 | 3300012212 | Avena Fatua Rhizosphere | MSDRERNPKAGINPKEQRQPVVGRDVPDESKEHHTEIAVEAGHQDGSKKGGKSG* |
| Ga0150985_1130182261 | 3300012212 | Avena Fatua Rhizosphere | MSDHERDPKAASKPQEQRKPVVGREIPDESKERHTEIAVEAGHHDGSEKGKKSR* |
| Ga0150985_1135756891 | 3300012212 | Avena Fatua Rhizosphere | RFVMSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKRGEKSR* |
| Ga0150985_1140547341 | 3300012212 | Avena Fatua Rhizosphere | MSDRERDPKAGITPKEKRQPVVGRDVPDESKERHTEIAIEVGQDDSKEAEKSR* |
| Ga0150985_1161337141 | 3300012212 | Avena Fatua Rhizosphere | GISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQNDSKKGEKSR* |
| Ga0150985_1169047751 | 3300012212 | Avena Fatua Rhizosphere | MSDRERDPKAGTNPKEKRPPVVGSDVPDESKERHTEIAVEVGHQDDSKKNEKSR* |
| Ga0150985_1172679791 | 3300012212 | Avena Fatua Rhizosphere | TRRRFAMPDQERDPKTASNPQEQRQPDVGRDVPDESKEHHTEIAVEAGHHDGSKKGEKSR |
| Ga0150985_1187652261 | 3300012212 | Avena Fatua Rhizosphere | MSDREREPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVESGRQDDSKKGEKSR* |
| Ga0150985_1213221292 | 3300012212 | Avena Fatua Rhizosphere | VMSDREHDTKAGINPKEKRPPIVGRDVPDESKEHHTEIAIGAGRQDDSKKGEKSR* |
| Ga0150984_1014173311 | 3300012469 | Avena Fatua Rhizosphere | MSDRERDPKAGIRKEQPQPVIGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR* |
| Ga0150984_1081928391 | 3300012469 | Avena Fatua Rhizosphere | MSDRERDPKAGIGPKEQPQPIVGRDVPDESKEHHTEIAVEAGHQDGSKKGEKSG* |
| Ga0150984_1102899231 | 3300012469 | Avena Fatua Rhizosphere | AANAAIRGRFVMSDRERNPKAGSNPKEQHQPVVGRDVPDESKEHHTEIAVEVGHQDGSKKGEKSG* |
| Ga0150984_1125532561 | 3300012469 | Avena Fatua Rhizosphere | HAATRGRFVMSDRERDPKSGIRKEQPQPVVGRDVPDESKEHNTEIAVEAGRQDDSKKGEKSR* |
| Ga0150984_1168542871 | 3300012469 | Avena Fatua Rhizosphere | MSDRERDPKAGISPKEQPRPIVGRDVPDESKERHTEIAVEAGHQDDSKKGEKSR* |
| Ga0150984_1169050431 | 3300012469 | Avena Fatua Rhizosphere | MSDRERDPKAGISSKEQPQPVVGRDVPDESKEHHTEIAVESGHQDNSKKGEKSR* |
| Ga0150984_1216198843 | 3300012469 | Avena Fatua Rhizosphere | GRTVMSDRERDPKAGINPKEKRSPVVGSDVPDESKERHTEIAVEVGKDDSKKAEESR* |
| Ga0150984_1216710262 | 3300012469 | Avena Fatua Rhizosphere | MSDRKRDPKAEINPKEKRQPVVGSDLPDESKERHTEIAVEVGRQDDGKTAEKSR* |
| Ga0150984_1235802872 | 3300012469 | Avena Fatua Rhizosphere | FVMSDRERNPKAGINPKEQRQPVVGRDVPDESKEHHTEIAVEAGRQGDSKKGEKSR* |
| Ga0164299_103163901 | 3300012958 | Soil | MSDRERDPKAGINPKEKRQPVVGSDVPDESKEHHTEIAVEVGHQDDSKKGEKSP* |
| Ga0163162_107434421 | 3300013306 | Switchgrass Rhizosphere | GRFVMSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSP* |
| Ga0163163_131622311 | 3300014325 | Switchgrass Rhizosphere | GRFVMSDRERDPKAGISPKEQPRPIVGRDVPDESKERHTEIAVEAGHQDGNKKGEKSG* |
| Ga0182001_100918222 | 3300014488 | Soil | MSDRERDPKAGINPKEKHQPVVGSDVPDESKEHHTEIAVEVGRQDDNKKGEKSR* |
| Ga0182006_12830891 | 3300015261 | Rhizosphere | MSDRERDPKAGINPKENRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR* |
| Ga0132255_1026974781 | 3300015374 | Arabidopsis Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQD |
| Ga0163161_107757012 | 3300017792 | Switchgrass Rhizosphere | MSDRERDPKARISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0184647_12402461 | 3300019263 | Groundwater Sediment | AEYAGDAATRRRCIMSNRDRDPKAGIKPKEQRQPVVGRDVPDESKEHHTEIAVEAGHHDGGKKDEKSR |
| Ga0206349_17184031 | 3300020075 | Corn, Switchgrass And Miscanthus Rhizosphere | AGRAAHAATRGRFIMSDRERDPKTGIRKERPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
| Ga0206350_103810051 | 3300020080 | Corn, Switchgrass And Miscanthus Rhizosphere | VGRAAHAATRGRFVMSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0222624_12946301 | 3300021951 | Groundwater Sediment | SDRERNPKTGMDQKEKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKTAEKSR |
| Ga0224712_105782671 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | HAAHAATRGRFVMSDREHDPKAKINPKEKRQPVVGRDVPDESKERHTEIAVEAGRQEDSKKGAKFR |
| Ga0224712_106624891 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | MSDRERDPKTGIRKERPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
| Ga0207679_107796112 | 3300025945 | Corn Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSP |
| Ga0207639_120665032 | 3300026041 | Corn Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSK |
| Ga0207702_122412032 | 3300026078 | Corn Rhizosphere | MSDRERDPKAGINLKEKRQPVVGSDVPDESKEHHTEIAVEAGHQDSSKKGEKSR |
| Ga0207676_113476841 | 3300026095 | Switchgrass Rhizosphere | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0207675_1016022041 | 3300026118 | Switchgrass Rhizosphere | FVMSDRERDPKARISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0102758_100108391 | 3300030784 | Soil | MSDRERDPKAGINPKEKPQPVVGSDVPDESKERHTEIAVEVGRQDDSKKGETSR |
| Ga0102757_114812642 | 3300030785 | Soil | AAHVATRGRFVMSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0102759_10006201 | 3300030858 | Soil | ATRGRFVMSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKS |
| Ga0102759_10074451 | 3300030858 | Soil | MSDRERDPKAGINPTEKRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKDEKSR |
| Ga0102759_19264192 | 3300030858 | Soil | MSDRERDPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
| Ga0102759_19715861 | 3300030858 | Soil | HAATRGRFVMSDRERDPKAGINPKEKHQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308200_10364701 | 3300030905 | Soil | AGCAVHGATRGRFAMSDRERDPKAGINPKEKRQPIVGSDVPDESKERHTEIAVEVGHQDDSKTGEKSR |
| Ga0308200_10516651 | 3300030905 | Soil | MSDRERDPKTGMDPKEKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKTAEKSR |
| Ga0308200_10562391 | 3300030905 | Soil | MSDRERDPKDGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308200_11826942 | 3300030905 | Soil | MSDRERDPKAGINPKEKRQPVVGSDVPDESKEHHTEIAVEVGHQDDSKKGEKSR |
| Ga0102745_18423011 | 3300030960 | Soil | MSDRERDPKAGINPKEKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKKGETSR |
| Ga0308196_10583141 | 3300030989 | Soil | PIWRAAHAATRGRFVMSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0102760_109802971 | 3300031039 | Soil | MSDRERNPKAGSNPKEQHQPVVGRDVPDESKEHHTEIAVEAGHQEDGKKSEKSP |
| Ga0308189_100611581 | 3300031058 | Soil | PAGRAAHAATRGRFVMSDRERDPKAGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
| Ga0308189_102173051 | 3300031058 | Soil | RWARGKRSNRGRFVMSDRERDPKAGIKPKEQRQPVVGRDVPDESKERHTEIAVEAGHHDDSKKGEKSR |
| Ga0308189_102207551 | 3300031058 | Soil | RGRFVMSDRERDPKARISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308189_105565051 | 3300031058 | Soil | GHAANATIRGKFVMSDRERNPKAGINPKEQRQPVVGRDVPDESKEHHTEIAVEAGLQDGSKKGRKSG |
| Ga0308192_10062433 | 3300031082 | Soil | MSDRERDPKAGIDPKEQSQPIVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308192_10239401 | 3300031082 | Soil | PAGCAAHVATRGRFVMSDRERDPKTGMDPKVKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKTVEKSR |
| Ga0102748_100108922 | 3300031089 | Soil | VMSDRERDPKAGIDPKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
| Ga0308201_100990251 | 3300031091 | Soil | AGCAAHVATRGRFVMSDREREPKTGMDPKDKRQQVVGSDVPDESKERHTEIAVEVGRQDDSKTAEKSR |
| Ga0308204_103408691 | 3300031092 | Soil | PAGCAAHVATRGRFVMSDRERDPKTGMDPKEKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKTAEKSR |
| Ga0308204_103456471 | 3300031092 | Soil | AGRAAHAATIGRFIMSDRERDPKAGINPKENRQPVVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308197_103118961 | 3300031093 | Soil | AGCAAHVATRGRFVMSDRERDPKTGMDPKEKRQPVVGSDVPDESKERHTEIAVEVGRQDDSKTAEKSR |
| Ga0308199_10666881 | 3300031094 | Soil | IWRAAHAATRGRFVMSDRERDPIAGISPKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
| Ga0308193_10839371 | 3300031096 | Soil | IWRAAHAATRGRFVMSDRERDPIAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308181_11314291 | 3300031099 | Soil | FAMSDRERDPKAGINPKEKRQPIVGSDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308187_104345131 | 3300031114 | Soil | MSDRERDPKNGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGEKSR |
| Ga0308186_10142291 | 3300031422 | Soil | MSDRERDPKAGISPKEQPQPVVGRDVPDESKERHTEIAVEVGHQDDSKKGKKSR |
| Ga0308176_109365931 | 3300031996 | Soil | MSDRERDPKSGIRKEQPQPVVGRDVPDESKEHHTEIAVEAGRQDDSKKGEKSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |