Metagenome Family F079437

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079437
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	53 residues
Representative Sequence	VRLRVPQGIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRVDAGDPTG
Number of Associated Samples	74
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.77 %
% of genes near scaffold ends (potentially truncated)	87.83 %
% of genes from short scaffolds (< 2000 bps)	85.22 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.696 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.174 % of family members)
Environment Ontology (ENVO)	Unclassified (78.261 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (51.304 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.23% β-sheet: 10.26% Coil/Unstructured: 70.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02604	PhdYeFM_antitox	11.30
PF01863	YgjP-like	6.96
PF09907	HigB_toxin	3.48
PF11663	Toxin_YhaV	3.48
PF04365	BrnT_toxin	1.74
PF00400	WD40	1.74
PF05362	Lon_C	1.74
PF17090	Ytca	1.74
PF16868	NMT1_3	1.74
PF04986	Y2_Tnp	1.74
PF03237	Terminase_6N	1.74
PF00271	Helicase_C	1.74
PF01381	HTH_3	1.74
PF02653	BPD_transp_2	1.74
PF04255	DUF433	0.87
PF04392	ABC_sub_bind	0.87
PF15937	PrlF_antitoxin	0.87
PF01828	Peptidase_A4	0.87
PF05050	Methyltransf_21	0.87
PF01906	YbjQ_1	0.87
PF04909	Amidohydro_2	0.87
PF02310	B12-binding	0.87
PF13238	AAA_18	0.87
PF03466	LysR_substrate	0.87
PF06114	Peptidase_M78	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	11.30
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	11.30
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	6.96
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	1.74
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	1.74
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	1.74
COG2929	Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin system	Defense mechanisms [V]	1.74
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	1.74
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.87
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.70 %
Unclassified	root	N/A	31.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.70 %
Unclassified	root	N/A	31.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.70 %
Unclassified	root	N/A	31.30 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.74 %
Unclassified	root	N/A	31.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.74 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.17 %
Unclassified	root	N/A	31.30 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Immundisolibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Immundisolibacterales	0.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.30 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.96 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.61 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.87 %
Immundisolibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Immundisolibacterales → Immundisolibacteraceae	0.87 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.87 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.87 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.30 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.96 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	3.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.61 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	1.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.87 %
Immundisolibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Immundisolibacterales → Immundisolibacteraceae → Immundisolibacter	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.87 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.30 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	6.09 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	2.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.61 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	1.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.87 %
Immundisolibacter cernigliae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Immundisolibacterales → Immundisolibacteraceae → Immundisolibacter → Immundisolibacter cernigliae	0.87 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.30 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	3.48 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	2.61 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2.61 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.61 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	1.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.74 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.87 %
Immundisolibacter cernigliae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Immundisolibacterales → Immundisolibacteraceae → Immundisolibacter → Immundisolibacter cernigliae	0.87 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003219\|JGI26341J46601_10001356	All Organisms → cellular organisms → Bacteria → Proteobacteria	7939	Open in IMG/M
3300003219\|JGI26341J46601_10200927	Not Available	541	Open in IMG/M
3300003368\|JGI26340J50214_10091555	Not Available	787	Open in IMG/M
3300004080\|Ga0062385_10005076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4066	Open in IMG/M
3300004080\|Ga0062385_10806174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	615	Open in IMG/M
3300004092\|Ga0062389_103565519	Not Available	584	Open in IMG/M
3300004092\|Ga0062389_103616036	Not Available	580	Open in IMG/M
3300004092\|Ga0062389_103713529	Not Available	573	Open in IMG/M
3300004635\|Ga0062388_100016423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4163	Open in IMG/M
3300005764\|Ga0066903_100758398	All Organisms → cellular organisms → Bacteria → Proteobacteria	1725	Open in IMG/M
3300005764\|Ga0066903_103651092	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005764\|Ga0066903_105248547	Not Available	685	Open in IMG/M
3300005764\|Ga0066903_107891653	Not Available	547	Open in IMG/M
3300010343\|Ga0074044_10025620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4209	Open in IMG/M
3300010361\|Ga0126378_10105746	All Organisms → cellular organisms → Bacteria	2788	Open in IMG/M
3300010361\|Ga0126378_11910645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	676	Open in IMG/M
3300010376\|Ga0126381_101658293	Not Available	924	Open in IMG/M
3300010376\|Ga0126381_104782874	Not Available	521	Open in IMG/M
3300016270\|Ga0182036_11573078	Not Available	553	Open in IMG/M
3300016319\|Ga0182033_10626174	All Organisms → cellular organisms → Bacteria → Proteobacteria	937	Open in IMG/M
3300016341\|Ga0182035_11001407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	741	Open in IMG/M
3300016341\|Ga0182035_11697099	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300016357\|Ga0182032_10079412	Not Available	2248	Open in IMG/M
3300016357\|Ga0182032_11084395	Not Available	686	Open in IMG/M
3300016357\|Ga0182032_11273644	Not Available	634	Open in IMG/M
3300016357\|Ga0182032_11323217	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300016371\|Ga0182034_10307702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1273	Open in IMG/M
3300016387\|Ga0182040_11098946	Not Available	666	Open in IMG/M
3300016387\|Ga0182040_11640480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	548	Open in IMG/M
3300016404\|Ga0182037_11085163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	700	Open in IMG/M
3300016445\|Ga0182038_10090644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2190	Open in IMG/M
3300020579\|Ga0210407_11036875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300020583\|Ga0210401_11228218	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	608	Open in IMG/M
3300021560\|Ga0126371_13569348	Not Available	525	Open in IMG/M
3300027824\|Ga0209040_10182563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1103	Open in IMG/M
3300027824\|Ga0209040_10304374	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300031544\|Ga0318534_10184551	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300031544\|Ga0318534_10841164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300031545\|Ga0318541_10226835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1036	Open in IMG/M
3300031546\|Ga0318538_10511043	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300031549\|Ga0318571_10450028	Not Available	511	Open in IMG/M
3300031561\|Ga0318528_10107895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1465	Open in IMG/M
3300031561\|Ga0318528_10170191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1163	Open in IMG/M
3300031561\|Ga0318528_10193862	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300031561\|Ga0318528_10223783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300031572\|Ga0318515_10756701	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031681\|Ga0318572_10771969	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031718\|Ga0307474_10764964	Not Available	764	Open in IMG/M
3300031723\|Ga0318493_10737768	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300031724\|Ga0318500_10607222	Not Available	555	Open in IMG/M
3300031736\|Ga0318501_10157330	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300031736\|Ga0318501_10676221	Not Available	568	Open in IMG/M
3300031744\|Ga0306918_11114980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	611	Open in IMG/M
3300031747\|Ga0318502_10440743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Immundisolibacterales → Immundisolibacteraceae → Immundisolibacter → Immundisolibacter cernigliae	777	Open in IMG/M
3300031747\|Ga0318502_10875207	Not Available	546	Open in IMG/M
3300031747\|Ga0318502_10972454	Not Available	517	Open in IMG/M
3300031764\|Ga0318535_10136457	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300031770\|Ga0318521_10172477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1238	Open in IMG/M
3300031771\|Ga0318546_10271215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1171	Open in IMG/M
3300031777\|Ga0318543_10330529	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300031781\|Ga0318547_11043744	Not Available	511	Open in IMG/M
3300031782\|Ga0318552_10706412	Not Available	514	Open in IMG/M
3300031792\|Ga0318529_10161732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1033	Open in IMG/M
3300031794\|Ga0318503_10219997	Not Available	616	Open in IMG/M
3300031833\|Ga0310917_10274126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1138	Open in IMG/M
3300031835\|Ga0318517_10148147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1048	Open in IMG/M
3300031879\|Ga0306919_10048535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	2796	Open in IMG/M
3300031879\|Ga0306919_10767310	Not Available	742	Open in IMG/M
3300031890\|Ga0306925_11625133	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300031896\|Ga0318551_10311425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	887	Open in IMG/M
3300031897\|Ga0318520_10672801	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031910\|Ga0306923_10163407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2543	Open in IMG/M
3300031910\|Ga0306923_10216962	All Organisms → cellular organisms → Bacteria → Proteobacteria	2188	Open in IMG/M
3300031910\|Ga0306923_10574102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1269	Open in IMG/M
3300031910\|Ga0306923_11344979	Not Available	755	Open in IMG/M
3300031910\|Ga0306923_11367739	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300031912\|Ga0306921_11067431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	907	Open in IMG/M
3300031912\|Ga0306921_11232754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300031941\|Ga0310912_10411546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1053	Open in IMG/M
3300031942\|Ga0310916_10103679	Not Available	2289	Open in IMG/M
3300031942\|Ga0310916_10268309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1441	Open in IMG/M
3300031946\|Ga0310910_11142627	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300031947\|Ga0310909_10016433	All Organisms → cellular organisms → Bacteria	5225	Open in IMG/M
3300031947\|Ga0310909_10239939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1513	Open in IMG/M
3300032001\|Ga0306922_11564005	Not Available	657	Open in IMG/M
3300032035\|Ga0310911_10816154	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300032041\|Ga0318549_10030734	All Organisms → cellular organisms → Bacteria	2113	Open in IMG/M
3300032042\|Ga0318545_10037335	All Organisms → cellular organisms → Bacteria → Proteobacteria	1613	Open in IMG/M
3300032043\|Ga0318556_10153748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1188	Open in IMG/M
3300032044\|Ga0318558_10230331	All Organisms → cellular organisms → Bacteria → Proteobacteria	909	Open in IMG/M
3300032051\|Ga0318532_10232870	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300032055\|Ga0318575_10279979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	843	Open in IMG/M
3300032055\|Ga0318575_10465565	Not Available	642	Open in IMG/M
3300032059\|Ga0318533_10003162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8915	Open in IMG/M
3300032059\|Ga0318533_10141281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1698	Open in IMG/M
3300032063\|Ga0318504_10346940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	705	Open in IMG/M
3300032064\|Ga0318510_10051201	All Organisms → cellular organisms → Bacteria → Proteobacteria	1462	Open in IMG/M
3300032064\|Ga0318510_10283180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300032065\|Ga0318513_10231090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	894	Open in IMG/M
3300032066\|Ga0318514_10225847	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300032067\|Ga0318524_10504899	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300032067\|Ga0318524_10588050	Not Available	586	Open in IMG/M
3300032076\|Ga0306924_10126793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2908	Open in IMG/M
3300032090\|Ga0318518_10104537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1416	Open in IMG/M
3300032261\|Ga0306920_100423680	Not Available	1978	Open in IMG/M
3300032261\|Ga0306920_101718785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	888	Open in IMG/M
3300032261\|Ga0306920_102040265	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300032261\|Ga0306920_102437809	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300032261\|Ga0306920_102995333	Not Available	638	Open in IMG/M
3300032261\|Ga0306920_104385318	Not Available	506	Open in IMG/M
3300033289\|Ga0310914_10770971	Not Available	859	Open in IMG/M
3300033289\|Ga0310914_10911587	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300033289\|Ga0310914_11809132	Not Available	515	Open in IMG/M
3300033290\|Ga0318519_10017486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3129	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.57%
Aquatic	Environmental → Aquatic	10.43%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.57%
Freshwater	Environmental → Aquatic → Freshwater	10.43%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.22%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.43%
Loam	Environmental → Terrestrial → Soil → Loam	3.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	80.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	10.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26341J46601_100013564	3300003219	Bog Forest Soil	MLAEGAGRQPIARERRVRLRVPAGIGRINLLHLNVAADGTVRMLESAAESLLRAGWVRVD
JGI26341J46601_102009272	3300003219	Bog Forest Soil	APERRVRLRVPPGIGHRNMLLLNVAADGTVEMPEAEAESFLRAGWVRVDAGDLAGTRTAV
JGI26340J50214_100915552	3300003368	Bog Forest Soil	AAGERRVRLRVPPGIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVNEGDFLE*
Ga0062385_100050761	3300004080	Bog Forest Soil	GIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVNEGDFLE*
Ga0062385_108061741	3300004080	Bog Forest Soil	MLAEGAGRQPIARERRVRLRVPAGIGRINLLHLNVAADGTVRMLESAAE
Ga0062389_1035655191	3300004092	Bog Forest Soil	AEEARGQQARREQRVRLRVPAGIGRINLLHLNVAADGTVEMPEDEAESFLRAGWVRVEAGKPPG*
Ga0062389_1036160361	3300004092	Bog Forest Soil	RVPPGIGRMNMLHLNVGADGTAEMLESEAESFLRAGWVRVDGGKPPG*
Ga0062389_1037135291	3300004092	Bog Forest Soil	GIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVEAGKPPG*
Ga0062386_1003924443	3300004152	Bog Forest Soil	GIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRMEAGGLPE*
Ga0062388_1000164232	3300004635	Bog Forest Soil	ERRVRLRVPPGIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVNEGDFLE*
Ga0066903_1007583985	3300005764	Tropical Forest Soil	VPAGIGHRNMLLLNVAADGTAEMSEEDAEPLLRAGWVRVDTGDSAE*
Ga0066903_1036510922	3300005764	Tropical Forest Soil	VPAGIGHRNMLLLNVAADGTAEMSEEDAEPLLRAGWVRVDDKRSTDSNCF*
Ga0066903_1052485471	3300005764	Tropical Forest Soil	GGLGRQARVEQRVRLRVPSGIGRMNLLHLNVAADGTCEMLESEAESLLRAGWERVDDL*
Ga0066903_1078916531	3300005764	Tropical Forest Soil	TVRLRVPPGIGRMNMLHLNVAADGTVEMPEDEAESFLRAGWVRVDVGDATV*
Ga0074044_100256203	3300010343	Bog Forest Soil	MLAEGAGRQPTARERRVPLRVPAGIGRINLLHLNVAADGTVEMLETAAESLLRAGWVRVD
Ga0126378_101057467	3300010361	Tropical Forest Soil	GEAAKRRTVRLRVPPGIGRMNMLHLNVAADGTVEMPEDEAQSFLRAGWIRVGDGN*
Ga0126378_119106451	3300010361	Tropical Forest Soil	VRLRVPPGIGRINLLHLNVAADGTVEMPEEEAQSFLRAGWIRVEAG*
Ga0126381_1016582931	3300010376	Tropical Forest Soil	VRLRVPPGIGRINMLHLNVAADGTVEMPEEEAESFLRAGWVRVVAGDAPA*
Ga0126381_1047828741	3300010376	Tropical Forest Soil	RERRVRLRVPQGIGRMNLLHLNVASDGTVEMPEAEAESFLRAGWEWADA*
Ga0182036_115730781	3300016270	Soil	QRRVRLRVPQGIGHRNMLLLNVAPDGTVEMSEEDAEPFLRAGWVRVDGGDARG
Ga0182033_106261742	3300016319	Soil	VRLRVPPGIGRVNMLHLNVAADGTVEMPEEEAESFLRAGWVRVGDDAE
Ga0182035_110014073	3300016341	Soil	RAEELRRGEAERQRRVRLRVPQGIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRVDAGDPTG
Ga0182035_116970991	3300016341	Soil	EVRRGEAERQRRVRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA
Ga0182032_100794121	3300016357	Soil	AHGQQADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL
Ga0182032_110843951	3300016357	Soil	GEAERQRRVRRRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0182032_112736441	3300016357	Soil	ARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ
Ga0182032_113232172	3300016357	Soil	RVPQGIGRMNLLHLNVGPDGTVEMPEGEAESFLRAGWVRVDTGDLQG
Ga0182034_103077022	3300016371	Soil	YRQRAGEARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ
Ga0182040_110989462	3300016387	Soil	LRVPTGIGRMNLLHLNVAADGTLEMPEAEAESFLRAGWVRVDTGEPPG
Ga0182040_116404802	3300016387	Soil	VPSGIGRMNMLHLGVAADGTVEMQEEEAESFLRAGWVRVDYQ
Ga0182037_110851632	3300016404	Soil	RPATRRRVRLRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ
Ga0182038_100906443	3300016445	Soil	VLGSRFQHERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKADAGDGQG
Ga0210407_110368751	3300020579	Soil	RMRAEAARGQQGGREQRVRLRVPAGIGRMNMLHLNVAADGTCEMLESEAESFLRAGWERVDAGEP
Ga0210401_112282181	3300020583	Soil	VRLRVAPGIGRMNLLHLNVGSDGTVEMPESEAESFLRAGWVRDD
Ga0126371_135693481	3300021560	Tropical Forest Soil	RLRVPPGIGRMNLLHLNVGSDGTVELPEEEAQSFLRAGWVRVEAGDAPA
Ga0209040_101825633	3300027824	Bog Forest Soil	EARRQQAEGDRRVRLRVPQGIGRMNLLHLNVAADGTVEMPESEAESFLRAGWIRVEAGD
Ga0209040_103043742	3300027824	Bog Forest Soil	RIRLRAPAGIGHRNMLLLNIAADGTVEMPEAEAESFLRAGWVRVDASDLSGTGSSGLRSSRARS
Ga0318534_101845511	3300031544	Soil	GQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318534_108411642	3300031544	Soil	RRVRLRVPAGIGRMNMLHLNVAADGTVEMLEEEAESFLRAGWVRVDDPLS
Ga0318541_102268353	3300031545	Soil	VPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ
Ga0318538_105110433	3300031546	Soil	CVPPGVGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318571_104500282	3300031549	Soil	GQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ
Ga0318528_101078953	3300031561	Soil	VRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0318528_101701911	3300031561	Soil	QADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL
Ga0318528_101938624	3300031561	Soil	VRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA
Ga0318528_102237832	3300031561	Soil	ERRRRVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG
Ga0318515_107567012	3300031572	Soil	QRRVRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA
Ga0318572_107719692	3300031681	Soil	EELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0307474_107649641	3300031718	Hardwood Forest Soil	RRQQDRREQRVRLRVPPGIGRMNLLHLNAAADGTVEMPESEVESFLRAGWEKVDAGEPPG
Ga0318493_107377681	3300031723	Soil	YRMRAEELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318500_106072222	3300031724	Soil	GEAARQRRVSLRAPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKVDTHELQG
Ga0318501_101573301	3300031736	Soil	QDRREQRVRLRVPAGIGRMNMLHLNVGPDGTVEMPVREAESFLRAGWEKVDAGEPPG
Ga0318501_106762212	3300031736	Soil	GQQADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL
Ga0306918_111149802	3300031744	Soil	IGRVNMLHLNVAADGTVEMPEEEAESFLRAGWVRVGDDAE
Ga0318502_104407431	3300031747	Soil	PGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA
Ga0318502_108752072	3300031747	Soil	RRVSLRAPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKVDTHELQG
Ga0318502_109724542	3300031747	Soil	SRVRLCVPPGIGHRNLLLLNVAADGTVEMLASEAEACLRAGWLRVD
Ga0318535_101364574	3300031764	Soil	ARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318521_101724774	3300031770	Soil	PQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0318546_102712154	3300031771	Soil	ERQRRVRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0318543_103305291	3300031777	Soil	VRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318547_110437441	3300031781	Soil	VRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL
Ga0318552_107064121	3300031782	Soil	EAERQRRVRLRVPQGIGHSNMLLLNVAADGTVEMPEEDAESFLRARWVKVDPGDLLG
Ga0318529_101617321	3300031792	Soil	RRRVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG
Ga0318503_102199971	3300031794	Soil	AGIGRMNMLHLNVAADGTVEMLESEAESFLRAGWVRVDTDNKAQ
Ga0310917_102741261	3300031833	Soil	LRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ
Ga0318517_101481472	3300031835	Soil	DRQRAGEARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ
Ga0306919_100485351	3300031879	Soil	LRRGEAARRRRVRLRVPQGIGHMNMLLLNVAADGTCEMTEEDAESFLRAGWVRVDAGDPT
Ga0306919_107673101	3300031879	Soil	VRLRVPPGIGRRVNMLHLNVAADGTVEMPEEEAQSFLRAGWERVGVGDAPS
Ga0306925_116251331	3300031890	Soil	LRVPQAIGHRNMLLLNLAADGTVEMSEAEAESFLRAGWVRVDVGD
Ga0318551_103114252	3300031896	Soil	VRLRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ
Ga0318520_106728011	3300031897	Soil	RQRRVRLRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWVKVDSTA
Ga0306923_101634072	3300031910	Soil	VLGSRFQHERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKVDAGDGRGLE
Ga0306923_102169623	3300031910	Soil	VLGSRFQHERRRRVRLRVAQGIGDRNMLLLNVAADGTCEMTEEDAESFLRAGWVRVDTGHLQG
Ga0306923_105741021	3300031910	Soil	YRQRAKELRRGEAERQRRVRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0306923_113449791	3300031910	Soil	YRQRAEELRRGEAERQRRVRLHVPQGIGRMNLLQLNVAADGTAEMLEEEAESFLRAGWVKVDAGDGRG
Ga0306923_113677393	3300031910	Soil	ERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWIRVDAGDGRG
Ga0306921_110674311	3300031912	Soil	AARRRRVRLRVPQGIGHMNMLLLNVAADGTCEMTEEDAESFLRAGWERVDAGDGRG
Ga0306921_112327542	3300031912	Soil	VRLRVPSGIGRMNMLHLGVAADGTVEMPEDEAESFLR
Ga0310912_104115461	3300031941	Soil	VRLRVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGW
Ga0310916_101036791	3300031942	Soil	HGQQADRERRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL
Ga0310916_102683091	3300031942	Soil	ELCRGETERRRRVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG
Ga0310910_111426271	3300031946	Soil	RQRRVRLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA
Ga0310909_100164331	3300031947	Soil	RLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA
Ga0310909_102399395	3300031947	Soil	RRVRLRVPAGIGQRNMLLLDVAADGTVEMPEAEAESFLRAGWVKVDTGELQG
Ga0306922_115640051	3300032001	Soil	SPGIGHANLRHLNVAADGTVEMPESEAESFLRAGWVRVDLGEKSVF
Ga0310911_108161542	3300032035	Soil	ELRRGEAERQRRVRLRVPQGIGHRNMLLLSVAADGTVEMPEAEAESFLRAGWVRVDAGDGRG
Ga0318549_100307344	3300032041	Soil	PQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318545_100373355	3300032042	Soil	ELYRMRAEELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318556_101537481	3300032043	Soil	HQARRERRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318558_102303311	3300032044	Soil	EEARRQQARREHRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318532_102328701	3300032051	Soil	EEARGQQAWGERWVRLCVPPGIGRMNLLHLNVAADGTVEMLESEAQSFLRAGWERVHADGLAGTESSDLT
Ga0318575_102799793	3300032055	Soil	RVPSGIGRMNMLHLGVAADGTVEMPEEEAESFLRAGWVRVDYQ
Ga0318575_104655652	3300032055	Soil	LRVPQGIGQHNMLLLNVAADGTVEMPEAEAESFLRAGWVRVDAGDERG
Ga0318533_100031621	3300032059	Soil	RVRLRVPPGIGHRNMLLLNVAADGTVEMSESEAESFLRAGWVKVDADDRRG
Ga0318533_101412815	3300032059	Soil	RAEELCRGKAERQRRVRLRVPAGIGQRNMLLLDVAADGTVEMPEAEAESFLRAGWVKVDTGELQG
Ga0318504_103469402	3300032063	Soil	VRLRVPSGIGRMNMLHLNVAADGTVEMPEEEAQSFLRAGWERVDAGDAPAQQSG
Ga0318510_100512014	3300032064	Soil	RMRAEELRELQARRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318510_102831801	3300032064	Soil	RRVRLRVPPGIGRMNLLLLNVAADGTVEMPEAEAASFLRAGWIRVDGGDL
Ga0318513_102310901	3300032065	Soil	AGEARGQQAQRERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRAGWERVDAGDLAGTRGSGSQ
Ga0318514_102258472	3300032066	Soil	LQQVERQRRVRLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA
Ga0318524_105048992	3300032067	Soil	RRGQRVRLRVPQGIGRMNLLHLNVGPDGTVEMPVSEAESFLRAGWVRMDDL
Ga0318524_105880501	3300032067	Soil	RERRVRLRVPAGVGRMNLLHLNVAADGTAEMLEEEAESFLRVGWERVDAGDLAGTRGSGS
Ga0306924_101267934	3300032076	Soil	VRLRVPQGIGHRNMLLLNVAADGTVEMPESEAESFLRAGWVRVDAGDPTG
Ga0318518_101045374	3300032090	Soil	VRRRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0306920_1004236802	3300032261	Soil	AEEARRQQAAGERRVRLRVPQGIGRMNMLHLNVAADGTVEMLESEAESLLRAGWVRVDAGKPQT
Ga0306920_1017187853	3300032261	Soil	RQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWIRVDAGDGRG
Ga0306920_1020402652	3300032261	Soil	LRVPPGIGHRNLLLLNVACDGTVEMPEAEAESFLRAGWIRVDGTS
Ga0306920_1024378091	3300032261	Soil	VRLRVPQGIGHRNLLLLNVAAGGTCETLESEAESFLQAGWEQVGT
Ga0306920_1029953332	3300032261	Soil	FCPVLGSRFQHERQRRVRLRVPQGIGHRNMLLLNVAADGTCDMTEEDAESFLRVGWIRVDGTS
Ga0306920_1043853182	3300032261	Soil	RLRLRVRPGIGHMNRRHLNVATCGTVEMPESEAESLLRAGWV
Ga0310914_107709713	3300033289	Soil	GEAERQRRVRLRVPQGIGHRNMLFLNVAADGTIEMPEGEAGSFLRAGWVRVDAED
Ga0310914_109115872	3300033289	Soil	QRAEEVRRGEAERQRRVRLRVPQGIGHRNMLLLNVAADGTCEMTEEDAESFLRAGWVKADAGDGQG
Ga0310914_118091321	3300033289	Soil	GSRPAANAGRLRVPQGIGRMNMLHLNVAADGTCEMSEEDAESFLRAGWDRADLGDQRG
Ga0318519_100174861	3300033290	Soil	RVRLRVPQGIGRMNLLHLNVASDGTVEMPESEAQSFLRAGWEWADA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079437

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences