Metagenome Family F079288

Basic Information
Family ID	F079288
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	56 residues
Representative Sequence	MSYSLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLTSELEREAEMLLAQYC
Number of Associated Samples	96
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	24.14 %
% of genes near scaffold ends (potentially truncated)	18.10 %
% of genes from short scaffolds (< 2000 bps)	79.31 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Most Common Taxonomy
Group	Unclassified (51.724 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.690 % of family members)
Environment Ontology (ENVO)	Unclassified (40.517 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.310 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.18% β-sheet: 0.00% Coil/Unstructured: 58.82%
Feature Viewer

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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF06348	DUF1059	6.90
PF14534	DUF4440	6.03
PF08734	GYD	2.59
PF04519	Bactofilin	1.72
PF04226	Transgly_assoc	1.72
PF06067	DUF932	1.72
PF13628	DUF4142	1.72
PF02201	SWIB	0.86
PF10861	DUF2784	0.86
PF00759	Glyco_hydro_9	0.86
PF12728	HTH_17	0.86
PF00990	GGDEF	0.86
PF07228	SpoIIE	0.86
PF01740	STAS	0.86
PF13751	DDE_Tnp_1_6	0.86
PF07929	PRiA4_ORF3	0.86
PF01243	Putative_PNPOx	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	2.59
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	1.72
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.72
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
All Organisms	root	All Organisms	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
cellular organisms	root	All Organisms → cellular organisms	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.45 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	6.03 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.38 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	6.03 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.86 %
Candidatus Omnitrophica	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.38 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	6.03 %
unclassified Candidatus Omnitrophica	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica	0.86 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.72 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.38 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	6.03 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.86 %
Candidatus Omnitrophica bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001160\|JGI12654J13325_1005075	Not Available	851	Open in IMG/M
3300001867\|JGI12627J18819_10376462	Not Available	576	Open in IMG/M
3300004114\|Ga0062593_100014284	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	3901	Open in IMG/M
3300004157\|Ga0062590_100446837	All Organisms → cellular organisms → Bacteria → Acidobacteria	1080	Open in IMG/M
3300005166\|Ga0066674_10546761	Not Available	516	Open in IMG/M
3300005178\|Ga0066688_10225169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1196	Open in IMG/M
3300005329\|Ga0070683_100039089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4354	Open in IMG/M
3300005330\|Ga0070690_101641369	Not Available	522	Open in IMG/M
3300005434\|Ga0070709_10123843	All Organisms → cellular organisms → Bacteria → Acidobacteria	1756	Open in IMG/M
3300005435\|Ga0070714_100174923	All Organisms → cellular organisms → Bacteria	1950	Open in IMG/M
3300005435\|Ga0070714_100389687	All Organisms → cellular organisms → Bacteria → Acidobacteria	1315	Open in IMG/M
3300005435\|Ga0070714_100841039	Not Available	890	Open in IMG/M
3300005439\|Ga0070711_100016517	All Organisms → cellular organisms → Bacteria	4688	Open in IMG/M
3300005444\|Ga0070694_100974649	Not Available	703	Open in IMG/M
3300005445\|Ga0070708_100025099	All Organisms → cellular organisms → Bacteria	5093	Open in IMG/M
3300005445\|Ga0070708_100417697	Not Available	1265	Open in IMG/M
3300005447\|Ga0066689_10362563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	905	Open in IMG/M
3300005450\|Ga0066682_10858027	Not Available	544	Open in IMG/M
3300005457\|Ga0070662_101867993	Not Available	519	Open in IMG/M
3300005467\|Ga0070706_100795235	Not Available	876	Open in IMG/M
3300005555\|Ga0066692_10664220	Not Available	649	Open in IMG/M
3300005559\|Ga0066700_10744113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300005577\|Ga0068857_100011155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7814	Open in IMG/M
3300005577\|Ga0068857_100215132	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1754	Open in IMG/M
3300005598\|Ga0066706_11324465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300005764\|Ga0066903_103468572	Not Available	850	Open in IMG/M
3300006057\|Ga0075026_101009659	Not Available	518	Open in IMG/M
3300006163\|Ga0070715_10012489	All Organisms → cellular organisms → Bacteria → Acidobacteria	3093	Open in IMG/M
3300006800\|Ga0066660_11050337	Not Available	650	Open in IMG/M
3300006854\|Ga0075425_100123690	All Organisms → cellular organisms → Bacteria	2953	Open in IMG/M
3300006903\|Ga0075426_10504010	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300009038\|Ga0099829_10107864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2175	Open in IMG/M
3300009038\|Ga0099829_10148900	All Organisms → cellular organisms → Bacteria → Acidobacteria	1866	Open in IMG/M
3300009038\|Ga0099829_10852975	Not Available	756	Open in IMG/M
3300009088\|Ga0099830_11056818	Not Available	673	Open in IMG/M
3300009088\|Ga0099830_11321576	Not Available	599	Open in IMG/M
3300009089\|Ga0099828_10105003	All Organisms → cellular organisms → Bacteria → Acidobacteria	2449	Open in IMG/M
3300009089\|Ga0099828_10628861	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300009089\|Ga0099828_11213521	Not Available	669	Open in IMG/M
3300009093\|Ga0105240_10162973	Not Available	2647	Open in IMG/M
3300009177\|Ga0105248_10598233	All Organisms → cellular organisms → Bacteria → Acidobacteria	1244	Open in IMG/M
3300009545\|Ga0105237_10100658	All Organisms → cellular organisms → Bacteria	2881	Open in IMG/M
3300009545\|Ga0105237_11242975	Not Available	751	Open in IMG/M
3300010371\|Ga0134125_11244355	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	813	Open in IMG/M
3300010373\|Ga0134128_10201858	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2238	Open in IMG/M
3300010373\|Ga0134128_11565834	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300010375\|Ga0105239_10412404	Not Available	1529	Open in IMG/M
3300010379\|Ga0136449_100997511	All Organisms → cellular organisms → Bacteria → Acidobacteria	1348	Open in IMG/M
3300010396\|Ga0134126_11105504	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300010396\|Ga0134126_12590314	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300010399\|Ga0134127_12877730	Not Available	560	Open in IMG/M
3300011119\|Ga0105246_10922313	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	785	Open in IMG/M
3300011271\|Ga0137393_10505098	Not Available	1037	Open in IMG/M
3300012096\|Ga0137389_10173266	All Organisms → cellular organisms → Bacteria	1782	Open in IMG/M
3300012189\|Ga0137388_10123451	Not Available	2258	Open in IMG/M
3300012189\|Ga0137388_10645570	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300012205\|Ga0137362_11493873	Not Available	562	Open in IMG/M
3300012354\|Ga0137366_10070179	All Organisms → cellular organisms → Bacteria	2670	Open in IMG/M
3300012359\|Ga0137385_10800335	Not Available	783	Open in IMG/M
3300012361\|Ga0137360_10101164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2205	Open in IMG/M
3300012361\|Ga0137360_11309441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300012362\|Ga0137361_10409095	Not Available	1246	Open in IMG/M
3300012532\|Ga0137373_10687557	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300012685\|Ga0137397_10658051	Not Available	779	Open in IMG/M
3300012922\|Ga0137394_11032103	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	682	Open in IMG/M
3300012930\|Ga0137407_11252449	Not Available	704	Open in IMG/M
3300012985\|Ga0164308_11843430	Not Available	564	Open in IMG/M
3300013307\|Ga0157372_10654069	Not Available	1224	Open in IMG/M
3300013308\|Ga0157375_12891372	Not Available	574	Open in IMG/M
3300015241\|Ga0137418_10026289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5377	Open in IMG/M
3300015371\|Ga0132258_13000355	Not Available	1170	Open in IMG/M
3300017927\|Ga0187824_10268986	Not Available	596	Open in IMG/M
3300018089\|Ga0187774_11322758	Not Available	523	Open in IMG/M
3300018431\|Ga0066655_11291772	Not Available	523	Open in IMG/M
3300018482\|Ga0066669_12207414	Not Available	522	Open in IMG/M
3300019887\|Ga0193729_1202314	Not Available	675	Open in IMG/M
3300020006\|Ga0193735_1078098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	949	Open in IMG/M
3300021432\|Ga0210384_10009190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10229	Open in IMG/M
3300021559\|Ga0210409_10805009	Not Available	812	Open in IMG/M
3300024181\|Ga0247693_1023582	Not Available	829	Open in IMG/M
3300025899\|Ga0207642_10038721	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2066	Open in IMG/M
3300025905\|Ga0207685_10028048	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1978	Open in IMG/M
3300025910\|Ga0207684_10592959	Not Available	947	Open in IMG/M
3300025910\|Ga0207684_10879696	Not Available	754	Open in IMG/M
3300025913\|Ga0207695_10337093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1396	Open in IMG/M
3300025917\|Ga0207660_10418360	Not Available	1081	Open in IMG/M
3300025919\|Ga0207657_10188334	Not Available	1666	Open in IMG/M
3300025927\|Ga0207687_10314733	Not Available	1265	Open in IMG/M
3300025936\|Ga0207670_10824722	Not Available	774	Open in IMG/M
3300025941\|Ga0207711_11035067	Not Available	761	Open in IMG/M
3300025986\|Ga0207658_12133477	Not Available	509	Open in IMG/M
3300026116\|Ga0207674_10347666	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1433	Open in IMG/M
3300026142\|Ga0207698_11384697	Not Available	718	Open in IMG/M
3300026331\|Ga0209267_1156483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	933	Open in IMG/M
3300026482\|Ga0257172_1034898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300027376\|Ga0209004_1090854	Not Available	517	Open in IMG/M
3300027548\|Ga0209523_1043010	Not Available	920	Open in IMG/M
3300027576\|Ga0209003_1099134	Not Available	549	Open in IMG/M
3300027603\|Ga0209331_1162803	Not Available	525	Open in IMG/M
3300027651\|Ga0209217_1004722	All Organisms → cellular organisms → Bacteria	4550	Open in IMG/M
3300027651\|Ga0209217_1017374	All Organisms → cellular organisms → Bacteria	2324	Open in IMG/M
3300027674\|Ga0209118_1081976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300027674\|Ga0209118_1139055	Not Available	673	Open in IMG/M
3300027854\|Ga0209517_10509443	Not Available	654	Open in IMG/M
3300027875\|Ga0209283_10149708	All Organisms → cellular organisms → Bacteria → Acidobacteria	1547	Open in IMG/M
3300031716\|Ga0310813_10018483	All Organisms → cellular organisms → Bacteria → Acidobacteria	4706	Open in IMG/M
3300031720\|Ga0307469_10298085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1326	Open in IMG/M
3300031754\|Ga0307475_10827947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300031820\|Ga0307473_10023819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2549	Open in IMG/M
3300031962\|Ga0307479_10191181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2015	Open in IMG/M
3300031962\|Ga0307479_11443290	Not Available	646	Open in IMG/M
3300031962\|Ga0307479_11458980	Not Available	642	Open in IMG/M
3300032180\|Ga0307471_102776498	Not Available	621	Open in IMG/M
3300032180\|Ga0307471_103511416	Not Available	555	Open in IMG/M
3300033412\|Ga0310810_10066108	All Organisms → cellular organisms → Bacteria → Proteobacteria	4376	Open in IMG/M
3300033433\|Ga0326726_10282278	Not Available	1554	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.03%
Host-Associated	Host-Associated	18.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.31%
Plants	Host-Associated → Plants	18.97%
Aquatic	Environmental → Aquatic	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.17%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Sediment	Environmental → Aquatic → Sediment	0.86%
Peat	Environmental → Terrestrial → Peat	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.45%
Loam	Environmental → Terrestrial → Soil → Loam	24.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024181	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK34	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12654J13325_10050752	3300001160	Forest Soil	MSYSLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLTSELEREAEMLLAQYC*
JGI12627J18819_103764621	3300001867	Forest Soil	MSTLPKYFRDIPAYLMDEIITGMIDGKMAPSSEEMEEWRISELEREAEALLAQYC*
Ga0062593_1000142842	3300004114	Soil	MSTLPKYYFRDIPAHLMEEIITGMIEGKMEPTPELEREAEAFLAESR*
Ga0062590_1004468372	3300004157	Soil	MSYSLPKYYFRDIPAYVMEEIINGMIEGKTEPTPEEMEEWLTSDLERQAEMLLAQYS*
Ga0066674_105467611	3300005166	Soil	MSTLPKYYFRDIPAYMMDEIITGMIDGKPEPTPEEIEGWLTSELEREAEALLASC*
Ga0066688_102251692	3300005178	Soil	MSYGLPKHYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWFTTELEREAEALLA*
Ga0070683_1000390891	3300005329	Corn Rhizosphere	LPKYYFRDIPAHLMEEIITGMIEGKMEPTPELEREAEAFLAESR*
Ga0070690_1016413691	3300005330	Switchgrass Rhizosphere	MSYSLPKYYFRDIPAYVMEEIVTGMIEGKPEPTPEEMEEWFTSDLERQAETLLARHS*
Ga0070709_101238432	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MECLPKYYFHDLPAYVMEDIITGMINGRPEPTRQEMEDWLREELEREAEALLAANG*
Ga0070714_1001749231	3300005435	Agricultural Soil	MECLPKYYFHDLPAYVMEDIITGMINGRPEPTRQEMEDWLREELEREAE
Ga0070714_1003896871	3300005435	Agricultural Soil	MKSLPKYYFHDLPAYVMEEIITGMTNGKPEPTQEEMEDWLTQELEREAEALLGANA*
Ga0070714_1008410393	3300005435	Agricultural Soil	LPKYYFHDLPAYVMEEIITGMINGNPEPTREEMQDWLAEEMEREAEALLAANG*
Ga0070711_1000165178	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSYSLPKYYFQDIPEYVMDEIINGMIEGKTEPTPEEMEEWLTSDLERQAEALLAQTC*
Ga0070694_1009746491	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MSYSLPKYYFQDIPEYVMEEIITGMIEGKTEPTLEEMEEWLTSDLERQAEALLAQTC*
Ga0070708_1000250994	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSYSIPKYYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTSELEREAEALLAENL*
Ga0070708_1004176972	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTYGLPKRYFRDIPACLMDEIIAGMIDGKPEPTPGEMEDWLISELEREAEALLARNC*
Ga0066689_103625631	3300005447	Soil	MSTLPKYYFRDIPAYMMDEIITGMIDRKPEPTPEEIEGWLTSELEREAEALLASC*
Ga0066682_108580271	3300005450	Soil	MSYGLPKHYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTTELEREAEALLA*
Ga0070662_1018679931	3300005457	Corn Rhizosphere	MSYSLPKYYFRDIPAYVMEEIVTGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS*
Ga0070706_1007952352	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTSLPTYYFRDVPAYMMDEIIAGMIDGKPEPTPGEIEEWLASELEREAEALLASC*
Ga0066692_106642201	3300005555	Soil	MSYGLPKHYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLASDLEREAEALPAQTC*
Ga0066700_107441132	3300005559	Soil	NIVAGKRLLTMSYGLPKHYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTTELEREAEALLA*
Ga0068857_10001115516	3300005577	Corn Rhizosphere	VAEKELLTMSTLPKYYFRDIPAHLMEEIITGMIEGKMEPTPELEREAEAFLAESR*
Ga0068857_1002151324	3300005577	Corn Rhizosphere	LNTKAGFINSMSYSLPKYYFRDIPAYVMEEIITGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS*
Ga0066706_113244651	3300005598	Soil	KYYFRDIPAYMMDEIITGMIDGKPEPTPEEIEGWLTSELEREAEALLASC*
Ga0066903_1034685722	3300005764	Tropical Forest Soil	MMYSLSKYHRLFPSYLMDEIITGVVDGKPEPTAEEMEDWLSSERKREARSAP*
Ga0075026_1010096592	3300006057	Watersheds	PNTKAGFINSMSNLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLASDLEREAEMLLAQYS*
Ga0070715_100124892	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSYSLSKYYFQDIPEYVMDEIINGMIEGKTEPTPEEMEEWLTSDLERQAEALLAQTC*
Ga0066660_110503371	3300006800	Soil	MSTLPKYFRDLPAYLMDEIITGMIDGKTAPTIEEMEEWRTSELEREAETLLAQYC*
Ga0075425_1001236903	3300006854	Populus Rhizosphere	MESLPKYYFRDLPAYVMEEIITGMINGRPEPTGQEMEDWLAEELEREAEALLAANA*
Ga0075426_105040103	3300006903	Populus Rhizosphere	MYYFRDIPAYVMEDIISGMIDGKPEPTPEEMEDWCREELEREAEALLVAHG*
Ga0099829_101078642	3300009038	Vadose Zone Soil	MSYSLPKYYFQDIPEYVMEEIINGMIEGKTEPTPEEMEERLASDLEREAEMLLAQYS*
Ga0099829_101489004	3300009038	Vadose Zone Soil	YYFQDIPEYVMDEIINGMIEGKTEPTLEELGEWLTSDLERQAEALLAQTC*
Ga0099829_108529751	3300009038	Vadose Zone Soil	MSALPKYYFRDIPAYLMDEIITGMIDGKTEPTPEEMEEWLTTELEREAEALLTQSR*
Ga0099830_110568182	3300009088	Vadose Zone Soil	MSYGLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLTSDLERQAEALLALSC*
Ga0099830_113215761	3300009088	Vadose Zone Soil	MSYSLPKYYFQDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTSELER
Ga0099828_101050033	3300009089	Vadose Zone Soil	MSYLPKYYFQDIPAAVMDEIIAGMIDGRPEPTVEEMEEWLTAEREREAETLLAQYC*
Ga0099828_106288612	3300009089	Vadose Zone Soil	MSYSLPKYYFQDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTSELEREAEALLAENC*
Ga0099828_112135212	3300009089	Vadose Zone Soil	FINSMSYSLPKYYFQDIPSYLMDEIIAGMIEGKTEPTPEEMEEWLASDLEREAESLLAQYS*
Ga0105240_101629733	3300009093	Corn Rhizosphere	MSNLPKYYFQDLPAYLMEEIITGMTNGEPEPMREEMNDWLTQELEREAEALLAANG*
Ga0105248_105982332	3300009177	Switchgrass Rhizosphere	MSYSLPKYYFRDIPAYVMEEIISGMIEGKPEPTPEEMEEWLTSDLERQAEALLAQTC*
Ga0105237_101006584	3300009545	Corn Rhizosphere	MSYSLPKYYFRDIPAYVMEEIITGMIEGKPEPTPEEMEEWFTSDLERQAETLLARHS*
Ga0105237_112429751	3300009545	Corn Rhizosphere	MSNLPKSYFQDLPAYLMEEIITGMTNGEPEPMREEMNDWLTQELEREAEALLAANG*
Ga0134125_112443551	3300010371	Terrestrial Soil	VAEKELLTMSTLPKYYFRDIPAHLMEEIITGMIEGKMEPTPELECEAEAFLAESR*
Ga0134128_102018583	3300010373	Terrestrial Soil	MSYSLPKYYFRDIPAYVMEEIITGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS*
Ga0134128_115658341	3300010373	Terrestrial Soil	KYYFHDLPAYVMEEIITGMINGRPEPTRQEMEDWLAEELEREAEALLAANA*
Ga0105239_104124041	3300010375	Corn Rhizosphere	MAGFINSMSYSLPKYYFRDIPAYVMEEIINGMIEGKTEPTPEEMEEWLTSDLERQAEMLLAQYS*
Ga0136449_1009975112	3300010379	Peatlands Soil	MSNLPKYYFQDIPAYLMDEIFNGMIDGKPEPTPEEMEECLTSELEREAEALLANC*
Ga0134126_111055041	3300010396	Terrestrial Soil	MESLPKYYFHDLPAYVMEEIITGMINGKPEPTPEEMEDWCREELEREAEALLVAHG*
Ga0134126_125903141	3300010396	Terrestrial Soil	MASLPKYYFHDLPAYVMEEIITGMINGRPEPTREEMEDWLTEKLEREAEALLAANA*
Ga0134127_128777301	3300010399	Terrestrial Soil	MSYSLPKYYFRDIPAYMMEEIINGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS*
Ga0105246_109223132	3300011119	Miscanthus Rhizosphere	GLPKFYFRDIPAYVMEEIINGMIEGKPGPTTEEMEEWLTSDLERQAETLLARHS*
Ga0137393_105050981	3300011271	Vadose Zone Soil	MSTLPKYYFRNIPAYLMDEIISGMIEGKVEPTPEEMEEWLTTELEREAEALLVQSR*
Ga0137389_101732662	3300012096	Vadose Zone Soil	MSYGLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLASDLEREAEMLLAQYS*
Ga0137388_101234511	3300012189	Vadose Zone Soil	MSYSLPKYYFRDIPAYLMDEIINGMIEGKTEPTPEEMEEWLASDLEREAESLLAQYS*
Ga0137388_106455702	3300012189	Vadose Zone Soil	MSHSLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLTSDLERQAEALLALSC*
Ga0137362_114938731	3300012205	Vadose Zone Soil	MSYSLPKYSFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEYLTSELEREAEALLAQNC*
Ga0137366_100701794	3300012354	Vadose Zone Soil	MSTLPKYYFRDIPAYVMDEIITGMIDGNMEPTPEEMEEWLTTELEREAEALLAESR*
Ga0137385_108003351	3300012359	Vadose Zone Soil	MSYSLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLVSDLEREAEMLLAQYSR*
Ga0137360_101011641	3300012361	Vadose Zone Soil	MSYGLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLASDLERE
Ga0137360_113094411	3300012361	Vadose Zone Soil	MSTLPKYYYRDIPAYLMDEIITGMIDGKTEPTPEEMEEWLTSEREREAEALLAEYR*
Ga0137361_104090953	3300012362	Vadose Zone Soil	MSYSLPKYYFQDIPEYVMEEIINGMIEGKTEPTPEEMGEWLASDLERQAEMLLAQNS*
Ga0137373_106875571	3300012532	Vadose Zone Soil	MSTLPKYYFRDIPAYVMDEIITGMIDGNMEPTPEEMEEWLTTELEREAEA
Ga0137397_106580511	3300012685	Vadose Zone Soil	MSYSLPKYYFRDIPAHVMEEIINKMIEGKMEPTPDEMEEWLTSDLEREAEMLLAQHS*
Ga0137394_110321031	3300012922	Vadose Zone Soil	EFINSMSYSLPKYYFQDIPDYLMDEIITGMIEGKTEPTPEEMEEWLASELERDPEILLAQYC*
Ga0137407_112524491	3300012930	Vadose Zone Soil	MSYSLPKYYFQDIPEYVMDEIINGMIEGKTEPTLEELGEWLTSDLERQAEALLAQTC*
Ga0164308_118434301	3300012985	Soil	SLPKYYFQDIPEYVMDEIINGMIEGKTEPTPEEMEEWLTSDLERQAEALLAQTF*
Ga0157372_106540692	3300013307	Corn Rhizosphere	MSYSLPKNYFRDIPAYVMEEIITGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS*
Ga0157375_128913722	3300013308	Miscanthus Rhizosphere	SMSYSLPKYYFQDIPEYVMEEIITGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS*
Ga0137418_100262895	3300015241	Vadose Zone Soil	MSYSLPKYYFQDIPEYVMEEIISGMIEGKTEPTPEEMGEWLASDLEPQAEALLAQTC*
Ga0132258_130003552	3300015371	Arabidopsis Rhizosphere	MSTLPKYYFRDIPAHMMEEIITGMIEGKMEPTPELEREAEAFLAESR*
Ga0187824_102689861	3300017927	Freshwater Sediment	MSYSLPKYYFQDIPAYVMEEIVNGMIEGKTEPTPEEMGEWLASDLEREAEMLLAQYS
Ga0187774_113227581	3300018089	Tropical Peatland	MAYGLPKYYYRDIPAYVMEEIITGMMEGKVEPTPEEMEEWLTSELEREAELLLAEQS
Ga0066655_112917722	3300018431	Grasslands Soil	MSTLPKYYFRDIPAYMMDEIITGMIDGKPEPTPEEIEGWLTSELEREAEALLASC
Ga0066669_122074141	3300018482	Grasslands Soil	MSYGLPKHYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTTELEREAEALLA
Ga0193729_12023141	3300019887	Soil	MSYSLPKYYFQDIPAYVMEEIITGMIEGKTEPTPEEMEEWLAYDLERQAEMLLAQDKVPLSFFLLGRTS
Ga0193735_10780981	3300020006	Soil	MSYGLPKHYFRDIPVYLMDEIIAGMIDGKPEPTPEEMEDWLTTELEREAEALLA
Ga0210384_100091906	3300021432	Soil	MSYSLPKYYFRDIPAYLMEEIITGMLDGKTEPTPEEMEEWLTSELEREAAALLAHNR
Ga0210409_108050091	3300021559	Soil	MSYSLPKHYFQDIPEYVMEEIINGMIEGKTEPTPEEMGEWLASDLERQAEALLAQTC
Ga0247693_10235822	3300024181	Soil	MSYSLPKYYFRDIPAYVMEEIVTGMIEGKPEPTPEEMEEWFTSDLERQAETLLARHS
Ga0207642_100387215	3300025899	Miscanthus Rhizosphere	MSTLPKYYFRDIPAHLMEEIITGMIEGKMEPTPELEREAEAFLAESR
Ga0207685_100280483	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSYSLPKYYFQDIPEYVMDEIINGMIEGKTEPTPEEMEEWLTSDLERQAEALLAQTC
Ga0207684_105929591	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTSLPTYYFRDVPAYMMDEIIAGMIDGKPEPTPGEIEEWLASELEREAEALLASC
Ga0207684_108796961	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSYSIPKYYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTSELEREAEALLAENL
Ga0207695_103370931	3300025913	Corn Rhizosphere	MSNLPKYYFQDLPAYLMEEIITGMTNGEPEPMREEMNDWLTQELEREAEALLAANG
Ga0207660_104183601	3300025917	Corn Rhizosphere	MSTLPKYYFRDIPAHLMEEIITGMIEGKMEPTPELEREAEAFL
Ga0207657_101883341	3300025919	Corn Rhizosphere	MSYSLPKYYFRDIPAYVMEEIINGMIEGKTEPTPEEMEEWLTSDLERQAETLLARHS
Ga0207687_103147332	3300025927	Miscanthus Rhizosphere	MSYSLPKYYFRDIPAYVMEEIITGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS
Ga0207670_108247221	3300025936	Switchgrass Rhizosphere	MSTLPKYYFRDIPAHLMEEIITGMIEGKLEPTPELEREAEAFLAESR
Ga0207711_110350672	3300025941	Switchgrass Rhizosphere	MSYSLPKYYFRDIPAYVMEEIISGMIEGKPEPTPEEMEEWLTSDLERQAEALLAQTC
Ga0207658_121334771	3300025986	Switchgrass Rhizosphere	MSYSLPKNYFRDIPAYVMEEIITGMIEGKPEPTPEEMEEWLTSDLERQAETLLARHS
Ga0207674_103476663	3300026116	Corn Rhizosphere	KAGFINSMSYSLPKYYFRDIPAYVMEEIISGMIEGKPEPTPEEMEEWFTSDLERQAETLLARHS
Ga0207698_113846971	3300026142	Corn Rhizosphere	MSTLPKYYFRDIPAHLMEEIITGMIEGKMEPTPELEREAEAF
Ga0209267_11564831	3300026331	Soil	MSYGLPKHYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWFTTELEREAEALLA
Ga0257172_10348982	3300026482	Soil	MSYSLPKYYFQDIPEYVMEEIINGMIEGKTEPTPEEMGEWLASDLEREAEMLLAQYS
Ga0209004_10908541	3300027376	Forest Soil	MSTLPKYLRDIPAYLMDEIITGMIEGKMAPTSEEMEEWRTSELEREAEALLAQYC
Ga0209523_10430101	3300027548	Forest Soil	MSTLPKYFRDIPAYLMDEIITGMIDGKMAPSSEEMEEWRISELEREAEALLAQYC
Ga0209003_10991341	3300027576	Forest Soil	MSSLPKYYCRDIPAYLMDEIITGMTDGKPEPTAEKMEERLTSEREREAETLLAQYC
Ga0209331_11628031	3300027603	Forest Soil	MSYSLPKYYFRDIPAYLMDEIIAGMIEGKTELTPEEMEEWLASDLEREAEMLLAQYS
Ga0209217_10047222	3300027651	Forest Soil	MSYSLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLTSELEREAEMLLAQYC
Ga0209217_10173742	3300027651	Forest Soil	MPYSLPKYYFRDIPAYLMDEIIAGMIDGKPEPPPEEMEDWLTSELEREAEALLAENL
Ga0209118_10819762	3300027674	Forest Soil	MSYSLPKYYFQDIPAYLMDEIITGMIDGKTEPTPEEMEEWLTSELEREAEALLAKNL
Ga0209118_11390551	3300027674	Forest Soil	MSYGLPKYYFRDIPAYLMDEIIAGMIDGKPEPTPEEMEDWLTSELEREAEALLAENL
Ga0209517_105094431	3300027854	Peatlands Soil	MSNLPKYYFQDIPAYLMDEIFNGMIDGKPEPTPEEMEECLTSELEREAEALLANC
Ga0209283_101497082	3300027875	Vadose Zone Soil	MSYLPKYYFQDIPAAVMDEIIAGMIDGRPEPTVEEMEEWLTAEREREAETLLAQYC
Ga0310813_100184835	3300031716	Soil	MSYGLPKFYFRDIPAYVMEEIINGMIEGKPGPTTEEMEEWLTSDLERQAEALLAQTC
Ga0307469_102980852	3300031720	Hardwood Forest Soil	MSYSLPKYNFQDIPEYVMAEIINGMIDGKAEPTPQEMEEWLTSDLKREAEMPLAQYS
Ga0307475_108279472	3300031754	Hardwood Forest Soil	MSHSLPKYYFRDIPDYVMEEIINGMIEGKAEPTPEEMEEWLASDLEHEAETLLAQYS
Ga0307473_100238196	3300031820	Hardwood Forest Soil	MSTLPRYFRDIPAYLMDEIITGMIDGKMAPSSEEMKEWRISELEREAEALLAQYC
Ga0307479_101911811	3300031962	Hardwood Forest Soil	MSHSLPKYYFRDIPDYVMEEIINGMIEGKAEPTPEEMEEWLASDLERKAETLLAQYS
Ga0307479_114432901	3300031962	Hardwood Forest Soil	MSTLPKYYYRDIPAYLMDEIITGMIEGKTEPTPEEIGEWLTSEREREAEALLAESR
Ga0307479_114589801	3300031962	Hardwood Forest Soil	MPYSIPKYYFRDIPAYLMDEIIAGMIDGKPEPTPEEMDDWLTSELEREAEELLAQNC
Ga0307471_1027764982	3300032180	Hardwood Forest Soil	STLSTLPRYVRDIPAYLMDEIRTGMIDGKMAPSSEEMKEWRISELEREAEALLAQYC
Ga0307471_1035114161	3300032180	Hardwood Forest Soil	MSHSLPKYYFRDIPEYVMDEIINGMIEGKTEPTPEEMEEWLTSDLERQAEALLAQTC
Ga0310810_100661089	3300033412	Soil	MYYFRDIPAYVMEDIISGMIDGKPEPTPEEMEDWCREELEREAEALLVAHG
Ga0326726_102822782	3300033433	Peat Soil	MSNLPKYYFRDIPAYLMDEIIAGMIEGKTEPTPEEMEEWLASDLEREAEMLLAQYS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079288

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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