Metagenome / Metatranscriptome Family F079482

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079482
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	52 residues
Representative Sequence	FERLRGAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKDRETVT
Number of Associated Samples	77
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.61 %
% of genes near scaffold ends (potentially truncated)	95.65 %
% of genes from short scaffolds (< 2000 bps)	94.78 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.783 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.043 % of family members)
Environment Ontology (ENVO)	Unclassified (34.783 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.348 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF03861	ANTAR	8.70
PF09557	DUF2382	5.22
PF05552	TM_helix	5.22
PF05239	PRC	3.48
PF03405	FA_desaturase_2	3.48
PF14325	DUF4383	1.74
PF13602	ADH_zinc_N_2	1.74
PF02371	Transposase_20	1.74
PF00313	CSD	1.74
PF13367	PrsW-protease	1.74
PF06772	LtrA	1.74
PF00106	adh_short	0.87
PF13561	adh_short_C2	0.87
PF00496	SBP_bac_5	0.87
PF00583	Acetyltransf_1	0.87
PF13011	LZ_Tnp_IS481	0.87
PF16124	RecQ_Zn_bind	0.87
PF00535	Glycos_transf_2	0.87
PF00486	Trans_reg_C	0.87
PF09844	DUF2071	0.87
PF00248	Aldo_ket_red	0.87
PF12073	DUF3553	0.87
PF01261	AP_endonuc_2	0.87
PF14023	DUF4239	0.87
PF03259	Robl_LC7	0.87
PF13751	DDE_Tnp_1_6	0.87
PF06689	zf-C4_ClpX	0.87
PF01548	DEDD_Tnp_IS110	0.87
PF03807	F420_oxidored	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	8.70
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	5.22
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	5.22
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.61
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	1.74
COG2018	Predicted regulator of Ras-like GTPase activity, Roadblock/LC7/MglB family	Signal transduction mechanisms [T]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
All Organisms	root	All Organisms	45.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
cellular organisms	root	All Organisms → cellular organisms	45.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.26 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.17 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.87 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.87 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.65 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.74 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.87 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.87 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	1.74 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.74 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.74 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.74 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.87 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	1.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.74 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.87 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.87 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.87 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	1.74 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.87 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.87 %
Propioniciclava	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Propioniciclava	0.87 %
Candidatus Jettenia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia	0.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.78 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Deinococcus budaensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus budaensis	0.87 %
Nocardioides panzhihuensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panzhihuensis	0.87 %
Streptomyces alboflavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alboflavus	0.87 %
Propioniciclava	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Propioniciclava	0.87 %
Candidatus Jettenia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia	0.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_10330703	Not Available	536	Open in IMG/M
3300000443\|F12B_11276555	Not Available	576	Open in IMG/M
3300000559\|F14TC_101486799	Not Available	551	Open in IMG/M
3300000956\|JGI10216J12902_111620453	Not Available	585	Open in IMG/M
3300000956\|JGI10216J12902_115406323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	901	Open in IMG/M
3300000956\|JGI10216J12902_125449645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300003203\|JGI25406J46586_10199721	Not Available	584	Open in IMG/M
3300003373\|JGI25407J50210_10035384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1287	Open in IMG/M
3300004463\|Ga0063356_101302066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1063	Open in IMG/M
3300004463\|Ga0063356_103907244	Not Available	642	Open in IMG/M
3300005562\|Ga0058697_10441186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	654	Open in IMG/M
3300005981\|Ga0081538_10095874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1514	Open in IMG/M
3300006049\|Ga0075417_10481950	Not Available	622	Open in IMG/M
3300009553\|Ga0105249_13580128	Not Available	500	Open in IMG/M
3300009789\|Ga0126307_10942985	Not Available	697	Open in IMG/M
3300009815\|Ga0105070_1031582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	949	Open in IMG/M
3300009840\|Ga0126313_10063312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2642	Open in IMG/M
3300009840\|Ga0126313_10234782	Not Available	1418	Open in IMG/M
3300009840\|Ga0126313_11728000	Not Available	522	Open in IMG/M
3300009840\|Ga0126313_11779209	Not Available	515	Open in IMG/M
3300010036\|Ga0126305_10919910	Not Available	598	Open in IMG/M
3300010037\|Ga0126304_10625235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus → Deinococcus budaensis	726	Open in IMG/M
3300010038\|Ga0126315_10098663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panzhihuensis	1672	Open in IMG/M
3300010038\|Ga0126315_11188656	Not Available	518	Open in IMG/M
3300010040\|Ga0126308_10971565	Not Available	594	Open in IMG/M
3300010041\|Ga0126312_10261304	Not Available	1217	Open in IMG/M
3300010041\|Ga0126312_11105979	Not Available	582	Open in IMG/M
3300010042\|Ga0126314_10833983	Not Available	680	Open in IMG/M
3300010042\|Ga0126314_11075325	Not Available	599	Open in IMG/M
3300010042\|Ga0126314_11132919	Not Available	583	Open in IMG/M
3300010044\|Ga0126310_10565832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	842	Open in IMG/M
3300010045\|Ga0126311_11477617	Not Available	569	Open in IMG/M
3300010166\|Ga0126306_10002949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9757	Open in IMG/M
3300010166\|Ga0126306_10412193	Not Available	1058	Open in IMG/M
3300010166\|Ga0126306_10664660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300011422\|Ga0137425_1184337	Not Available	522	Open in IMG/M
3300012021\|Ga0120192_10091395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	604	Open in IMG/M
3300012937\|Ga0162653_100009612	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300012941\|Ga0162652_100011014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1123	Open in IMG/M
3300014487\|Ga0182000_10106850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	949	Open in IMG/M
3300018061\|Ga0184619_10397564	Not Available	623	Open in IMG/M
3300018061\|Ga0184619_10549508	Not Available	505	Open in IMG/M
3300018066\|Ga0184617_1101903	All Organisms → cellular organisms → Bacteria → Terrabacteria group	803	Open in IMG/M
3300018073\|Ga0184624_10324520	Not Available	689	Open in IMG/M
3300018081\|Ga0184625_10136138	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300018466\|Ga0190268_10030245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1908	Open in IMG/M
3300018466\|Ga0190268_11869726	Not Available	545	Open in IMG/M
3300018466\|Ga0190268_12312462	Not Available	507	Open in IMG/M
3300018466\|Ga0190268_12321397	Not Available	506	Open in IMG/M
3300018466\|Ga0190268_12321850	Not Available	506	Open in IMG/M
3300018469\|Ga0190270_13098155	Not Available	526	Open in IMG/M
3300019259\|Ga0184646_1437362	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300019377\|Ga0190264_11633758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Propioniciclava	569	Open in IMG/M
3300019767\|Ga0190267_11156556	Not Available	562	Open in IMG/M
3300019767\|Ga0190267_11254572	Not Available	549	Open in IMG/M
3300020005\|Ga0193697_1105849	Not Available	667	Open in IMG/M
3300020016\|Ga0193696_1133438	Not Available	623	Open in IMG/M
3300021078\|Ga0210381_10015880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1922	Open in IMG/M
3300022756\|Ga0222622_10260025	Not Available	1179	Open in IMG/M
3300027718\|Ga0209795_10117902	Not Available	755	Open in IMG/M
3300027809\|Ga0209574_10230368	Not Available	606	Open in IMG/M
3300028705\|Ga0307276_10024669	Not Available	1207	Open in IMG/M
3300028711\|Ga0307293_10130587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300028716\|Ga0307311_10180478	Not Available	615	Open in IMG/M
3300028717\|Ga0307298_10153805	Not Available	669	Open in IMG/M
3300028719\|Ga0307301_10134394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	793	Open in IMG/M
3300028719\|Ga0307301_10206915	Not Available	637	Open in IMG/M
3300028720\|Ga0307317_10208966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	658	Open in IMG/M
3300028722\|Ga0307319_10030823	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300028722\|Ga0307319_10129438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	815	Open in IMG/M
3300028744\|Ga0307318_10108757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	941	Open in IMG/M
3300028754\|Ga0307297_10289449	Not Available	590	Open in IMG/M
3300028755\|Ga0307316_10116428	Not Available	940	Open in IMG/M
3300028771\|Ga0307320_10190568	Not Available	800	Open in IMG/M
3300028787\|Ga0307323_10118981	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300028796\|Ga0307287_10328327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300028811\|Ga0307292_10068664	Not Available	1353	Open in IMG/M
3300028811\|Ga0307292_10170534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	886	Open in IMG/M
3300028814\|Ga0307302_10368034	Not Available	709	Open in IMG/M
3300028819\|Ga0307296_10021325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces alboflavus	3409	Open in IMG/M
3300028824\|Ga0307310_10136994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1120	Open in IMG/M
3300028828\|Ga0307312_10754491	Not Available	645	Open in IMG/M
3300028876\|Ga0307286_10036598	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Jettenia	1634	Open in IMG/M
3300028876\|Ga0307286_10217393	Not Available	696	Open in IMG/M
3300028881\|Ga0307277_10088304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1305	Open in IMG/M
3300030510\|Ga0268243_1084699	Not Available	722	Open in IMG/M
3300030510\|Ga0268243_1196919	Not Available	501	Open in IMG/M
3300031092\|Ga0308204_10019259	Not Available	1384	Open in IMG/M
3300031092\|Ga0308204_10051509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1003	Open in IMG/M
3300031092\|Ga0308204_10072825	All Organisms → cellular organisms → Bacteria → Terrabacteria group	890	Open in IMG/M
3300031548\|Ga0307408_100280219	Not Available	1388	Open in IMG/M
3300031731\|Ga0307405_10010410	All Organisms → cellular organisms → Bacteria	4817	Open in IMG/M
3300031731\|Ga0307405_10125870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1762	Open in IMG/M
3300031731\|Ga0307405_10495421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	978	Open in IMG/M
3300031824\|Ga0307413_10066166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2254	Open in IMG/M
3300031824\|Ga0307413_11542067	All Organisms → cellular organisms → Bacteria → Terrabacteria group	588	Open in IMG/M
3300031852\|Ga0307410_10247888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1383	Open in IMG/M
3300031852\|Ga0307410_10261647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1349	Open in IMG/M
3300031852\|Ga0307410_10272998	Not Available	1323	Open in IMG/M
3300031901\|Ga0307406_11726592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	555	Open in IMG/M
3300031903\|Ga0307407_11329729	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031911\|Ga0307412_10770675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	832	Open in IMG/M
3300031911\|Ga0307412_11494242	All Organisms → cellular organisms → Bacteria → Terrabacteria group	614	Open in IMG/M
3300031995\|Ga0307409_101009653	Not Available	850	Open in IMG/M
3300031995\|Ga0307409_101234477	Not Available	771	Open in IMG/M
3300031995\|Ga0307409_102258820	Not Available	573	Open in IMG/M
3300032002\|Ga0307416_101708915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	734	Open in IMG/M
3300032002\|Ga0307416_103853296	Not Available	502	Open in IMG/M
3300032004\|Ga0307414_10078006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2413	Open in IMG/M
3300032004\|Ga0307414_10169331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1744	Open in IMG/M
3300032005\|Ga0307411_10868369	Not Available	799	Open in IMG/M
3300032126\|Ga0307415_101042877	Not Available	762	Open in IMG/M
3300032126\|Ga0307415_101351802	Not Available	676	Open in IMG/M
3300032126\|Ga0307415_102249499	Not Available	534	Open in IMG/M
3300034131\|Ga0334911_059652	Not Available	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.43%
Host-Associated	Host-Associated	29.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.61%
Plants	Host-Associated → Plants	29.57%
Aquatic	Environmental → Aquatic	7.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.61%
Sediment	Environmental → Aquatic → Sediment	6.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.61%
Phylloplane	Host-Associated → Plants → Phylloplane	2.61%
Freshwater	Environmental → Aquatic → Freshwater	1.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.74%
Roots	Host-Associated → Plants → Roots	1.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.09%
Loam	Environmental → Terrestrial → Soil → Loam	2.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.61%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.74%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.61%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.74%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	20.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	17.39%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.61%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.74%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.74%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.87%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.87%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_103307032	3300000443	Soil	ERLRGAARSSTRRLADVAKDVTGGQPLPTNPRKLAKGRAEQAKDRETTT*
F12B_112765551	3300000443	Soil	ARSSTRRLADVAREVTAGQPLPADRRDLAKGRAEQAKDRETGSS*
F14TC_1014867991	3300000559	Soil	RLRGAARSSTRRLADVAKDVTAGQPLPTNPRKLARGRAEQAKDRETTT*
JGI10216J12902_1116204532	3300000956	Soil	LRGAARSSTRRLADVARDVTGGQILPPNRRDLAKGRAEQAKDRETGS*
JGI10216J12902_1154063231	3300000956	Soil	LSACGGAARSSTRRLADVAREVTDGQPLPADRRKLARARAGQAKDRETTT*
JGI10216J12902_1254496453	3300000956	Soil	ARSSTRRLADVARDVTGGQPLPTNRRDLAMGRAEQAKDGETTA*
JGI25406J46586_101997211	3300003203	Tabebuia Heterophylla Rhizosphere	GAARSSTRRLADVAKDVTGGQPLPTNRRDLAKGRAEQAKDGETTA*
JGI25407J50210_100353841	3300003373	Tabebuia Heterophylla Rhizosphere	GRERLDAQTAFERLRGAARSSTRRLADVAKDVTEGQKLPADRRKLARARAGQAKDPQDAT
Ga0063356_1013020661	3300004463	Arabidopsis Thaliana Rhizosphere	AFERLRGAARSSTRRLADVARDVTGGQILPPNRRDLAKGRAEQAKDRETGS*
Ga0063356_1039072442	3300004463	Arabidopsis Thaliana Rhizosphere	AFERLRGAARSSTRRLADVARDVTAGQPLPSDRRKLARGRAEQAKDRETNT*
Ga0058697_104411861	3300005562	Agave	LDAQAAFERLRGAARSSTRRLADVARDVTGGQPLPANRRDLAKGRAGQAKDRETTT*
Ga0081538_100958744	3300005981	Tabebuia Heterophylla Rhizosphere	VDAQAAFERLGAAARSSTRRLADVAKEVTDGQPLPTDRRRLAKPRAEQAKNRELGH*
Ga0075417_104819502	3300006049	Populus Rhizosphere	RSSTRRLADVARDVTGGQPLPTNRRDLAKGRAEQAKNRETTT*
Ga0105249_135801281	3300009553	Switchgrass Rhizosphere	REDLDAQAAFERLRGAARSSTRRLADVARDVTGGQPLPANPRDLAKGRAEQAKDRETT*
Ga0126307_109429851	3300009789	Serpentine Soil	HLDAQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLARGRAGQAKEREHGS*
Ga0105070_10315822	3300009815	Groundwater Sand	AARSSTRRLADVARDVTGGQPLPANPRDLARGRAEQAKDRETTT*
Ga0126313_100633121	3300009840	Serpentine Soil	FERLRGAARSSTRRLADVAKDVTGGQPLPTNRRDLAKGRAGQAKARENGS*
Ga0126313_102347824	3300009840	Serpentine Soil	LRRAARSSARRLADVAKDVTGGQPLPASGRDRARARAGQAKDRDTAT*
Ga0126313_117280001	3300009840	Serpentine Soil	DLDAQTAFERLRGAARSSTRRLADVARDVTAGQPLPANPGDLARGRAEQAKDRETTT*
Ga0126313_117792091	3300009840	Serpentine Soil	AFERLRGAARSSTRRLADVARDVTAGQPLPTDRRKLARGRAEQAKERETGS*
Ga0126305_109199101	3300010036	Serpentine Soil	HTAFERLRGVARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKARENGS*
Ga0126304_106252352	3300010037	Serpentine Soil	AARNSTRRLADVAKDVTGGQPLPASGRARARARAGQAKNRETAT*
Ga0126315_100986632	3300010038	Serpentine Soil	TAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKARENGS*
Ga0126315_111886561	3300010038	Serpentine Soil	RAARNSTRRLADVAKDVTGGQPLPASGRARARARAKQAKDRETTT*
Ga0126308_109715651	3300010040	Serpentine Soil	RSSTRRLADVAKDVTAGQPLPTNRQKLARGRAGQAKDRETGS*
Ga0126312_102613041	3300010041	Serpentine Soil	LDAQAAFERLRGAARSSTRRLADVARDVTAGQALPADRRKLARGRAEQAKDRATGS*
Ga0126312_111059791	3300010041	Serpentine Soil	REELDAQAAFERLRRVARSSTRRLADVARDVTDGQPLPTSGRERARARAGQAKDRETAT*
Ga0126314_108339831	3300010042	Serpentine Soil	QAAFERLRGAARSSTRRLADVARDVTAGQALPADRRKLARGRAEQAKDRETGS*
Ga0126314_110753251	3300010042	Serpentine Soil	AHTAFERLRGVARSSTRRLADVAKDVTAGQPLPTNRQKLARGRAGQAKDRETGS*
Ga0126314_111329191	3300010042	Serpentine Soil	ELDAQAAFERLRGAARSSTRRLADVAKDVTDGQSLPADRRKLARGRAGQAKERKTGS*
Ga0126310_105658322	3300010044	Serpentine Soil	EQVDAQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRQKLARGRAGQAKDRETGS*
Ga0126311_114776172	3300010045	Serpentine Soil	LADRAGQGGADGRERLDAQTAFERLRGAARSSTRRLADVARDVTVGQPLPTNRRELARAVASQAKDRQTGT*
Ga0126306_100029499	3300010166	Serpentine Soil	REQIDAQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKERANGS*
Ga0126306_104121932	3300010166	Serpentine Soil	AFERLRRAARSSTRRLADVAREVTGGQPLPASGRARARARAGQAKDRETTT*
Ga0126306_106646603	3300010166	Serpentine Soil	FERLRGAARSSTRRLADVARDVTAGQPLPTNRRDLAKGRAGQAKEREHGS*
Ga0137425_11843372	3300011422	Soil	RSSTRRLADVAKDVTAGQSLPTNRRDLAKGRAGQAKERENGS*
Ga0120192_100913952	3300012021	Terrestrial	GAARSSTRRLADVAKDVTGGQPLPADRRKLARGRAEQAKDREATT*
Ga0162653_1000096122	3300012937	Soil	MGREHVDAQAAFERLRGAARSSTRRLADVAKDVTVGQPLPTNRRDRARGRAEQAKDRETNT*
Ga0162652_1000110142	3300012941	Soil	LDAQTAFERLRGAARSSTRRLADVARDVTGGQPLPTNRRDLAKGRAEQAKDRETNT*
Ga0182000_101068502	3300014487	Soil	ERLRGAARSSTRRLADVAKDVTDGQPLPTNRRDLAKGRAGQAKARETGS*
Ga0184619_103975642	3300018061	Groundwater Sediment	GAARSSTRRLADVARDVTGGQPLPASGRARARARAEQAKDRETTT
Ga0184619_105495081	3300018061	Groundwater Sediment	AFERLRGAARSSTRRLADVAKDVTAGQPLPSNRRDLARGRAGQAKERENGS
Ga0184617_11019032	3300018066	Groundwater Sediment	RLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLARGRAGQVKDRETAT
Ga0184624_103245201	3300018073	Groundwater Sediment	DLDAQAAFERLRGAARSSTRRLADVARDVTGGQPLPTNRRDLAKGRAEQAKNRETTT
Ga0184625_101361381	3300018081	Groundwater Sediment	MVDAQAAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDRARGRAEQAKDRETNT
Ga0190268_100302451	3300018466	Soil	DAQAAFERLRGAARSSTRRLADVARDVTGGQPLPTNPRKLARGRAEQAQNRETTT
Ga0190268_118697261	3300018466	Soil	MGREELDAQAAFERLRGAARSSTRRLADVAKEVTAGQPLPADRRKLARGRAGQAKDRETA
Ga0190268_123124621	3300018466	Soil	RGAARSSTRRLADVARDVTAGQPLPTNPRELATGRAEQAKNRETTA
Ga0190268_123213971	3300018466	Soil	DAQTAFERLRGAARSSTRRLADVARDVTAGQPLPTNPRELAKGRAEQAKDRQTT
Ga0190268_123218501	3300018466	Soil	GREQVDAQAAFERLRGAARSSTRRLADVAKDVTGGQPLPANQRKLAKGRAEQAKNRETVT
Ga0190270_130981552	3300018469	Soil	ERLDAQAAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLARGRAGQAKDRETAT
Ga0184646_14373622	3300019259	Groundwater Sediment	GAARSSTRRLADVARDVTAGHPLPANRRDRARGRAEQAKDRETAT
Ga0190264_116337581	3300019377	Soil	TAFERLRGAARSSTRRLADVARDVTRGQPLPANRNDLARGRAEQAKDRETAS
Ga0190267_111565562	3300019767	Soil	AAFERLRGAARSSTRRLADVARDVTAGQPLPANRRKLARGRAEQAKDRETAS
Ga0190267_112545721	3300019767	Soil	TAFERLRGAARSSTRRLADVARDVTGGQPLPTNPRKLAKGRAEQAKNRETST
Ga0193697_11058492	3300020005	Soil	RGAARSSTRRLADVARDVTAGQPLPSDRRDLVKGRAEQAKVRESRP
Ga0193696_11334382	3300020016	Soil	AAFERLRGAARSSTRRLADVARDVTGGQPLPANRRELAKGRAEQAKDRETTT
Ga0210381_100158803	3300021078	Groundwater Sediment	AQAAFERLRGAARSSTRRLADVAKDVTGGQPLPTNRRKLAKGRAEQAKDGETTA
Ga0222622_102600251	3300022756	Groundwater Sediment	LDAQTAFERLRGAARSSTRRLADVAKDVTAGQPLPPTNRRDLAKGRAGQAKARENGS
Ga0209795_101179023	3300027718	Agave	ARSSTRRLADVARDVTGGQPLPTNPRKLARGRAEQAKDRETTT
Ga0209574_102303682	3300027809	Agave	ERLRGAARSSTRRLADVARDVTAGQPLPANRRKLARGRAEQAKDRETAS
Ga0307276_100246692	3300028705	Soil	QAAFERLRGAARSSTRRLADVAREVTAGQPLPTNRRDLAKGRAAQVKARENGS
Ga0307293_101305871	3300028711	Soil	AARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKARENGS
Ga0307311_101804781	3300028716	Soil	ERLRGAARSSTRRLADVARDVTGGQPLPTNRRELAKGRAEQAKDGETTA
Ga0307298_101538051	3300028717	Soil	AFERLRGAARSSTRRLADVAKDVTGGQPLPTNRRKLAKGRAEQAKDGETTA
Ga0307301_101343941	3300028719	Soil	RLRGAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKDRETNT
Ga0307301_102069151	3300028719	Soil	GDAGLERLRGAARSSTRRLADVARDVTGGQPLPASGRDRARAEQAKARENDS
Ga0307317_102089663	3300028720	Soil	AQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKARENGS
Ga0307319_100308233	3300028722	Soil	DAQTAIERLRGAARASTRRLADVARDVTAGQPLPTDRRDLANGHAAQAKSRETRT
Ga0307319_101294381	3300028722	Soil	VDAQAAFERLRGAARSSTRRLADVAKDVTGGQPLPTNRRELAKGRAEQAKDRETTA
Ga0307318_101087571	3300028744	Soil	REQVDAQAAFERLRGAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKNRETVT
Ga0307297_102894491	3300028754	Soil	FERLRGAARSSTRRLADVAKDVTDGQPLPTNRRDLAKGRAGQAKERETRS
Ga0307316_101164281	3300028755	Soil	GAARSSTRRLADVAKDVTDGQPLPTNRRDLAKGRAGQAKERETRS
Ga0307320_101905681	3300028771	Soil	RGAARSSTRRLADVARDVTDGQPLPTNRRDLAKGRAGQAKARENDS
Ga0307323_101189811	3300028787	Soil	ERLRGAARSSTRRLADVARDVTGGQPLPASGRDRARAEQAKARENDS
Ga0307287_103283272	3300028796	Soil	LRGAARASTRRLADVARDVTAGQALPTNRHDLAKGHAAKAKSRETRS
Ga0307292_100686641	3300028811	Soil	RGAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKDGETTA
Ga0307292_101705341	3300028811	Soil	LRGAARSSTRRLADVARDVTDGQPLPTNRRDLAKGRAGQAKARENGS
Ga0307302_103680341	3300028814	Soil	AQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKARETRS
Ga0307296_100213255	3300028819	Soil	DLDAQAAFERLRGAARSSTRRLADVARDVTGGQPLPANRRELAKGRAEQAKNRETAT
Ga0307310_101369942	3300028824	Soil	GAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKDGETTA
Ga0307312_107544911	3300028828	Soil	REQVDAQAAFERLRGAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKDGETTA
Ga0307286_100365981	3300028876	Soil	DVRRYQLGDAGLERLRGAARSSTRRLADVARDVTGGQPLPASGRDRARAEQAKARENDS
Ga0307286_102173932	3300028876	Soil	FERLRGAARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKDRETVT
Ga0307277_100883041	3300028881	Soil	LRGAARSSTRRLADVAKDVTAGQPLPADRRTLARGRAEQAKDWESGS
Ga0268243_10846991	3300030510	Soil	FERLRGAARSSTRRLADVAREVTDGEPLPADRRRLARARAGQAKDRELGS
Ga0268243_11969191	3300030510	Soil	AQTAVQRLRGAARSSTRRLADLAKDVTAGQPLPTNGRDLAKGRAGQAKARETRS
Ga0308204_100192591	3300031092	Soil	HMDAQTAFERLRGAARSSTRRLADVAKDVTGGQPLPTNRRKLAKGRAEQAKDGETTA
Ga0308204_100515091	3300031092	Soil	ARSSTRRLADVARDVTAGQPMPADRRKLARGRAGQAKDRENGS
Ga0308204_100728252	3300031092	Soil	REHLDAQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLARGRAGQVKDRETAT
Ga0307408_1002802191	3300031548	Rhizosphere	LDAQAAFERLRGAARSSTRRLADVAREVTAGQPLPADRQELAKARARQAKDRELGG
Ga0307405_100104101	3300031731	Rhizosphere	TRRLADVAKDVTDGQPLPTNRRDLAKGRAGQAKERETRSYHGGNQMG
Ga0307405_101258701	3300031731	Rhizosphere	ARSSTRRLADVAKDVTAGQPLPSNRRDLAKGRAEQAKERETSSY
Ga0307405_104954212	3300031731	Rhizosphere	RLRGAARSSTRRLADVAKDVTGGQPLPTNRRKLAKGRAEQAKDGETTT
Ga0307413_100661664	3300031824	Rhizosphere	REHLDAQTAFERLRGAARSSTRRLADVAKDVTDGQPLPTNRRDLAKGRAGQAKERETRSYHGGNQMG
Ga0307413_115420672	3300031824	Rhizosphere	REELDAQAAFERLRRAARSSTRRLADVARDVTGGQPLPASGRARARARAEQAKDRETAT
Ga0307410_102478881	3300031852	Rhizosphere	ARSSTRRLADVAKDVTGGQPLPANRRKLAKGRAEQAKNRETAT
Ga0307410_102616471	3300031852	Rhizosphere	AARSSTRRLADVAKDVTGGQPLPADRQKLAKARTGQAKDRETGSQR
Ga0307410_102729982	3300031852	Rhizosphere	GREQLDAQAAFERLRGAARSSTRRLADVARDVTAGQPLPADRRRLAKARARQAKDRELGG
Ga0307406_117265921	3300031901	Rhizosphere	RLSGCGGGAARAARRLADVARDVTGGQPLPASGRARARARAKQAKDRETTT
Ga0307407_113297292	3300031903	Rhizosphere	AFERLRRAARNSTRRLADVAKDVTGGQPLPASGRARARARAEQAKNRETAT
Ga0307412_107706751	3300031911	Rhizosphere	RLRRAARSSTRRLADVAKDVTGGQPLPADRQKLAKARTGQANDRETGSQR
Ga0307412_114942422	3300031911	Rhizosphere	RLRRAARSSTRRLADVARDVTGGQPLPASGRARARARAEQAKDRETAT
Ga0307409_1010096532	3300031995	Rhizosphere	ERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLARGRAGQAKDRETAT
Ga0307409_1012344771	3300031995	Rhizosphere	LDAQAAFERLRRAARSSTRRLADVAKDVTDGQRLPTNRRKLARGRAEQAKDRETDS
Ga0307409_1022588201	3300031995	Rhizosphere	AQAAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRKLARGRAEHAKDRETST
Ga0307416_1017089152	3300032002	Rhizosphere	IDAQTAFVRLRRAARSSTRRLADVARDVTDGQPLPTNRRKLARGRAEQAKDRETTA
Ga0307416_1038532961	3300032002	Rhizosphere	EELDAQAAFERLRRAARSSTRRLADVAKDVTGGQPLPASERDRARARAEQAKDRETIT
Ga0307414_100780064	3300032004	Rhizosphere	GAARSSTRRLADVAKDVTDGQPLPTNRRDLAKGRAGQAKERETRSYHGGNQMG
Ga0307414_101693311	3300032004	Rhizosphere	ERIDAQTAFERLRGAARSSTRRLADVARDVTGGQPLPTNRRKLAKGRAEQARNRETAA
Ga0307411_108683692	3300032005	Rhizosphere	AQAAFERLRGAARSSTRRLVDVAREVTAGQPLPADRRRLAKARARQAKDRELGG
Ga0307415_1010428772	3300032126	Rhizosphere	FERLRGAARSSTRRLADVAKDVTGGQPLPASGHARARARAEQAKDRETTT
Ga0307415_1013518021	3300032126	Rhizosphere	ENLDAQAAFERLRGAARSSTRRLADVARDVTGGQPLPTNRRDLARGRAEQAKNHQTGT
Ga0307415_1022494991	3300032126	Rhizosphere	VDAQTAFERLRGAARSSTRRLADVAKDVTAGQPLPTNRRDLAKGRAGQAKARENGS
Ga0334911_059652_351_536	3300034131	Sub-Biocrust Soil	MGREQVDAQAAFERLRGAARSSTRRLADVAKDVTGGQPLPASGRDRVRARAGQAKDRESG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079482

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences