Metagenome / Metatranscriptome Family F079080

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079080
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	68 residues
Representative Sequence	MTAAINSAISPFAQPEPEPNANAIRFLDEKLTSVPASDIPEDFRKLSRYLPVIVLVPKSAVEDKATQK
Number of Associated Samples	85
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.14 %
% of genes near scaffold ends (potentially truncated)	99.14 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.069 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.103 % of family members)
Environment Ontology (ENVO)	Unclassified (42.241 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.345 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.83% β-sheet: 0.00% Coil/Unstructured: 79.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF08281	Sigma70_r4_2	43.10
PF02954	HTH_8	6.03
PF13561	adh_short_C2	3.45
PF05368	NmrA	3.45
PF08447	PAS_3	3.45
PF05199	GMC_oxred_C	2.59
PF13191	AAA_16	0.86
PF00486	Trans_reg_C	0.86
PF13460	NAD_binding_10	0.86
PF12697	Abhydrolase_6	0.86
PF00196	GerE	0.86
PF00732	GMC_oxred_N	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	3.45

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.07 %
Unclassified	root	N/A	12.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.07 %
Unclassified	root	N/A	12.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.07 %
Unclassified	root	N/A	12.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	61.21 %
Unclassified	root	N/A	12.93 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	45.69 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.93 %
Unclassified	root	N/A	12.93 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.69 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	12.93 %
Unclassified	root	N/A	12.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.69 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12.93 %
Unclassified	root	N/A	12.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.69 %
Unclassified	root	N/A	12.93 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.72 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	0.86 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.69 %
Unclassified	root	N/A	12.93 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.72 %
Caballeronia glathei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia glathei	0.86 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.86 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001087\|JGI12677J13195_1011295	Not Available	623	Open in IMG/M
3300002245\|JGIcombinedJ26739_100109895	All Organisms → cellular organisms → Bacteria	2588	Open in IMG/M
3300002245\|JGIcombinedJ26739_100977102	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	731	Open in IMG/M
3300002914\|JGI25617J43924_10292999	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300005602\|Ga0070762_10071401	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1955	Open in IMG/M
3300006173\|Ga0070716_101377812	Not Available	573	Open in IMG/M
3300006797\|Ga0066659_11127476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300006893\|Ga0073928_10255606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1337	Open in IMG/M
3300006893\|Ga0073928_10858221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300007788\|Ga0099795_10535540	Not Available	550	Open in IMG/M
3300009089\|Ga0099828_11249787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	658	Open in IMG/M
3300009101\|Ga0105247_10974559	Not Available	660	Open in IMG/M
3300009143\|Ga0099792_10712468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300010397\|Ga0134124_10997269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300011270\|Ga0137391_11528945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300012200\|Ga0137382_11268107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300012200\|Ga0137382_11345527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300012202\|Ga0137363_10038606	All Organisms → cellular organisms → Bacteria	3353	Open in IMG/M
3300012203\|Ga0137399_11090494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300012203\|Ga0137399_11638800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300012205\|Ga0137362_10844574	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300012210\|Ga0137378_11106511	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300012362\|Ga0137361_10914194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300012683\|Ga0137398_10240970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1202	Open in IMG/M
3300012683\|Ga0137398_10709197	Not Available	700	Open in IMG/M
3300012917\|Ga0137395_10810741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300012927\|Ga0137416_11267776	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300013297\|Ga0157378_12890107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300013297\|Ga0157378_13202097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300015206\|Ga0167644_1108144	All Organisms → cellular organisms → Bacteria → Acidobacteria	806	Open in IMG/M
3300019887\|Ga0193729_1145939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300020062\|Ga0193724_1033624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia → Caballeronia glathei	1092	Open in IMG/M
3300020199\|Ga0179592_10457832	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300020579\|Ga0210407_10033291	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3834	Open in IMG/M
3300020579\|Ga0210407_10060982	All Organisms → cellular organisms → Bacteria	2824	Open in IMG/M
3300020579\|Ga0210407_11148015	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300020580\|Ga0210403_10258947	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300020580\|Ga0210403_10830065	Not Available	733	Open in IMG/M
3300020582\|Ga0210395_10317834	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1171	Open in IMG/M
3300020582\|Ga0210395_10940721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300020583\|Ga0210401_10254219	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300020583\|Ga0210401_11465000	Not Available	540	Open in IMG/M
3300020583\|Ga0210401_11471117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300021088\|Ga0210404_10365857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300021170\|Ga0210400_10464563	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300021181\|Ga0210388_11001963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300021401\|Ga0210393_10111248	All Organisms → cellular organisms → Bacteria	2185	Open in IMG/M
3300021401\|Ga0210393_11257084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300021402\|Ga0210385_10996659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300021403\|Ga0210397_10623280	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	825	Open in IMG/M
3300021403\|Ga0210397_11186145	Not Available	593	Open in IMG/M
3300021403\|Ga0210397_11281977	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300021403\|Ga0210397_11601056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300021404\|Ga0210389_10135301	All Organisms → cellular organisms → Bacteria	1908	Open in IMG/M
3300021404\|Ga0210389_11017883	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	642	Open in IMG/M
3300021405\|Ga0210387_11025929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300021406\|Ga0210386_10701201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300021407\|Ga0210383_10228534	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300021407\|Ga0210383_10382803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1213	Open in IMG/M
3300021433\|Ga0210391_10006782	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9373	Open in IMG/M
3300021433\|Ga0210391_10092185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2390	Open in IMG/M
3300021433\|Ga0210391_11021082	Not Available	643	Open in IMG/M
3300021474\|Ga0210390_10207556	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1657	Open in IMG/M
3300021474\|Ga0210390_10295717	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1371	Open in IMG/M
3300021474\|Ga0210390_10579960	Not Available	941	Open in IMG/M
3300021474\|Ga0210390_10917666	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300021475\|Ga0210392_11362670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300021559\|Ga0210409_10374441	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1277	Open in IMG/M
3300021559\|Ga0210409_11052615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300022513\|Ga0242667_1054535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300022713\|Ga0242677_1062250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300022715\|Ga0242678_1071140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300022716\|Ga0242673_1017157	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	992	Open in IMG/M
3300022722\|Ga0242657_1069660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300024271\|Ga0224564_1005676	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300025910\|Ga0207684_10265562	All Organisms → cellular organisms → Bacteria	1481	Open in IMG/M
3300025915\|Ga0207693_11388188	Not Available	522	Open in IMG/M
3300026354\|Ga0257180_1005871	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300026355\|Ga0257149_1069480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300026377\|Ga0257171_1008822	All Organisms → cellular organisms → Bacteria	1632	Open in IMG/M
3300026446\|Ga0257178_1060495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300026496\|Ga0257157_1004174	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2166	Open in IMG/M
3300026508\|Ga0257161_1050911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300026508\|Ga0257161_1063542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	752	Open in IMG/M
3300026551\|Ga0209648_10027520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4970	Open in IMG/M
3300026557\|Ga0179587_11093447	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300027080\|Ga0208237_1055970	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300027535\|Ga0209734_1060796	Not Available	716	Open in IMG/M
3300027565\|Ga0209219_1009834	All Organisms → cellular organisms → Bacteria	2193	Open in IMG/M
3300027583\|Ga0209527_1065689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300027610\|Ga0209528_1074871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300027610\|Ga0209528_1083584	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300027643\|Ga0209076_1061595	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300027875\|Ga0209283_10192603	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300027889\|Ga0209380_10601493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300027895\|Ga0209624_11121527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300027908\|Ga0209006_10046480	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3907	Open in IMG/M
3300027908\|Ga0209006_10155979	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300028017\|Ga0265356_1036424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300028047\|Ga0209526_10299148	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300028673\|Ga0257175_1009696	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300030848\|Ga0075388_11201539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300030862\|Ga0265753_1041762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300031057\|Ga0170834_112899882	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300031090\|Ga0265760_10262095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300031446\|Ga0170820_15351244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300031715\|Ga0307476_10088589	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300031715\|Ga0307476_10214479	All Organisms → cellular organisms → Bacteria → Acidobacteria	1400	Open in IMG/M
3300031715\|Ga0307476_10675585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	765	Open in IMG/M
3300031715\|Ga0307476_11345651	Not Available	520	Open in IMG/M
3300031720\|Ga0307469_12286372	Not Available	527	Open in IMG/M
3300031754\|Ga0307475_11043341	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031823\|Ga0307478_10227224	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1510	Open in IMG/M
3300031823\|Ga0307478_10616980	Not Available	907	Open in IMG/M
3300031962\|Ga0307479_10419136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1323	Open in IMG/M
3300032180\|Ga0307471_103725612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.83%
Plants	Host-Associated → Plants	3.45%
Aquatic	Environmental → Aquatic	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.45%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.31%
Loam	Environmental → Terrestrial → Soil → Loam	15.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.10%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.21%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001087	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12677J13195_10112951	3300001087	Forest Soil	MTTAIKDALSPFAQSKTYPNANAIRFLDERLASLPAVDIPEGFRRLSHFIPVI
JGIcombinedJ26739_1001098955	3300002245	Forest Soil	MTTAIKSAVSPFAQPGPEPNGNAIRFLDEKLTSVPASDIPEVFRKLSRFFPVIVLVPKSAVEGEAR
JGIcombinedJ26739_1009771023	3300002245	Forest Soil	MAIAINSAISPFAHPTREPKAHAIRFIDEKLASVPASDIPEDFRKLSRFFPVIVLVPKSAVEDEATQKKMSPHKSVTDLT
JGI25617J43924_102929992	3300002914	Grasslands Soil	MTTAINSAISPFAQPKTEPKADAIRFLDEKLDSMLASGIPEDFRKLSRFFLVIVLVPKSAVEDEAQKKLSPNKSVTDLS
Ga0070762_100714011	3300005602	Soil	MATAVKSVILPFAQPETEPNANTIHFLDEKLASVPVSDIPEDFRKLSRFFPVIVLVPKSA
Ga0070716_1013778121	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTTAIKSAISLFAQPKPEPDANAIRLLNEKPASVPASGIPENFRKLSCFFPVIVLFPKSAVEDEETPKKLKPNKSV
Ga0066659_111274762	3300006797	Soil	MTTAIKSAISPFAEPKTEPKANAILFLDEQLASMPASGIPEEFRKLPHFFSVIVLVPRSAVDDEATQ
Ga0073928_102556061	3300006893	Iron-Sulfur Acid Spring	MTAAIKSAISPFAQSETESNANVIRFLDEKLAAVPVSGIPEEFRKLSRYLPVIVLV
Ga0073928_108582212	3300006893	Iron-Sulfur Acid Spring	MTTAIKSAISPFAQSKTEPKGNAILFLDEQLASMPASGIPEDFRKLSHFFSVIVLVPKSAVE
Ga0099795_105355402	3300007788	Vadose Zone Soil	MTTAINSAISPFAQPKTEPNANANRFLVINLSSVSASDIAEEFRELSRYLPVLVLVPKSAAHDET
Ga0099828_112497871	3300009089	Vadose Zone Soil	MTTAINSAISPFAQLKTEPNANANRFLDEKLASVPASGISEEFRELSRYLPVLVLVPKSAVHD
Ga0105247_109745592	3300009101	Switchgrass Rhizosphere	MTTAINSTISPFAQPNPEPNANVIRFLDEKLSFVPASGIPVNFRNLSRFFPVIVLVPKSAVEDEETQK
Ga0099792_107124681	3300009143	Vadose Zone Soil	MTTAIKSAISPFAQPKPAPNANAIRFLDEKLASVPASGIPHDFRKLSRFFP
Ga0134124_109972692	3300010397	Terrestrial Soil	MTTAPKFTISPFAQPETELNANAIRFLDETLTSVPASSIPEEFRNLSRFWPVIVLVPKSAVHDRTNREKLGPNESVPG
Ga0137391_115289451	3300011270	Vadose Zone Soil	MTTAIKSAISPFAQIETEPNANAIRFLDEKLASVPASGIPDDFRKLSRFFPVIVLV
Ga0137382_112681071	3300012200	Vadose Zone Soil	MTTAIKSAISPFAQAKPEPDANAIRFLDEKLASVPASGIPDDFRKLSRFFPVIVLV
Ga0137382_113455271	3300012200	Vadose Zone Soil	MTTAIKSAISPFAEPKPEPNGNAIRFLNEKPASVPSSGIPDAFRKLSRYLPVIVLVPKSAVEDESTQKKLEPNTSVTALTDTRNVCLPL
Ga0137363_100386063	3300012202	Vadose Zone Soil	MTTAIKSALSPFAQLETEPNANAIRFLDEKLASVPASGIPHDFRKLSRFFPVIVLVPKSAVEDVATQKKLEPNKSVTELT
Ga0137399_110904942	3300012203	Vadose Zone Soil	MTTAINSAISPFAQPKTEPNADAIRFLDEKLASMPASGIPEDFRKLSRFFLMIVLVPKSAVADEAQKKLSPNKSVTD
Ga0137399_116388001	3300012203	Vadose Zone Soil	TAISSAISPFAHSTTEAKADAIRLLDEKLASVPASDIPEDFRRLSRFFPVIVLVPKSAVED*
Ga0137362_108445742	3300012205	Vadose Zone Soil	MTTAIKSAISPFALPRPEPNANAIRFLDEKPASVPASGIPENFRKLSRFFPAIVLVPKSAVEDEETQKK
Ga0137378_111065111	3300012210	Vadose Zone Soil	MTTAINSAISPFAQPKTEPNANAIRFLDEKPASVPASDIPEDFRKLLRFLPAIVLVRKSAVED
Ga0137361_109141941	3300012362	Vadose Zone Soil	MTTAIKSALSPFAQLETEPNANAIRFLDEKLASVPASGIPEDFRKLSRFFPVIVLVLKSAVEDVATQKRLEPNKSVTEFTDTSSVCLP
Ga0137398_102409702	3300012683	Vadose Zone Soil	MTAAIKSAISHFAQPEPDPNTNAIRFLDERLTSVPASGIPEDFRKLSRYLPVIVLVPKSAVEDEATQRKLEPNKSVTDLTDTGNVCLPLGAA
Ga0137398_107091972	3300012683	Vadose Zone Soil	MTTAINSAISPFAHPKTEPNANANRFLDQKLASVPASGISEEFRKLSRYLPVLVLVPKSAVHDETT
Ga0137395_108107411	3300012917	Vadose Zone Soil	MTTATKSAISPFAQPNTEPKANAILFLDEQMASMPASGIPEDFGKLSQFFLVILLV
Ga0137416_112677761	3300012927	Vadose Zone Soil	MISRKSAISPFAQPKPEHNANAIPFLDEKLASVPASGIPGHFRKLSRFFPV
Ga0157378_128901071	3300013297	Miscanthus Rhizosphere	MTAAIKSAISPFAHPELEPNANAIRFLDEKLTSVPASDIPEDFRKLSRYLPVIVLVPKS
Ga0157378_132020971	3300013297	Miscanthus Rhizosphere	MTTAIKSAISPFAQPNPEPNANVIRFLDEKLSFVPASGIPVNFRNLSRFFPVIVLVPKSAVEDEETQKKLKPNKSV
Ga0167644_11081441	3300015206	Glacier Forefield Soil	MKTALKSATSPFAEPNASAICFLDEKLASVPACDIPEDFRRLSSFFPVIVLVPRSAIEDGATPKKVVPNKSATELTDTSNAC
Ga0193729_11459392	3300019887	Soil	MTSAIKSAISPFAQPEPEPNANAIRFLNEKLTSLPASDIPEDFRKLSRYLPVIVLVPKSAVEDESTQKKLAPNKSVTDLTDTGNVCWPLDTA
Ga0193724_10336241	3300020062	Soil	MTTAIKSAISPFAQSKTEPKANAILFLDEQLASMPASGIPEDFRKLSHVFSVIVLVPKS
Ga0179592_104578321	3300020199	Vadose Zone Soil	MTTVITSAISPFAQPKPELNAKAIRFLDEKLASVPASGIPEDFRKLSRFLPVIVLVPKSAVE
Ga0210407_100332911	3300020579	Soil	MTAAINSAIPPFVHPTAEPKSAAIRFLDENLAFVPASDIPEDFRKLSR
Ga0210407_100609821	3300020579	Soil	MATAIKPAISPFAQPETEPNANAILFLDEKFASVSVSSIPEEFRKLSRYLPVIVLVPRSAVHDKTT
Ga0210407_111480151	3300020579	Soil	MTAAIKSAISPFAQPETESNANVIRFLDEKLATVPVSGIPEEFRKLSRYLPVIVLVPKLAVQDETTRKKPV
Ga0210403_102589471	3300020580	Soil	MTAAIKSAISPFAQPEAGPNANAIRFLDEKPTSVPASDIPEAFRKLSRYLPVIVLVPKSAIEDEATQKKLEPNKSVTDLT
Ga0210403_108300651	3300020580	Soil	MTPAMKAAISPFTQSNPGPNANAICFLDENPASVAASGIPENFRKLSHFFLVIVLVPKSAVEDETTQRKPEPNKSVTHVTDRRDI
Ga0210395_103178343	3300020582	Soil	MATAVKSAISSFAQPKTEPSGGAILFLDEKLASVPASNIPEDFRKLSRFFPVIVLVPKSVVADEATPTKLAPNKSVADTRNVCIPMDASKAL
Ga0210395_109407212	3300020582	Soil	MTAAINSAIPPFVHPTAEPKSAAIRFLDENLAFVPASDIPEDFRKLSRFFSVILLVPKSAVEDEAAQKRL
Ga0210401_102542195	3300020583	Soil	MTTAINSAISPFAQPKTEPKADAIRFLDEKLASMLASGIPEDFRKLSRFFLVIVLVP
Ga0210401_114650002	3300020583	Soil	MTTAINSAIFPFAHLMTEPNADAIRFLDEKLASVPAFDITEDFRKLSRFFSVIVLVPKSD
Ga0210401_114711171	3300020583	Soil	MTTATKSVTSPIAQPEMDPSANAIRFLDEKLDSVAVSGIPEEFRKLSRYLPV
Ga0210404_103658572	3300021088	Soil	MTTAINSAISPFAQPKTEPNANANRFLDEKLASVPASGISEEFRKLSRYLPVLVLVPKSAVHGETTQ
Ga0210400_104645632	3300021170	Soil	MTTAINSAIFPFAHLMTEPNADAIRFLDEKLASVPAFDITEDFRKLSRFFSVIVLVPKSDVEDEAARKKLS
Ga0210388_110019631	3300021181	Soil	MTAAINSAIPPFVHPTAEPKSAAIRFLDENLAFVPASDIPEDFRKLSRFFSVILLVPKS
Ga0210393_101112481	3300021401	Soil	MTTAIKSAVSPFAQPGPEPNGNAIRFLDEKLTSVPAFDIPEVFRKLSRFFPVIVLVPKSAVEGEARQKKREQTRSVSDLTDTRNVYLP
Ga0210393_112570842	3300021401	Soil	MATAVKSAIFPVAQPETEPNANAIHFLDEKLASVPASDIPEDFRKLSRFFPVIVLVPKSAVADEATQKKLAPNKSVTAITDTRNVCIPLDAA
Ga0210385_109966591	3300021402	Soil	MTTAINSAISPFANPTAELKANAIRFLDEDLASLPASGIPKEFRKLSRFLLMIVVVPKSAVADEATQKQLSP
Ga0210397_106232801	3300021403	Soil	MTTAINSARSRFARPMTEHKADAIRFLDEKLASVSAFEIPEYFRKLSRFFQVIVLVPKSPVEDGVTQKKLPPNKSATK
Ga0210397_111861451	3300021403	Soil	MTPAMKAAISPFTQSNPGPNANAICFLDENPASVAASGIPENFRKLSHFFLVIVLVPKSAVEDETTQRKPEPNKSVTHVTDRRDICL
Ga0210397_112819771	3300021403	Soil	MATATKSAIYRFAHPETEPNANAIRFLDGKLASVPASDIPEDFRKLSRFFPVIVLVPKSVVENEATQKKLAPNKSVTAFTDTRNVCL
Ga0210397_116010562	3300021403	Soil	MTAAINSAIPPFVHPTAEPKSAAIRFLDENLAFVPASDIPEDFRKLSRFFSVILLVPK
Ga0210389_101353014	3300021404	Soil	MTTAIKSAISPFAQPKPEHNANAIPFLDEKLASVLASGIPANFRKLWRFFPLIVLVPKSAVEDEAIQER
Ga0210389_110178831	3300021404	Soil	MTTAINSAISPFAQPKTEPKADAIRFLDEKLASMLASGIPEDFRKLSRFFLVIVLVPKS
Ga0210387_110259292	3300021405	Soil	MAAAVKFAISPFEQPETELNPNAIRFLDEKLAPVLASDIPEDFRKLSRFFPVIVLIPKTAVEDEANQK
Ga0210386_107012012	3300021406	Soil	MTAAINSAIPPFVHPTAEPKSAAIRFLDENLAFVPASDIPEDFRKLSRFFSVILLVPKSAVEDEAAQKRLSPNKSVTDLT
Ga0210383_102285343	3300021407	Soil	MTTAIKSAVSAFAQPGPEANGNAMRLLDEKLTSVPASDIPEVFRKLSRFFPVIVLVPKSAVEDEATQ
Ga0210383_103828033	3300021407	Soil	MTAAINSAIPPFVHPTAEPKSAAIRFLDENLAFVPASDIPEDFRKLSRFFSVILLVPKSAVEDEAAQKRLSPNKSVTDLTETMSVGSPMEAAKAWLK
Ga0210391_100067827	3300021433	Soil	MATAVKSAISSFAQPKTEPSGGAILFLDEKLASVPASNIPEDFRKLSRFFPVIVLVPKSVVADE
Ga0210391_100921851	3300021433	Soil	MTAAIKSAIFPFAQPTTDANANAIHFLNEKLTFVPASDIPEDFRKLSRFFLVMVLVAKSDVEDQATHKKLKPNKSFPDV
Ga0210391_110210822	3300021433	Soil	MTTAIKSAVSPFAQPGPEPNGNAIRFLDEKLTSVPAFDIPEVFRKLSRFFPVIVLVPK
Ga0210390_102075561	3300021474	Soil	MATAVKSVILPFAQPETEPNANTVHFLDEKLASVPVSDIPEDFRKLSRFFPVIVLVPKSAVEGEATQKKLAPN
Ga0210390_102957173	3300021474	Soil	MATAVKSAISSFAQPKTEPSGGAILFLDEKLASVPASNIPEDFRKLSRFFPVIVLVPK
Ga0210390_105799602	3300021474	Soil	MTAAIKSAIFPFAQPTTDANANAIRFLNEKLAFVPASDIPEDFRKLSRFFLVMVLV
Ga0210390_109176661	3300021474	Soil	MTTAIKSAISLVTQRQTEPNTNAFRFLNENLVSVPASDIPKDFRKLARF
Ga0210392_113626701	3300021475	Soil	MATAIKPAISPFAQPETEPNANAILFLDEKFASVSVSSIPEEFRKLSRYLPVIVLVPRSAVHD
Ga0210409_103744411	3300021559	Soil	MATAVKSVILPFAQPETEPNANTIHFLDEKLASVPVSDIPEDFRKLSRFFPVIVLVPKSAVEGEA
Ga0210409_110526151	3300021559	Soil	MTTAINSAISPFAQPKTEPKADAIRFLDEKLASMPASGIPEDFRKLSRFFLVIVLAPKSAVEDEAQQKLSPNKSVTDLSDTMNVCSPL
Ga0242667_10545351	3300022513	Soil	MATAVKSAISSFAQPKTEPSGGAILFLDEKLASVPASNIPEDFRKLSRFFP
Ga0242677_10622502	3300022713	Soil	MATAVKSVISPFGQPETDPKTNTILFLDEQLASVPVSDIPEDFCKLSRFFPVIVLVPKSAVKDEATQKG
Ga0242678_10711403	3300022715	Soil	MATAVKSAISSFAQPKTEPSGGAILFLDEKLASVPASNIPEDFRKLSRFFPVIVLVPKS
Ga0242673_10171573	3300022716	Soil	MATAVKSAISSFAQPKTEPSGGAILFLDEKLASVPASNIPEDFRKLSRFFPVIVLVPKSVVADEA
Ga0242657_10696602	3300022722	Soil	MTAAIKSAIFPFAQPTTDANANAIRFLNEKLAFVPASDIPEDFRKLSRFFLVMVLVAKSDVEDQATQKK
Ga0224564_10056764	3300024271	Soil	MTTAIKSAISSFAQAKPEHNTNAIPFLDEKLASVPASGIPGKFRKLSRFFPVIVLVPKSAVEDEATQEKLEPNKSVTDLTDTRN
Ga0207684_102655621	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTAAINSAISPFAPPEPEPNASAIRFLDEELTSVPASDIPEDFRKLWRYLPVIVLVPKSA
Ga0207693_113881882	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTTAINSTISPFAQPKTEPKADAIRFLDEKLASMLASGIPEYFRKLSRFFLVIVLAPKSAVEDEAQK
Ga0257180_10058711	3300026354	Soil	MTSRKSAISPFAQPKPEHNANAIPFLDEKLASLPASGIPGNFRKLSRFFPVIVLVPKSAVEDEVTQEKLEPNKSV
Ga0257149_10694801	3300026355	Soil	MTTAIKSAISPFAQPKPAPNANAIRFLDENLATVPASGIPEDFRKLSRFFPVIVLVPKPD
Ga0257171_10088223	3300026377	Soil	MTSRKSAISPFAQPKPEHNANAIPFLDEKLASVPASGIPGNFRKLSRFFP
Ga0257178_10604951	3300026446	Soil	MTTAIKSAISPFAQPKPAPNANAIRFLDENLATVPASGIPEDFRKLSRFFPV
Ga0257157_10041744	3300026496	Soil	MTTAINFAISPFAQPKTEPNANAIRFLDIKLSSVPASDIPEEFRKLSRYLPVLVLVPKSAVDDKTTQK
Ga0257161_10509111	3300026508	Soil	MTTAIKSAISPFAQPKPAPNANAIRFLDENLATVPASGIPEDFRKLSRFFPVIVLV
Ga0257161_10635421	3300026508	Soil	MTTAINSAISPFAQPKTGPNANANRFLDEKLASVPASGISEEFRKLSRYLPVLVLVPKSAVHDETTQKKPGLDKSVT
Ga0209648_100275205	3300026551	Grasslands Soil	MTSRKSAISPFAQPKPEHNANAIPFLDEKLASVPASGIPGNFRKLS
Ga0179587_110934472	3300026557	Vadose Zone Soil	MTTVITSAISPFAQPKPELNAKAIRFLDEKLASVPAFGIPEDFRKLSRFLPVI
Ga0208237_10559701	3300027080	Forest Soil	MTPAMKAAISPFTQPNPAPNDAIRLLDENLASVPASGIPKNFRKLSRFFLVIVLVPKSAVEDETTQTKLEPNKSVTYVTDRQNICLP
Ga0209734_10607961	3300027535	Forest Soil	MTTAIKYALSPFAQPKTDPNANAIRFLDERLASLPAADIPEGFRRLSHFIPVIVLVPKSAFEDEAIQKKLKPN
Ga0209219_10098341	3300027565	Forest Soil	MTTAINSAISPFAQSKTEPNANAIRFLDIKLSSVSASDIAEEFRELSRYLPVLVLVPKSDVHDKTTQKKPGHNKSVAGLIDTSD
Ga0209527_10656891	3300027583	Forest Soil	MTAAIKSAISPFAQPEPEPNANTIRFLNEKLTSVPASDIPEDFRKLSRYLPVIVLVLKSAVEDEATQKKLEPNKSVTVT
Ga0209528_10748711	3300027610	Forest Soil	MAIAINSAISPFAHPTREPKAHAIRFIDEKLASVPASDIPEDFRKLSRFFPVIVLV
Ga0209528_10835841	3300027610	Forest Soil	MTAAINSAISPFAQPEPEPNANAIRFLDEKLTSVPASDIPEDFRKLSRYLPVIVLVPKSAVEDKATQK
Ga0209076_10615951	3300027643	Vadose Zone Soil	MTAAIKSAISPFAQPNTEPKTNAILFLDEQLASMPASGIPEDFRKLSHFFSVIVLVP
Ga0209283_101926031	3300027875	Vadose Zone Soil	MTTAIKSAISPFAQPKPAPNANAIRFLDENLATVPASGIPEDFRKLSRFFPVIVLVPKPDVEDEATQKELEPNKSVTDLTDTR
Ga0209380_106014932	3300027889	Soil	MTTATKSVTSPIAQPEMDPSANAIRFLDEKLDSVAVSGIPEEFRKLSR
Ga0209624_111215271	3300027895	Forest Soil	MATAVKSAIFPVAQPETEPTANAIRFLDEKLASVRASDIPEDFRKLSRFFPVIVLVPKSAVADEATQKKL
Ga0209006_100464807	3300027908	Forest Soil	MTTAIKSAISPFAQPKPEHHANAIPFLDEKLASVPASGIPENFRKLSRFFPVIVLVPKSAVGDEATQEKL
Ga0209006_101559791	3300027908	Forest Soil	MTAVIKSAVSAFAQHGPEPNGNAIRFLDENLTSVPAFDIPEVFRKLSRFFPVIVLVPKSAVEDEA
Ga0265356_10364241	3300028017	Rhizosphere	MTTAIKSAISPFAQPKAEPNANAIRFLDEKLAAAPASGFPEDFRKLSRFFPVIVLVPKSAVEDEATQEKLEPNKSDTNLTDTR
Ga0209526_102991481	3300028047	Forest Soil	MTTAIKSAISPFAQPNTEPKTNAILFLDEQLASMPASGIPEDFRKLSHFFSVIVLVPKSAVEDEATQ
Ga0257175_10096963	3300028673	Soil	MTTAINSAISPFAQPKTGPNANANRFLDEKLASVPASGISEEFRKLSRYLPVLVLVPKS
Ga0075388_112015391	3300030848	Soil	MTTAINSAISPFAQPKTEPNANAIRFLDIKPSSVPASDIPKEFRKLSRYLLVLVLVPRSAVHDKTTQEKP
Ga0265753_10417622	3300030862	Soil	MAAAVKSVILPFAQPETEPNANAIHFLDEKLASVPVSDIPEDFRKLSRFFPVIVLVPKAAVADEATQKKLAPHKSVTALTGTRNV
Ga0170834_1128998821	3300031057	Forest Soil	MTTAINSAISPFAQPKTEPKADAIRFPDEKLASMLASGIPEDLRRLSRFFLVIVLAPKSA
Ga0265760_102620952	3300031090	Soil	MTTATKSVTSPIAQPEMEPNANAIRFLDEKLDSVPVSGIPEEFRKLARYLPVIVLVPKPAVHDK
Ga0170820_153512441	3300031446	Forest Soil	MATAIKSAIFPFAPPKTEASTSAIRFLDEKLASVPASDFPEDFRELSRFFPVIVLVPKSAVEEEAAREKLALNENVPDLRDTRNVFLP
Ga0307476_100885894	3300031715	Hardwood Forest Soil	MTTAIKSAVSPFAQPGPEPNGNAIRFLDEKLTSVPACDIPEVFRKLSRFFPVIVLVPKSAVEGEARQEKREQT
Ga0307476_102144792	3300031715	Hardwood Forest Soil	MTTAINSAIFPFAHLMTEPNADAIRFLDEKLASVPAFDITEDFRKLSRFFSVIVLVPKSDVEDEAARKKLSPNKSATDLTDTLNVCS
Ga0307476_106755851	3300031715	Hardwood Forest Soil	MTAAIKSAISPFAQPETESNANVIRFLDEKLATVPVSGIPEEFRKLSRYLPVIVLVPKS
Ga0307476_113456511	3300031715	Hardwood Forest Soil	MTAAIKSAISPFAQPRPEPNVSAIRFLDEKLASVPAYGIPEDFRKPSRFFAVIVLVPKSAVEDEAIQKKLELNESVADLPEA
Ga0307469_122863721	3300031720	Hardwood Forest Soil	MTTAIKSAISPFAQPNPEPNANAIRFLDEKLSFVPASGIPVNFRKLSRFFPVIVL
Ga0307475_110433412	3300031754	Hardwood Forest Soil	MTTTNNSAIPPFAQPKTEPNAHAIRFLDIELSSVPASDIPEEFRNLSRYLPVLVLVPKSAVHDETT
Ga0307478_102272241	3300031823	Hardwood Forest Soil	MTTAIKYALSPFAQPKTEPNANTIRFINEKLTSVPASGIPEDFRKLSRFFPVIVLVPKSAFEDEAIQKKPEP
Ga0307478_106169801	3300031823	Hardwood Forest Soil	MTAAIKSAIFPFAQPTTDANANAIRFLNEKLAFVPASDIPEDFRKLSRFF
Ga0307479_104191361	3300031962	Hardwood Forest Soil	MTTAINSAISPFAQPKTEPNANANRFLDEKLASVPASGVSEEFRKLSRYLPVLVLVPKSAVHDETTQKKPGLDKSVTGLI
Ga0307471_1037256121	3300032180	Hardwood Forest Soil	MTTAINSAISPFAQPKTEPNAHTIRFLDIKLSSVPASDIPEEFRKLSRYLPVLVLVPTSAVHDETTQKKPGHK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079080

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences