Metagenome / Metatranscriptome Family F079862

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079862
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	78 residues
Representative Sequence	LKRIVFTIRRTAHIVVASIAVELALDFGAGALAVILAPYVGEWVYVAAGVIVIGSLPVLGLNIARVARREWKLH
Number of Associated Samples	91
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.26 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	78.26 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.304 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost (14.783 % of family members)
Environment Ontology (ENVO)	Unclassified (20.870 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.783 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.63% β-sheet: 0.00% Coil/Unstructured: 31.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00999	Na_H_Exchanger	4.35
PF02040	ArsB	3.48
PF00072	Response_reg	2.61
PF06841	Phage_T4_gp19	2.61
PF00582	Usp	1.74
PF02737	3HCDH_N	1.74
PF00440	TetR_N	1.74
PF03631	Virul_fac_BrkB	1.74
PF05638	T6SS_HCP	1.74
PF00089	Trypsin	1.74
PF12847	Methyltransf_18	0.87
PF00294	PfkB	0.87
PF13527	Acetyltransf_9	0.87
PF04075	F420H2_quin_red	0.87
PF01569	PAP2	0.87
PF00491	Arginase	0.87
PF02545	Maf	0.87
PF13286	HD_assoc	0.87
PF03572	Peptidase_S41	0.87
PF00486	Trans_reg_C	0.87
PF02073	Peptidase_M29	0.87
PF01565	FAD_binding_4	0.87
PF00725	3HCDH	0.87
PF00215	OMPdecase	0.87
PF13607	Succ_CoA_lig	0.87
PF01547	SBP_bac_1	0.87
PF00990	GGDEF	0.87
PF13358	DDE_3	0.87
PF03772	Competence	0.87
PF00484	Pro_CA	0.87
PF07883	Cupin_2	0.87
PF07730	HisKA_3	0.87
PF07690	MFS_1	0.87
PF08734	GYD	0.87
PF03725	RNase_PH_C	0.87
PF01865	PhoU_div	0.87
PF04545	Sigma70_r4	0.87
PF02641	DUF190	0.87
PF10604	Polyketide_cyc2	0.87
PF06803	DUF1232	0.87
PF06772	LtrA	0.87
PF00950	ABC-3	0.87
PF00274	Glycolytic	0.87
PF01230	HIT	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	4.35
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	4.35
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	4.35
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	4.35
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	4.35
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	3.48
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	3.48
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	2.61
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.74
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	1.74
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.74
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	1.74
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.74
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	1.74
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	1.74
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	1.74
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.87
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.87
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87
COG0609	ABC-type Fe3+-siderophore transport system, permease component	Inorganic ion transport and metabolism [P]	0.87
COG0658	DNA uptake channel protein ComEC, N-terminal domain	Intracellular trafficking, secretion, and vesicular transport [U]	0.87
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	0.87
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG1108	ABC-type Mn2+/Zn2+ transport system, permease component	Inorganic ion transport and metabolism [P]	0.87
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	0.87
COG1392	Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 family	Inorganic ion transport and metabolism [P]	0.87
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.87
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	0.87
COG2309	Leucyl aminopeptidase (aminopeptidase T)	Amino acid transport and metabolism [E]	0.87
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	0.87
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	0.87
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.87
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.87
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.87
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	0.87
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.87
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.87
COG4606	ABC-type enterochelin transport system, permease component	Inorganic ion transport and metabolism [P]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.30 %
Unclassified	root	N/A	8.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	74.78 %
Unclassified	root	N/A	8.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70.43 %
Unclassified	root	N/A	8.70 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	53.04 %
Unclassified	root	N/A	8.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	46.09 %
Unclassified	root	N/A	8.70 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.74 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.87 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.09 %
Unclassified	root	N/A	8.70 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	1.74 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.87 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.87 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.09 %
Unclassified	root	N/A	8.70 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.74 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.87 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	0.87 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.09 %
Unclassified	root	N/A	8.70 %
Kribbella soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	1.74 %
unclassified Cellulomonas	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas	0.87 %
unclassified Blastococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus	0.87 %
Mycolicibacterium sediminis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium sediminis	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	46.09 %
Unclassified	root	N/A	8.70 %
Kribbella soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	1.74 %
Blastococcus sp. TML/M2B	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. TML/M2B	0.87 %
Cellulomonas sp. P24	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. P24	0.87 %
Mycolicibacterium sediminis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium sediminis	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_7430338	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
2170459018\|G1P06HT01CTMYE	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
2170459018\|G1P06HT02GZ2TY	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	717	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100800907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	946	Open in IMG/M
3300000956\|JGI10216J12902_100516511	Not Available	1012	Open in IMG/M
3300000956\|JGI10216J12902_104795612	Not Available	1349	Open in IMG/M
3300000956\|JGI10216J12902_108045753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	846	Open in IMG/M
3300001536\|A1565W1_10172540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300001538\|A10PFW1_10306837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1426	Open in IMG/M
3300001538\|A10PFW1_10481019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300004479\|Ga0062595_100390238	Not Available	992	Open in IMG/M
3300005176\|Ga0066679_10781940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300005294\|Ga0065705_10260284	All Organisms → cellular organisms → Bacteria → Proteobacteria	1164	Open in IMG/M
3300005329\|Ga0070683_101240845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300005336\|Ga0070680_100024311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4838	Open in IMG/M
3300005336\|Ga0070680_100057720	All Organisms → cellular organisms → Bacteria	3173	Open in IMG/M
3300005339\|Ga0070660_100001527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15890	Open in IMG/M
3300005437\|Ga0070710_11198791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300005518\|Ga0070699_101268413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300005529\|Ga0070741_10033925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6936	Open in IMG/M
3300005529\|Ga0070741_11026934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300005535\|Ga0070684_100134524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2232	Open in IMG/M
3300005538\|Ga0070731_10000780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38096	Open in IMG/M
3300005538\|Ga0070731_10245874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1187	Open in IMG/M
3300005538\|Ga0070731_10633022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
3300005540\|Ga0066697_10195823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1201	Open in IMG/M
3300005542\|Ga0070732_10034343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2898	Open in IMG/M
3300005542\|Ga0070732_10207388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300005546\|Ga0070696_100950275	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300005558\|Ga0066698_10926781	All Organisms → cellular organisms → Bacteria → Terrabacteria group	556	Open in IMG/M
3300005614\|Ga0068856_101712136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300006796\|Ga0066665_10404554	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1126	Open in IMG/M
3300006796\|Ga0066665_10576428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	910	Open in IMG/M
3300009012\|Ga0066710_100102099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3840	Open in IMG/M
3300009012\|Ga0066710_100827519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1421	Open in IMG/M
3300009093\|Ga0105240_10989011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	900	Open in IMG/M
3300009137\|Ga0066709_100223008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2498	Open in IMG/M
3300009137\|Ga0066709_100912040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1281	Open in IMG/M
3300009177\|Ga0105248_10989937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	950	Open in IMG/M
3300009823\|Ga0105078_1033017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	640	Open in IMG/M
3300010373\|Ga0134128_11441755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	758	Open in IMG/M
3300010373\|Ga0134128_11871787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	660	Open in IMG/M
3300010373\|Ga0134128_13095038	Not Available	511	Open in IMG/M
3300010396\|Ga0134126_13055754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300010999\|Ga0138505_100006796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1228	Open in IMG/M
3300011000\|Ga0138513_100014572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1027	Open in IMG/M
3300011003\|Ga0138514_100004887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1954	Open in IMG/M
3300011999\|Ga0120148_1118935	Not Available	503	Open in IMG/M
3300012003\|Ga0120163_1137430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300012010\|Ga0120118_1027725	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300012011\|Ga0120152_1039228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1604	Open in IMG/M
3300012014\|Ga0120159_1016239	All Organisms → cellular organisms → Bacteria	2873	Open in IMG/M
3300012201\|Ga0137365_10564827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300012398\|Ga0134051_1157622	All Organisms → cellular organisms → Bacteria → Terrabacteria group	717	Open in IMG/M
3300012930\|Ga0137407_11872136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300012938\|Ga0162651_100011442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1100	Open in IMG/M
3300012976\|Ga0134076_10198057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	841	Open in IMG/M
3300012984\|Ga0164309_11074731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella soli	668	Open in IMG/M
3300013100\|Ga0157373_11443475	Not Available	524	Open in IMG/M
3300013104\|Ga0157370_11759830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300013105\|Ga0157369_10772052	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300013105\|Ga0157369_12536794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	519	Open in IMG/M
3300013294\|Ga0120150_1078262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	629	Open in IMG/M
3300013501\|Ga0120154_1016859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1943	Open in IMG/M
3300013764\|Ga0120111_1111280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300013768\|Ga0120155_1099110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	815	Open in IMG/M
3300013770\|Ga0120123_1099220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300013772\|Ga0120158_10159959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1232	Open in IMG/M
3300013772\|Ga0120158_10303256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	772	Open in IMG/M
3300013772\|Ga0120158_10356516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. P24	686	Open in IMG/M
3300014058\|Ga0120149_1189051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300015160\|Ga0167642_1003070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3227	Open in IMG/M
3300015374\|Ga0132255_105727762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300017966\|Ga0187776_10050080	Not Available	2375	Open in IMG/M
3300018027\|Ga0184605_10286304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	747	Open in IMG/M
3300018054\|Ga0184621_10169950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300018064\|Ga0187773_10167290	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300018071\|Ga0184618_10132737	Not Available	1005	Open in IMG/M
3300018073\|Ga0184624_10087094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium sediminis	1321	Open in IMG/M
3300018429\|Ga0190272_10963778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300018482\|Ga0066669_10762343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	855	Open in IMG/M
3300020070\|Ga0206356_11600492	Not Available	785	Open in IMG/M
3300021080\|Ga0210382_10089090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1272	Open in IMG/M
3300022694\|Ga0222623_10356985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300022756\|Ga0222622_10012933	All Organisms → cellular organisms → Bacteria	4031	Open in IMG/M
3300022756\|Ga0222622_10086701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1887	Open in IMG/M
3300025912\|Ga0207707_10010931	All Organisms → cellular organisms → Bacteria	7895	Open in IMG/M
3300025912\|Ga0207707_10011540	All Organisms → cellular organisms → Bacteria	7693	Open in IMG/M
3300025917\|Ga0207660_10131171	All Organisms → cellular organisms → Bacteria	1908	Open in IMG/M
3300025919\|Ga0207657_10007058	All Organisms → cellular organisms → Bacteria	11541	Open in IMG/M
3300025920\|Ga0207649_11205853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300026116\|Ga0207674_10014089	All Organisms → cellular organisms → Bacteria	8834	Open in IMG/M
3300027163\|Ga0209878_1042056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300027842\|Ga0209580_10063283	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1746	Open in IMG/M
3300027869\|Ga0209579_10000875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	26952	Open in IMG/M
3300027869\|Ga0209579_10048307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2272	Open in IMG/M
3300027869\|Ga0209579_10167016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1176	Open in IMG/M
3300028715\|Ga0307313_10092362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	916	Open in IMG/M
3300028722\|Ga0307319_10111514	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300028744\|Ga0307318_10364977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300028824\|Ga0307310_10131779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1140	Open in IMG/M
3300028878\|Ga0307278_10000128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37438	Open in IMG/M
3300028878\|Ga0307278_10029938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2495	Open in IMG/M
3300028878\|Ga0307278_10178825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	948	Open in IMG/M
3300028881\|Ga0307277_10001120	All Organisms → cellular organisms → Bacteria	10435	Open in IMG/M
3300028881\|Ga0307277_10013741	All Organisms → cellular organisms → Bacteria	3134	Open in IMG/M
3300031170\|Ga0307498_10345452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300031753\|Ga0307477_10969592	All Organisms → cellular organisms → Bacteria → Terrabacteria group	559	Open in IMG/M
3300031754\|Ga0307475_10236577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1463	Open in IMG/M
3300031962\|Ga0307479_11417322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. TML/M2B	653	Open in IMG/M
3300032180\|Ga0307471_101786806	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300032770\|Ga0335085_10725604	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300032783\|Ga0335079_10001695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25140	Open in IMG/M
3300032893\|Ga0335069_10796938	Not Available	1065	Open in IMG/M
3300032898\|Ga0335072_10079466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4268	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.83%
Host-Associated	Host-Associated	10.43%
Engineered	Engineered	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.87%
Plants	Host-Associated → Plants	10.43%
Aquatic	Environmental → Aquatic	6.96%
Solid Waste	Engineered → Solid Waste	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.83%
Sediment	Environmental → Aquatic → Sediment	6.09%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.61%
Grass	Engineered → Solid Waste → Grass	1.74%
Freshwater	Environmental → Aquatic → Freshwater	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.74%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.22%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.61%
Sand	Environmental → Terrestrial → Soil → Sand	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.74%
Composting	Engineered → Solid Waste → Grass → Composting	1.74%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.43%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	14.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.48%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.61%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.74%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	14.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.43%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.35%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.48%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.74%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.74%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	1.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011999	Permafrost microbial communities from Nunavut, Canada - A28_65cm_6M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013501	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0.25M	Environmental	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300013768	Permafrost microbial communities from Nunavut, Canada - A35_65cm_0M	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300015160	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027163	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0757.00007970	2162886013	Switchgrass Rhizosphere	VVLASIAVELALDFGAGALAIILAPYIGTWVYAVAGVVVIGSLPILGLNIARVARREWKRHHTLT
2MG_02232630	2170459018	Switchgrass, Maize And Mischanthus Litter	LQRVIFTIRRTAHVVVASVVVELALDFGAGALAVVLAPHVGNWVYAFAGVIVVGSLPVLGLNIARVARREWRRHRFADLPQ
2MG_01652410	2170459018	Switchgrass, Maize And Mischanthus Litter	LHRIIFTIRRTAHVVVASIAVELALDFGAGAVAVILAPFVGEWVYAAAGVIVIGSLPILGLNIVRVARRE
INPhiseqgaiiFebDRAFT_1008009072	3300000364	Soil	LHRIIYTVRRTAHVVVASIAVELALDFGASAVAVVLAPYVGEWIYAVAGVIVIGSLPLLGLNIARVARREWKRHSREAAAREFDDA*
JGI10216J12902_1005165112	3300000956	Soil	RREDAPPPKGGALKRIIYTARRTAHIVVASIAVELALDFGAGALAVVLAPYLGEWVYAVAGVIVVGSLPVLGLNIARVARREWRRHSSAAGAAQTNDEV*
JGI10216J12902_1047956122	3300000956	Soil	LQRIIFTARRTAHLVIASIAVELALDFGAGALAVLIAPYVGEWVYVAAGVIVIGSLPVLGLNIARVARREWRRHSTSADQGGSPP*
JGI10216J12902_1080457532	3300000956	Soil	LHRIIFTIRRTAHVVVVSIAVELALDFGAGAVAVILAPFVGEWVYAAAGVIVIGSLPILGLNIVRVARREWRRHQRLPS*
A1565W1_101725402	3300001536	Permafrost	HIVAASIAVELALDFGAGALAVILAPSLGDWVYVVASVIVIGSLPVLGLNIARVARREWKRHRLPM*
A10PFW1_103068373	3300001538	Permafrost	LNRIVRTIRHTAHVVVASVVVELALDFGAGAVAVVLAPYVGRWVYAVAGVIVFGSLPVLGLNIARVGRREWRRHHH*
A10PFW1_104810191	3300001538	Permafrost	LKRIVFTIRRTAHVVVASVAVELALDFGAGAVAVILAPYVGTWVYAVAAVIVFGSLPVLGLNIARIARREWKRHQRLPM*
Ga0062595_1003902381	3300004479	Soil	TPLWSLRRRKDAPKGGALQRIIFTIHRTLHVVVASIAVELALDFGAGALAVILAPYLGTWVYAVAGVIVIGSLPVLALNVARVARREWKRHRVMP*
Ga0066679_107819401	3300005176	Soil	VEPLRFHYPRTAHIVVAGVALEFALEFGAGAVTVILARRVGDWVYVAASVVVVGSLPVLGLNIARVARREWRRHRLSV*
Ga0065705_102602842	3300005294	Switchgrass Rhizosphere	LQRIVFTIRRTLSVVLASIAVELALDFGAGALAIILAPYIGTWVYAVAGVVVIGSLPILGLNIARVARREWKRHHTLT*
Ga0070683_1012408451	3300005329	Corn Rhizosphere	LNRVIVTIRRTAHVVVASIVLELILDFGAGALAVVLAPYVGNWVYAVAGVIVVGSLPVLGLNIA
Ga0070680_1000243113	3300005336	Corn Rhizosphere	LNRIILTVRRTAHVVVASVLLELALDFGAGAVAVVIAPYTGRWVYAAAGVIVIGSLPVLGLNIARVARREWRRHHSSHESV*
Ga0070680_1000577204	3300005336	Corn Rhizosphere	LQQIVFTVRRTAHVVVASVLLELALDVGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSSG*
Ga0070660_10000152711	3300005339	Corn Rhizosphere	LNRIILTVRRTAHVVVASVLLELALDFGAGAVAVVIAPYTGRWVYAAAGVIVIGSLPVLGLNIARVARREWRRHHSSPRSDTVS*
Ga0070710_111987911	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LQRVIFTIRRTAHVVVASVVVELALDFGAGALAVVLAPHVGNWVYAFAGVIVAGSLPVLGLNIARVARREWRRHRFADLPQ*
Ga0070699_1012684131	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ESEEAGGRAPPKGGALKRIVFTIRRTAHVVVASVAVELALDFGAGALAVVLAPRVGDWVYAVAGVIVVGSMPVLGLNIARVARREWRAHRPLRHESRT*
Ga0070741_100339256	3300005529	Surface Soil	VVASVAVELTLDFGAGALAVILAPRVADWVYVAASVVVVGSLPVLGLNIARVARREWRRHRLQV*
Ga0070741_110269342	3300005529	Surface Soil	LNRIVFTIRRTAHVVVASVAVELALDFGAGALAVVLAPHLGDWVYAVAGVIVVGSLPVLGLNVARVARREWRANHRRHASRT*
Ga0070684_1001345244	3300005535	Corn Rhizosphere	LNRVIVTIRRTAHVVVASIVLELILDFGAGALAVVLAPYVGNWVYAVAGVIVVGSLPVLGLNIARVAHREWHR*
Ga0070731_1000078023	3300005538	Surface Soil	LERVIFTIRRTAHVVVASFLVELALDLGAGALAVILAPSVGNWVYAAAGVIVVGSLPVLGLNIARVARREWRRHQFANLS*
Ga0070731_102458742	3300005538	Surface Soil	LHRVIFTLRRTARTVAASVVLELALDLGASAVAVALAPYVGNWIYVAAGVIVVGSMPVLSLNIARVARREWKRHQAPH*
Ga0070731_106330222	3300005538	Surface Soil	LHRVMFTLRRTARTVAASVVLELALDLGASAVAVALAPYVGNWIYVAAGVIVVGSMPVLSLNIARVARREWKRHQAPH*
Ga0066697_101958232	3300005540	Soil	LKRIVFTIRRTAHIVVASVVVELALDFGAGALAVILAPFLGEWVYLAAGVIVVGSLPVLSLNIARVARREWKRHHRMPT*
Ga0070732_100343434	3300005542	Surface Soil	LKRVLFTIRRTAHVVVASVVVELALDFGAGALAVVLAPLLGGWVYAVAGVIVVGSLPVLGLNVARVGRREWRRHRLAGAQTRANRALR*
Ga0070732_102073882	3300005542	Surface Soil	LQRIVFTIRRTAHIVLASVALELALDFGAGAAAVILAPRIGDWVYVAASVVVVGSLPILGLNIARVARREWRRHRLHV*
Ga0070696_1009502751	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LRRREDAPKGGALQRIVFTIRHTLSVVLASIAVELAVDFGAGALAIILAPYLGTWVYAVAGVIVIGSLPVLGLNIARVTRREWKRHRVMP*
Ga0066698_109267812	3300005558	Soil	ALNRIIFTLRRTIHVVAASIALELALDFGAGALAVALAPFVGEWVYVAAGVIVIGSLPVLGLNIARVARREWKRHQLTSWR*
Ga0068856_1017121361	3300005614	Corn Rhizosphere	MESEEAGGRAPPKGGALKRIVFTIRRTAHIVVASVAVELALDFGAGALAVVLAPRVGDWVYAVAGVIVVGSLPVLGLNVARVARREWRAHHRQ*
Ga0066665_104045541	3300006796	Soil	TAHIVVAIVAVELALDFGAGAAAVILAPRVGDWVYVVASVVVVGSLPVLGLNIARVARREWRRQRLHV*
Ga0066665_105764282	3300006796	Soil	LQRIVFTIRRTAHVVAASIAVELALDFGAGALAVILAPILGEWVYVAAGVIVVASLPVLGLNVARVARR
Ga0066710_1001020995	3300009012	Grasslands Soil	LQRIVFTIRRTAHVVAASIAVELALDFGAGALAVILAPILGEWVYVAAGVIVVASLPDLGLNVACVARREWKRNHRLPS
Ga0066710_1008275193	3300009012	Grasslands Soil	LKRIIFTFRHTLHIVVASIAVELGLDFGAGATAAILAPFVGAWIYGLAGVIVVGSLPFLGLNVARVARREWRRHRLIADD
Ga0105240_109890112	3300009093	Corn Rhizosphere	LSRIVFTIRRTAHVVVASVAVELALDFGAGALAVLLAPHVGDWVYAVAGVIVVGSLPVLGLNVARVARREWRAHHRQ*
Ga0066709_1002230082	3300009137	Grasslands Soil	LQRIVFTIRRTAHVVAASIAVELALDFGAGALAVILAPILGEWVYVAAGVIVVASLPVLGLNVARVARREWKRNHRLPS*
Ga0066709_1009120402	3300009137	Grasslands Soil	LKRIIFTVRHTLHIVVASIAVELGLDFGAGATAAILAPFVGAWIYGLAGVIVVGSLPFLGLNIARVARREWRRHRLIAEH*
Ga0105248_109899372	3300009177	Switchgrass Rhizosphere	LNRIIYTARHTAHVVVASIAVELALDFGAGALAIVVAPYLGDWVYAVAGVIVIGSLPVLGLNVARVARREWKQHRSAAGAAASPSDEL*
Ga0105078_10330172	3300009823	Groundwater Sand	LQRIVFTIRRTLHVVVASIAVELALDFGAGALAVILAPYVGTWVYAVAGVIVIGSLPVLGLNIARIARREWKRHRVMP*
Ga0134128_114417551	3300010373	Terrestrial Soil	LNRIILTVRRTAHVVVASVLLELALDFGAGAVAVVIAPYTGRWVYAAAGVIVIVSLPVLGLNIARVARREWRRHHSSHESV*
Ga0134128_118717872	3300010373	Terrestrial Soil	LKRIVFTIRRTAHIVVASVAVELALDFGAGALAVVLAPRVGDWVYAVAGVIVVGSMPVLGLNIARVARREWRAHRPLRHESRT*
Ga0134128_130950382	3300010373	Terrestrial Soil	VLGSILLELVLDFGAGAAAVVLAPYVGSWVYAVAGVIVVGSMPVLSLNIARVA
Ga0134126_130557542	3300010396	Terrestrial Soil	MQRVISTIRSTAHVVVASIVVELALDFGAGAAAVVLAPYVGNWVYAVAGVIVFGSLPVLSLNIARVARREWRRHHSADFS*
Ga0138505_1000067963	3300010999	Soil	LKRIVFTIRRTAHIVVASVVVELALDFGAGALAVILAPLLGEWVYLAAGVVVIGSLPILGLNIARVARREWKRHHRMPT*
Ga0138513_1000145722	3300011000	Soil	LKRIVFTIRRTAHIVVASVVVELALDFGAGALAVILAPLLGEWVYLAAGVVVIGSLPILGLNIARVARREWKRHHRLPT*
Ga0138514_1000048873	3300011003	Soil	LQRIVFTVRRTAHVVAASIAVELALDFGAGALAVILAPFVGEWVYVAAGVIVIGSLPVLGLNIARVARREWKRHHRMSP*
Ga0120148_11189351	3300011999	Permafrost	LHRIVFTVRRTARIVVVSVVVELALDFGAGAVAIILAPRVGDWVYAVASVVVVGSLSVLGLNVGRVARREWRRHHLHV*
Ga0120163_11374301	3300012003	Permafrost	LKRIVFTIRHTAHVVAASIAVELALDFGAGALAVILAPHVGNWVYVVASVIVVGSLPVLGLNIARVARREWKRHRLPM*
Ga0120118_10277251	3300012010	Permafrost	RIVVASVVVELALDFGAGAVAIILAPRVGDWVYAVASVVVVGSLPVLGLNVGRVARREWRRHHLHV*
Ga0120152_10392281	3300012011	Permafrost	LKRIVFTIRRTAHIVVASIAVELALDFGAGAVAVILAPYVGEWVYVAAGVIVFGSLPVLGLNIARVARREWKPHRLPT*
Ga0120159_10162395	3300012014	Permafrost	LKRIVFTIRRTAHIVVASIAVELALDFGAGAVAVILAPYVGEWVYVAAGVIVFGSLPVLGLNIARVARREWKRHRLPT*
Ga0137365_105648272	3300012201	Vadose Zone Soil	LKRIVFTIRRTAHIVVASVALELALDFGVGAAAVILAPRVGDWVYVAASVVVVGSLPVLGLNIGRVARREWRRHRLHV*
Ga0134051_11576222	3300012398	Grasslands Soil	LNRIIFTLRRTIHVVAASIALELALDFGAGALAVALAPFVGEWVYVAAGVIVIGSLPVLGLNIARVARREWKRHQLTSWR*
Ga0137407_118721363	3300012930	Vadose Zone Soil	AVELALDFSAGALAVVLAPYLGDWVYAVAGVIVVGLMPVLGLNIARVARREWKRHSSASGAAPTSDEV*
Ga0162651_1000114422	3300012938	Soil	LKRIVFTIRRTAHIVVASVVVELALDFGAGALAVILAPLLGEWVYLAAGLVVIGSLPILGLNIARVARREWKRHHRMPT*
Ga0134076_101980571	3300012976	Grasslands Soil	LKRIVFTIRRTAHIVVASVVVELALDFGAGALAVILAPFLGEWVYVAAGVIVVGSLPVLSLNIARVARREWKRHHRMPT*
Ga0164309_110747311	3300012984	Soil	GGALKRIIYTARRTAHVVVASIAVELALDFGAGALAIVVAPYLGDWVYAVAGVIVIGSLPVLGLNVARVARREWKQHRSAAGAAASPSDEL*
Ga0157373_114434751	3300013100	Corn Rhizosphere	LNRIILTVRRTAHVVVASVLLELALDFGAGAGAVVIVPYTGRWVYAAAGVIVIGSLPVLGLNIARVARREW
Ga0157370_117598301	3300013104	Corn Rhizosphere	LQQIVFTVRRTARVVVASVLLELALDVGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSSG*
Ga0157369_107720521	3300013105	Corn Rhizosphere	IVLTVRRTAHVVASVLLELALDFGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSSG*
Ga0157369_125367941	3300013105	Corn Rhizosphere	KDAPPPKGGALQRIVFTVRRTAHIVVASVAVELALDFGAGALAVILAPHLGNWVYVAASLVVVGSLPVLGLNIARVARREWRRHQTHG*
Ga0120150_10782621	3300013294	Permafrost	LKRIVFTIRHTAHIVAASIAVELALDFGAGALAVILAPHVGNWVYVVASVIVVGSLPVLGLNIARVARREWKRHRLPM*
Ga0120154_10168591	3300013501	Permafrost	LKRIVFTIRRTAHVVVASVAVELALDFGAGAVAVILAPYVGTWVYAVAAVIVFGSLPVLGLNIARIARREWKRHQ
Ga0120111_11112801	3300013764	Permafrost	LNRIVRTIRRTAHVVVASVVVELALDFGAGAVAVVLAPYVGRWVYAVAGVIVFGSLPVLGLNIARVGRREWRRHHH*
Ga0120155_10991101	3300013768	Permafrost	LKRIVFTIRHTAHVVAASIAVELALDFGAGALAVILAPSLGDWVYVVASVIVIGSLPVLGLNIARVARREWKRHRLPM*
Ga0120123_10992201	3300013770	Permafrost	LKRIVFTIRHTAHIVAASIAVELALDFGAGALAVILAPFVGNWVYIVASVIVIGSLPVLGLNIARVARREWRRHHSLTQTD*
Ga0120158_101599591	3300013772	Permafrost	LKRIVFTIRRTAHIVVASIAVELALDFGAGAVAVILAPYVGEWVYVAAGVIVFGSLPVLGLNIARVARRG*
Ga0120158_103032563	3300013772	Permafrost	LHRIVFTVRRTARIVVASVVVELALDFGAGAVAIILAPRVGDWVYAVASVVVVGSLPVLGLNVGRVARREWRRHHLHV*
Ga0120158_103565161	3300013772	Permafrost	SEMESEEAGGRAPPKGGALKRIVFTIRRTAHIVVASVAVELALDFGAGALAVLFAPYLGDWVYIVASVVVVGSLPVLGLNIGRVARREWRRHHLHT*
Ga0120149_11890511	3300014058	Permafrost	VVASVAVELALDFGAGAVAVILAPYVGTWVYAVAAVIVFGSLPVLGLNIARIARREWKRHQRLPM*
Ga0167642_10030703	3300015160	Glacier Forefield Soil	LERVISTIRSTAHVVVASIALELALDFGAGAAAVVLAPHVGNWIYAAAGVVVVGSLPVLGLNIARVARREWRRHHSVR*
Ga0132255_1057277621	3300015374	Arabidopsis Rhizosphere	LHRIIVTIRRTAHVVVASVLAELALDFGAGAVAVVIAPYVGRWVYVAAAVIVFGSLPLLSLNIARVARKEWRRHHHLAGRPAEPPPRSPD*
Ga0187776_100500802	3300017966	Tropical Peatland	LRRIWLTVRHTAHIVLASIAVELALDFGAGAAAVVLARFVGNWVYAVASVIVIASIPVLSLNVVRVARREWSRHRLPTELLL
Ga0184605_102863042	3300018027	Groundwater Sediment	LQRIIFTIRRTLQVVVASIAVELALDFGAGALAVILAPYLGTWVYAVAGVIVIGSLPVLGLNIARVARREWKRHRVMP
Ga0184621_101699502	3300018054	Groundwater Sediment	LKRIVFTIKRTAHVVVASVVVELALDFGAGAAAAVAAPYVGRWVYAVAGAIVVGSLPLLALNIARVARHEW
Ga0187773_101672901	3300018064	Tropical Peatland	TIRRTAHIVLASVAIELGLDFGAGATAVIIEPFVGKWVYVAASVIVIGSLPVLSLNIARVARREWHRHAG
Ga0184618_101327371	3300018071	Groundwater Sediment	LKRIVFTIPHTAHVVAASIAIELALDFGAGALAVILAPYLGNWVYVVASVIVVGSLPLLGLNIARVA
Ga0184624_100870942	3300018073	Groundwater Sediment	LKRIVFTIKRTAHVVVASVVVELALDFGAGAAAAVAAPYVGRWVYAVAGAIVVGSLPLLALNIARVARHEWKRHHLVDARAAAP
Ga0190272_109637781	3300018429	Soil	LQRIIFTIRRTLHVVVASIAVELALDFGAGALAVILAPYVGTWVYAVAGVIVIGSLPVLGLNIARIARREWKRHRVMP
Ga0066669_107623431	3300018482	Grasslands Soil	YPRTAHIVVAGVALEFALDFGAGAVTVILARRVGDWVYAAASVVVVGSLPVLGLNIARVARREWRRHRLHG
Ga0206356_116004921	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	LNRIILTVRRTAHVVVASVLLELALDFGAGAVAVVIAPYTGRWVYAAAGVIVIGSLPVLGLNIAR
Ga0210382_100890902	3300021080	Groundwater Sediment	LKRIVFTIPHTAHVVAASIAIELALDFGAGALAVILAPYLGNWVYVVASVIVVGSLPLLGLNIARVARREWKRHGLPM
Ga0222623_103569852	3300022694	Groundwater Sediment	RRTLSVVLASIAVELALDFGAGALAIILAPYIGTWVYAVAGVVVIGSLPILGLNVARVARREWKRHHTLT
Ga0222622_100129335	3300022756	Groundwater Sediment	LQRIVFTIRRTLSVVLASIAVELALDFGAGALAIILAPYIGTWVYAVAGVVVIGSLPILGLNVARVARREWKRHHTLT
Ga0222622_100867011	3300022756	Groundwater Sediment	RTRPPKGGALKRIVFTIKRTAHVVVASVVVELALDFGAGAAAAVAAPYVGRWVYAVAGAIVVGSLPLLALNIARVARHEWKRHHLVDARAAAP
Ga0207707_1001093112	3300025912	Corn Rhizosphere	LNRIILTVRRTAHVVVASVLLELALDFGAGAVAVVIAPYTGRWVYAAAGVIVIGSLPVLGLNIARVARREWRRHHSSHESV
Ga0207707_100115407	3300025912	Corn Rhizosphere	LQQIVFTVRRTAHVVVASVLLELALDVGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSSG
Ga0207660_101311714	3300025917	Corn Rhizosphere	VRRTAHVVASVLLELALDVGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSSG
Ga0207657_1000705811	3300025919	Corn Rhizosphere	LNRIILTVRRTAHVVVASVLLELALDFGAGAVAVVIAPYTGRWVYAAAGVIVIGSLPVLGLNIARVARREWRRHHSSPRSDTVS
Ga0207649_112058531	3300025920	Corn Rhizosphere	LQQIVFTVRRTAHVVVASVLLELALDVGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSS
Ga0207674_100140898	3300026116	Corn Rhizosphere	LQQIVFTVRRTARVVVASVLLELALDVGAGAVAVLVAPYVGRWVYAVAAVIVVGSLPVLGLNVARVARREWRLHHRSSG
Ga0209878_10420562	3300027163	Groundwater Sand	LQRIVFTIRRTLHVVVASIAVELALDFGAGALAVILAPYVGTWVYAVAGVIVIGSLPVLGLNIAR
Ga0209580_100632832	3300027842	Surface Soil	LKRVLFTIRRTAHVVVASVVVELALDFGAGALAVVLAPLLGGWVYAVAGVIVVGSLPVLGLNVARVGRREWRRHRLAGAQTRANRALR
Ga0209579_1000087524	3300027869	Surface Soil	LERVIFTIRRTAHVVVASFLVELALDLGAGALAVILAPSVGNWVYAAAGVIVVGSLPVLGLNIARVARREWRRHQFANLS
Ga0209579_100483072	3300027869	Surface Soil	LHRVMFTLRRTARTVAASVVLELALDLGASAVAVALAPYVGNWIYVAAGVIVVGSMPVLSLNIARVARREWKRHQAPH
Ga0209579_101670161	3300027869	Surface Soil	LHRVIFTLRRTARTVAASVVLELALDLGASAVAVALAPYVGNWIYVAAGVIVVGSMPVLSLNIARVARREWKRHQAPH
Ga0307313_100923622	3300028715	Soil	LKRIVFTIPHTAHVVAASIAIELALDFGAGALAVILAPYLGNWVYVVASVIVVGSLPLLGLNIARVARREWKRHRLPM
Ga0307319_101115142	3300028722	Soil	LQRIVFTIRRTLSVVLARIAVELALDFGAGALAIILAPYIGTWVYAVAGVVVIGSLPILGLNVARVARREWKRHHTLT
Ga0307318_103649772	3300028744	Soil	LQRIIFTIRRTLHVVLASIAVELALDFGAGALAVVLAPYVGTWVYAVAGVIVIGSLPVLGLNIARIARREWKRH
Ga0307310_101317791	3300028824	Soil	LKRIVFTIRHTAHVVAASIAIELALDFGAGALAVILAPYLGNWVYVVASVIVVGSLPLLGLNIARVARREWKRHGLPM
Ga0307278_1000012841	3300028878	Soil	LKRIVFTIRHTAHVVAASIAIELALDFGAGALAVILAPYLGNWVYVVASVIVVGSLPLLGLNIARVARREWKRHRLPM
Ga0307278_100299382	3300028878	Soil	LKRIVFTIRHTAHVVAASIVVELALDLGAGALAVILAPFLGNWVYVVASVIVVGSLPVLGLNIARVARREWKRHRLPL
Ga0307278_101788251	3300028878	Soil	LKRIVFTIRRTAHVVVASVAVELALDFGAGALAVILAPFLGAWVYVAAGVIVVGSLPVLGLNIARVARREWKAHRRDQQTMRAFHRT
Ga0307277_100011207	3300028881	Soil	LKRIVFTIRHTLHVVAASIAVELGLDLGAGATAAVLAPFVGMWIYGLAGVIVIGSLPLLGLNIARVARREWRKHGRMA
Ga0307277_100137411	3300028881	Soil	LKRIVFTIGRTAHIVVASVVVELALDFGAGALAVILAPFLGEWVYVAAGVIVVGSLPVLSLNIARVARREW
Ga0307498_103454521	3300031170	Soil	LKRIVFTIRRTAHIVVASIAVELALDFGAGALAVILAPYVGEWVYVAAGVIVIGSLPVLGLNIARVARREWKLH
Ga0307477_109695922	3300031753	Hardwood Forest Soil	RIVFTIRRTAHIVLASVALELALDFGAGAAAVILAPRIGDWVYVAASVVVVGSLPILGLNIARVARREWRRHRLHV
Ga0307475_102365773	3300031754	Hardwood Forest Soil	VLASVALELTLDFGAGAAAVILAPRIGDWVYVAASVVVVGSLPILGLNIARVARREWRRHRLHV
Ga0307479_114173222	3300031962	Hardwood Forest Soil	FTIRRTAHIVLASVALELALDFGAGAAAVILAPRIGDWVYVAASVVVVGSLPILGLNIARVARREWRRHRLHV
Ga0307471_1017868061	3300032180	Hardwood Forest Soil	LKRIVFTIRRTARIVVASVAVELALDFGAGALAIVLAPRVGNWVYVAASVVVVGSLPVLGLNIARVARREWRRHHLHR
Ga0335085_107256041	3300032770	Soil	LKRIVFTIRRTAHIVVASVALELALDFGAGAAAVILAPRVGDWVYVAASVVVIGSLPVLGLNIGRVARREWRRHRLH
Ga0335079_1000169523	3300032783	Soil	LKRIVFTIRRTAHIVVASVALELALDFGAGAAAVILAPRVGDWVYVAASVVVIGSLPVLGLNIGRVARREWRRHRLHV
Ga0335069_107969381	3300032893	Soil	SLRRRKDAPPSKGGALQRIIFTIRRTAHIVVASVVIELMLDFGAGALAVVLAPYLGDWVYVVAGALVIGSLPALGLNIARVARREWKQHRLHI
Ga0335072_100794668	3300032898	Soil	LRRVVSTVRTTAHVVVASVVIELAVDFGAGAAAVIVAPHVGDWAYVAASVIVVASLPLLSLNIARVARREWKRHHSVADPTISE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079862

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences