Metagenome / Metatranscriptome Family F079124

Basic Information
Family ID	F079124
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	40 residues
Representative Sequence	VPEPKKLVLIEGADHFFEGRLRELRETIEAWVKEAVNS
Number of Associated Samples	108
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	2.59 %
% of genes from short scaffolds (< 2000 bps)	2.59 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Unclassified (97.414 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.655 % of family members)
Environment Ontology (ENVO)	Unclassified (26.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.310 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.82% β-sheet: 0.00% Coil/Unstructured: 68.18%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13660	DUF4147	73.28
PF04402	SIMPL	2.59
PF00487	FA_desaturase	1.72
PF01694	Rhomboid	1.72
PF00903	Glyoxalase	1.72
PF00072	Response_reg	0.86
PF01346	FKBP_N	0.86
PF01797	Y1_Tnp	0.86
PF12695	Abhydrolase_5	0.86
PF02661	Fic	0.86
PF12706	Lactamase_B_2	0.86
PF00005	ABC_tran	0.86
PF01243	Putative_PNPOx	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	2.59
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	2.59
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	2.59
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	1.72
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	1.72
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	1.72
COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.86

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.41 %
All Organisms	root	All Organisms	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.41 %
cellular organisms	root	All Organisms → cellular organisms	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.41 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.41 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.41 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.72 %

Scaffold	Taxonomy	Length	IMG/M Link
3300010337\|Ga0134062_10045989	All Organisms → cellular organisms → Bacteria → Acidobacteria	1765	Open in IMG/M
3300012201\|Ga0137365_10941592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300012210\|Ga0137378_11155111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.66%
Host-Associated	Host-Associated	10.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.76%
Plants	Host-Associated → Plants	10.34%
Aquatic	Environmental → Aquatic	6.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Freshwater	Environmental → Aquatic → Freshwater	6.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.45%
Peat	Environmental → Terrestrial → Peat	1.72%
Roots	Host-Associated → Plants → Roots	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.62%
Loam	Environmental → Terrestrial → Soil → Loam	13.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.10%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.31%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.72%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.86%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022730	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU2	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A001DRAFT_10667041	3300000893	Forest Soil	SLAEPKRLVIIEAADHFFEGRLREMRETVEGWAKEALTL*
Ga0062388_1000068551	3300004635	Bog Forest Soil	LVQTLPEPKKLVLIEAADHFFEGRLKELRETIEAWVREVLVAPTPKAES*
Ga0070668_1014960252	3300005347	Switchgrass Rhizosphere	GLVHSIPGPKKLVLVPGADHFFEGRLREMRDAIEQWVGEAVSL*
Ga0070688_1013143342	3300005365	Switchgrass Rhizosphere	DKAVGAMAEPKKLVIIEAGDHFFEGRLRELRDAIETWVRETIVS*
Ga0070713_1008045392	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	EALVASLPDPKRLVLIEGGDHFFEGRLREMRETIEVWVKEAVSA*
Ga0066687_100879822	3300005454	Soil	MVSSLPEPKKLVIIPAADHFFEGRLREMRETVETWAREVLS*
Ga0066687_108873541	3300005454	Soil	DSVAPPKELVLIEAGDHFFEGRLAELRRTIENWVRNAVLQQVAH*
Ga0070697_1000627545	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	SVPEPRRLVLIEGADHFFEGRLSELRETIESWIREVVLHG*
Ga0070731_107271872	3300005538	Surface Soil	EQVIQSLPEPKKLVLIEGGDHFFAGRLRELRETIEEWVRQVLGK*
Ga0066701_109470232	3300005552	Soil	LSEPKKLIIVEGADHFFEGRMRELRETIEAWLRELLST*
Ga0066670_104300842	3300005560	Soil	PKKLVIIEGADHFFEGRLHELRNAVESWIKEAQLA*
Ga0066699_104176832	3300005561	Soil	VNSLADPKKLVLIAGADHFFEGRLRELREKIENWVREFLVG*
Ga0070761_104205401	3300005591	Soil	EPKKLVLIEGADHFFEGRLRELRETIESWVKEAVNH*
Ga0070762_110679892	3300005602	Soil	PEPKKLVLIEGGDHFFEGRLREMREAVEAWVGTVRISC*
Ga0068862_1015679181	3300005844	Switchgrass Rhizosphere	KAVGAMAEPKKLVIIEAGDHFFEGRLRELRDAIETWVRETIVS*
Ga0070716_1002972852	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	KKLVVIEGADHFFEGRLRELREAIEAWVKEQIVA*
Ga0070765_1012936211	3300006176	Soil	LIQGADHFFEGRLRELREAIEGWVRQEIVRDLSL*
Ga0097621_1000037501	3300006237	Miscanthus Rhizosphere	KGLIHSIPGPKKLILVPGADHFFEGRLREMRDAIEQWVSEAVNL*
Ga0079222_109074262	3300006755	Agricultural Soil	VASLPEPKRLLIIEGADHFFAGRLAELRKAIEEWVKEQVVVG*
Ga0075425_1007026501	3300006854	Populus Rhizosphere	EPKKLVMIESADHFFEGRLREMRDAIETWVRETGLG*
Ga0075426_108575971	3300006903	Populus Rhizosphere	KKLVIIEGADHFFEGRLHELRNAVESWIKEAQLG*
Ga0075436_1001301821	3300006914	Populus Rhizosphere	PKRLLIIEGADHFFAGRLAELRKAIEEWVKEQVVVG*
Ga0111538_123611611	3300009156	Populus Rhizosphere	AKLQEMVDALPEPRTLVFIESADHFFEGRLREMRESIEEWLRKTIISPP*
Ga0116218_14177672	3300009522	Peatlands Soil	LPEPKKLVIVEGADHFFEGRLRELREGIESWIKERIPD*
Ga0126374_105470042	3300009792	Tropical Forest Soil	ALVQSLAEPKKLVITDAADHFFEGRLREMRESVQGWAKEILQM*
Ga0126384_119327122	3300010046	Tropical Forest Soil	SVAEPKKLVTIGAADHFFEGRLREMREVVESWVKETVLQGEQ*
Ga0134082_100535873	3300010303	Grasslands Soil	PKKLIIVEGADHFFEGRMRELRETIEAWLRELLST*
Ga0134067_100397133	3300010321	Grasslands Soil	PKKLIIVEGADHFFEGRMRELRETIEAWLRECLST*
Ga0134062_100459891	3300010337	Grasslands Soil	ILSEPKKLIIVEGADHFFEGRMRELRETIEAWLRELLST*
Ga0126376_103945291	3300010359	Tropical Forest Soil	ELAHSAAGPKQLVIIDSADHFFEGRLREMREAMENWIRETLDLPS*
Ga0134126_118752001	3300010396	Terrestrial Soil	PEPKKLVIIESADHFFEGRLREMRESIEGWIQEARIV*
Ga0150983_158068291	3300011120	Forest Soil	KKLVIIEAADHFFEGRLREMREAVEGWVGETVRP*
Ga0150983_164809732	3300011120	Forest Soil	KKLVLIEGADHFFEGRLRELREAIEGWVRQEIVRDLSL*
Ga0137389_107390872	3300012096	Vadose Zone Soil	FVKSLPEPRKLVIIEGADHFFEGRVRELRETIEGWVREVVRLV*
Ga0137364_109646811	3300012198	Vadose Zone Soil	AELPEPKKLVIIEAADHFFEGRLREMRDVVEGWARDAVSNTRA*
Ga0137365_109415921	3300012201	Vadose Zone Soil	EPKKLIIVEGADHFFEGRMRELRETIEAWLRELLST*
Ga0137362_111522492	3300012205	Vadose Zone Soil	PEPKKLVLIEGADHFFEGRLRELRETIEVWVRQEIVRDPTL*
Ga0137378_111551112	3300012210	Vadose Zone Soil	LEKLVAILSEPKKLIIVEGADHFFEGRMRELRETIEAWLRELLST*
Ga0137378_118630742	3300012210	Vadose Zone Soil	LEKLVAILSEPKKLIIVEGADHFFEGRMRELRETIEAWLRECLST*
Ga0137387_101080111	3300012349	Vadose Zone Soil	KKLVIIDSADHFFEGRLREMREAIEAWIKDTIGT*
Ga0137367_101621151	3300012353	Vadose Zone Soil	LLSSLPEPKTLVIIDSADHFFEGRLREMRDAIAAWIREKGLA*
Ga0137360_102765263	3300012361	Vadose Zone Soil	VAILSEPKKLIIVEGADHFFEGRMRELRETIEAWLRECLST*
Ga0137390_116845891	3300012363	Vadose Zone Soil	QLEALVRTVSSPKKLVLIAGGDHFFEGRLRELRESIEQWVGEAVIP*
Ga0137359_104295002	3300012923	Vadose Zone Soil	SVPEPKKLVVIEGADHFFEGRLRELRDTIESWVRSEIVHD*
Ga0137419_102219311	3300012925	Vadose Zone Soil	PEPKKLIIIEAADHFFEGRLREMRDAVEGWTRNVVSNTW*
Ga0137404_108363381	3300012929	Vadose Zone Soil	LKALVNSVPEPKKLVLIAGADHFFEGRLREMRECVERWVGEAVNL*
Ga0164299_101064801	3300012958	Soil	HSIPGPKKLVLIPGADHFFEGRLREMRDAIEQWVSEAVNL*
Ga0164301_101519733	3300012960	Soil	LPEPKKLVMIEAADHFFEGRLRAMRETVENWTRETLHL*
Ga0157372_106059293	3300013307	Corn Rhizosphere	QSLPEPKKLVLIEAADHFFEGRLREMRDAIEPWVREITA*
Ga0137412_106658991	3300015242	Vadose Zone Soil	VPEPKKLVVIEGADHFFEGRLRELRETIEGWVRQEIVREVSL*
Ga0132255_1013299371	3300015374	Arabidopsis Rhizosphere	DALPKPKRLVLIESADHFFEGRLREMRESIEEWLRKTIVSPP*
Ga0182036_100321974	3300016270	Soil	FASLSEPKKLVIIPAADHFFEGRLREMRDAVETWTRETLNTPSSL
Ga0182032_119352242	3300016357	Soil	VAPLPGLKKLVIVEAADHFFEGRLREMREEVEGWAREVVREL
Ga0182040_100464254	3300016387	Soil	SEPKKLVIIPAADHFFEGRLREMRDAVETWTRETLNTPSAL
Ga0134069_10078735	3300017654	Grasslands Soil	PKKLIIVEGADHFFEGRMRELRETIEAWLRECLST
Ga0187818_101651091	3300017823	Freshwater Sediment	EPKKLVLIEGADHFFEGRLRELREAIEAWVRQAAAG
Ga0187801_104718502	3300017933	Freshwater Sediment	SVPEPKKLIVIEGADHFFGGRLRELRKAIEAWLREQVALTA
Ga0187781_104807681	3300017972	Tropical Peatland	LVVIDGADHFFEGRLRELRETIEGWVRQEILREVSL
Ga0187782_114230081	3300017975	Tropical Peatland	SLSQPKRLVLIEGADHFFEGRLRELREVIEGWIREVIVEEPRSS
Ga0187878_10084241	3300018005	Peatland	LVVIQGADHFFEGRLRELREAIESWVREEIVRDVSL
Ga0187889_103642992	3300018023	Peatland	LPEPKKLVVIEGADHFFEGRLRELREAIATWVEEEILQQASL
Ga0187875_103215851	3300018035	Peatland	EPKKLVMIQGADHFFEGRLRELRDAIEVWIKESIPR
Ga0187862_101366941	3300018040	Peatland	KKLVVIEGADHFFEGRLRELREAIATWVEEEILRQASL
Ga0187772_102779182	3300018085	Tropical Peatland	KLIRIEAADHFFEGRLKEMRETIEAWLRDFLATDQRPPGD
Ga0187769_109294481	3300018086	Tropical Peatland	EPKKLVVIDGGDHFFAGRLRELRGAIESWVREQVIKTP
Ga0066667_121992132	3300018433	Grasslands Soil	EPKKLVFVEGADHFFEGRLREVRATIESWVREEILG
Ga0066662_101024531	3300018468	Grasslands Soil	ELAATFPEPKKLVIIEGADHFFEGRLRELRDAIESWLKQAKLT
Ga0193728_10243985	3300019890	Soil	ASAAEAKKLVVIEGADHFFEGRLRELRETIEGWVRQEIERQGSL
Ga0193755_11291141	3300020004	Soil	VRSVSDPKKLILIAGGDHFFEGRLRELREAIEQWVGEAVIP
Ga0210403_105509051	3300020580	Soil	LVTSLPEPKKLVLIQGADHFFEGRLRELREAIEGWVRQEIVRDLSL
Ga0210405_106707611	3300021171	Soil	LPEPKKLVMIQGADHFFEGRLRELREAIEAWIKESIPH
Ga0210408_105491371	3300021178	Soil	LVRTVSSPKKLVLIAGGDHFFEGRLRELRESIEQWVGEAVIP
Ga0210384_114483771	3300021432	Soil	ALVASVPEPKKLVLIEAGDHFFEGRLRELREAIEAWVKDEVTHSA
Ga0210384_115622741	3300021432	Soil	PEPKKLVIVEGADHFFEGCLRELREAIEMWVREVLF
Ga0210390_110790741	3300021474	Soil	KKLVVIEGADHFFEGRLRELREAIESWVRQRIVGKPSI
Ga0210398_105638061	3300021477	Soil	ALVASVPEPKKLVIIEGADHFFEGRLRELREAIETWMKEAI
Ga0210402_103413523	3300021478	Soil	LPEPKRLHIVEGADHFFAGRLEEVGATITDWLAQT
Ga0210402_106807852	3300021478	Soil	QLPEPKKLVIIPAADHFFEGRLREMREAVETWTRETLASQVR
Ga0210402_111316271	3300021478	Soil	TVSSPKKLVLIAGGDHFFEGRLRELRESVEQWVGEAVIP
Ga0224570_1030722	3300022730	Rhizosphere	IPEPKKLVLIEGGDHFFEGRLRELRETIEAWLKEAVG
Ga0207667_101148244	3300025949	Corn Rhizosphere	RVLLGKAVGAMAEPKKLVIIEAGDHFFEGRLRELRDAIETWVRETIVS
Ga0207640_106607271	3300025981	Corn Rhizosphere	SERKKLVIIESADHFFEGRLKEMREATEAWVKEMIQ
Ga0209234_100079212	3300026295	Grasslands Soil	LEKLVAILSEPKKLIIVEGADHFFEGRMRELRETIEAWLRECLST
Ga0209239_10947903	3300026310	Grasslands Soil	AILSEPKKLIIVEGADHFFEGRMRELRETIEAWLRELLST
Ga0209686_10917542	3300026315	Soil	ENLGANVPEPKKLVFVEGADHFFEGRLREVRATIESWVREEILG
Ga0209471_13256332	3300026318	Soil	PEPKKLVLIEGADHFFAGRLRELREGIEKWAKETVAI
Ga0209687_11037131	3300026322	Soil	PEPKKLLLIEGADHFFAGRLRELREAIEKWVKEVVAI
Ga0257176_10569982	3300026361	Soil	PKKLVLVGGADHFFEGRLREMRETVVQWVGDVVNL
Ga0179587_103814251	3300026557	Vadose Zone Soil	ALVAGLPEPKKLIIIEAADHFFEGRLREMRDAVEGWTRNVVSNTW
Ga0207781_10234172	3300026890	Tropical Forest Soil	VASTPEPKKLVTIEGADHFFEGRLRELRDAIETWTKEVTRSA
Ga0208603_10077791	3300027109	Forest Soil	PEPKKLVLIAGADHFFAGRLRELREAIETWVTETRT
Ga0209524_11374452	3300027521	Forest Soil	PKKLVLIEGADHFFEGRLRELREAIESFIREQVVV
Ga0209009_11963901	3300027667	Forest Soil	PKKLVLIAGADHFFEGRLREMRETVEQWVGEAVNL
Ga0209626_10220732	3300027684	Forest Soil	VVAELPEPKKLVIVEGADHFFEGRLLELRESIEGWIKESVHA
Ga0209248_101855882	3300027729	Bog Forest Soil	EALVASAPEPKKLVLIEGGDHFFEGRLRELRETIEGWVKEAISCQPLAIS
Ga0209579_100689601	3300027869	Surface Soil	IPEPKKLVLIEGADHFFEGRLREMRESMEAWVKEAVTS
Ga0209283_100144846	3300027875	Vadose Zone Soil	QGLVESLSAPRKLVLIEGADHFFEGRLRELREAIETWVREVVRLV
Ga0209380_101237771	3300027889	Soil	VLIEGADHFFEGRLRELRETIEVWVRQAIVQDQSL
Ga0137415_104025031	3300028536	Vadose Zone Soil	ATRLRALVGSVPEPKKLVLIAGGDHFFEGRLRELREIVEQWVGDVVNL
Ga0307312_108621552	3300028828	Soil	SAQLKVLVGSLPQPKTLVLIGGADHFFEGRLRELRETIEQWLADAVNL
Ga0311330_112211761	3300029945	Bog	IASLPEPKKLVVIEGADHFFEGRLRELRETIESWVREEIVRAMSL
Ga0311357_101582891	3300030524	Palsa	KKLVVIEGADHFFEGRLRELRDAIEDWVRQVIVRDPSL
Ga0075374_105050291	3300030855	Soil	KKLVLIEGADHFFEGRLREMRETIEAWVKEADGCL
Ga0265765_10016163	3300030879	Soil	VVIEGADHFFEGRLRELREAIEGWVRETIVEGPSI
Ga0170834_1124318711	3300031057	Forest Soil	EPKKLVVIEGADHFFEGRLRELRETIEEWVRQTVIGNPAV
Ga0310686_1007732552	3300031708	Soil	VPEPKKLVLIEGADHFFEGRLRELRETIEAWVKEAVNS
Ga0318492_102754831	3300031748	Soil	AALVACLPEPKELVIIEAADHFFEGRLREMREAIEHWVRDVGLAV
Ga0307475_104207291	3300031754	Hardwood Forest Soil	EPKKLVLIAGADHFFEGRLRELRETIVEWIGDAVNL
Ga0307471_1033353721	3300032180	Hardwood Forest Soil	PKPRKLVLIQGADHFFEGRLREMRETVEQWVGDAVNL
Ga0307471_1039530851	3300032180	Hardwood Forest Soil	KLEALVASVSQPKKLIVIEGADHLCEGRLRELREAIEVWVRQQIVREVSA
Ga0335079_110128432	3300032783	Soil	GPCKLAFIEGADHFFEGRLRELREVIEAWVRESVLVIGKAV
Ga0335079_117910821	3300032783	Soil	KKLVLIEAADHFFEGRLREMRTAIEDWIRETLPQPL
Ga0335080_101166264	3300032828	Soil	AKLQALVHSLPEPRKLELIEGADHFFDGHLREMREAVEKWVKGVL
Ga0335070_101270234	3300032829	Soil	GMVDALPEPRKLVIIEGADHFFEGRLRELREAIENWIKQTVLRRADS
Ga0335075_116683762	3300032896	Soil	PKKLVIIEGADHFFEGRLHELREAIEKWIRETLSR
Ga0370483_0249051_478_603	3300034124	Untreated Peat Soil	LAEALPEPKKLVIIEGGDHFFEGRLQAMREAIETWVSETLR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079124

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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