Metagenome / Metatranscriptome Family F079178

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F079178
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	51 residues
Representative Sequence	MTITPNTSQRDLVRLAVLMCGDRPGAKYSRPVKGTQNARNADPTRGFSR
Number of Associated Samples	94
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	50.86 %
% of genes near scaffold ends (potentially truncated)	24.14 %
% of genes from short scaffolds (< 2000 bps)	95.69 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.069 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.828 % of family members)
Environment Ontology (ENVO)	Unclassified (31.897 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.862 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.58% β-sheet: 0.00% Coil/Unstructured: 84.42%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF02469	Fasciclin	27.59
PF08530	PepX_C	4.31
PF05653	Mg_trans_NIPA	3.45
PF06974	WS_DGAT_C	2.59
PF13411	MerR_1	2.59
PF06114	Peptidase_M78	2.59
PF13538	UvrD_C_2	1.72
PF00072	Response_reg	0.86
PF00582	Usp	0.86
PF04070	DUF378	0.86
PF00400	WD40	0.86
PF00571	CBS	0.86
PF07859	Abhydrolase_3	0.86
PF13604	AAA_30	0.86
PF13360	PQQ_2	0.86
PF00005	ABC_tran	0.86
PF00289	Biotin_carb_N	0.86
PF13361	UvrD_C	0.86
PF01904	DUF72	0.86
PF14534	DUF4440	0.86
PF09348	DUF1990	0.86
PF11139	SfLAP	0.86
PF13649	Methyltransf_25	0.86
PF02786	CPSase_L_D2	0.86
PF01266	DAO	0.86
PF10604	Polyketide_cyc2	0.86
PF00015	MCPsignal	0.86
PF06772	LtrA	0.86
PF12833	HTH_18	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	General function prediction only [R]	27.59
COG2936	Predicted acyl esterase	General function prediction only [R]	4.31
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.72
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	0.86
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.86
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.86
COG2155	Uncharacterized membrane protein YuzA, DUF378 family	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.07 %
Unclassified	root	N/A	37.93 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.83 %
Unclassified	root	N/A	37.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.66 %
Unclassified	root	N/A	37.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	21.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.90 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.59 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	17.24 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.03 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	2.59 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.86 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	8.62 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.03 %
Baekduiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae	2.59 %
Capillimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae	2.59 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.86 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.86 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.86 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	8.62 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.03 %
Baekduia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia	2.59 %
Capillimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium	2.59 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.86 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.86 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.86 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.03 %
Baekduia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	2.59 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	2.59 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.72 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.86 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.86 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	0.86 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.86 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.86 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.03 %
Baekduia soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	2.59 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	2.59 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.72 %
Solirubrobacter sp. CPCC 204708	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	0.86 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.86 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	0.86 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.86 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.86 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2422740	Not Available	681	Open in IMG/M
3300000787\|JGI11643J11755_10862980	Not Available	624	Open in IMG/M
3300002568\|C688J35102_117993537	Not Available	521	Open in IMG/M
3300002568\|C688J35102_118382284	Not Available	554	Open in IMG/M
3300002568\|C688J35102_120936507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	2586	Open in IMG/M
3300003320\|rootH2_10045304	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300003998\|Ga0055472_10119943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	756	Open in IMG/M
3300004081\|Ga0063454_100028833	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300004153\|Ga0063455_100996916	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005329\|Ga0070683_101535474	All Organisms → cellular organisms → Bacteria → Terrabacteria group	640	Open in IMG/M
3300005337\|Ga0070682_101231176	Not Available	633	Open in IMG/M
3300005440\|Ga0070705_101294354	Not Available	604	Open in IMG/M
3300005544\|Ga0070686_101057933	Not Available	668	Open in IMG/M
3300005547\|Ga0070693_100679308	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005578\|Ga0068854_100627889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	920	Open in IMG/M
3300005614\|Ga0068856_100649743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1075	Open in IMG/M
3300005616\|Ga0068852_101533071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	689	Open in IMG/M
3300005719\|Ga0068861_100910123	Not Available	834	Open in IMG/M
3300005937\|Ga0081455_10123185	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300005981\|Ga0081538_10071165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1915	Open in IMG/M
3300006046\|Ga0066652_100474853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1156	Open in IMG/M
3300006058\|Ga0075432_10248426	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300006169\|Ga0082029_1518466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	839	Open in IMG/M
3300006755\|Ga0079222_11863099	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300006806\|Ga0079220_11632485	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300006844\|Ga0075428_100107240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	3045	Open in IMG/M
3300006847\|Ga0075431_100624127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1060	Open in IMG/M
3300006871\|Ga0075434_100766920	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300006914\|Ga0075436_101512447	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300009094\|Ga0111539_10309405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1839	Open in IMG/M
3300009098\|Ga0105245_13092575	Not Available	516	Open in IMG/M
3300009147\|Ga0114129_11588658	Not Available	801	Open in IMG/M
3300009157\|Ga0105092_10754094	Not Available	568	Open in IMG/M
3300009162\|Ga0075423_10772722	Not Available	1016	Open in IMG/M
3300009789\|Ga0126307_11455435	Not Available	555	Open in IMG/M
3300009840\|Ga0126313_10392000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1101	Open in IMG/M
3300010038\|Ga0126315_10283595	Not Available	1018	Open in IMG/M
3300010038\|Ga0126315_10324781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	954	Open in IMG/M
3300010041\|Ga0126312_11433530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	512	Open in IMG/M
3300010042\|Ga0126314_10305604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1136	Open in IMG/M
3300010042\|Ga0126314_10972136	All Organisms → cellular organisms → Bacteria → Terrabacteria group	629	Open in IMG/M
3300010044\|Ga0126310_11651727	Not Available	530	Open in IMG/M
3300010045\|Ga0126311_10152363	Not Available	1648	Open in IMG/M
3300010045\|Ga0126311_10317996	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300010373\|Ga0134128_11844768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	665	Open in IMG/M
3300010400\|Ga0134122_10523875	Not Available	1078	Open in IMG/M
3300010401\|Ga0134121_12321944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	576	Open in IMG/M
3300010403\|Ga0134123_11881330	Not Available	654	Open in IMG/M
3300011119\|Ga0105246_12158248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	541	Open in IMG/M
3300012212\|Ga0150985_102783442	Not Available	995	Open in IMG/M
3300012469\|Ga0150984_117026508	Not Available	520	Open in IMG/M
3300012937\|Ga0162653_100016219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	960	Open in IMG/M
3300012961\|Ga0164302_11045714	Not Available	640	Open in IMG/M
3300013308\|Ga0157375_12116262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	670	Open in IMG/M
3300014325\|Ga0163163_12556983	Not Available	568	Open in IMG/M
3300014326\|Ga0157380_13024663	Not Available	536	Open in IMG/M
3300015371\|Ga0132258_12823418	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1209	Open in IMG/M
3300015371\|Ga0132258_13691609	Not Available	1045	Open in IMG/M
3300015372\|Ga0132256_101346259	Not Available	826	Open in IMG/M
3300015373\|Ga0132257_102693163	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300015374\|Ga0132255_103545171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	664	Open in IMG/M
3300017792\|Ga0163161_11519432	Not Available	588	Open in IMG/M
3300018422\|Ga0190265_10029640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	4523	Open in IMG/M
3300018422\|Ga0190265_10297124	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300018422\|Ga0190265_10355434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	1553	Open in IMG/M
3300018422\|Ga0190265_11145338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300018429\|Ga0190272_12906786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300018432\|Ga0190275_11668817	Not Available	715	Open in IMG/M
3300018432\|Ga0190275_13239717	Not Available	527	Open in IMG/M
3300018466\|Ga0190268_12078359	Not Available	526	Open in IMG/M
3300018469\|Ga0190270_10716181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	995	Open in IMG/M
3300018469\|Ga0190270_10741694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	980	Open in IMG/M
3300018469\|Ga0190270_10774733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	962	Open in IMG/M
3300018469\|Ga0190270_12644890	Not Available	564	Open in IMG/M
3300018469\|Ga0190270_13278200	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300022756\|Ga0222622_10389140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	979	Open in IMG/M
3300025899\|Ga0207642_10467972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	766	Open in IMG/M
3300025908\|Ga0207643_10665736	Not Available	672	Open in IMG/M
3300025917\|Ga0207660_10369329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1152	Open in IMG/M
3300025919\|Ga0207657_10679761	Not Available	800	Open in IMG/M
3300025921\|Ga0207652_10814518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	829	Open in IMG/M
3300025933\|Ga0207706_11385798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300025937\|Ga0207669_11397898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	596	Open in IMG/M
3300025981\|Ga0207640_11997354	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300026067\|Ga0207678_10206895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1678	Open in IMG/M
3300026067\|Ga0207678_11741389	Not Available	547	Open in IMG/M
3300026089\|Ga0207648_10456232	Not Available	1164	Open in IMG/M
3300027647\|Ga0214468_1092977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300027880\|Ga0209481_10704601	All Organisms → cellular organisms → Bacteria → Terrabacteria group	524	Open in IMG/M
3300027907\|Ga0207428_10334965	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1115	Open in IMG/M
3300027909\|Ga0209382_10714216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1077	Open in IMG/M
3300028705\|Ga0307276_10127853	Not Available	633	Open in IMG/M
3300028722\|Ga0307319_10069423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1115	Open in IMG/M
3300028722\|Ga0307319_10261767	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Baekduiaceae → Baekduia → Baekduia soli	570	Open in IMG/M
3300028744\|Ga0307318_10375316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	502	Open in IMG/M
3300028819\|Ga0307296_10532566	Not Available	643	Open in IMG/M
3300028824\|Ga0307310_10746558	Not Available	504	Open in IMG/M
3300030006\|Ga0299907_11205303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300030785\|Ga0102757_11263148	Not Available	620	Open in IMG/M
3300031548\|Ga0307408_100344363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1263	Open in IMG/M
3300031731\|Ga0307405_11449390	Not Available	602	Open in IMG/M
3300031824\|Ga0307413_10505845	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300031824\|Ga0307413_10795354	Not Available	794	Open in IMG/M
3300031824\|Ga0307413_11053157	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300031901\|Ga0307406_10072302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2264	Open in IMG/M
3300031901\|Ga0307406_10120720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1822	Open in IMG/M
3300031903\|Ga0307407_10150844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1510	Open in IMG/M
3300031938\|Ga0308175_100857967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	997	Open in IMG/M
3300031996\|Ga0308176_10572007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1158	Open in IMG/M
3300032002\|Ga0307416_100756204	Not Available	1065	Open in IMG/M
3300032002\|Ga0307416_102647598	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300032004\|Ga0307414_11295060	Not Available	676	Open in IMG/M
3300032004\|Ga0307414_12310878	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
3300032080\|Ga0326721_10373724	Not Available	818	Open in IMG/M
3300032080\|Ga0326721_10989008	Not Available	537	Open in IMG/M
3300032126\|Ga0307415_102030415	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.31%
Host-Associated	Host-Associated	45.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.72%
Plants	Host-Associated → Plants	45.69%
Aquatic	Environmental → Aquatic	2.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.17%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.93%
Roots	Host-Associated → Plants → Roots	1.72%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Marine	Environmental → Aquatic → Marine	0.86%
Sediment	Environmental → Aquatic → Sediment	0.86%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.86%
Rhizome	Host-Associated → Plants → Rhizome	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.14%
Loam	Environmental → Terrestrial → Soil → Loam	10.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.31%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.03%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.86%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	11.21%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.48%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.31%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.45%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.45%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.86%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.86%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003320	Sugarcane root Sample H2	Host-Associated	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_24227402	3300000033	Soil	MAAQTSNREACSMSLPPNTQQRDLVRLAVLVCGDRPGAKHRAPAKGVHNSSNVDPSRGYAR*
JGI11643J11755_108629802	3300000787	Soil	MSITPNISQRELVRLAVLMCGDRSGAKSSKPVKGVHDSRNADPTRGFLR*
C688J35102_1179935372	3300002568	Soil	MTITANTSQRDLVRLALLKCGDRPGAKYSKPVKGTHSSRNDDPTRGYAR*
C688J35102_1183822841	3300002568	Soil	MTMQPNMKQRDLVRLAVLMCGDRPGAKYTRPAKGNHARSADPARGFHR*
C688J35102_1209365072	3300002568	Soil	MTIKPNTSQRDLVRLAVLMCGDRPGAKYSKPVKGTQNARNADPSRGFSR*
rootH2_100453042	3300003320	Sugarcane Root And Bulk Soil	MVRSAPRGDAPTMTIKANTTQRDLVRLAVLMCGDRPGEKYRRPGKGAHNSSNPDPTRGFDRH*
Ga0055472_101199431	3300003998	Natural And Restored Wetlands	MVRETPWRDAWAMTIKSNMKQRDLVRLAVLMCGDRPGAKYSRPSKGTQSSNNLDPSRGYFR*
Ga0063454_1000288333	3300004081	Soil	MTMQPNPTQRDLVRLAVLVCGDRPGAKYSAPGKGVHNSGNVDPTRGYDR*
Ga0063455_1009969162	3300004153	Soil	MTITPNTTQRDLVRLALLMCGERPSEKYRRPAKGFQNSANADPSRGYAL*
Ga0070683_1015354741	3300005329	Corn Rhizosphere	MTIQPNTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGFSR*
Ga0070682_1012311761	3300005337	Corn Rhizosphere	NTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGFSR*
Ga0070705_1012943541	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	ASSMTIQPNTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGFSR*
Ga0070686_1010579331	3300005544	Switchgrass Rhizosphere	MTITANTSQRDLVRLALLTCGDRPGAKYSKPVKGTQNSRNADPTRGFSR*
Ga0070693_1006793082	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTMKPNMKQRDLVRLAVLMCGDRPGAKYNPPAKGNHARSADPTRGFDR*
Ga0068854_1006278893	3300005578	Corn Rhizosphere	MTIKANTTQRDLVRLAVLMCGDRPGEKYRRPGKGTHNASNPDPTRGYDRH*
Ga0068856_1006497431	3300005614	Corn Rhizosphere	MTIQPNTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGF
Ga0068852_1015330712	3300005616	Corn Rhizosphere	MTIQPNTSQRDLVRLALLMCGERPGEKYSKPVKGTQNSRNADPTRGFSR*
Ga0068861_1009101232	3300005719	Switchgrass Rhizosphere	TANTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGFSR*
Ga0081455_101231851	3300005937	Tabebuia Heterophylla Rhizosphere	MTIKANTTQRDLVRLAVLMCGDRPGEKYRRPGKGTHNASNPDPTRGFDR*
Ga0081538_100711653	3300005981	Tabebuia Heterophylla Rhizosphere	MSIKPNMTQRDLVRLAVLVCGDRPGEKYRKPGKGGQNARNLDPTRGFDR*
Ga0066652_1004748531	3300006046	Soil	MTMKPNMKQRDLVRLAVLMCGDRPSAKYEPPAKGGHSASKHDP
Ga0075432_102484261	3300006058	Populus Rhizosphere	MVRNAPSDDASAMSIKPNMTQRDLVRLAVLVCGDRPGAKYTRPGKGAQNSSNLDPSRGFAR*
Ga0082029_15184662	3300006169	Termite Nest	MVRAASPDDAAAMSIKPNMTQRDLVRLAVLVCGDRSGEKYRRPGKGAHNSSNPDPTRGYDR*
Ga0079222_118630992	3300006755	Agricultural Soil	ASAMTMQPNMKQRDLVRLAVLMCGDRPGAKYVRPAKGGHGASRPDSTLRHYR*
Ga0079220_116324852	3300006806	Agricultural Soil	MTMKPNMKQRDLVRLAVLMCGDRPGAKYVRPAKGGHSARQSDPTLRYHR*
Ga0075428_1001072405	3300006844	Populus Rhizosphere	MSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAQNSSNLDPTRGFNR*
Ga0075431_1006241273	3300006847	Populus Rhizosphere	MSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNASNPDPTRGFDR*
Ga0075434_1007669202	3300006871	Populus Rhizosphere	MTMKPNMKQRDLVRLAVLMCGDRPGAKYSRPAKGTQNSSNLDPSRGYFR*
Ga0075436_1015124472	3300006914	Populus Rhizosphere	TMKPNMKQRDLVRLAVLMCGDRPGAKYVRPAKGGHGASRPDSTLRHYR*
Ga0111539_103094053	3300009094	Populus Rhizosphere	MARRPLRGQDCTMTIQAHMKQRDLVRLAVLMCGDRPGAKYTRPSKGVHDSRNLSPASGFLR*
Ga0105245_130925752	3300009098	Miscanthus Rhizosphere	VRLAVLMCGDRPGAKYSRPAKGTHNSSNLDPSRGYLR*
Ga0114129_115886582	3300009147	Populus Rhizosphere	MSIKPNMTQRDMVRLALLVCGDRPSEKYRRPGKGAHNASNPDPTRGFDR*
Ga0105092_107540942	3300009157	Freshwater Sediment	MTITPNTSQRDLVRLALLMCGDRPGAKYSKPVKAVHGSRNADPTRGYSR*
Ga0075423_107727221	3300009162	Populus Rhizosphere	MTISPNTSQRDLVRLALLTCGDRPGAKYSKPAKGVQDSRNENPIRGYSR*
Ga0126307_114554351	3300009789	Serpentine Soil	LVRLAVLMCGDRPGEKHRAPAKGAHNSSNPEPTHGFSR*
Ga0126313_103920004	3300009840	Serpentine Soil	MTITPNTSQRDLVRLALLACGDRPGAKYSKPVKGTQNAHNDDPTRGFSR*
Ga0126315_102835953	3300010038	Serpentine Soil	MTMKPNMTQRDLVQLAVLMCGDRPGEKYRPPGKGAHNSSNPDPTRGFDR*
Ga0126315_103247812	3300010038	Serpentine Soil	MTIKPNMTQRDLVQLAVLVCGDRPGAKYTRPAKGTHNSTNVDPLRGFSR*
Ga0126312_114335302	3300010041	Serpentine Soil	MTMQPNMKQRDLVRLAVLMCGDRPGAKYVRPAKGGHGARKHDPTLRYHR*
Ga0126314_103056044	3300010042	Serpentine Soil	MVRYPSSDDAAAMTITPDTTQRDLVRLAVLVCGDRPGEKYRPPGKGAHNSSNPDPTRGFDR*
Ga0126314_109721362	3300010042	Serpentine Soil	MTIKPNMTQRDLVQLAVLVCGDRPGAKYTRPAKGTHNSTNVDPLRGF
Ga0126310_116517271	3300010044	Serpentine Soil	MTIKPNMTQRDLVQLAVLVCGDRPGAKYTRPAKGTHNSTNVVPLRGFSR*
Ga0126311_101523633	3300010045	Serpentine Soil	MTITPNTSQRDLVRLALLTCGDRPGAKYSKPVKGTQNAHNDDPTRGFSR*
Ga0126311_103179962	3300010045	Serpentine Soil	MTMKSNMTQRDLVQLAVLMCGDRPGEKYRPPGKGAHNSSNPDPTRGFDR*
Ga0134128_118447681	3300010373	Terrestrial Soil	MTMQPDMKQRDLVRLAVLMCGDRPGAKYVRPAKGGHGASQSDPTLRHYR*
Ga0134122_105238752	3300010400	Terrestrial Soil	MTMKPNMKQRDLVRLAVLMCGDRPGAKYNPPAKGNHARSTEPTRGFDR*
Ga0134121_123219441	3300010401	Terrestrial Soil	MTIKPNTSQRDLVRLAVLMCGDRPGAKYSKPVKGVHDSRNTDPTRGYAR*
Ga0134123_118813302	3300010403	Terrestrial Soil	MTMKPNMKQRDLVRLAVLMCGDRPGAKYTPPAKGNHARSGDTTRGFDR*
Ga0105246_121582481	3300011119	Miscanthus Rhizosphere	SQRDLVRLALLVCGDRPGAKYSKPVKGPQNSRNDDPTRGFAR*
Ga0150985_1027834422	3300012212	Avena Fatua Rhizosphere	MTITPNTSQRDLVRLAVLVCGDRPGAKYSKPVKEMHDSRNPHLTRGFSR*
Ga0150984_1170265081	3300012469	Avena Fatua Rhizosphere	SQRDLVRLAVLMCGDRPGAKYSRPAKGTHSARNEDPTRGFSR*
Ga0162653_1000162192	3300012937	Soil	MTMQPNMKQRDLVRLAVLMCGDRPGAKFSKPVKGLHDSRNADPTRGFSR*
Ga0164302_110457141	3300012961	Soil	MTIQPNTSQRDLVRLALLMCGDRSGAKYSKPVKGTHNARNEDPTRGFTR*
Ga0157375_121162622	3300013308	Miscanthus Rhizosphere	MTIKANMKQRDLVRLAVLMCGDRPGAKYSRPAKGTHNSSNLDPSRGYLR*
Ga0163163_125569832	3300014325	Switchgrass Rhizosphere	MTIKPNTSQRDLVRLAVLMCGDRPGAKYSRPVKGTQSARNEDPSRGFSR*
Ga0157380_130246631	3300014326	Switchgrass Rhizosphere	MSIKPNMTQRDLVQLAVLVCGDRPGEKYRRPGKGAHNVSNPDPTRGFDR*
Ga0132258_128234182	3300015371	Arabidopsis Rhizosphere	TMKPNMKQRDLVRLAVLMCGDRPGAKYTRPGKGVHDSRNLNPASGFNR*
Ga0132258_136916091	3300015371	Arabidopsis Rhizosphere	MLPGMTITPNTSQRDLVRLAVLVCGDRSSAKYSKPVKGVQDSRNPDPTRGFSR*
Ga0132256_1013462592	3300015372	Arabidopsis Rhizosphere	QPNPSQRDLVRLALLMCGDRPGAKYSKPVKGVHSSRNADPTRGFSR*
Ga0132257_1026931631	3300015373	Arabidopsis Rhizosphere	MVRHAPPGEDSTMTLKPNMTQRDMVRLAVLVCGDRSGAKYSRPVKGVQNSANVDPTRGFDR*
Ga0132255_1035451712	3300015374	Arabidopsis Rhizosphere	MVRHAPPGEDSTMTLKPNMTQRDMVRLAVLVCGDRSGAKYSRPVKGVQSAANVDPTRGFSR*
Ga0163161_115194322	3300017792	Switchgrass Rhizosphere	MTIQPNTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGFSR
Ga0190265_100296402	3300018422	Soil	MSLPPNTQQRDLVRLAVLLNGDRTGEKYRSPAKGTHNSSNADPSRGYAR
Ga0190265_102971242	3300018422	Soil	MSLPPNPSQRDLVRLAVLLCGDRPGEKYRSPAKGTHNSSNADPSRGYLR
Ga0190265_103554342	3300018422	Soil	MAGRASNLDASTMSLPPNPSQRDLVRLAVLLCGDRPGEKYRSPAKGTHNSSNADPSRGYL
Ga0190265_111453382	3300018422	Soil	MSLPPNTQQRDLVRLAVLLCGDRPSEKYRSPAKGAHNSSNADPSRGYAR
Ga0190272_129067861	3300018429	Soil	MTITANTSQRDLVQLALLMCGDRPGAKYSKPVKGVHSSRNADPTRGFSR
Ga0190275_116688172	3300018432	Soil	VVANASHRDAPGMTITPNTSQRDLVRLALLMCGDRPGAKYAKPVKGVQDSRNIAPTRGYS
Ga0190275_132397172	3300018432	Soil	MTRGIPMVRSTPSDDASAMSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFDR
Ga0190268_120783591	3300018466	Soil	MVRRAPSDDAAAMSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFD
Ga0190270_107161813	3300018469	Soil	MPIKPNMTQRDLVKLAVLMCGDRPGEKYSRPGKGAQNSSNPDP
Ga0190270_107416942	3300018469	Soil	MAAQPSNREACSMSLPPNTQQRDLVRLAVLVCGDRPGAKHRAPAKGVHNSSNVDPSRGYA
Ga0190270_107747331	3300018469	Soil	MTITPNTSQRDLVRLALLMCGDRPGAKYAKPVKGVQNSRNVAPTRGYTR
Ga0190270_126448902	3300018469	Soil	MLRSMTITPNTSQRDLVRLALLMCGDRPGAKYSKPVKGVHDSRNVAPTRGYSR
Ga0190270_132782001	3300018469	Soil	NLDASTMSLPPNPSQRDLVRLAVLLCGDRPGEKYRSPAKGAHNSSNADPSRGYLR
Ga0222622_103891402	3300022756	Groundwater Sediment	MTITPNTSQRDLVRLAVLMCGDRPGAKYSKPVKGTHNARNEDPTRGFSR
Ga0207642_104679723	3300025899	Miscanthus Rhizosphere	PGTACRDAPSMTIKPNTSQRDLVRLAVLMCGDRPGAKYSRPVKGTQSARNEDPSRGFSR
Ga0207643_106657362	3300025908	Miscanthus Rhizosphere	MTIKANTTQRDLVRLAVLMCGDRPGEKYRRPGKGTHNASNPDPTRGYDRH
Ga0207660_103693294	3300025917	Corn Rhizosphere	VRLAVLMCGDRPGAKYTPPAKGNHARSGDTTRGFDR
Ga0207657_106797612	3300025919	Corn Rhizosphere	MTIQPHTSQRNLVRLALLMCGDRPGAKYTPPAKGNHARSGDTTRGFDR
Ga0207652_108145182	3300025921	Corn Rhizosphere	MTMQPDMKQRDLVRLAVLMCGDRPGAKYVRPAKGGHGASQSDPTLRHYR
Ga0207706_113857982	3300025933	Corn Rhizosphere	MTIQPNTSQPDLVRLALLMCGDRPGEKYSKPVKGTQNSRNADPTRGFSR
Ga0207669_113978982	3300025937	Miscanthus Rhizosphere	MTIKANMKQRDLVRLAVLMCGDRPGAKYSRPAKGTHNSSNLDPSRG
Ga0207640_119973542	3300025981	Corn Rhizosphere	MTIKANMKQRDLVRLAVLMCGDRPGAKYTPPAKGNHARSGDTTRGFDR
Ga0207678_102068951	3300026067	Corn Rhizosphere	MTIKPNTSQRDLVRLAVLMCGDRPGAKYSRPVKGTQSARNEDPSRGFSR
Ga0207678_117413892	3300026067	Corn Rhizosphere	MTIKPDMKQRDLVRLAVLMCGDRPGAKYNPPAKGNHARSTEPTRGFDR
Ga0207648_104562322	3300026089	Miscanthus Rhizosphere	MTIQPNTSQRDLVRLALLMCGDRPGEKYSKPVKGTQNARNTDRTRGFSR
Ga0214468_10929771	3300027647	Soil	ACSMSLPPNTQQRDLVRLAVLLCGDRPSEKYRSPAKGAHNSSNADPSRGYAR
Ga0209481_107046011	3300027880	Populus Rhizosphere	DLVRLAVLMCGDRPGAKYTRPEKGVHDSRNLSPASGFLR
Ga0207428_103349651	3300027907	Populus Rhizosphere	MTIQAHMKQRDLVRLAVLMCGDRPGAKYTRPSKGVHDSRNLSPASGFLR
Ga0209382_107142163	3300027909	Populus Rhizosphere	MSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAQNSSNLDPTRGFNR
Ga0307276_101278531	3300028705	Soil	MTIQPNIQQRDLVRLALLMCGERPGEKYRPPTKGSASSRTAEPWRGYAR
Ga0307319_100694232	3300028722	Soil	MARRPLGGQACTMTMQPNMKQRDLVRLAVLMCGDRSGAKFSKPVKGLHDSRNADPTRGFS
Ga0307319_102617672	3300028722	Soil	MTIKPNTTQRDLVRMAVLLNGDRPGAKYSRPSKGHSSRNTDPTRGFSR
Ga0307318_103753162	3300028744	Soil	MARRPLPGQACSMTIKPNTTQRDLVRMAVLLNGDRPGAKYSKPSKGHSSRNTDPTRGFSR
Ga0307296_105325661	3300028819	Soil	DALSMTITPNTSQRDLVRLALLMCGDRPGAKYSKPVKGTHNARNEDPTRGFSR
Ga0307310_107465581	3300028824	Soil	MTITPNTSQRDLVRLAVLMCGDRPGAKYSRPVKGTQNARNADPTRGFSR
Ga0299907_112053032	3300030006	Soil	TQQRDLVRLAVLLCGDRPSEKYRSPAKGAHNSSNADPSRGYAR
Ga0102757_112631482	3300030785	Soil	MTIQPNIQQRDLVRLALLVCGERPSEKYRFPGKGAHNSSNPDPSRGYAR
Ga0307408_1003443631	3300031548	Rhizosphere	MPMKPNMTQRDLVRLAVLVCGDRPGEKYRRPGKGSQDTSNPDPTRGFDR
Ga0307405_114493902	3300031731	Rhizosphere	MTMKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFDR
Ga0307413_105058452	3300031824	Rhizosphere	MSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFDR
Ga0307413_107953541	3300031824	Rhizosphere	MPMKPNMTQRDLVRLAVLVCGDRSGEKYRRPGKGSQNTSNPDPTRGYDR
Ga0307413_110531573	3300031824	Rhizosphere	MVGKPPPDDASAMSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAQNSSNLDPTRGFA
Ga0307406_100723023	3300031901	Rhizosphere	MVGKPPPDDASAMSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAQNTSNPDPTRGFD
Ga0307406_101207203	3300031901	Rhizosphere	MTIKPNTTQRDLVRLAVLLNGDRPGAKYSRPAKGVQSSANVDPTRGFDR
Ga0307407_101508443	3300031903	Rhizosphere	MSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAQNTSNPDPTRGFDR
Ga0308175_1008579673	3300031938	Soil	MTIQPNTTQRDLVRLALLVCGDRPSEKYRAPGKGTNDTRNPDPTRGYDR
Ga0308176_105720071	3300031996	Soil	MDRRARPREALTMTIQPNTTQRDLVRLALLVCGDRPSEKYRTPGKGTNDTRNP
Ga0307416_1007562042	3300032002	Rhizosphere	MVGKPPPDDASAMSIKPNMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFD
Ga0307416_1026475981	3300032002	Rhizosphere	PPWRDPAGMTITANTSQRDLVRLALLTCGDRPAAKYSKPVKGVQDSRNEDPTRGYSR
Ga0307414_112950602	3300032004	Rhizosphere	MTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFDR
Ga0307414_123108782	3300032004	Rhizosphere	MKQRDLVRLAVLMCGDRPGAKYSRPGKGVHDTRNSDPARGFLR
Ga0326721_103737242	3300032080	Soil	MPMQPNMTQRDLVKLALLVCGDRPGEKYRRPGKGSQNVSNPDPTRGFDR
Ga0326721_109890082	3300032080	Soil	MVRNAPSDDASAMTIKANMTQRDLVQLAVLMCGDRPGEKYRRPGKGAHNSSDPDPTRGFD
Ga0307415_1020304152	3300032126	Rhizosphere	MVRAAPPGDASAMTMKPNMTQREMVRLAVLMCSDRPGEKFRRPSKGGHDSSNADPSRGFD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079178

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences