Metagenome / Metatranscriptome Family F079254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079254
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	75 residues
Representative Sequence	MLQVDPWRKAAECDRAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH
Number of Associated Samples	76
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.62 %
% of genes near scaffold ends (potentially truncated)	30.17 %
% of genes from short scaffolds (< 2000 bps)	84.48 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.207 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (18.103 % of family members)
Environment Ontology (ENVO)	Unclassified (37.931 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.448 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.82% β-sheet: 0.00% Coil/Unstructured: 41.18%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
a.29.13.1: Bacillus cereus metalloprotein-like	d3d19a1	3d19	0.87697
a.29.13.1: Bacillus cereus metalloprotein-like	d3dbya1	3dby	0.82725
a.29.13.1: Bacillus cereus metalloprotein-like	d3d19a2	3d19	0.82667
a.29.13.1: Bacillus cereus metalloprotein-like	d3dbya2	3dby	0.81312
a.25.1.2: Ribonucleotide reductase-like	d3n37a_	3n37	0.80168

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13467	RHH_4	42.24
PF08546	ApbA_C	4.31
PF13770	DUF4169	1.72
PF02738	MoCoBD_1	1.72
PF13365	Trypsin_2	1.72
PF13561	adh_short_C2	0.86
PF01979	Amidohydro_1	0.86
PF13474	SnoaL_3	0.86
PF01050	MannoseP_isomer	0.86
PF02423	OCD_Mu_crystall	0.86
PF03992	ABM	0.86
PF00563	EAL	0.86
PF02777	Sod_Fe_C	0.86
PF00248	Aldo_ket_red	0.86
PF01261	AP_endonuc_2	0.86
PF12704	MacB_PCD	0.86
PF12697	Abhydrolase_6	0.86
PF09351	DUF1993	0.86
PF00724	Oxidored_FMN	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	4.31
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.86
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.86
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.86
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.86
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.86
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.86
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.86
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.21 %
Unclassified	root	N/A	38.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.21 %
Unclassified	root	N/A	38.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.21 %
Unclassified	root	N/A	38.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.34 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.31 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.31 %
Pelagibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.31 %
Pelagibacterium lacus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium → Pelagibacterium lacus	0.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig62005	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100624751	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300000732\|JGI12023J11887_1006591	Not Available	666	Open in IMG/M
3300001661\|JGI12053J15887_10117878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1422	Open in IMG/M
3300001661\|JGI12053J15887_10264585	Not Available	850	Open in IMG/M
3300004114\|Ga0062593_102110489	Not Available	629	Open in IMG/M
3300004633\|Ga0066395_10130037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1253	Open in IMG/M
3300004633\|Ga0066395_10627212	Not Available	632	Open in IMG/M
3300004643\|Ga0062591_101407290	Not Available	692	Open in IMG/M
3300005332\|Ga0066388_100004378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9524	Open in IMG/M
3300005332\|Ga0066388_100004923	All Organisms → cellular organisms → Bacteria	9179	Open in IMG/M
3300005332\|Ga0066388_100265876	Not Available	2356	Open in IMG/M
3300005332\|Ga0066388_100858150	Not Available	1492	Open in IMG/M
3300005332\|Ga0066388_102444746	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300005363\|Ga0008090_10090084	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300005363\|Ga0008090_14354111	All Organisms → cellular organisms → Bacteria → Proteobacteria	603	Open in IMG/M
3300005363\|Ga0008090_15355131	Not Available	795	Open in IMG/M
3300005434\|Ga0070709_10616782	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005434\|Ga0070709_11207205	Not Available	608	Open in IMG/M
3300005435\|Ga0070714_101603220	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005436\|Ga0070713_100246096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1629	Open in IMG/M
3300005436\|Ga0070713_102392317	Not Available	511	Open in IMG/M
3300005439\|Ga0070711_101974115	Not Available	513	Open in IMG/M
3300005533\|Ga0070734_10056111	All Organisms → cellular organisms → Bacteria	2373	Open in IMG/M
3300005533\|Ga0070734_10193240	Not Available	1174	Open in IMG/M
3300005764\|Ga0066903_100559813	All Organisms → cellular organisms → Bacteria	1964	Open in IMG/M
3300005764\|Ga0066903_101167843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Pelagibacterium → Pelagibacterium lacus	1426	Open in IMG/M
3300005764\|Ga0066903_101617998	Not Available	1229	Open in IMG/M
3300005764\|Ga0066903_106881958	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005841\|Ga0068863_102513967	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300006028\|Ga0070717_10322635	Not Available	1376	Open in IMG/M
3300006028\|Ga0070717_10326939	Not Available	1367	Open in IMG/M
3300006163\|Ga0070715_10608104	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300006175\|Ga0070712_101530617	Not Available	583	Open in IMG/M
3300006755\|Ga0079222_10110872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1469	Open in IMG/M
3300006852\|Ga0075433_10222139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1678	Open in IMG/M
3300006854\|Ga0075425_101456096	All Organisms → cellular organisms → Bacteria → Proteobacteria	774	Open in IMG/M
3300006854\|Ga0075425_101492644	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300006854\|Ga0075425_101720249	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300006871\|Ga0075434_100100459	All Organisms → cellular organisms → Bacteria → Proteobacteria	2899	Open in IMG/M
3300006954\|Ga0079219_12490783	Not Available	503	Open in IMG/M
3300007788\|Ga0099795_10229959	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300009143\|Ga0099792_10016833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3188	Open in IMG/M
3300009143\|Ga0099792_10424649	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300009162\|Ga0075423_12283455	Not Available	588	Open in IMG/M
3300009551\|Ga0105238_10430585	Not Available	1315	Open in IMG/M
3300010043\|Ga0126380_10834477	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300010046\|Ga0126384_11912721	Not Available	566	Open in IMG/M
3300010048\|Ga0126373_10770591	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300010359\|Ga0126376_13026645	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300010361\|Ga0126378_11565590	Not Available	748	Open in IMG/M
3300010361\|Ga0126378_13437859	Not Available	502	Open in IMG/M
3300010362\|Ga0126377_11036242	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300010362\|Ga0126377_13195353	Not Available	529	Open in IMG/M
3300010376\|Ga0126381_100029753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6501	Open in IMG/M
3300010376\|Ga0126381_100388430	All Organisms → cellular organisms → Bacteria → Proteobacteria	1941	Open in IMG/M
3300010376\|Ga0126381_103044291	Not Available	665	Open in IMG/M
3300010376\|Ga0126381_103142807	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300010396\|Ga0134126_11172808	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300010398\|Ga0126383_11140795	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300010398\|Ga0126383_11577033	Not Available	746	Open in IMG/M
3300010399\|Ga0134127_12093780	Not Available	644	Open in IMG/M
3300012203\|Ga0137399_10112569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2126	Open in IMG/M
3300012469\|Ga0150984_109055039	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300012925\|Ga0137419_10342847	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300012971\|Ga0126369_12858239	Not Available	565	Open in IMG/M
3300012971\|Ga0126369_13316530	Not Available	527	Open in IMG/M
3300015241\|Ga0137418_10063210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3384	Open in IMG/M
3300015371\|Ga0132258_10776349	All Organisms → cellular organisms → Bacteria	2415	Open in IMG/M
3300015371\|Ga0132258_11370421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1787	Open in IMG/M
3300017993\|Ga0187823_10146263	Not Available	742	Open in IMG/M
3300017999\|Ga0187767_10097477	Not Available	812	Open in IMG/M
3300020199\|Ga0179592_10442495	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300020199\|Ga0179592_10447428	Not Available	559	Open in IMG/M
3300021403\|Ga0210397_10887326	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300021560\|Ga0126371_10000231	All Organisms → cellular organisms → Bacteria	43645	Open in IMG/M
3300021560\|Ga0126371_10005035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11721	Open in IMG/M
3300021560\|Ga0126371_10013006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7552	Open in IMG/M
3300021560\|Ga0126371_12368647	Not Available	642	Open in IMG/M
3300021560\|Ga0126371_12858348	Not Available	585	Open in IMG/M
3300022506\|Ga0242648_1085736	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300025905\|Ga0207685_10164166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1016	Open in IMG/M
3300025905\|Ga0207685_10586798	Not Available	596	Open in IMG/M
3300025915\|Ga0207693_11070176	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300027063\|Ga0207762_1018087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300027388\|Ga0208995_1016490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1267	Open in IMG/M
3300027388\|Ga0208995_1034507	Not Available	888	Open in IMG/M
3300027480\|Ga0208993_1106694	Not Available	512	Open in IMG/M
3300027512\|Ga0209179_1010854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1599	Open in IMG/M
3300027512\|Ga0209179_1031653	All Organisms → cellular organisms → Bacteria → Proteobacteria	1087	Open in IMG/M
3300027516\|Ga0207761_1078808	Not Available	641	Open in IMG/M
3300027669\|Ga0208981_1071146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	887	Open in IMG/M
3300027738\|Ga0208989_10030420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1868	Open in IMG/M
3300027826\|Ga0209060_10017212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3891	Open in IMG/M
3300027903\|Ga0209488_11022048	Not Available	570	Open in IMG/M
3300031057\|Ga0170834_100550935	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300031128\|Ga0170823_12944054	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300031771\|Ga0318546_11275570	Not Available	516	Open in IMG/M
3300031954\|Ga0306926_11396384	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300031954\|Ga0306926_12759500	Not Available	532	Open in IMG/M
3300032076\|Ga0306924_11493182	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300032180\|Ga0307471_101083058	Not Available	967	Open in IMG/M
3300032261\|Ga0306920_103524830	Not Available	578	Open in IMG/M
3300032770\|Ga0335085_10288627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1951	Open in IMG/M
3300032782\|Ga0335082_11180468	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300032783\|Ga0335079_10735268	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300032783\|Ga0335079_11353284	Not Available	709	Open in IMG/M
3300032828\|Ga0335080_10077406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3689	Open in IMG/M
3300032828\|Ga0335080_10472061	All Organisms → cellular organisms → Bacteria → Proteobacteria	1336	Open in IMG/M
3300032892\|Ga0335081_10002927	All Organisms → cellular organisms → Bacteria → Proteobacteria	26832	Open in IMG/M
3300032892\|Ga0335081_10006144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19080	Open in IMG/M
3300032893\|Ga0335069_10643201	All Organisms → cellular organisms → Bacteria → Proteobacteria	1212	Open in IMG/M
3300032893\|Ga0335069_11007816	Not Available	924	Open in IMG/M
3300032897\|Ga0335071_10436192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1263	Open in IMG/M
3300033433\|Ga0326726_10141434	Not Available	2188	Open in IMG/M
3300033433\|Ga0326726_10831555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.66%
Host-Associated	Host-Associated	9.48%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.79%
Plants	Host-Associated → Plants	9.48%
Aquatic	Environmental → Aquatic	0.86%
Modeled	Engineered → Modeled	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Peat	Environmental → Terrestrial → Peat	1.72%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.41%
Loam	Environmental → Terrestrial → Soil → Loam	29.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.03%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.03%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.45%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.45%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.59%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.72%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.86%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000732	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0005.00004550	2166559005	Simulated	MSSFDPWSKAAECDLAIERVADPERRIVLESLRRVWIEVCNSLSLFNEADQADQLSTIDQIHMELMAVCRTAMH
INPhiseqgaiiFebDRAFT_1006247512	3300000364	Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLSVFDDPDQADQLSTIDQIHMELMAVCRTAMH*
JGI12023J11887_10065911	3300000732	Forest Soil	MQTVARWGEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWVALCNELSLLDQEDRVGPLSTINQIHTELMAVCRRAMH*
JGI12053J15887_101178782	3300001661	Forest Soil	MLQVDPWRKAAECDRAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH*
JGI12053J15887_102645852	3300001661	Forest Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRARQLTTITQIHTELMAVCRGAMH*
Ga0062593_1021104891	3300004114	Soil	MNGGRPANVGDVGGAMLHLDPWSKAVECDRAIMLVADPERRIVLESLRSLWIVLCNERSLLDEPDRANELSTIAQIHTELMVAARSAMH*
Ga0066395_101300371	3300004633	Tropical Forest Soil	MVLLDPWSKAAECDQALERVADPERRIVLESLRSLWIALCNSLSPRDEGHQPNHVSAIAQIHTELMATCRAAMH*
Ga0066395_106272121	3300004633	Tropical Forest Soil	MLQIDPQRKLAECDRAIERVADPERRIVLESLRSLWLAMSNALSMLDEPERADQLSTIEQIHSELMAVCRHAMH*
Ga0062591_1014072901	3300004643	Soil	MLHLDPWSKAVECDRAIELVADPERRIVLESLRSLWIELCNERSLLDEPDRGNELSTIAQIHAELMVVARRAMH*
Ga0066388_10000437810	3300005332	Tropical Forest Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALIDQRDQVVPFSAIDQIHMELMAVCRTAMH*
Ga0066388_1000049235	3300005332	Tropical Forest Soil	MSSGVIVLVDPWSKAAECDRAIEQVADPERRMVLQSLRSLWIALCSSLSRPDDHDRTGNLSAIAQIHTELMAVCRSGMH*
Ga0066388_1002658764	3300005332	Tropical Forest Soil	MFSLDPWSKAAECERAIERVADPERRIVLESLLNVWIELCGSLSHCGENGRAHDLSTIEQIHTELMASCRTAMH*
Ga0066388_1008581502	3300005332	Tropical Forest Soil	MLLVDPRGKAAECERAIELVSDPERRVVLESLRSVWIAMCDARPAPDGPCHVSELSTIAQIHTELMANCRRAMH*
Ga0066388_1024447461	3300005332	Tropical Forest Soil	MLQLDPESKAAECGRAIAVVADPECRAVLERLRSLWIALSNEHPLLDDRDAVPLSTIAQIHAQLMAAYRRAMH*
Ga0008090_100900841	3300005363	Tropical Rainforest Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALVDQPGQVDQLSTIDQIHMELMAVCRTAMH*
Ga0008090_143541112	3300005363	Tropical Rainforest Soil	MLLVDPWRKAAECDRAIALVADPERRVVLESLRSLWVALCDPKTAVQAPAHAQQLSTIAQIHSELMVVCRRAMH*
Ga0008090_153551311	3300005363	Tropical Rainforest Soil	MLHIDPRRKAAECDRAIERVADPERRIVLESLRSLWLAMSNALSTLDEPDRVDQLSTIEQIHTELMAMCHRAMH*
Ga0070709_106167822	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLQLDPWSKAAECDRAIQLVADPERRVVLESLRSLWIALSNERSLLEEFDRAHQLSTITQIHTELMAVCRGAMH*
Ga0070709_112072051	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALFDEPDQVDQLSTIHQIHTELMAVCRMAMH*
Ga0070714_1016032202	3300005435	Agricultural Soil	SKAAECDRAIQLVADPERRVVLESLRSLWIALSNERSLLEEFDRAHQLSTITQIHTELMAVCRGAMH*
Ga0070713_1002460962	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLVLDPWSKAAECDRAIERVADPVRRLVLESLRSVWIEVCDSLSLFDESDRAHDLSAIAQIHRELMVACRTAMH*
Ga0070713_1023923171	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLHVDPWSKAAECDRAIELVADPERRIVLESLRNLWIALSNEGSIFDEPDRAHQLSTITQIHTELMAVC
Ga0070711_1019741151	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LDPWSKAAECERAIERVADPERRIVLESLQSVWIEVCDSLLLLDEADRAHDLSAIAQIHTELMASCRAAMH*
Ga0070734_100561113	3300005533	Surface Soil	MSSLDPWSKAAECDLAIERVADPERRIVLESLRRLWIDVCNSFSRFGDPDQAPQLSTISQIHMELMAGCRTAMH*
Ga0070734_101932401	3300005533	Surface Soil	MLQVDLHVDPWGKAAECERAIAAVADPERRVVLTSLRSLWIALGSERSSFDGFQRAGQL
Ga0066903_1005598132	3300005764	Tropical Forest Soil	MFALDPWSKAAECESAIERVADPERRIVLESLLNVWIELCDSLSHCGENDRAHDLSTIEQIHTELMASCRTAMH*
Ga0066903_1011678434	3300005764	Tropical Forest Soil	PWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALVDQPSQVDQLSTIDQIHMELMAVCRTAMH*
Ga0066903_1016179981	3300005764	Tropical Forest Soil	QMWRSMAKRGAIPMLLVDPRGKAAECERAIELVSDPERRVVLESLRSVWIAMCDARPAPDGPCHVSELSTIAQIHTELMANCRRAMH*
Ga0066903_1068819582	3300005764	Tropical Forest Soil	PWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALIDQRDQVVPFSAIDQIHMELMAVCRTAMH*
Ga0068863_1025139671	3300005841	Switchgrass Rhizosphere	GRRAARPVLRSVSRGNTMSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALFDEPDQVDQLSTIHQIHTELMAVCRMAMH*
Ga0070717_103226351	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MVLLDPWSKAAECDQALERVADPERRVVLESLRSLWVALCDSLSLRDARDQPNHLSAIAQIHTELMATCRTAMH*
Ga0070717_103269391	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLVLDPWSKPAECERAIERVADPERRIVLESLQSVWIEVCDSLSLLDEADRAPDLSAIAQIHAELMASCRTAMH*
Ga0070715_106081041	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VVGFGPTNERGWAMQTVARWGEPGRMLQLDPWSKAAECDRAIEFIADPDRRIVLESLRSFWVAMCNELSLLDQEDRVGPLSTINQIHTELMAVCRTAMH*
Ga0070712_1015306171	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALFDEPDQVDQLSTIHQIHTELMAVCRM
Ga0079222_101108723	3300006755	Agricultural Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWLEVCNSLALFDEHDHVDQLSTIHQIHTELMAVCRMAMH*
Ga0075433_102221393	3300006852	Populus Rhizosphere	MPMSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSFALFDEPDQVNQLSIIDQIHIELMAVCRTAMH*
Ga0075425_1014560961	3300006854	Populus Rhizosphere	RGCAMQTVARWAEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWVALCNEQSLLDQEDRVGPLSAINQIHAELMAVCRRAMH*
Ga0075425_1014926441	3300006854	Populus Rhizosphere	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWLEVCNSLALFDEPDQVDQLSTIHQIHTELMAVCRTAMH*
Ga0075425_1017202491	3300006854	Populus Rhizosphere	WSKAVECDHAIERVADPERRVVLESLRSVWIEVCDARSLFNGADQPQDLSIITQIHTELMASYRMAMH*
Ga0075434_1001004593	3300006871	Populus Rhizosphere	MGTGAMLQVDPWTKAAECDRAIELVADPERRIVLESLRSLWIALCNELSLLDEPDRATELSTITQIHTELMAACRRAMH*
Ga0079219_124907831	3300006954	Agricultural Soil	MSSLDPWSRAAECDVAIARVADPERRIVLESLRRVWIEVCNSLALFGEPDQVDQLYTIDQIHMQLMAGCRAAMH*
Ga0099795_102299592	3300007788	Vadose Zone Soil	MGAGAMLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRARQLTTITQIHTELMAVCRGAMH*
Ga0099792_100168334	3300009143	Vadose Zone Soil	MLQVDPWTKAAECDHAIRLVADPERRVVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH*
Ga0099792_104246491	3300009143	Vadose Zone Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH*
Ga0075423_122834551	3300009162	Populus Rhizosphere	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSFALFDEPDQVNQLSIIDQIHIELMAVCRTAMH*
Ga0105238_104305851	3300009551	Corn Rhizosphere	MVLLDPWSKAAECDQALERVADPERRVVLKSLRSLWVALCNSLSPENARDQPNHLSAIAQIHTELMATCRTAM
Ga0126380_108344772	3300010043	Tropical Forest Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALIDQRDQVVPFSAIDQIHVELMAVCRTAMH*
Ga0126384_119127211	3300010046	Tropical Forest Soil	MVLLDPWSKAAECDQALERVADPERRIVLESLRSLWIALCDSLSPRDERYQPNHLSAIAQIHTELMATCRSAMH*
Ga0126373_107705911	3300010048	Tropical Forest Soil	MLQIDPRRKAAECARAIERVADPERRIVLESLRSLWLAMSNALSILDEPDRAGQLSTIEQIHTELMAVCRRAMH*
Ga0126376_130266452	3300010359	Tropical Forest Soil	TNDGFAATWTRVRGSRLMLQLDPESKAAECGRAIAVVADPECRAVFERLRSLWIALSNEHPLLDDRDAVPLSTIAQIHAQLMAAYRRAMH*
Ga0126378_115655901	3300010361	Tropical Forest Soil	MLLVDPRGKAAECERAIELVSDPERRVVLESLRSVWIAMCDARPAPDGPCHVSELSTIAQIHTEVMANCRRAMH*
Ga0126378_134378592	3300010361	Tropical Forest Soil	MLLVDPWRKAAECDRAIALVSDPERREVLESLRSLWVALCDPRSAAQAPGRAHQLSTIAQIHSELMVVCRSAMH*
Ga0126377_110362421	3300010362	Tropical Forest Soil	MVLLDPWSKAAECDQALERVADPERRIVLESLRSLWIALCDSLSPRDERYQANHLSAIAQIHTELMATCRSAMH*
Ga0126377_131953532	3300010362	Tropical Forest Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALFDEPDQVKQLSIIDQIHIELMAVCRTAMH*
Ga0126381_10002975310	3300010376	Tropical Forest Soil	MLQIDPRRKAAECARAIERVADPERRIVLESLRSLWLAMSNALSILDEPDRAGQLSTIEQIHSELMAVCRRAMH*
Ga0126381_1003884302	3300010376	Tropical Forest Soil	MLLVDPWRKAAECDRAIAVVSDPERREVLESLRSLWMALCDPRSAVQAPGRAHQLSTIAQIHSELMVVCRSAMH*
Ga0126381_1030442912	3300010376	Tropical Forest Soil	MLHIDPRRKAAECDRAIERVADPERRIVLESLRSLWLAMGNAISILDEPDRVDQLSTIEQIH
Ga0126381_1031428073	3300010376	Tropical Forest Soil	DPWSKAAECESAIERVADPERRIVLESLLNVWIELCDSISHCGENDRAHDLSTIEQIHTELMASCRTAMH*
Ga0134126_111728081	3300010396	Terrestrial Soil	KAAECDHAIERVADPERRVVLESLRLLWLDICRSISIDRPEQTSYLSAIAQMHTEFMAGCRTAMH*
Ga0126383_111407951	3300010398	Tropical Forest Soil	RDKGITMSSGVIVLVDPWSKAAECDRAIEQVADPERRMVLQSLRSLWIALCNSLSRPDDHDRTGNLSAIAQIHTELMAVCRSGMH*
Ga0126383_115770331	3300010398	Tropical Forest Soil	MLLVDPRGKAAECERAIELVSDPERRVVLESLRSVWIAMCDARPAPDGPCHVSELSTIAQIHMELMANCRRAM
Ga0134127_120937801	3300010399	Terrestrial Soil	MSLDPWSKAAECDHAIERVADPERRVVLESLRLLWLDICRSISIDRPEQTSYLSAIAQMHTEFMAGCRTAMH*
Ga0137399_101125691	3300012203	Vadose Zone Soil	MLQVDPWTKAAECDRAIRLVADPERRVVLESLRSLWIALSNERSLLDEPDRARQLTTITQIHTELMAVCRGAMH*
Ga0150984_1090550392	3300012469	Avena Fatua Rhizosphere	MLQVDPWTRAAECDRAIRLVADPERRIVLEILRSLWIALSNERSILDEPDRARQLTTITQIHTELMAVCRGAMH*
Ga0137419_103428473	3300012925	Vadose Zone Soil	MLQVDPWTKAAECDHAIRLVADPERRVVLESLRSLWIALSNERSLLDEPDRARQLTTITQIHTELMAVCRGAMH*
Ga0126369_128582391	3300012971	Tropical Forest Soil	MAMSSGVIVLVDPWSKAAECDRAIEQVADPERRMVLQSLRSLWIALCNSLSRTEDHDRAGNLSAIAQIHTELMAVCRSGMH*
Ga0126369_133165301	3300012971	Tropical Forest Soil	MFALDPWSKAAECESAIERVADPERRIVLESLLNVWIELCDSLSHCDENDRAHDLSTIEQIHTELM
Ga0137418_100632104	3300015241	Vadose Zone Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRARQLTTITQLHTELMQVCRGAMH*
Ga0132258_107763493	3300015371	Arabidopsis Rhizosphere	MFSLDPWSKAAECELAIERVADPERRIVLESLLNVWIEVCDSLSFVEERPRTHDLSTIEQIHTELMASCRTAMH*
Ga0132258_113704212	3300015371	Arabidopsis Rhizosphere	MSSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIDVCNSLALFDEPDQADQLSTIDQIHMELMAGYRMAMH*
Ga0187823_101462632	3300017993	Freshwater Sediment	MLMVDPWTKAAECERAIELVADPERRIVLQSLRSFWIALCNAISILDEPLRANQLSIIAQIHTEMMAVSRTAMH
Ga0187767_100974771	3300017999	Tropical Peatland	MFLVDPWHKAAECERAIELVSDPERRIVLESLHSLWVALCNPISRCYEADRASQLSTIAQIHTELMAVCRTAMH
Ga0179592_104424952	3300020199	Vadose Zone Soil	RWGEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSLWVALCNERPLLDQEDRVGPLSTINQIHTELMAVCRRAMH
Ga0179592_104474281	3300020199	Vadose Zone Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRARQLTTITQIHTELMAVCRGAMH
Ga0210397_108873262	3300021403	Soil	MMLLDPWSKAAECDQALERVADPERRIVLESLRSLWLALCNSLSLRDERHQANHLSAIAQIHMELMATCRTAMH
Ga0126371_1000023121	3300021560	Tropical Forest Soil	MLMLLDPWSKAAECDRAIERVADPERRVVLERLRLLWLDICKSLLIDHPGQTPHLSAIAQMHTEFMAGCRAAMH
Ga0126371_100050358	3300021560	Tropical Forest Soil	MLQIDPQRKLAECDRAIERVADPERRIVLESLRSLWLAMSNALSMLDEPERADQLSTIEQIHSELMAVCRHAMH
Ga0126371_100130066	3300021560	Tropical Forest Soil	MLLVDPRGKAAECERAIELVSDPERRVVLESLRSVWIAMCDARPAPDGPCHVSELSTIAQIHTELMANCRRAMH
Ga0126371_123686472	3300021560	Tropical Forest Soil	MLLVDPWRKAAECDRAIALVADPERRVVLESLRSLWVALCDPKTAVQAPAHAQQLSTIAQIHSELMVVCRRAMH
Ga0126371_128583481	3300021560	Tropical Forest Soil	MLQIDPRRKAAECDRAIERVADPERRIVLESLRSLWLAMSNALSILDEPDRADQLSTIEQIHSELMAVCRR
Ga0242648_10857362	3300022506	Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH
Ga0207685_101641662	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MQTVARWAEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWVALCNELSLLDQADRVGPLSTINQIHTELMAVCRRAMH
Ga0207685_105867981	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MLHVDPWSKAAECDRAIELVADPERRIVLESLRNLWIALSNEGSIFDEPDRAHQLSTITQIHTELMAVCRGAMH
Ga0207693_110701762	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RGGAMQTVARWAEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWVALCNEQSLLDQEDRVGPLSAINQIHTELMAVCRRAMH
Ga0207762_10180873	3300027063	Tropical Forest Soil	MLLLDPRCKAAECERAIELVADPERRIVLESLRSLWLALSGPIALPYGSGRASQLSTIAQIHTELMADCRTAMH
Ga0208995_10164903	3300027388	Forest Soil	MLQVDPWSKAVECDRAIKLVADPERRVVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH
Ga0208995_10345072	3300027388	Forest Soil	MQTVARWGEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWVALCNELSLLDQEDRVGPLSTINQIHTELMAVCRRAMH
Ga0208993_11066941	3300027480	Forest Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQLH
Ga0209179_10108543	3300027512	Vadose Zone Soil	MLQVDPWTKAAECDHAIRLVADPERRVVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCR
Ga0209179_10316532	3300027512	Vadose Zone Soil	VSVVGFGPTNERGCAMQTVARWGEPGRMLQVDPWSKAAECDRAIEFIADPERRIVLESLRSFWAALCNERSLLDQEDRVGPLSTINQIHTELMAVCRRAMH
Ga0207761_10788081	3300027516	Tropical Forest Soil	MLQIDPRRKAAECDRAIERVADPERRIVLESLRSLWLAMSNALSILDEPDRAGQLSTIEQIHTELMAVCRRAMH
Ga0208981_10711463	3300027669	Forest Soil	MLQVDPWRKAAECDRAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH
Ga0208989_100304201	3300027738	Forest Soil	MLQVDPWRKAAECDHAIKLVADPERRIVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCR
Ga0209060_100172122	3300027826	Surface Soil	MSSLDPWSKAAECDLAIERVADPERRIVLESLRRLWIDVCNSFSRFGDPDQAPQLSTISQIHMELMAGCRTAMH
Ga0209488_110220482	3300027903	Vadose Zone Soil	MLQVDPWTKAAECDHAIRLVADPERRVVLESLRSLWIALSNERSLLDEPDRAHQLTTITQIHTELMAVCRGAMH
Ga0170834_1005509351	3300031057	Forest Soil	IHVDAQRGTDARRGAAMLLVDPRSKAAECDRAIERVADPERRIVLESLRSLWIAMCNPLSLLDEPDASHLSTIAQIHTELMAVCRMAMH
Ga0170823_129440542	3300031128	Forest Soil	LLVDPRSKAAECDRAIERVADPERRIVLESLRSLWIAMCNPLSLLDEPDASHLSTIAQIHTELMAVCRMAMH
Ga0318546_112755701	3300031771	Soil	MVLLDPWSKAAECDQALERVADPERRVVLESLRSLWVALCDSLSLRDGREQPNHLSAIAQ
Ga0306926_113963842	3300031954	Soil	MVLLDPWSKAAECDQALERVADPERRVVLESLRSLWVALCDSLSLRDGREQPNHLSAIAQIHTELMATCRTAMH
Ga0306926_127595001	3300031954	Soil	LLVDPWRKAAECDRAIALVSDPERREVLESLRSLWVALCDPRSAVQAPGRAHQLSTIAQIHSELMVVCRSAMH
Ga0306924_114931822	3300032076	Soil	MLHIDPWSKAAECDRAIELIADPERRVVLERLRSLWIALCNEWSPLDQADRARPLFNIAQIHTELMAVCRTAMH
Ga0307471_1010830582	3300032180	Hardwood Forest Soil	MVLLDPWSKAAECDQALERVADPERRIVLESLRSLWIALCNSLSPRDERHQAPHLSAIAQIHTELMATCRTAMH
Ga0306920_1035248301	3300032261	Soil	MVLLDPWSKAAECDQALERVADPERRVVLESLRSLWVALCDSLSLRDARDQPNHLSAIAQIHTELMATCRTAMH
Ga0335085_102886272	3300032770	Soil	MVLLDPWSKAAECDQALERVADPERRVVLESLRSLWVALCDSLSLRDARNQPNHLSAIAQIHTELMATCRTAMH
Ga0335082_111804682	3300032782	Soil	VNPRCFASTNGRVGVRRDLRRSVRRGNAMLSLDPWSKAAECDVAIARVADPERRIVLESLRRLWIEVCNSLALLDQPDQVDQLSTIDQIHMELMAVCRTAMH
Ga0335079_107352681	3300032783	Soil	MLLVDPWRKAAECDRAIALVSDPERRVVLESLRSLWMAMCDPRSAAQAPGRAQQISTIAQIHSELMVVCRRAMH
Ga0335079_113532841	3300032783	Soil	MVLLDPWSKAAECDQALERVADPERRVVLESLRSLWVALCDSLSLRDARNQPNHLSAIAQIHTELMAT
Ga0335080_100774061	3300032828	Soil	MVLLDPWSKAAECDQALERVADPERRLVLESLRSLWIALCNSLSLRDERQQASHLSTIAQIHTELMATCRAAMH
Ga0335080_104720613	3300032828	Soil	LVLDPRTKAAECERAIERVADPERRIVLERLLCLWIEACDSLPFLDEPDRANDLSTIDQIHMELMASCRMAMH
Ga0335081_100029276	3300032892	Soil	MLQIDPRRKAAECARAIERVADPERRIVLESLRSLWLAMSNALSILDEPDRADQLSTIEQIHSELMAVCRRAMH
Ga0335081_100061447	3300032892	Soil	MLLVDPWRKAAECDRAIALVADPERREVLESLRSLWVALCDPRSAAQAPGRAHQLSTIAQIHSELMVVCRRAMH
Ga0335069_106432012	3300032893	Soil	MLVLDPRTKAAECERAIERVADPERRIVLERLRCLWIEACDSLPFLDESDRANDLSTIDQIHMELMASCRMAMH
Ga0335069_110078162	3300032893	Soil	MDPLDPWSKAAECEQAIERVADPQRRIVFESLRSLWIEVSQNVGSFRDHRADHLSIIVQIHAELMLGY
Ga0335071_104361922	3300032897	Soil	MSSLDPWSKAAECDVAIARVADPERRIVLESLRSLWIEVCNSLVLFDEPDQVDQLSTIDQIHIELMAVCRTAMH
Ga0326726_101414343	3300033433	Peat Soil	MVLLDPWSKAAECDRALERVADPERRIVLESLRSLWIALCNSLSLRDDRHQANHLATIAQIHTELMATCRTAMH
Ga0326726_108315551	3300033433	Peat Soil	VASLDPWSKAAECDLAIERVADPERRIVLESLRSLWIDVCNSISLFDGPGEASDFSTITQIHMELMAVCRTAMH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences