Metagenome / Metatranscriptome Family F079662

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079662
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	69 residues
Representative Sequence	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Number of Associated Samples	71
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	53.10 %
% of genes near scaffold ends (potentially truncated)	43.48 %
% of genes from short scaffolds (< 2000 bps)	94.78 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.304 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (28.696 % of family members)
Environment Ontology (ENVO)	Unclassified (37.391 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.957 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 36.84% β-sheet: 0.00% Coil/Unstructured: 63.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF13358	DDE_3	1.74
PF13551	HTH_29	0.87
PF04341	DUF485	0.87
PF05598	DUF772	0.87
PF13577	SnoaL_4	0.87
PF09278	MerR-DNA-bind	0.87
PF13737	DDE_Tnp_1_5	0.87
PF07592	DDE_Tnp_ISAZ013	0.87
PF01738	DLH	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	0.87
COG3162	Uncharacterized membrane protein, DUF485 family	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
All Organisms	root	All Organisms	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
cellular organisms	root	All Organisms → cellular organisms	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.26 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.52 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.91 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	7.83 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	5.22 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Microvirga calopogonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	0.87 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.87 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.87 %
Microvirga pudoricolor	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga pudoricolor	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Methylobacterium sp. WSM2598	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	0.87 %
Microvirga calopogonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	0.87 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.87 %
Microvirga pudoricolor	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga pudoricolor	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001305\|C688J14111_10229801	Not Available	579	Open in IMG/M
3300001686\|C688J18823_10484169	Not Available	794	Open in IMG/M
3300002568\|C688J35102_119053581	Not Available	631	Open in IMG/M
3300004479\|Ga0062595_100453860	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300004479\|Ga0062595_100538862	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	890	Open in IMG/M
3300004798\|Ga0058859_11533277	Not Available	666	Open in IMG/M
3300004798\|Ga0058859_11821028	Not Available	648	Open in IMG/M
3300004803\|Ga0058862_12873915	Not Available	618	Open in IMG/M
3300005093\|Ga0062594_101911483	Not Available	630	Open in IMG/M
3300005328\|Ga0070676_11536970	Not Available	513	Open in IMG/M
3300005337\|Ga0070682_100714764	Not Available	805	Open in IMG/M
3300005355\|Ga0070671_100138044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2056	Open in IMG/M
3300005441\|Ga0070700_101195783	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300005616\|Ga0068852_102674785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. WSM2598	518	Open in IMG/M
3300006954\|Ga0079219_10386355	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300007790\|Ga0105679_10935878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1467	Open in IMG/M
3300009101\|Ga0105247_10966380	Not Available	663	Open in IMG/M
3300009144\|Ga0058702_10515144	Not Available	501	Open in IMG/M
3300009553\|Ga0105249_12414158	Not Available	598	Open in IMG/M
3300009789\|Ga0126307_10081007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2563	Open in IMG/M
3300009789\|Ga0126307_10723645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	803	Open in IMG/M
3300009789\|Ga0126307_11175933	Not Available	621	Open in IMG/M
3300009840\|Ga0126313_11361285	Not Available	587	Open in IMG/M
3300009840\|Ga0126313_11746133	Not Available	520	Open in IMG/M
3300010036\|Ga0126305_10175085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1348	Open in IMG/M
3300010036\|Ga0126305_10967006	Not Available	583	Open in IMG/M
3300010037\|Ga0126304_10708179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300010037\|Ga0126304_10840849	Not Available	623	Open in IMG/M
3300010038\|Ga0126315_10341593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	931	Open in IMG/M
3300010039\|Ga0126309_10049711	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300010039\|Ga0126309_10292043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	939	Open in IMG/M
3300010039\|Ga0126309_10362926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	856	Open in IMG/M
3300010039\|Ga0126309_10370163	Not Available	849	Open in IMG/M
3300010040\|Ga0126308_10190186	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300010040\|Ga0126308_10805470	Not Available	651	Open in IMG/M
3300010041\|Ga0126312_10068714	All Organisms → cellular organisms → Bacteria	2386	Open in IMG/M
3300010041\|Ga0126312_10295451	Not Available	1142	Open in IMG/M
3300010041\|Ga0126312_10673538	Not Available	746	Open in IMG/M
3300010041\|Ga0126312_11198185	Not Available	560	Open in IMG/M
3300010042\|Ga0126314_10532391	Not Available	854	Open in IMG/M
3300010042\|Ga0126314_11265989	Not Available	552	Open in IMG/M
3300010044\|Ga0126310_10536918	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300010044\|Ga0126310_10796213	Not Available	726	Open in IMG/M
3300010044\|Ga0126310_11006463	Not Available	657	Open in IMG/M
3300010044\|Ga0126310_11390296	Not Available	571	Open in IMG/M
3300010045\|Ga0126311_10292032	Not Available	1224	Open in IMG/M
3300010045\|Ga0126311_10344855	Not Available	1133	Open in IMG/M
3300010045\|Ga0126311_10366895	Not Available	1101	Open in IMG/M
3300010045\|Ga0126311_11210982	Not Available	625	Open in IMG/M
3300010109\|Ga0127497_1126993	Not Available	510	Open in IMG/M
3300010112\|Ga0127458_1124456	Not Available	535	Open in IMG/M
3300010146\|Ga0126320_1090899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	815	Open in IMG/M
3300010146\|Ga0126320_1411567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	852	Open in IMG/M
3300010166\|Ga0126306_10507970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	954	Open in IMG/M
3300010166\|Ga0126306_10804378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	758	Open in IMG/M
3300010371\|Ga0134125_13128583	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010375\|Ga0105239_12788920	Not Available	570	Open in IMG/M
3300010397\|Ga0134124_12841360	Not Available	528	Open in IMG/M
3300011332\|Ga0126317_10554066	Not Available	570	Open in IMG/M
3300012212\|Ga0150985_102683138	Not Available	963	Open in IMG/M
3300012212\|Ga0150985_103131734	Not Available	572	Open in IMG/M
3300012212\|Ga0150985_104218744	Not Available	2039	Open in IMG/M
3300012212\|Ga0150985_107602964	Not Available	1084	Open in IMG/M
3300012212\|Ga0150985_110413586	Not Available	789	Open in IMG/M
3300012212\|Ga0150985_112255214	Not Available	828	Open in IMG/M
3300012212\|Ga0150985_114861649	All Organisms → cellular organisms → Bacteria → Proteobacteria	1663	Open in IMG/M
3300012212\|Ga0150985_116649616	Not Available	536	Open in IMG/M
3300012212\|Ga0150985_118029107	Not Available	599	Open in IMG/M
3300012376\|Ga0134032_1008208	Not Available	531	Open in IMG/M
3300012378\|Ga0134025_1158157	Not Available	654	Open in IMG/M
3300012389\|Ga0134040_1212020	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012396\|Ga0134057_1039715	Not Available	591	Open in IMG/M
3300012396\|Ga0134057_1323044	Not Available	1126	Open in IMG/M
3300012469\|Ga0150984_100557895	Not Available	559	Open in IMG/M
3300012469\|Ga0150984_100917916	Not Available	552	Open in IMG/M
3300012469\|Ga0150984_101732794	Not Available	986	Open in IMG/M
3300012469\|Ga0150984_110374160	Not Available	1100	Open in IMG/M
3300012469\|Ga0150984_110386305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	970	Open in IMG/M
3300012469\|Ga0150984_110569777	Not Available	829	Open in IMG/M
3300012469\|Ga0150984_115127865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga pudoricolor	1064	Open in IMG/M
3300012469\|Ga0150984_115713813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1572	Open in IMG/M
3300012469\|Ga0150984_120300900	Not Available	746	Open in IMG/M
3300013306\|Ga0163162_11551401	Not Available	755	Open in IMG/M
3300013306\|Ga0163162_13407602	Not Available	507	Open in IMG/M
3300013308\|Ga0157375_13010727	Not Available	563	Open in IMG/M
3300014487\|Ga0182000_10674149	Not Available	508	Open in IMG/M
3300014745\|Ga0157377_10241250	Not Available	1167	Open in IMG/M
3300017965\|Ga0190266_11092995	Not Available	543	Open in IMG/M
3300018465\|Ga0190269_10497324	Not Available	790	Open in IMG/M
3300018466\|Ga0190268_10196917	Not Available	1094	Open in IMG/M
3300019767\|Ga0190267_10136537	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300020078\|Ga0206352_10378186	Not Available	1204	Open in IMG/M
3300020080\|Ga0206350_11208828	Not Available	817	Open in IMG/M
3300020081\|Ga0206354_11181165	Not Available	819	Open in IMG/M
3300025901\|Ga0207688_10587486	Not Available	701	Open in IMG/M
3300025937\|Ga0207669_11130881	Not Available	662	Open in IMG/M
3300028778\|Ga0307288_10455332	Not Available	526	Open in IMG/M
3300028880\|Ga0307300_10356906	Not Available	505	Open in IMG/M
3300030904\|Ga0308198_1091927	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300030905\|Ga0308200_1071354	Not Available	691	Open in IMG/M
3300030987\|Ga0308155_1035852	Not Available	512	Open in IMG/M
3300030988\|Ga0308183_1035571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300030988\|Ga0308183_1205959	Not Available	514	Open in IMG/M
3300030989\|Ga0308196_1046026	Not Available	591	Open in IMG/M
3300030990\|Ga0308178_1180699	Not Available	501	Open in IMG/M
3300031058\|Ga0308189_10079775	Not Available	990	Open in IMG/M
3300031081\|Ga0308185_1060507	Not Available	500	Open in IMG/M
3300031091\|Ga0308201_10284922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga calopogonii	582	Open in IMG/M
3300031092\|Ga0308204_10221025	Not Available	600	Open in IMG/M
3300031096\|Ga0308193_1024213	Not Available	801	Open in IMG/M
3300031114\|Ga0308187_10438131	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031124\|Ga0308151_1042235	Not Available	537	Open in IMG/M
3300031505\|Ga0308150_1017853	Not Available	725	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.43%
Host-Associated	Host-Associated	29.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.83%
Plants	Host-Associated → Plants	26.96%
Aquatic	Environmental → Aquatic	2.61%
Human	Host-Associated → Human	2.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.30%
Freshwater	Environmental → Aquatic → Freshwater	2.61%
Digestive System	Host-Associated → Human → Digestive System	2.61%
Phylloplane	Host-Associated → Plants → Phylloplane	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.83%
Loam	Environmental → Terrestrial → Soil → Loam	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.61%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.61%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	59.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.48%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.61%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.61%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.74%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.87%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	28.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.13%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	7.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	7.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.09%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.61%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.87%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009144	Agave microbial communities from Guanajuato, Mexico - Or.Sf.e	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012378	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030987	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_144 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031124	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_140 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031505	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J14111_102298011	3300001305	Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL*
C688J18823_104841692	3300001686	Soil	MRKLTYFSSTAALATAALVTAVLIWPPISKAAPTGSVDVGSIERMDLGILPEFDATYQRRIGVLDPT*
C688J35102_1190535811	3300002568	Soil	MRNLKYIGAALVLATAALVTSVMIRPRVSEAALPVGLNVSAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0062595_1004538602	3300004479	Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVSAIERMDLGVLPEFDATYQRRIGVLDPL*
Ga0062595_1005388622	3300004479	Soil	MRNLKYLGAALVLATAGLATSVLIRPRSSEAALPEGVDVRAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0058859_115332772	3300004798	Host-Associated	PPRKEEIMRTLKYIGAAFALATAALVTSVLIRPPVSEAALPEGVNVGAIERMDRGIMPEFDATYQRRIGVLDPL*
Ga0058859_118210281	3300004798	Host-Associated	MRNLTYLGAAFALATAALVTNVLMRPPVSKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0058862_128739152	3300004803	Host-Associated	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0062594_1019114831	3300005093	Soil	MRTLKYFGAALALATAALVAAVLTEPPISKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0070676_115369701	3300005328	Miscanthus Rhizosphere	MRNLTYLGAAFALATAALVTNVLMRPPVSKAAPVGGVDVSAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0070682_1007147642	3300005337	Corn Rhizosphere	KEEIMRSLKYIGAALALATAALVTSVLIRPPVSEAALPRGVDVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0070671_1001380442	3300005355	Switchgrass Rhizosphere	MRTLKYFGAALALATAALVAAVLTEPPISKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIG
Ga0070700_1011957832	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLKYIGAAFALATAALVTSVLIRPPVSEAALPRGVDVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0068852_1026747851	3300005616	Corn Rhizosphere	MRSLKYIGAALALATAALVTSVLIRPPVSEAALPVGVDVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0079219_103863551	3300006954	Agricultural Soil	MRNLTYLGAAFGLATAALVTTVLIRPPVSKAAPVGGVDVSAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0105679_109358781	3300007790	Soil	MRKLKYLGSAFALAAAALVATVLIRPPVSQAALPGGVDVGSIERTPSGVIPEFDTTYQRRIGVLDSL*
Ga0105247_109663801	3300009101	Switchgrass Rhizosphere	MRTLKYFGAALALATAALVAAVLTEPPISKAAPVGGVDVGSIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0058702_105151441	3300009144	Agave	MRNLKYLGAAFALAIAALVTSVLIRPPVTEAALPVGLNVGAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0105249_124141582	3300009553	Switchgrass Rhizosphere	MRNLTYLGAAFALATAALVTTVLIRPPVSQAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0126307_100810072	3300009789	Serpentine Soil	MRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFEATYQRRTGVLDPT*
Ga0126307_107236451	3300009789	Serpentine Soil	KEETMRKLKYFGAAFALAAAALVATVLIRPPVSQAALPRGVDVGSIERTPSGVIPEFDATYQRRIGVLDPL*
Ga0126307_111759331	3300009789	Serpentine Soil	MRNLKYLGAAFALATAALVATVLIRPPVSQAALPGGVDVGSIERTPSGVLPEFDATYQRRIGVLDPT*
Ga0126313_113612851	3300009840	Serpentine Soil	MRNLKYFGAAFALAAAALVATVLIRPPVSKAAPVGAVDVGSIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0126313_117461332	3300009840	Serpentine Soil	GAAFALAAAALVTTVLIRPPVSKAAPVGVVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0126305_101750852	3300010036	Serpentine Soil	MRSLKYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERTDLGVLPEFDAIYQRRIGVLDPT*
Ga0126305_109670061	3300010036	Serpentine Soil	MRKLKYFGAAFALAAAALVATVLIRPPVSQAALPGGVDVGSIERTPSGVIPEFDATYQRRIGVLDPL*
Ga0126304_107081791	3300010037	Serpentine Soil	EETMRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERMDPGVLPEFDATYQRRIGVLDPT*
Ga0126304_108408491	3300010037	Serpentine Soil	MRNLKYLGAAFALATAALVATVLSRPPVSQAALPGGVDVGSIERTPSGVLPEFDATYQRRIGVLDPT*
Ga0126315_103415932	3300010038	Serpentine Soil	MRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFDATYQRRTGVLDPT*
Ga0126309_100497114	3300010039	Serpentine Soil	LTYLGAAFALATAALVTTVLIRPPISKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0126309_102920431	3300010039	Serpentine Soil	MRNPTYFGAAFALAIALFWSTMLTAPPISKAAPVGGVDVRAIERMDLGVLPEFDATYQRR
Ga0126309_103629261	3300010039	Serpentine Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDRGVIPEFDATYQRRMGVLDPL*
Ga0126309_103701631	3300010039	Serpentine Soil	MRNLTYFGAAFALATALFWTTMLIAPPISKAAPSGGVDIGSIERIDLGVIPEFDATYQRRIGVLDPT*
Ga0126308_101901862	3300010040	Serpentine Soil	MRNLTYVGAAFALATAALVTTVLIRPPVSKAAPVGNVDVGSIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0126308_108054702	3300010040	Serpentine Soil	MRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERVDLGVLPEFEATYQRRTGVLDPT*
Ga0126312_100687141	3300010041	Serpentine Soil	MRNLKYFGAAFALAAAALVTTVLIRPPVSLAAPPGRVDVGSIERTPSGVIPEFDATYQRRIGVLDPT*
Ga0126312_102954511	3300010041	Serpentine Soil	MRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFDATYLRRTGVLDPT*
Ga0126312_106735382	3300010041	Serpentine Soil	MRKLKYFGAAFALAAAALVATVLIRPPVSQAALPGGVDVGSIERTPSGVLPEFDATYQRRIGVLDPL*
Ga0126312_111981851	3300010041	Serpentine Soil	MRSLKYLGAAFALATAALVTTVLIRPPVSDAALPGGVDVRAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0126314_105323911	3300010042	Serpentine Soil	SKSGPPRKEETMRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFETTYQRRTGVLDPT*
Ga0126314_112659891	3300010042	Serpentine Soil	MRNLTFLGASFALAAAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0126310_105369182	3300010044	Serpentine Soil	VIRHLNSIVQIWTSSKEEIMRNLTYFGAAFALATALFWSTMLTSPPILKAAPVGGVDVGAIERTDVGVLPEFDAIYQRRIGVLDPP*
Ga0126310_107962131	3300010044	Serpentine Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSQAAPLGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0126310_110064632	3300010044	Serpentine Soil	MRNLKYLGAAFALATAALVTTVLIRPPVSEAALPGGVDVGAIERMDRGVVPEFDATYQRRIGVLDPL*
Ga0126310_113902961	3300010044	Serpentine Soil	MRSLKYLGAAFALATAALVSTVLIRPPVSDAALPGGVDVRAIERMDRGIMPEFDATYQRRIGVLDPL*
Ga0126311_102920322	3300010045	Serpentine Soil	MRNLKYLGAAFALATAALVATVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFDATYQRRIGVLDPT*
Ga0126311_103172834	3300010045	Serpentine Soil	SEFGPPRKEETMCNLKYFGAAFALATALFWTTMLTAPPITKAVPLGSVDVMTIDRIPPGVIPEFDATYQRRIGVLDPL*
Ga0126311_103448551	3300010045	Serpentine Soil	IWTSSRRGDRANLTYLGAAFALATAALVTTVLIRPPVSDAALSGGVDVRAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0126311_103668952	3300010045	Serpentine Soil	MRNLKYIGAALVLATAGLATSVLIRPRVSEAALPVGLNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0126311_112109821	3300010045	Serpentine Soil	MRNLKYFGAAFALAAAALVTSVLIRPPVSRAAPLGSVDVGAIERMDLGVVPEFDATYQRRIGVLDPL*
Ga0127497_11269932	3300010109	Grasslands Soil	REEETMRNLTFLGASFALAAAALVTTVLIRPPVSEAALPEGVDVRAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0127458_11244562	3300010112	Grasslands Soil	EIIRSLKYIGAALALATAALVTTVLIRPPVSKAAPPRGVDVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0126320_10908991	3300010146	Soil	PPRKEEIMRNLKYLGAALVLATAGLATSVMIRPRVTEAALPVGLNVSAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0126320_14115671	3300010146	Soil	PRKEEIMRNLKYIGAALVLATAGLATSVLIRPRVSEAALPEGVVVHAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0126306_105079703	3300010166	Serpentine Soil	MRNLTYVGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERTSSGVIPEFDATYQRRTGVLDPL*
Ga0126306_108043781	3300010166	Serpentine Soil	MRKLKYFGAAFALAAAALVATVLIRPPVSQAALPRGVDVGSIERTPSGVIPEFDAT
Ga0134125_131285832	3300010371	Terrestrial Soil	RVIESKSGPPRKEETMRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVSAIERMDLGVLPEFDATYQRRIGVLDPL*
Ga0105239_127889202	3300010375	Corn Rhizosphere	MRNLKYIGAALVLATAGLVTSVMIRPRVSEAALPVGLNVSAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0134124_128413601	3300010397	Terrestrial Soil	PPRKEEIMRSLKYIGAALALATAALVTSVLIRPPVSKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0126317_105540661	3300011332	Soil	PPRKEETMRNLTYLGAAFALATAALVTTVLIRPPVSQAAPLGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0150985_1026831381	3300012212	Avena Fatua Rhizosphere	EIMRNLKYIGAALVLATAGLVTSVMIRPRVSEAALPVGLNVSAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150985_1031317341	3300012212	Avena Fatua Rhizosphere	MRTLKYIGAAFALATAALVTSVMIRPPVSEAALPEGVNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150985_1042187443	3300012212	Avena Fatua Rhizosphere	MRNLKYIGAAFALATAALVATVLIRPPVSEAALPEGLNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150985_1076029642	3300012212	Avena Fatua Rhizosphere	ALVLATAGLATSVLIRPRVSEAALPEGVDVHAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150985_1104135863	3300012212	Avena Fatua Rhizosphere	GPPRKEEIMRNLKYIGAALVLATATFVATVLIRPPVSEAAPPGGVDVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150985_1122552141	3300012212	Avena Fatua Rhizosphere	MRNLTFLGASFALAAAALVTTVLIRPPVSKAAPVGGVDVSAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0150985_1148616491	3300012212	Avena Fatua Rhizosphere	MRNLKYLGAALVLATAGLVTSMMIRPRVTEAALPVGLNVGAIERMDQGVIPEFDATYQRRIGVLDPL*
Ga0150985_1166496161	3300012212	Avena Fatua Rhizosphere	MEEIMRSLKYIGAAFVLATAGLATSVLIRPRVSEAALPVGLNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150985_1180291071	3300012212	Avena Fatua Rhizosphere	GAAFALATAALVITVLTRPPVSKAAPVGGVDVAAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0134032_10082081	3300012376	Grasslands Soil	PRKEEIMRILKYIGAALVLATAGLVTSVLIRRPVSEAALPVGLNVGAIERVDRGVIPEFDATYQRRIGVLDPL*
Ga0134025_11581571	3300012378	Grasslands Soil	RKEETMRNLTYLGAAFALATAALVTTVLIRPPVSEAAPVGGVDVSAIERMDLGVIREFDATYQRRIGVLDPL*
Ga0134040_12120202	3300012389	Grasslands Soil	RKEEIMRNLKYLGAALVLATAALVTSVMIQPRVTEAALPVGLNVGAIERMDQGVIPEFDATYQRRIGVLDPL*
Ga0134057_10397152	3300012396	Grasslands Soil	KEEIMRSLKYIGAALALATAALVTTVLIRPPVSKAAPPRGVDVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0134057_13230441	3300012396	Grasslands Soil	PREEETMRNLTFLGASFALAAAALVTTVLIRPPVSEAALPEGVDVRAIERMDLGVIPEFDATYQRRIGVLDPL*
Ga0150984_1005578952	3300012469	Avena Fatua Rhizosphere	PRKEEIMRNLKYIGAALVLATAGLVTSVLIRPPVSDAALPVGLNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150984_1009179162	3300012469	Avena Fatua Rhizosphere	PRKEGIMRNLKYLGAAFLLAIAALVTSVLIRPPVSEAALPEGLNVGAIERMDRGIMPEFDATYQRRIGVLDPL*
Ga0150984_1017327942	3300012469	Avena Fatua Rhizosphere	MRSLKYLGAAFALATAALVATVLIRPPVSEAALPEGLNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150984_1103741602	3300012469	Avena Fatua Rhizosphere	GPPRKEEIMRTLKYIGAAFALATAALVTSVLIRPPVSEAALPEGVNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150984_1103863051	3300012469	Avena Fatua Rhizosphere	GPPRKEEIMRNLKYIGAALVLATAGLATSVLIRPRVSEAALPVGLNVGAIERMDRGVIPEFDVTYQRRIGVLDPP*
Ga0150984_1105697771	3300012469	Avena Fatua Rhizosphere	MRKLTYFSSTAALATAALVTAVLIWPPISKAAPTGSVDVGSIERMDLGVLPEFDATYQRRIGVLDPT*
Ga0150984_1151278653	3300012469	Avena Fatua Rhizosphere	RKEEIMRNLKYLGAALVLATAGLATSVMIRPRVTEAALPVGLNVSAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0150984_1157138132	3300012469	Avena Fatua Rhizosphere	LDLLGRRRPMRNLRYVGAAFALATAALVITVLTRPPVSKAAPVGGVDVAAIERMDLGIIPEFDATYQRRIGVLDPL*
Ga0150984_1203009002	3300012469	Avena Fatua Rhizosphere	MRSLKYIGAAFVLATAGLATSVLIRPRVSEAALPVGLNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0163162_115514013	3300013306	Switchgrass Rhizosphere	FALATAALVTTVLIRPPVSKAAPVGGVDVSAIERMDLGVLPEFDATYQRRIGVLDPL*
Ga0163162_134076022	3300013306	Switchgrass Rhizosphere	MRSLKYIGAALALATAALVTSVLIRPPVSEAALPEGVNVGAIERMDRGVIPEFDATYQRRIGVLDPL*
Ga0157375_130107272	3300013308	Miscanthus Rhizosphere	MRTLKYLVAAFALATAAFWTSVLIRPPVSEAALPRGVDVGAIERMDRGVLPEFDATYQRRIGVLDPL*
Ga0182000_106741492	3300014487	Soil	MRNLKYLGAAFALAIAALVTSVLIRPPVSEAALPEGLNVGAIERMDRSIMPEFDATYQRRIGVLDPL*
Ga0157377_102412502	3300014745	Miscanthus Rhizosphere	MRNLTYLGAAFALATAALVTTVLIRPPVSEAAPVGGVDVSAIERMDLGVLPEFDATYQRRIGVLDPL*
Ga0190266_110929951	3300017965	Soil	TMRNLTYLGAAFALATAALVTTVLIRPPVSQAAPVGRVDVGAIERMDLCVLPEFDATYQRRIGVLDPL
Ga0190269_104973241	3300018465	Soil	MRNLKYLGAAFALATAALVTAVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFEATYQRRTGVLDPT
Ga0190268_101969171	3300018466	Soil	MRNLKYLGAAFALATAALVTVVLTAPPVSKAAPLGSVDVRSIERMDLGVLPEFEATYQRRTGVLDPT
Ga0190267_101365373	3300019767	Soil	RNLTYLGAAFALATAALVATVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRMGVLDPL
Ga0206352_103781861	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLKYFGAALALATAALVVTVLTEPPISKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL
Ga0206350_112088282	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	RKEEAMRNLTYLGAAFALATAALVTNVLMRPPVSKAAPVGGVDVSAIERMDRAVLPEFDATYQRRIGVLDPL
Ga0206354_111811651	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	RKEGIMRTLKYFGAALALATAALVAAVLTEPPISKAAPVGGVDVSAIERMDRGVLPEFDATYQRRIGVLDPL
Ga0207688_105874862	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRTLKYFGAALALATAALVATVLTEPPISKAAPVGGVDVSAIERMDRGVIPEFDATYQRRIGVLDPL
Ga0207669_111308812	3300025937	Miscanthus Rhizosphere	MRTLKYIGAAFALATAALVTNVLMRPPVSKAAPVGGVDVSAIERMDRAVLPEFDATYQRRIGVLDPL
Ga0307288_104553322	3300028778	Soil	LTYLGAAFALATAALVATVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0307300_103569061	3300028880	Soil	VVRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308198_10919271	3300030904	Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308200_10713541	3300030905	Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSQAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308155_10358521	3300030987	Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPT
Ga0308183_10225533	3300030988	Soil	LATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308183_10355713	3300030988	Soil	MRNLTYLGAAFALATAALVTTVLIRPPVSQAAPVGRVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308183_12059592	3300030988	Soil	MRNLTYFGAAFALATALFWSTMLTAPPISKAAPVGGVDVGSIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308196_10460263	3300030989	Soil	RKEETMRNLTYLGAAFALATAALVTTVLIRPPVSQAAPVGRVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308178_11806991	3300030990	Soil	PRKEETMRNLTYLGAAFALATAALVTTVLIRPPVSQAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308189_100797751	3300031058	Soil	KEETMRKLTYFSSTAALATAALVITVLIWPPISKAAPVGGVDVGSIERMDLGILPEFDATYQRRIGVLDPT
Ga0308185_10605071	3300031081	Soil	PRKEETMRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308201_102849222	3300031091	Soil	MRNLTYLGAAFALATAALVTAVLIRPPVSEAAPVGRVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308204_102210252	3300031092	Soil	RKEETMRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL
Ga0308193_10242132	3300031096	Soil	ETMRNLTYLGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGAIERMDRGIMPEFDATYQRRIGVLDPL
Ga0308187_104381311	3300031114	Soil	LGAAFALATAALVTTVLIRPPVSKAAPVGGVDVGSIERMDLGVIPEFDATYQRRIGVLDP
Ga0308151_10422351	3300031124	Soil	MRKLTYFSSTAALATAALVTAVLIWPPISKAAPTGSVDVGSIERMDLGVLPEFDATYQRRIGVLDPT
Ga0308150_10178531	3300031505	Soil	TYLGAAFALATAALVTTVLIRPPVSQAAPVGGVDVGAIERMDLGVIPEFDATYQRRIGVLDPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079662

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences