Metagenome Family F079623

Basic Information
Family ID	F079623
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	89 residues
Representative Sequence	VDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDKINNSRNANPKKLLNKPNKWLNSKIKDLNRPKKHLQRLRRSI
Number of Associated Samples	35
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.57 %
% of genes near scaffold ends (potentially truncated)	9.57 %
% of genes from short scaffolds (< 2000 bps)	11.30 %
Associated GOLD sequencing projects	33
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Most Common Taxonomy
Group	Unclassified (92.174 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (43.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (45.217 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 13.08% Coil/Unstructured: 66.92%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00078	RVT_1	1.74

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
All Organisms	root	All Organisms	7.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
cellular organisms	root	All Organisms → cellular organisms	7.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	7.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Thalassiosirophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Thalassiosirales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Thalassiosiraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Thalassiosira	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	5.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.17 %
Thalassiosira pseudonana	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	4.35 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007559\|Ga0102828_1204029	Not Available	508	Open in IMG/M
3300008115\|Ga0114348_1097070	Not Available	659	Open in IMG/M
3300008263\|Ga0114349_1007514	Not Available	5441	Open in IMG/M
3300008263\|Ga0114349_1007642	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	5397	Open in IMG/M
3300008263\|Ga0114349_1146618	Not Available	944	Open in IMG/M
3300008263\|Ga0114349_1208375	All Organisms → cellular organisms → Eukaryota	695	Open in IMG/M
3300008265\|Ga0114361_1019881	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	4517	Open in IMG/M
3300008265\|Ga0114361_1033637	Not Available	1714	Open in IMG/M
3300008265\|Ga0114361_1063465	All Organisms → cellular organisms → Eukaryota	1154	Open in IMG/M
3300008265\|Ga0114361_1074395	All Organisms → cellular organisms → Eukaryota	1055	Open in IMG/M
3300033984\|Ga0334989_0026660	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	3091	Open in IMG/M
3300033984\|Ga0334989_0032142	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	2833	Open in IMG/M
3300033984\|Ga0334989_0035298	Not Available	2711	Open in IMG/M
3300033984\|Ga0334989_0073093	Not Available	1894	Open in IMG/M
3300033984\|Ga0334989_0309367	Not Available	838	Open in IMG/M
3300033984\|Ga0334989_0348463	Not Available	775	Open in IMG/M
3300033984\|Ga0334989_0351777	Not Available	770	Open in IMG/M
3300034167\|Ga0335017_0008685	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	5574	Open in IMG/M
3300034167\|Ga0335017_0030736	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	3144	Open in IMG/M
3300034167\|Ga0335017_0563882	Not Available	594	Open in IMG/M
3300034168\|Ga0335061_0100778	Not Available	1539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	86.09%
Marine	Environmental → Aquatic → Marine	13.91%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	80.00%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic	6.09%
Coastal	Environmental → Aquatic → Marine → Coastal	6.09%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	78.26%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	7.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	6.09%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.48%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.74%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	40.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	38.26%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	7.83%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.48%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	3.48%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.61%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.74%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	1.74%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352003	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300002390	Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion	Environmental	Open in IMG/M
3300007543	Estuarine microbial communities from the Columbia River estuary - metaG 1370B-3	Environmental	Open in IMG/M
3300007552	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007561	Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3	Environmental	Open in IMG/M
3300007636	Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3	Environmental	Open in IMG/M
3300007649	Estuarine microbial communities from the Columbia River estuary - metaG 1560A-3	Environmental	Open in IMG/M
3300007860	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372A_3um	Environmental	Open in IMG/M
3300007861	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um	Environmental	Open in IMG/M
3300007955	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373B_3.0um	Environmental	Open in IMG/M
3300008115	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-100-LTR	Environmental	Open in IMG/M
3300008263	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-53-LTR	Environmental	Open in IMG/M
3300008265	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0126-100-LTR	Environmental	Open in IMG/M
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009079	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741	Environmental	Open in IMG/M
3300011009	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_DNA	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020502	Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020505	Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021140	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300033984	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Mar2001-rr0030	Environmental	Open in IMG/M
3300033995	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056	Environmental	Open in IMG/M
3300034019	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049	Environmental	Open in IMG/M
3300034022	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058	Environmental	Open in IMG/M
3300034064	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054	Environmental	Open in IMG/M
3300034105	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127	Environmental	Open in IMG/M
3300034116	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR	Environmental	Open in IMG/M
3300034167	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082	Environmental	Open in IMG/M
3300034168	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183	Environmental	Open in IMG/M
3300034355	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135	Environmental	Open in IMG/M
3300034357	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2199911099	2199352003	Freshwater	TRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKKKALNRPNKHLKRLRRSI
B570J14230_100484021	3300001282	Freshwater	GVHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKIKALNRPKKHLKRLRRSI*
B570J29645_1072072	3300002390	Freshwater	DTIRANEIAIENPETGKVTXVVTMLKVFGDKINNSRNANPKKLLNMPNKWLNLKKKALNRPNKHLKRLRRSI*
Ga0102853_10304202	3300007543	Estuarine	STDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDNTRNSRNANPGKLLNKPNKRLNSKKKHLNRALSVHTNSMRTLATSARD*
Ga0102818_11032961	3300007552	Estuarine	TGRPVDKRLKIDKPSGVHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANLKKLLNKPNKWLNSKK*
Ga0102828_12040292	3300007559	Estuarine	VSGSTGKLVDKRLKIDQPSGIHLESTDTHPIKATKLALDTIRANEIAIENPETGKVTAVFALLKIFGDKFGNSPNANPKKLLNKPNKRLNLKKKHLHRPL
Ga0102914_11991761	3300007561	Estuarine	MGSQVDKHLKLEQPTGIDLKSTDTRPIKATKLALDTNRANEIAIENSKTGKVTAVVAILKVFGDNTRNSRNANPGEVLNKPNK
Ga0102856_10548831	3300007636	Estuarine	NGSSSTGRPVDKRLKIDRPSGVHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKIKNSRNANPKSC*
Ga0102912_11884721	3300007649	Estuarine	MSGPVDKRLTLDQPSGIYLKSTDTRPIKATKLALDVIRANEIAKENSKTGKVTAVVAILKVFGDKSNSRNSKLLIKPNKWLNLKKKGLNQSNKHLN*
Ga0105735_10891821	3300007860	Estuary Water	IAIENPETGKVTAVVTMLKVFGDKINNSRNTNPKKLLNKPNKWLNSKIKALNRPKKHLQRLRRSI*
Ga0105736_10629581	3300007861	Estuary Water	PVDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENPKTGKVTAVVTILKVFRDKINNSRNANPKKLLNKPNKWLNLKK*
Ga0105736_10852231	3300007861	Estuary Water	DTIRANEIAIENSKTGKVTAIIAILKVFGDNTYNSRSANPGKLLNKRNKRLNSKKKRLNRPLKCHNRLNESVY*
Ga0105740_10612031	3300007955	Estuary Water	RSSSTGRPVDKRLKIDQPSGIHLDSTDTRPIKTAKLALDTIRANEIAIENPKTGKVTAVVTILKVFRDKINNSRNANPKKLLNKPNKWLNLKK*
Ga0114348_10970702	3300008115	Freshwater, Plankton	VDKRLKLDQPPGIYLKSTDTRPIKATKLALDTIRANEIALENSKTGKVTAVVAILKVFGGNTRNSRNANPGKLLKSPVTVEKPRRTP*
Ga0114349_10075144	3300008263	Freshwater, Plankton	MGNPVDKCLKLIQPLCIDLKSTDTRPIKATELALDTIMANEIAIENAKTGKVTAVVAILKVFGDNFTNSRNANHQIKGYIQR*
Ga0114349_10076429	3300008263	Freshwater, Plankton	MGPVARSTSGPVDKRLKLEQPLGIYLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDNTCNSRDANPGKLLNKPNKRLNSKKKHLN*
Ga0114349_10766091	3300008263	Freshwater, Plankton	KRLKLEQPNGIHLISTDTRPIKATKLAPETSRANEIAIENPETGKVTAVVTMLKVFGDKNNNSRNANLKKLLNKPNKWLNSKIKALNRPKKHLKRLSRSI*
Ga0114349_10865331	3300008263	Freshwater, Plankton	TRPIKATKLALDTIRANEIAIENSKTGKVTAVVGILKVFGDDTRNSRSANPGKLLNKPNNRLNLKKEALNRPKKHLKRLRRSI*
Ga0114349_11061781	3300008263	Freshwater, Plankton	EIAIENPETGKVPAVVTMLKVFGDKINNSRYANPKKLLSKPNKWLNSKKKALNRPKKHLKRLRRSI*
Ga0114349_11387662	3300008263	Freshwater, Plankton	SGPVDKHLKIEQPLGIHLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAIVAILKVSGDYTRNSRNANPGKLLNNPNNRLNLKKKALNRPKKHLKRLRRSI*
Ga0114349_11437162	3300008263	Freshwater, Plankton	LKLDQPSGIYLKSTDTHPIKATKLALDTIRANEIAIENSKTGKVTAIDAILKVFGDNTHNSRSANPGKLLNKPNKRLNLKP*
Ga0114349_11466182	3300008263	Freshwater, Plankton	MSVPVEKRLKLDQPPGINLESTDTRPIKATKLALDTFRANEIAIENSKTGKVTAVVAILKVFGDNTRNSRNASPGKLLNKPNKRLNSKKKHLNRS*
Ga0114349_11842072	3300008263	Freshwater, Plankton	NEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKIKALNSPKKHLQRLRRSI*
Ga0114349_11878792	3300008263	Freshwater, Plankton	MSGPVDKHLKLEQPSGIHLETTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDNTRNSRNANPGKLLNKPNNRLNSKKK
Ga0114349_11899551	3300008263	Freshwater, Plankton	DKRLKLEQPSGIHLKSTDTRPIKATKLAIDTIRANETAIENSKTGKVTAVVAILKVFGDNTRNSLSANPGKLLNKPNKSS*
Ga0114349_11946991	3300008263	Freshwater, Plankton	GVQLKSTDTRPIKATKLALDTIRAIEIAIENSKTGKVTAVVAILKVFGDNNTHNSRSTNPGKLLNKPNKWLYSKKQALNRPKKHLKRLRRSI*
Ga0114349_12083752	3300008263	Freshwater, Plankton	PSGIHLKSTDTCPIKATKLALDTIRANEIAIENSITGKVTAVVAILKVCGEYIHNSRNVDPGKLLNKPNKRLNLKKKHLIRS*
Ga0114349_12144442	3300008263	Freshwater, Plankton	TSGPVDKRLKLDQPPGIYLKSTDTRPIKATKLALDTIRANEIALENSKTGKVTAVVAILNVFGGNTRNSRNANPGKLLNKPNKRLNSME*
Ga0114349_12505182	3300008263	Freshwater, Plankton	HPNKSTKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPGKLLNKPYKRLNSKKKAQNRPKKHLKRLCRSI*
Ga0114349_12605691	3300008263	Freshwater, Plankton	PPGIYLKSTDTRPIKATKLAPDTIRANEIALENSKTGKVTAVVAILKVFGDNTRNSRNANPGKLLNRPNKRLNSKKSI*
Ga0114349_12812481	3300008263	Freshwater, Plankton	TDTRPIKATKLALDTIRANEITIENSKTGKVTAVVAILKVFGDNTHNSRSANPGKLLNKPNKRLNLKKKALNRPKKHLKRLRWSI*
Ga0114349_12862102	3300008263	Freshwater, Plankton	KRIKLVQPSGIHLKSTDTRSIKATKLALDTIRANEIAIKNTKTGKVTAIVAILKVFGDNIRNSRNANPGKLLNKPNKRLNSKKKHLDRSLKHTTISARALATPARD*
Ga0114361_10198812	3300008265	Freshwater, Plankton	LKSIDTRPIKATKLALDTIRANEIAIENPKTGKVTAVVTMLKIFGGDKINNSRNTNPKKLFNKPNNWLNFKKKALNRPKKHLKRLRRSI*
Ga0114361_10269083	3300008265	Freshwater, Plankton	GSTSGPVDKRLKIEQPSGIHLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGGNTRNSRNANPGKLLKKAK*
Ga0114361_10336372	3300008265	Freshwater, Plankton	VIPTVTRIMGPVARSTSGPVDKRLKLEQPLGIYLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDNTCNSRDANPGKLLNKPNKRLNSKKKHLN*
Ga0114361_10382901	3300008265	Freshwater, Plankton	INLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDNTRNSRNANSGKLLNKPNKRLNLKKKHLHRSLTGIRL*
Ga0114361_10498932	3300008265	Freshwater, Plankton	MGPVARVDQYKRLKLEQPLGIHLESTDTHPIKATKLALDTIRAYEIAIENSETGKVTAVVAILKVFGDNSRNSRSANPGELLNKPNKRLNSKKKHLNRSLKRPNKLNKSV*
Ga0114361_10634652	3300008265	Freshwater, Plankton	MGRSVEKRIKLVQPSGIHLESTDTRPIKATKLALDTIKANEIAIENSKTGKVTAVVTILKVFGENIRKPWNANPGKLLN*
Ga0114361_10743951	3300008265	Freshwater, Plankton	LGIYLESTDTRPIKATKLALDTIRANEITIENSETGKVTAVVAILKVFGDNTRNSRSANPGKLLNKPNKRLNLKKKHLNRSLKRPNELNES
Ga0114361_11105271	3300008265	Freshwater, Plankton	MSTDTHPNKSTKLALDTTRANEIAIKNPETGKVTAVVTMRKVFGDKINNSRNANPKKLLNKPNNWLNSKKKALNRPKKHLKRLRRSI*
Ga0114361_11124591	3300008265	Freshwater, Plankton	MSSDTHPNKSTKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNDNPKKLFNKPNNWLNSKKKALNRPKKHLKRFHRSI*
Ga0114361_11165521	3300008265	Freshwater, Plankton	KRLKIEQPSGIHLESTDTRPIKATKLALDTIRANEIAIENSKTGKVTAIVAILKVSGDYTRNSRSANPGKLLNNPNNRLNLKKKALNRPKKHLKRLRRSI*
Ga0114361_11307182	3300008265	Freshwater, Plankton	IRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKIKALNSPKKHLQRLRRSI*
Ga0114361_11348092	3300008265	Freshwater, Plankton	MGRPVDKRIKLVQPSGIHLKSTDTRSIKATKLALDTIRANEIAIKNTKTGKVTAIVAILKVFGDNIRNSRNANPGKLLNKPNKRLNSKKKHLDRSLKHTTISARALATPARD*
Ga0114361_11431061	3300008265	Freshwater, Plankton	KLEQPSGVQLKSTDTRPIKATKLALDTIGANEIAIENSKTGKVTAVVAILKVFGDNTRNSRSANPGKLLNKPNKRLNSKKKALNRPKKHLKRLRRSI*
Ga0114361_11510841	3300008265	Freshwater, Plankton	SPVDKRLKLDKPPGIYLKSTDTRPIKATKLALDTIRANEIAIENSKTEKVTAIVAILKVFGDNTCNSRSANPRKLLNKPNKRLNSKKKQL*
Ga0114361_11537721	3300008265	Freshwater, Plankton	KSTKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKNNNSRNANLKKLLNKPNKWLNSKIKALNRPKKHLKRLSRSI*
Ga0114361_11824421	3300008265	Freshwater, Plankton	KRLKLEQPIGIHLISTDSRPIKAIKLSPETIRVNEIAIENSKTGKVTAVVAILKIFGENSDNSWNANSKKLLNKPNKWLNLKKRL*
Ga0114361_11894431	3300008265	Freshwater, Plankton	NKSTKLALDTIRANEIAIKNPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKKKALNRPKKHLKRLHRSI*
Ga0114361_11943242	3300008265	Freshwater, Plankton	KLEQPSGVQLKSTDTRPIKATKLALDTIRANEIAIENSKTGKLTVVVTIVKVFRDNTRNSRSANPGILLNKPNKRVVRLNRPKKHLKRLHRSI*
Ga0114361_11997411	3300008265	Freshwater, Plankton	SSTSGPVDKRLKLDQPPGIYLKSTDTRPIKATKLAPDTIRANEIALENSKTGKVTAVVAILKVFGDNTRNSRNANPGKLLNRPNKRLNSKKSI*
Ga0114361_12017941	3300008265	Freshwater, Plankton	QPPGIYLKSTDTRPIKATKLAPDTIRANEIALENPKTGKVTAVVAILKVFGGSTRKSRNANPGKLLNKPNKRLNSKKSI*
Ga0114361_12375912	3300008265	Freshwater, Plankton	MSGPVDKRLTLDQPSGIYLKSTDTRPIKATKLALDTIKANEIAIENSETGKVTAIVAILKVFGDNTRNSRNANPGKLLNKPNKRLNLKKKHLNR
Ga0114361_12399202	3300008265	Freshwater, Plankton	MIRANEIAIENPETGNVTAVVTMLKVFGGNTRNSRNANPGKLLNKPNKRLNSKKKHLNR
Ga0114361_12498151	3300008265	Freshwater, Plankton	PNKSTKLALDTIRANEIAIKNPETGKVTAVVTMLKVLGDKINNSRNADPRRLLNKPNKWLNSNKKALNRPKKHLKRLRRSI*
Ga0114361_12667251	3300008265	Freshwater, Plankton	QLKSTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILNVFGDNTRNSRSANPGKLLNKPNKRLNSKKKALNRPKKHLKRLRRSI*
Ga0114361_12668981	3300008265	Freshwater, Plankton	KLDTESSSTGSLVDKRIKSTYSRPIKATKLALDTIRANEIAIENPKTGKVTAVVTMLKVFGDKINNLQNANPKKLLNKPN*
Ga0114361_12736192	3300008265	Freshwater, Plankton	LKSTDTIPIKATKLALDTIRANEIAIENSKTGNVTAVVAILKVFGDNTRNSLSTNPGKLLSKPNKRLNSKKKALNRPKKHLKRLRRSI*
Ga0114361_12827152	3300008265	Freshwater, Plankton	IKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDYTRNSRSANPGKLLNKPNKWLNSKKKALNRPKKHLKRLHRSI*
Ga0102810_11021191	3300009002	Estuarine	STGSLVDKRIKVEQPSGVQLNYTDTRPIKATKLALDTIKANEIAIENSETGKVSAVMAILLVFGDNTHNSRNANPGKLINSPHMNSYYI*
Ga0102829_11163972	3300009026	Estuarine	LDNGSSSTGSLVDKRIKLEQPSGVQLNSIDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGKNICRKLLNKPNKRLNSKKK
Ga0102814_103887151	3300009079	Estuarine	SWSGSTGLQVDKRFKLEQPTGIDLNSTDTDTCPIKATKLALDAIRANEIAIENSKTGKVTVVVAILKVFGDKSNSRNSNPRKLLIKPNKWLNLKKKDRQKLFYAPYCIV*
Ga0129318_101860872	3300011009	Freshwater To Marine Saline Gradient	LGIDLRSTDTRPIKATKLALDIIRANEITIETSRTGKVTAIVAILKVFESKVSNLRNTNPWEMLNKPILRLNLKKKHL
Ga0129318_102500001	3300011009	Freshwater To Marine Saline Gradient	MKATKLALDTIRANEIAIENSKTGKVTAVVVILKVFGDKIGNSRNVNPGKLLNKPIKRLNSKKKALNRPKKHL*
Ga0129318_103115961	3300011009	Freshwater To Marine Saline Gradient	RNRNKKRNAHPSPRAFNHLMSTDTHPNKCTKLALDTIRANEIAIENTETGKVTAVVTMLKVFGDRINNSRNANPKKLLNKPNNWLNSKK*
Ga0207193_14077901	3300020048	Freshwater Lake Sediment	MGSXLDKRFKLEQPTGIDLISTDTRPIKTTKLDIYVIKANENANENSKRGKVTDVVTILKVCGDKVSNSRSASLSKLLNKPNIRLNPKK
Ga0207193_18626181	3300020048	Freshwater Lake Sediment	LIDKRPKLEKPNLESTDTHPIKATKLALDITRANEIAIETSKTGKVTAVVAILKVLGDEIGNSRNANPGKMLNKPNKWLNSKKKGLHRSSKHLDGFR
Ga0208087_10054612	3300020502	Freshwater	MGSQVDKRLKLEQPTGIDLNSTDTRPIKATKLALDVIRANEIAIENSKTGKVTAVVAILKVFGDKSNSRNSKLLIKPNKWLNSRKKVLN
Ga0208088_10115401	3300020505	Freshwater	EERIELVQPSGVHLDSTDTRPIKATKLAFDTIRANEIAIENSKTGKVTAVVAILKVFGDIIRNSRNANREKLLNKPNKRLNSKKKRLNRPLKCHNRLNESVY
Ga0214168_10238012	3300021140	Freshwater	PVDKRLNLDQPPGIYLKSTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDKSNSRNSKLLIKPNKWLNLKKKDLN
Ga0209450_112492011	3300027885	Freshwater Lake Sediment	TGRPVDKRLKIDQPSGVHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNAIPKKLLNKPNKWLNSKIKALNRPKKHLQRLRRSI
Ga0334989_0008354_2_262	3300033984	Freshwater	STDTRPIKATKLALDTIRANEIAIENPKTGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKRLNSKIKALHRPKKHLQRLRRSI
Ga0334989_0026660_2760_3089	3300033984	Freshwater	SSSTGRPVDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENTETGKVTAVVTMLKVFGDEINNSRNTNPKKLLNKPNKWLNLKKKALNRPNKHLKRLRRSI
Ga0334989_0032142_1023_1274	3300033984	Freshwater	LEQPSGIHLESTDTRPIKATKLALDIIRANEIAIENSKTGKVTDVVAILKVFGDKFGNSRNANPKKLLNKPNKRLNPKKRHLK
Ga0334989_0035298_2362_2643	3300033984	Freshwater	MGRSVEKCIKLVQPSGVHLDSTDTYWIKATKLALDTIRANEIAIENSKTGKVTAIVAILQVFGDNTHNSWNVNPGKLLNKPNKRLDSKKKMSK
Ga0334989_0073093_58_336	3300033984	Freshwater	LGIHLDSTDTRPIEATKLALDTIRANEIAIENPKTGKVNAIVTILKVFGDKINNSRNANPKKLLKKPNKWLNLKMKALNRPKKHLQRLRRSI
Ga0334989_0076085_2_307	3300033984	Freshwater	DKHLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNTNPKKLLNKPNKWLNSKIKALNRPKKHLQRLRRSI
Ga0334989_0116306_1208_1483	3300033984	Freshwater	GIHLDSTDTHPIKATELALDTIRANEIAIENPETGKVTAVVTMLKVFGDKIKNSRNANPKKLLNKPNKWLNLKKKALNTPNKHLKRLRRSI
Ga0334989_0186010_1_321	3300033984	Freshwater	TGRPVDKRLKIDQPSGIQLDSTDTHPIKATKLALDTIRANEIAIENPETGKVNSVVTMLKVFGDEINNSRNTNPKKLLNKPNKWLNLKKKALNRPNKHLKRLRRSI
Ga0334989_0204667_774_1082	3300033984	Freshwater	VDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDKINNSRNANPKKLLNKPNKWLNSKIKDLNRPKKHLQRLRRSI
Ga0334989_0223662_718_1026	3300033984	Freshwater	VDKRLKIDQPSGIHLDSTDTCPIKATKLALDTIRANEIAIENSKTGKVTAVVGILKVFGDKIGNSRDANPGKLLNKPIKRLNSKKKAINRPKKHLKRLCRSI
Ga0334989_0247146_741_965	3300033984	Freshwater	ALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNTNPKKLLNKPNKWLNLKKKALNRPNKHLKRLRRSI
Ga0334989_0309367_3_266	3300033984	Freshwater	DTRPIKATKLALDTIRANEIAIENSKTGKVIAVVAILKVFGDKIGNSRDANPGKLLNKPIKRLNSKKKHLNRPLKCHDGLSATPARD
Ga0334989_0318719_2_301	3300033984	Freshwater	RLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENSRTGKVSTVVAILKVFGNKINNSRDTNPKKLLNKPNKWLNSKIKALNRPKKHLKRLRRSI
Ga0334989_0348463_537_773	3300033984	Freshwater	HLDSTDTRPIKATKLALDIIRANEIAIENSKTGKVTAVVAILKVFGDKIGNSRNANPGKLLNKPIKRLNSKKKHLNRP
Ga0334989_0351777_515_769	3300033984	Freshwater	DTRPIKATKLALDTIRANEIAIEKSKTGKVTTVVTILKVFGDEIGNSRNANPGKLLNKPIKRLNSKIKALTRPKKHLKRLCRSI
Ga0334989_0420439_420_680	3300033984	Freshwater	STDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNLKKKALDRPNKHLKRLRRSI
Ga0334989_0424050_3_248	3300033984	Freshwater	MGIHIESNDTRPIKATQLALDIIRANEIAIENSKTGKVTTVVAILKIFGDKFGNSRNANPKKLLNKPNKRLNSKKKHLNRPL
Ga0334989_0474744_181_501	3300033984	Freshwater	MGRPVDKRLKIDQPSGIHLDSTDTRPIKAAKLALDTIRAIEIAIENPETGKVTAVVTVLKVFGDKINNSRNTTPKKLLNKPNKWLNSKKKAINRPKKNLQRLCRSI
Ga0334989_0481141_359_619	3300033984	Freshwater	KLVQPSGVHLDSTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVLGNIICNSQSANPGKLLNKPSNRLNSKKKHLNRP
Ga0334989_0487453_359_613	3300033984	Freshwater	DQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDKTGNSRNAYPRKLLNKPIKRLKSKKKRLNRP
Ga0334989_0556377_303_557	3300033984	Freshwater	KLVDKRLKIDQPSGIHLESTDTRPIKATKLALDTIRANEIAIKNSKTGKVTAIVAILKIFGDKFGNSWNANPKKLLNKPNKRLN
Ga0334989_0594039_2_289	3300033984	Freshwater	SPRAFIHFISTDTHPNKSTKLALDTIRANEIAIEKPETGKVTAVVTMLKVFGVKINNSRNANPKKLLNKPSKWLNLKKKALNRPKKHLKRLRRSI
Ga0335003_0358550_6_371	3300033995	Freshwater	LDNDSNSSWDNGSSSTGRPVDKRLKIDQPSGVHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKIKALNRPKKHLQRLRRS
Ga0334998_0447081_401_670	3300034019	Freshwater	MGLQVDKRLKLEQPTGIDLKSTDTRPIKATKLALDVIRANEIAIENSKTGKVTAVVAILKVFGDKSNSRNSKLLIKPNKWLNLKKKDLN
Ga0335005_0576644_358_612	3300034022	Freshwater	DTRPIKATKLALDTIRANEIAIEKSKTGKVTTVVTILKVFGDKIGNSRNANPGKLLNKPIKRLNSKIKALTRPKKHLKRLCRSI
Ga0335005_0650645_286_561	3300034022	Freshwater	DKRLKIDKPSGIHLDSTDTHPIKATKLALDTIRANEIAIENSKTGKVTAVVAILKVFGDKMGNSRKANPGKLLNKPIKRLNSKKKRLNRPL
Ga0335001_0217604_168_431	3300034064	Freshwater	MGLQVDKRLKLEQPTGIDLNSTDTRPVEATKLALDTIRANGIAIENSKTGKVTAVVVILKIFGDKSNSHNSKLLIKPNKWLDLKKKD
Ga0335001_0370734_3_257	3300034064	Freshwater	RPVEKRIKLVQPSGVHLDSTDTRPIEATKLALDTIRTNEIAIENSKTGKVTAVVAILKVFGDNIRNSRNANPGNVLNKPNKRLN
Ga0335001_0483859_83_352	3300034064	Freshwater	MGSQVDKRLKLEQPSGIDLKSTDTRPIKATSLALDIIRANKIAIKNSKTGKVTAVVAILKVFGDKSNSRNSKLLIKPNKWLNLKEKDLN
Ga0335035_0518643_51_353	3300034105	Freshwater	MRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKKLLNKPNKWLNSKIKALNRPKKHLQRLRRSI
Ga0335068_0273034_2_277	3300034116	Freshwater	GIHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKIKNSRNANPKKLLNKPNKWLNLKKKALNRPNKHLKRLRRSI
Ga0335017_0008685_4161_4412	3300034167	Freshwater	LEQPSGIHLESTDTRPIKATKLALDNIRANEIAIENSKTGKVTDVVAILKVFGDKFGNSRNANPKKLLNKPNKRLNPKKKHLK
Ga0335017_0030736_2932_3144	3300034167	Freshwater	MKATKLALDTIRANEIAIENSKTGKVTAVIAILKVFGDKIGNSRNANPGKLLIKPIRKLNLKKKRLNRPLS
Ga0335017_0279306_708_935	3300034167	Freshwater	LALDTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNTNSKKLLNKPNKWLNLKMKALNRPKKHLQRLRRSI
Ga0335017_0300146_2_292	3300034167	Freshwater	MSGPVDKHLKLDQPPGIYLKSTDTRPIKATKLATDTIRANEIALENSKTGKVTAVVAILKIFGGNTHNSLKTNPGKLLNKPNKRLNSKKKHLNRSLK
Ga0335017_0305983_3_317	3300034167	Freshwater	RPVDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIASENPKTGKGTVVVTMLKVFRDKINNSRNANQKKLLNKPNIWLNLKKKALNRPNKHLKRLRRSI
Ga0335017_0387146_381_722	3300034167	Freshwater	LDTGSSSTGRPVDKRLKIDQPSGIHLNSTDTHPIKATKLALDTIRANEIAIENSKTGKVTAIVAIFKVFADNTHNSRSANPGKLLNKPNKWLNLKIKALNRPKKHLQRLRRSI
Ga0335017_0493665_324_647	3300034167	Freshwater	STGRPVDKRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKIFGDKINNSRNANPKKLLNKPNKWLNLRKKALNRPKKHLQRLRRSI
Ga0335017_0563882_2_259	3300034167	Freshwater	MGRPVEKRIKLVQPSGVHLDSTDNRPIKATKLALDTIRANEIAIENSKTGKVTAIVAILKVFGDNICNSRNANPGKLLNKPIKRLN
Ga0335017_0682979_193_495	3300034167	Freshwater	MRLKIDQPSGIHLDSTDTRPIKATKLALDTIRANKIAIENSKTGKVTAVVAILKVFGDKINNSRKANPKKLLNKPNKWLNSKIKALNRPKKHLQRLRRSI
Ga0335061_0100778_1229_1537	3300034168	Freshwater	VDKRLKIDKPSGIHLDSTDTRPIKATKLALDTIRANEIAIEKSKTGKVTTVVTILKVFGDEIGNSRNANPGKLLNKPIKRLNSKIKALTRPKKHLKRLCRSI
Ga0335039_0471608_3_221	3300034355	Freshwater	DTIRANEIAIENPETGKVTAVVTMLKVFGDKINNSRNANPKMLLNKPNKWLNSKKKALNRPKKHLKRLRRSI
Ga0335064_0379265_2_277	3300034357	Freshwater	GVHLDSTDTRPIKATKLALDTIRANEIAIENPETGKVTAVVTMLKVFGDKIKNSRNANPKKLLNKPNKWLNLKKKALNRPNKHLKRLRRSI
Ga0335064_0494632_533_775	3300034357	Freshwater	KIDQPSGIHLDSTDTRPIKTTKLALDTIRANEIAIENPKTGKVTAVVTILKVFRDKINNSRNANPKKLLNKPNKWLNLKK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079623

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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