Metagenome / Metatranscriptome Family F079720

Basic Information
Family ID	F079720
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	53 residues
Representative Sequence	LTLGLAILAAFGLVLEILVVEEVLFSRCKYEIRSAVYALEDAILKLRHSNCAPLST
Number of Associated Samples	99
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.68 %
% of genes near scaffold ends (potentially truncated)	80.00 %
% of genes from short scaffolds (< 2000 bps)	94.78 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Bacteria (67.826 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (22.609 % of family members)
Environment Ontology (ENVO)	Unclassified (26.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.870 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.33% β-sheet: 0.00% Coil/Unstructured: 41.67%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01165	Ribosomal_S21	70.43
PF00483	NTP_transferase	9.57
PF13616	Rotamase_3	0.87
PF09844	DUF2071	0.87
PF02913	FAD-oxidase_C	0.87
PF11984	DUF3485	0.87
PF00326	Peptidase_S9	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	70.43
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.83 %
Unclassified	root	N/A	32.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.83 %
Unclassified	root	N/A	32.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.83 %
Unclassified	root	N/A	32.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	14.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	7.83 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	7.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	7.83 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5.22 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003297\|Ga0006818J48916_104827	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300003574\|Ga0007410J51695_1013440	Not Available	513	Open in IMG/M
3300004022\|Ga0055432_10254656	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300004103\|Ga0058903_1534915	Not Available	514	Open in IMG/M
3300004134\|Ga0058906_1349414	Not Available	554	Open in IMG/M
3300004137\|Ga0058883_1558196	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300004139\|Ga0058897_10032232	Not Available	505	Open in IMG/M
3300004139\|Ga0058897_11076263	Not Available	519	Open in IMG/M
3300004468\|Ga0068977_1293003	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300004470\|Ga0068967_1320286	Not Available	586	Open in IMG/M
3300004559\|Ga0068942_1204694	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300004608\|Ga0068924_1358102	Not Available	528	Open in IMG/M
3300004616\|Ga0068930_1002864	All Organisms → cellular organisms → Bacteria → Acidobacteria	947	Open in IMG/M
3300004619\|Ga0068953_1001854	Not Available	511	Open in IMG/M
3300004631\|Ga0058899_12264520	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300004971\|Ga0072324_1314222	Not Available	541	Open in IMG/M
3300004977\|Ga0072329_1378987	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005332\|Ga0066388_104635798	Not Available	700	Open in IMG/M
3300005531\|Ga0070738_10048308	All Organisms → cellular organisms → Bacteria	2694	Open in IMG/M
3300009093\|Ga0105240_12445353	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009174\|Ga0105241_12644852	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300009177\|Ga0105248_11347506	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300009551\|Ga0105238_11395308	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300009698\|Ga0116216_10030374	All Organisms → cellular organisms → Bacteria	3365	Open in IMG/M
3300009698\|Ga0116216_10496312	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300010048\|Ga0126373_12181616	Not Available	615	Open in IMG/M
3300010094\|Ga0127480_1118597	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300010097\|Ga0127501_1008658	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300010130\|Ga0127493_1040982	Not Available	526	Open in IMG/M
3300010143\|Ga0126322_1292768	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300010341\|Ga0074045_10278879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1100	Open in IMG/M
3300010371\|Ga0134125_11166404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	842	Open in IMG/M
3300010376\|Ga0126381_101716511	All Organisms → cellular organisms → Bacteria → Acidobacteria	907	Open in IMG/M
3300010397\|Ga0134124_10640047	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300010859\|Ga0126352_1045713	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300011014\|Ga0138596_107529	Not Available	529	Open in IMG/M
3300011024\|Ga0138530_107060	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300011024\|Ga0138530_111882	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300011027\|Ga0138580_119561	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300011054\|Ga0138523_1063061	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300011064\|Ga0138525_1115538	Not Available	524	Open in IMG/M
3300011076\|Ga0138574_1049156	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300011078\|Ga0138565_1191634	Not Available	521	Open in IMG/M
3300011081\|Ga0138575_1063165	Not Available	586	Open in IMG/M
3300011081\|Ga0138575_1079123	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300011081\|Ga0138575_1138212	Not Available	563	Open in IMG/M
3300011082\|Ga0138526_1044681	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300011087\|Ga0138570_1063661	Not Available	796	Open in IMG/M
3300011120\|Ga0150983_10365781	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300011120\|Ga0150983_13012245	Not Available	535	Open in IMG/M
3300011120\|Ga0150983_13324066	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012198\|Ga0137364_10505807	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	908	Open in IMG/M
3300012212\|Ga0150985_102266711	Not Available	509	Open in IMG/M
3300012212\|Ga0150985_104921756	Not Available	1034	Open in IMG/M
3300012212\|Ga0150985_110453331	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300012212\|Ga0150985_110553888	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300012350\|Ga0137372_10574827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	829	Open in IMG/M
3300012356\|Ga0137371_11245706	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300012382\|Ga0134038_1063636	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300012399\|Ga0134061_1138337	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300012401\|Ga0134055_1376955	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	787	Open in IMG/M
3300012469\|Ga0150984_103296948	Not Available	633	Open in IMG/M
3300012469\|Ga0150984_110556174	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300012469\|Ga0150984_113156700	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300012469\|Ga0150984_116940642	Not Available	528	Open in IMG/M
3300012469\|Ga0150984_122790869	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300012944\|Ga0137410_11645131	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300012989\|Ga0164305_11611592	Not Available	580	Open in IMG/M
3300013102\|Ga0157371_11425634	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300013297\|Ga0157378_11894542	Not Available	645	Open in IMG/M
3300014165\|Ga0181523_10070601	All Organisms → cellular organisms → Bacteria → Acidobacteria	2130	Open in IMG/M
3300014501\|Ga0182024_10000207	All Organisms → cellular organisms → Bacteria	141158	Open in IMG/M
3300016319\|Ga0182033_10530056	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300019241\|Ga0187793_1147214	Not Available	529	Open in IMG/M
3300019241\|Ga0187793_1419845	Not Available	672	Open in IMG/M
3300019264\|Ga0187796_1439506	Not Available	518	Open in IMG/M
3300019273\|Ga0187794_1152275	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300020065\|Ga0180113_1345567	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300020082\|Ga0206353_10173682	Not Available	569	Open in IMG/M
3300021860\|Ga0213851_1124052	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300022499\|Ga0242641_1009719	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300022507\|Ga0222729_1074493	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300022508\|Ga0222728_1048548	Not Available	708	Open in IMG/M
3300022533\|Ga0242662_10265955	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300022533\|Ga0242662_10338651	Not Available	510	Open in IMG/M
3300022711\|Ga0242674_1055047	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300022712\|Ga0242653_1067338	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300022715\|Ga0242678_1071488	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300022721\|Ga0242666_1069973	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300022722\|Ga0242657_1077692	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300022726\|Ga0242654_10350828	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300025930\|Ga0207701_10740833	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	830	Open in IMG/M
3300025934\|Ga0207686_10220799	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1368	Open in IMG/M
3300025936\|Ga0207670_10647791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	871	Open in IMG/M
3300025986\|Ga0207658_11794310	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300026121\|Ga0207683_10567804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1049	Open in IMG/M
3300027854\|Ga0209517_10587802	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300028379\|Ga0268266_11244139	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300028380\|Ga0268265_11323089	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300029636\|Ga0222749_10819597	Not Available	509	Open in IMG/M
3300030000\|Ga0311337_11510471	Not Available	589	Open in IMG/M
3300030740\|Ga0265460_10926136	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300030990\|Ga0308178_1053876	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031017\|Ga0265744_112325	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031042\|Ga0265749_101703	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031093\|Ga0308197_10302028	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_110126765	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031421\|Ga0308194_10127578	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300031446\|Ga0170820_15718251	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031469\|Ga0170819_12940670	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300032160\|Ga0311301_11279361	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	930	Open in IMG/M
3300032770\|Ga0335085_10000012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	745943	Open in IMG/M
3300033004\|Ga0335084_11953953	Not Available	572	Open in IMG/M
3300034653\|Ga0316599_221301	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.87%
Host-Associated	Host-Associated	19.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.52%
Plants	Host-Associated → Plants	19.13%
Aquatic	Environmental → Aquatic	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.09%
Freshwater	Environmental → Aquatic → Freshwater	3.48%
Marine	Environmental → Aquatic → Marine	0.87%
Peat	Environmental → Terrestrial → Peat	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.26%
Loam	Environmental → Terrestrial → Soil → Loam	9.57%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.35%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.87%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	22.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.22%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.22%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.35%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.48%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003297	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300003574	Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_26 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004134	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF248 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004137	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004470	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004559	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004608	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004616	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 15 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004619	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004971	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 41 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004977	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010094	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010097	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010130	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010143	Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011014	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 43 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011024	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 8 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011027	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 70 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011054	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 1 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011064	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011076	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011081	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 60 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011082	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011087	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012382	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300019241	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019273	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022499	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022711	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031017	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031042	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300034653	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_03R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0006818J48916_1048272	3300003297	Peatlands Soil	LPFGLAILATFGFVLEILVVEEVLFSRCEYEICSAIYTLEDAILELRHSNCAPLST*
Ga0007410J51695_10134402	3300003574	Avena Fatua Rhizosphere	APFGLVFEVFVVEEVLFSRCKDEICSAINALENAILKLRHGNWSPF*
Ga0055432_102546561	3300004022	Natural And Restored Wetlands	PTGRTLALRLAGLAAFGLVLETLVVEEVLFSRCEDEIRSAIDAFEDAVLEIRHT*
Ga0058903_15349152	3300004103	Forest Soil	LGLVLEILVVEEVLFSRCEYKLCSAVYTREDAVLKLRHSNVAP*
Ga0058906_13494141	3300004134	Forest Soil	GFVLEILVVEEVLFSRCKYEICSAVHALEDAILELRHRNCAPFIDLN*
Ga0058883_15581962	3300004137	Forest Soil	LTLGLAVLAAFRLVLEILVVEEVLFSRCKYEIRSAVYALEDAILKLRHSNCAPLIDLNCTRI*
Ga0058897_100322321	3300004139	Forest Soil	LGLAVLAAFRLVLEILVVEEVLFSRCKYEIRSAVYAFKDAILELRHSNCAPLIDLN*
Ga0058897_110762632	3300004139	Forest Soil	LTALGFVLEILVVEEVLFSRCENELCSAVYTNEDAVLKLRHSNVAP*
Ga0068977_12930031	3300004468	Peatlands Soil	PFGLAILATFGFVLEILVVEEVLFSRCEYEICSAIYTLEDAILELRHSNCAPLST*
Ga0068967_13202862	3300004470	Peatlands Soil	FGLVLEILVVEEVLFSRCENKIRSAVYALEDAVLKFRHSNCAP*
Ga0068942_12046941	3300004559	Peatlands Soil	PFGLAILATFGFVLEILVVEEVLFSRCKDKICPAIYALEDAILELRHSNCAPLST*
Ga0068924_13581022	3300004608	Peatlands Soil	FGFVLEILVVEEVLFSRCENKICSAVCALEDAVLKLRHINFAP*
Ga0068930_10028643	3300004616	Peatlands Soil	GLAILATFGFVLEILVVEEVLFSRCKDKICPAIYALEDAILELRHSNCAPLST*
Ga0068953_10018542	3300004619	Peatlands Soil	TTLGFVLEVLVVEEVLFSRCKDEICPAINALENAILELRHSNCAPL*
Ga0058899_122645201	3300004631	Forest Soil	LTLGLAILAAFRLVLEILVVEEVLFSRCKYEIRSAVYALEDAILELRHSNCAPLST*
Ga0072324_13142222	3300004971	Peatlands Soil	TFGFVLEILVVEEVLFSRCKDEICPAIYALEDAILELRHSNCAPLST*
Ga0072329_13789872	3300004977	Peatlands Soil	LAALGLVLEILVVEEVLFSRCEYEICSAVYALEDAVLKLRHINVAP*
Ga0066388_1046357982	3300005332	Tropical Forest Soil	VLEILVVEEVLFSRCKYEICPAINALEDSILELRHSNCAPFELELLSD*
Ga0070738_100483081	3300005531	Surface Soil	ALQLAILAAFGLVLEVLVVEEVLFSRCEYEIRSAVHALEDAILKLRHSNCAPL*
Ga0075425_1025066401	3300006854	Populus Rhizosphere	LRLILEILVVEEVLFSRCKNKVGPAVTTREGPILKLRHINCAP*
Ga0105240_124453531	3300009093	Corn Rhizosphere	LALHLTGLAALRLVLETLVVEEVLFSRCEYEICSAIDALEDAVLEFRHT*
Ga0105241_126448521	3300009174	Corn Rhizosphere	LALGFAAFAPLGLVLEVLVVEEVLLSRCKGEICSAINALESTILKLRHGNWSPY
Ga0105248_113475061	3300009177	Switchgrass Rhizosphere	LALGLTVFAPFGLVFEVFVVEEVLFSRCKDEICSAINTLENAILKLRHGNWFLF*
Ga0105238_113953082	3300009551	Corn Rhizosphere	FGKARGRRTLAFGFAILTPLGFVFKILVVEEVLFSRCKDEICSAVNTLEDAILELRHSNCAPL*
Ga0116216_100303744	3300009698	Peatlands Soil	LPFGLAILATFGFVLEILVVEEVLFSRCEYEICSAIYTLEDAILELRHSNC
Ga0116216_104963121	3300009698	Peatlands Soil	GTLALGLAILTAFGFVLEILVVEEVLFSRCEYKLCSAVYTREDAVLKLRHSNVAP*
Ga0126373_121816162	3300010048	Tropical Forest Soil	RLAALGLVFEILVVEEVLFSRCKDEFCPAVYALENAVLEVRHS*
Ga0127480_11185972	3300010094	Grasslands Soil	ALALGLTVLAPFGLVFEVFVVEEVLFSRCKDEICSAINALENAILKLRHISCAPF*
Ga0127501_10086583	3300010097	Grasslands Soil	RTLALGLATLAAFGLVLKVFVVEEVLFSRCKYEICSAINALENAILKLRHGNWSPL*
Ga0127493_10409822	3300010130	Grasslands Soil	LGLTVLAALGLVLEVLIVEEVLFSRCENEICSAVHALKDAILKLRHGNWSPL*
Ga0126322_12927682	3300010143	Soil	LALRLAALAALGLVFEILVVEEVLFSRCEREVGSAINALENAILKLRHIN*
Ga0074045_102788791	3300010341	Bog Forest Soil	ALGLVLEILVVEEVLFSRCKDEICPAIYTLEDSILELRHSNCAPLST*
Ga0134125_111664043	3300010371	Terrestrial Soil	LALGFAAFAPLGLVLEVLVVEEVLLSRCKGEICSAINALESTILKLRHGNWSPL*
Ga0126381_1017165113	3300010376	Tropical Forest Soil	LGLAVFATLGFVLEVLVMEEMLFSRGKHEICAALRAFEDSILKLRHIHCAPLST*
Ga0134124_106400471	3300010397	Terrestrial Soil	LAFGFAILTPLGFVFEILVVEEVLFSRCKDEICSAIYTLEDAILELRHSNCAPL*
Ga0126352_10457131	3300010859	Boreal Forest Soil	LTLGFAILAAFRLVLEILVVEEVLFSRCKYEIRSAVYALEDAILELRHSNCAPLST*
Ga0138596_1075292	3300011014	Peatlands Soil	FGLAILATFGFVLEILVVEEVLFSRCEYEICSAIYTLEDAILELRHSNCAPL*
Ga0138530_1070601	3300011024	Peatlands Soil	LGFGKAPAGIPLALGLAILAALGFVLEILIVEEVLFSRCKYKICSAVYALKDAVLKLRHINVAP*
Ga0138530_1118821	3300011024	Peatlands Soil	LTLGLAILAAFRLVLEILVVEEVLFSRCEYEICSAIYTLEDAILELRHSNCAPLST*
Ga0138580_1195612	3300011027	Peatlands Soil	LALGLAGFTALRFVLKVLVVEEVLFSRCENKICSAVYALEDAVLKLRHINVAP*
Ga0138523_10630611	3300011054	Peatlands Soil	LPFGLAILATFGFVLEILVVEEVLFSRCEYEICSAIYTLEDAILELRHSNCAP
Ga0138525_11155382	3300011064	Peatlands Soil	LATFGFVLEILVVEEVLFSRCKYEIRSAVYALEDAILKLRHSNCAPLST*
Ga0138574_10491561	3300011076	Peatlands Soil	LTLGLAILAAFGLVLEILVVEEVLFSRCKYEIRSAVYALEDAILKLRHSNCAPLST*
Ga0138565_11916342	3300011078	Peatlands Soil	FGLAILATFGFVLEILVVEEVLFSRCKDKICPAIYALEDAILKLRHSNCAPLST*
Ga0138575_10631651	3300011081	Peatlands Soil	AALGLVLEILVVEEVLFSRCEDEIRSTVHAFEDAILKLRHSNCSRDRT*
Ga0138575_10791232	3300011081	Peatlands Soil	PFGLAILATFGFVLEILVVEEVLFSRCKDKICPAIYALEDAILKLRHSNCAPLST*
Ga0138575_11382121	3300011081	Peatlands Soil	RFGKTRTRTALALGLASLAALWFVLEILVVEEVLLSRCKYEICPAVCALENAVLKLRHINVAP*
Ga0138526_10446812	3300011082	Peatlands Soil	TLGLAILAAFGFVFEILVVEEVLFSRCEYEVRSAVYALEDAVLEIRHINCAPL*
Ga0138570_10636613	3300011087	Peatlands Soil	AILATFGFVLEILVVEEVLFSRCKDKICPAIYALEDAILELRHSNCAPLST*
Ga0150983_103657812	3300011120	Forest Soil	LTLGLAVLATLGFILEILVVEEVLLSRCEYEIRSAVYALEDAILKLGHGNCSPLFTYHLNL*
Ga0150983_130122452	3300011120	Forest Soil	FAVLAAFGLVLEILVVEEVLFSRCKYEICSAIYALEDAILKLRHSNCAPLST*
Ga0150983_133240661	3300011120	Forest Soil	LTLGFAILAAFRLVFEILVVEEVLFSRCKYEIRSAVYALEDAILELRHSNCAP
Ga0137364_105058071	3300012198	Vadose Zone Soil	PRRTLPLGFATFAALGLILEVLVVEEVLFSRCEYEIRSAIGALKDAVLKLRHSLLAPL*
Ga0150985_1022667112	3300012212	Avena Fatua Rhizosphere	FRLVFEVFVVEEVLFSRCKYEICSAINALENAILKLRHGNWSPY*
Ga0150985_1049217564	3300012212	Avena Fatua Rhizosphere	LAPFRLVFEVFVVEEVLFSRCKDEICSAIYALENAILKLRHGNWSPL*
Ga0150985_1104533312	3300012212	Avena Fatua Rhizosphere	RARRTLPFHLAGLATLGFVFKVLVVEEVLFSRCKYEICPAINPLENAILELRHSNCAP*
Ga0150985_1105538881	3300012212	Avena Fatua Rhizosphere	RARGALALGLTVFAPFGLVFEVFVVEEVLFSRCKDEICSAIYTLEYAILKLRHGNWSPL*
Ga0137372_105748271	3300012350	Vadose Zone Soil	CRRALTLGLAVLAAFRLVLEILVVEEVLFSRCEYEIRAAIHAFENAVLKLRHDLFPVTT*
Ga0137371_112457062	3300012356	Vadose Zone Soil	EARPRRTLPLGLATFAALGLVLEVFVVEEVLFSRCEYKIRSAICALKDAVLKLRHSLLAPL*
Ga0134038_10636361	3300012382	Grasslands Soil	LALGLTVLAALGLVLEVLIVEEVLFSRCENEICSAVHALKDAILKLRHGNWSPL*
Ga0134061_11383372	3300012399	Grasslands Soil	ALRLTGLAALGLVLEILVVEEVLFSRCEDEICSAIDALEDAVLEFRHT*
Ga0134055_13769551	3300012401	Grasslands Soil	CALALGLASFATLWFVFEILIVEEVLFSRGKNKIRSAIYALEDAVLEFRHT*
Ga0150984_1032969482	3300012469	Avena Fatua Rhizosphere	VFEVFVVEEVLFSRCKDEICSAINTLENAILKLRHGNWSPL*
Ga0150984_1105561741	3300012469	Avena Fatua Rhizosphere	ALGLTVLAPFWLVFEVFVVEEVLFSRCKDEICSAIYTLEYAILKLRHGNWSPL*
Ga0150984_1131567001	3300012469	Avena Fatua Rhizosphere	LALGFAILAPFRLVFEVFVMEEVLFSRCKDEICSAINALKNAILKLRHGNWSPL*
Ga0150984_1169406421	3300012469	Avena Fatua Rhizosphere	AFGFVFEILVVEEVLFSRCKYEICPAINALKDAILELRHSNCAPLST*
Ga0150984_1227908691	3300012469	Avena Fatua Rhizosphere	LALRLTGLAALGLVLEILVVEEVLFSRCEDEICSAIDALEDAVLEFRHT*
Ga0137410_116451312	3300012944	Vadose Zone Soil	LTLSLAILAAFRLVLEILVVEEVLFSRCEYELCSAVYTLENAVLELRHSNCAP*
Ga0164305_116115922	3300012989	Soil	LTPLAPFGLVFEVLVVEEVLFSRCKDEICSAINAFEYAILKLRHGNWSPF*
Ga0157371_114256342	3300013102	Corn Rhizosphere	FRFGESRTGRALALHFAVLAPFGLILEVLVVEEVLFSRCKYEICSAINTLENAILKLRHSNCAPLST*
Ga0157378_118945422	3300013297	Miscanthus Rhizosphere	HFAVLAPFRLILEVLVVEEVLFSRCKDEICSAINALKDAILKLRHSNCAPLST*
Ga0181523_100706011	3300014165	Bog	LALGLATLAALGLVLKVLVVVKVLFTRREYKVRAAVHALENAILKFRHNW
Ga0182024_1000020784	3300014501	Permafrost	LALGLAILTALGLVLEILVVEEVLFSRCEYEFCSAVYTREDAVLKLRHSNVAP*
Ga0182033_105300562	3300016319	Soil	LALGLAGLAALRLVLEVLVMEEVLFSRCEYEICSAVNALEDAILKLRHSNCAPLST
Ga0187793_11472141	3300019241	Peatland	LAGFAALGFVLEILVVEEVLFSRCEYEFCSAVNALEDAVLKIRHDDIAP
Ga0187793_14198452	3300019241	Peatland	LAGLAALGFVLEVLVVGEVLFSRCEYEIRSAVNALEDPVLKLRHSLCPVTN
Ga0187796_14395062	3300019264	Peatland	TTFGFVLEILVVEEVLFSRGENEIRPAIDTLENSILELRHSNCAPLST
Ga0187794_11522751	3300019273	Peatland	LTLDLTVFAPLGFVLEILVVEEVLFSRCEYEICSAVYALEDAVLKLRHIT
Ga0180113_13455672	3300020065	Groundwater Sediment	GKSRARGALALHLAVFAALGLILEILVVEEVLFSRCEDEICSAIYALENAILKLRHSNCAPFST
Ga0206353_101736821	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	LHLTGLAALRLVLETLVVEEVLFSRCEYEICSAIDALEDAVLEFRHT
Ga0213851_11240522	3300021860	Watersheds	LTLGLAVLAAFRLVLEILVVEEVLFSRCKYEICSAIYALEDAILKLRHSNCAPLSN
Ga0242641_10097192	3300022499	Soil	LTLGLAVLAAFRLVLEILVVEEVLFSRCKYEIRSAVYALEDAILELRHSNCAPLST
Ga0222729_10744931	3300022507	Soil	LALRLTRLAALGLVLKILVVEEVLFSRCEYEICPAVCTLEDAVLKLRHINVAP
Ga0222728_10485482	3300022508	Soil	LAAFRLVLEILVVEEVLFSRCKYKICSAVYTLEDAILKLRHSNCAPLST
Ga0242662_102659551	3300022533	Soil	LGVTTRGALAFGLAVLTTLGLVLEILVVEEVLFSRCEYKLCSAVYTREDAVLKLRHSNVA
Ga0242662_103386511	3300022533	Soil	AVLAAFRLVLEILVVEEVLFSRCKYEIRSAVYALEDAILELRHSNCAPFST
Ga0242674_10550472	3300022711	Soil	VTTRGTLALGLAVLTALGFVLEILVVEEVLFSRCEYELCSAVYTNEDAVLKLRHSNVAP
Ga0242653_10673382	3300022712	Soil	LTLSLAVLAAFWLVLEILVMEEVLFSRCKYEIRSAVYALEDAILKLRHSNCAPFIDLNCTELIMV
Ga0242678_10714881	3300022715	Soil	GTALALGLTRLAPFGFVLEILIVEEVLFSRCKYEICPAVCTLEDAVLKLRHINVAP
Ga0242666_10699732	3300022721	Soil	LALGLAVLTALGFVLEILVVEEVLFSRCEYELCSAVYTNEDAVLKLRHSNVAP
Ga0242657_10776922	3300022722	Soil	LTLGLAVLAAFRLVLEILVVEEVLFSRCKYEICSAVYALEDAILELRHSNCAPLST
Ga0242654_103508281	3300022726	Soil	LALRLTGLAALGLVLAILVVEEMLFSRCEDETCSAIDALEDAVLEFRHT
Ga0207701_107408331	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LGLVLEILVVEEVLFSRCEHEIRSAIDALENAVLEIRHT
Ga0207686_102207991	3300025934	Miscanthus Rhizosphere	AILTPLGFVFEILVVEEVLFSRCKDEICSAIYTLEDAILELRHSNCAPL
Ga0207670_106477911	3300025936	Switchgrass Rhizosphere	LAGLAALRLVLEILVVEEMLFSRCEYEIRSAIDALENAVLEIRHT
Ga0207658_117943102	3300025986	Switchgrass Rhizosphere	RGALPLGLTILAAFRLVFEILIVEEVLFSRCKYKICSAIHALEDAILELRHSNCALLST
Ga0207683_105678043	3300026121	Miscanthus Rhizosphere	ALGLILEVLVVEEVLFSRCKDEICSAIDALEDAVLEFRHTRFST
Ga0209517_105878021	3300027854	Peatlands Soil	TGTRTTLALGLAGFTALRFVLKVLVVEEVLFSRCENKICSAVYALEDAVLKLRHINVAP
Ga0268266_112441391	3300028379	Switchgrass Rhizosphere	LPLGLTILAAFRLVFEILIVEEVLFSRCKYKICSAIHALEDAILELRHSNCA
Ga0268265_113230892	3300028380	Switchgrass Rhizosphere	LALGLTYLTALGLIPEVLVVEEVLFSRCEYEIRSAIDALENAVLEIRHT
Ga0222749_108195971	3300029636	Soil	LGLVLEILVVEEVLFSRCEHEIRSAVYTLEDAVLKLRHINSAP
Ga0311337_115104712	3300030000	Fen	TGLAALGLVLEILVVEEMLLPRCEDEIRSAIDAFEDAVLEIRHT
Ga0265460_109261362	3300030740	Soil	LALGLTILTALGLILEILVVEEVLFSRCEYELCSAVYTREDAVFKLRHSNVAP
Ga0308178_10538762	3300030990	Soil	LTLSLAILAAFRLVLEILVVEEVLFSRCEYKIRAAIDAFENAVLKLRHGLFPVISSSRFI
Ga0265744_1123252	3300031017	Soil	RFRETRTRTALALGLASLAALWFVLEILVVEEVLFSRCKNEICPAVCALENAVLKLRHINVAP
Ga0265749_1017032	3300031042	Soil	LTLGFAILAAFRLVLEILVVEEVLFSRCKYEIRSAVYALEDAILELRHSNCAPLST
Ga0308197_103020281	3300031093	Soil	LGLATLTALGLVLEILVVEEVLFSRCEYEIRSAVCALKDAVLKLRHSL
Ga0170824_1101267651	3300031231	Forest Soil	KARGRGALTLSLAILAAFRLVLEILVVEEVLFSRCKYKICSAVYTLKDAILKLRHSNCAPLST
Ga0308194_101275781	3300031421	Soil	LTLSLAILAAFRLVLEILVVEEVLFSRCKYKICSAVYTLEDAILKLRHSNCAPLST
Ga0170820_157182511	3300031446	Forest Soil	GALPLGLTILAAFRLVFEILIVEEVLFSRCKYKICSAIHALEDAILELRHSNCAPLST
Ga0170819_129406701	3300031469	Forest Soil	LALGLAGLAAFGLVLKILVVEEVLFSRGENKICSAIRAFENAILKLRHTCAP
Ga0311301_112793611	3300032160	Peatlands Soil	GALTLGLAVLAAFRLVLKILVVEEVLFSRCKYEIRSAVYALEDAILKLRHSNCAPLST
Ga0335085_10000012456	3300032770	Soil	LALRFAVLAAFGFVFEILIVKKVLFTRGEYEICSAVYALKDSILKLRHINVAPLST
Ga0335084_119539531	3300033004	Soil	VFAALGFILEVLVMEEMLFSRCKHEICAALSAFEDSILKLRHIHCAPSST
Ga0316599_221301_2_166	3300034653	Untreated Peat Soil	LALTRLAAFGLILEILVVEEVLLSRGEYKLSSAVYALEDSVLKLSHSACAPFPT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079720

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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