NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F079910

Metagenome Family F079910

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079910
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 47 residues
Representative Sequence MKRGHVTGHKQERSGKGSNWWYQTPEAEEIIRKLEAEWEAKQQQASK
Number of Associated Samples 78
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 60.87 %
% of genes near scaffold ends (potentially truncated) 22.61 %
% of genes from short scaffolds (< 2000 bps) 89.57 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (73.913 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(42.609 % of family members)
Environment Ontology (ENVO) Unclassified
(42.609 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(46.087 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.33%    β-sheet: 0.00%    Coil/Unstructured: 70.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF13560HTH_31 18.26
PF01381HTH_3 14.78
PF13443HTH_26 4.35
PF12844HTH_19 2.61
PF00239Resolvase 1.74
PF13358DDE_3 1.74
PF04365BrnT_toxin 0.87
PF07508Recombinase 0.87
PF03400DDE_Tnp_IS1 0.87
PF13730HTH_36 0.87
PF13751DDE_Tnp_1_6 0.87
PF11455MazE-like 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 2.61
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 1.74
COG1662Transposase and inactivated derivatives, IS1 familyMobilome: prophages, transposons [X] 0.87
COG2929Ribonuclease BrnT, toxin component of the BrnT-BrnA toxin-antitoxin systemDefense mechanisms [V] 0.87


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.91 %
All OrganismsrootAll Organisms26.09 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002908|JGI25382J43887_10231215Not Available864Open in IMG/M
3300002911|JGI25390J43892_10039058All Organisms → cellular organisms → Bacteria1138Open in IMG/M
3300005166|Ga0066674_10351944Not Available691Open in IMG/M
3300005172|Ga0066683_10402426Not Available846Open in IMG/M
3300005177|Ga0066690_10471782Not Available848Open in IMG/M
3300005178|Ga0066688_10143431Not Available1491Open in IMG/M
3300005180|Ga0066685_10552594Not Available794Open in IMG/M
3300005332|Ga0066388_102307308Not Available974Open in IMG/M
3300005445|Ga0070708_100487875All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1162Open in IMG/M
3300005447|Ga0066689_10765799Not Available601Open in IMG/M
3300005447|Ga0066689_11014256Not Available511Open in IMG/M
3300005467|Ga0070706_101457464All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300005468|Ga0070707_102056689Not Available539Open in IMG/M
3300005471|Ga0070698_100213217Not Available1865Open in IMG/M
3300005558|Ga0066698_10224587All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1290Open in IMG/M
3300006755|Ga0079222_11783109Not Available594Open in IMG/M
3300007255|Ga0099791_10567771Not Available553Open in IMG/M
3300009012|Ga0066710_100033187All Organisms → cellular organisms → Bacteria6061Open in IMG/M
3300009012|Ga0066710_100057948Not Available4862Open in IMG/M
3300009012|Ga0066710_100539341Not Available1764Open in IMG/M
3300009012|Ga0066710_102791866Not Available691Open in IMG/M
3300009090|Ga0099827_10044149Not Available3314Open in IMG/M
3300009090|Ga0099827_10070863Not Available2690Open in IMG/M
3300009090|Ga0099827_10491218All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1054Open in IMG/M
3300009090|Ga0099827_10567342All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium978Open in IMG/M
3300009137|Ga0066709_100472219Not Available1760Open in IMG/M
3300009137|Ga0066709_100706389Not Available1450Open in IMG/M
3300009137|Ga0066709_101657746Not Available911Open in IMG/M
3300009799|Ga0105075_1051406Not Available534Open in IMG/M
3300009807|Ga0105061_1021679Not Available862Open in IMG/M
3300009810|Ga0105088_1039181Not Available783Open in IMG/M
3300009811|Ga0105084_1065048Not Available658Open in IMG/M
3300009814|Ga0105082_1078281Not Available596Open in IMG/M
3300009815|Ga0105070_1041349Not Available841Open in IMG/M
3300009816|Ga0105076_1101012Not Available560Open in IMG/M
3300009817|Ga0105062_1027521All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium982Open in IMG/M
3300009818|Ga0105072_1029898All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1008Open in IMG/M
3300009818|Ga0105072_1060347Not Available729Open in IMG/M
3300009821|Ga0105064_1039417Not Available896Open in IMG/M
3300009836|Ga0105068_1013618Not Available1337Open in IMG/M
3300009836|Ga0105068_1091689Not Available585Open in IMG/M
3300009836|Ga0105068_1125504Not Available516Open in IMG/M
3300009837|Ga0105058_1030300All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1168Open in IMG/M
3300010333|Ga0134080_10372444Not Available655Open in IMG/M
3300011271|Ga0137393_11771352Not Available506Open in IMG/M
3300012189|Ga0137388_11893069Not Available527Open in IMG/M
3300012199|Ga0137383_11277836Not Available524Open in IMG/M
3300012200|Ga0137382_10831590Not Available665Open in IMG/M
3300012201|Ga0137365_10475715Not Available919Open in IMG/M
3300012201|Ga0137365_10623447Not Available790Open in IMG/M
3300012201|Ga0137365_10706155Not Available737Open in IMG/M
3300012202|Ga0137363_10911896Not Available746Open in IMG/M
3300012204|Ga0137374_10125188All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2354Open in IMG/M
3300012204|Ga0137374_10156323All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium2028Open in IMG/M
3300012204|Ga0137374_10156487All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina2026Open in IMG/M
3300012204|Ga0137374_10569093Not Available868Open in IMG/M
3300012204|Ga0137374_11136661Not Available553Open in IMG/M
3300012206|Ga0137380_10651489Not Available917Open in IMG/M
3300012206|Ga0137380_11182767Not Available650Open in IMG/M
3300012206|Ga0137380_11288727All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300012206|Ga0137380_11339171Not Available601Open in IMG/M
3300012209|Ga0137379_11259072Not Available646Open in IMG/M
3300012211|Ga0137377_10889419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6822Open in IMG/M
3300012211|Ga0137377_11375878Not Available635Open in IMG/M
3300012285|Ga0137370_10896521All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6549Open in IMG/M
3300012349|Ga0137387_10286736Not Available1189Open in IMG/M
3300012349|Ga0137387_10301187All Organisms → cellular organisms → Bacteria1159Open in IMG/M
3300012350|Ga0137372_10304766All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1233Open in IMG/M
3300012351|Ga0137386_11082054Not Available567Open in IMG/M
3300012353|Ga0137367_10826885Not Available642Open in IMG/M
3300012360|Ga0137375_10114525Not Available2710Open in IMG/M
3300012360|Ga0137375_10140138Not Available2380Open in IMG/M
3300012360|Ga0137375_10285267Not Available1502Open in IMG/M
3300012361|Ga0137360_11180027Not Available662Open in IMG/M
3300012362|Ga0137361_10326161Not Available1407Open in IMG/M
3300012362|Ga0137361_10562451Not Available1046Open in IMG/M
3300012362|Ga0137361_11073089All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium726Open in IMG/M
3300012362|Ga0137361_11577706Not Available577Open in IMG/M
3300012685|Ga0137397_10512071Not Available894Open in IMG/M
3300012929|Ga0137404_10067536Not Available2794Open in IMG/M
3300012929|Ga0137404_11060984Not Available742Open in IMG/M
3300012929|Ga0137404_11215109Not Available693Open in IMG/M
3300012930|Ga0137407_10338675Not Available1383Open in IMG/M
3300012930|Ga0137407_10694507Not Available958Open in IMG/M
3300012930|Ga0137407_11448499All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium653Open in IMG/M
3300012930|Ga0137407_11612735Not Available618Open in IMG/M
3300012977|Ga0134087_10793839Not Available512Open in IMG/M
3300014150|Ga0134081_10323068Not Available560Open in IMG/M
3300014154|Ga0134075_10496742Not Available546Open in IMG/M
3300014154|Ga0134075_10530210Not Available530Open in IMG/M
3300017659|Ga0134083_10502191Not Available543Open in IMG/M
3300017997|Ga0184610_1317714Not Available511Open in IMG/M
3300018056|Ga0184623_10176151All Organisms → cellular organisms → Bacteria987Open in IMG/M
3300018431|Ga0066655_10646624Not Available715Open in IMG/M
3300018468|Ga0066662_11193771All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium769Open in IMG/M
3300020018|Ga0193721_1060816Not Available989Open in IMG/M
3300022534|Ga0224452_1088194Not Available944Open in IMG/M
3300022694|Ga0222623_10302309Not Available614Open in IMG/M
3300026277|Ga0209350_1079363All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium888Open in IMG/M
3300026332|Ga0209803_1350444Not Available512Open in IMG/M
3300026497|Ga0257164_1060372All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium620Open in IMG/M
3300027006|Ga0209896_1008265Not Available1104Open in IMG/M
3300027056|Ga0209879_1001850All Organisms → cellular organisms → Bacteria2938Open in IMG/M
3300027379|Ga0209842_1042800All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium831Open in IMG/M
3300027384|Ga0209854_1070188Not Available616Open in IMG/M
3300027490|Ga0209899_1023991Not Available1354Open in IMG/M
3300027490|Ga0209899_1049789All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium869Open in IMG/M
3300027748|Ga0209689_1087126Not Available1640Open in IMG/M
3300027846|Ga0209180_10575719All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium624Open in IMG/M
3300027882|Ga0209590_10077374All Organisms → cellular organisms → Bacteria1932Open in IMG/M
3300027952|Ga0209889_1028237Not Available1235Open in IMG/M
3300027952|Ga0209889_1071380Not Available710Open in IMG/M
3300027952|Ga0209889_1119352Not Available520Open in IMG/M
3300027957|Ga0209857_1008064All Organisms → cellular organisms → Bacteria2192Open in IMG/M
3300028878|Ga0307278_10456398Not Available560Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil42.61%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand21.74%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil10.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil8.70%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil5.22%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.48%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.74%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.87%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.87%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009799Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009810Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30EnvironmentalOpen in IMG/M
3300009811Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30EnvironmentalOpen in IMG/M
3300009814Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60EnvironmentalOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009816Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300009818Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40EnvironmentalOpen in IMG/M
3300009821Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30EnvironmentalOpen in IMG/M
3300009836Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20EnvironmentalOpen in IMG/M
3300009837Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020018Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2EnvironmentalOpen in IMG/M
3300022534Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300027006Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027056Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027379Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027384Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027490Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027952Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027957Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25382J43887_1023121513300002908Grasslands SoilMKHGHVTGHKRERSSKGSNWWYQTPEAEEIMRKLEAEWEATQQQASK*
JGI25390J43892_1003905823300002911Grasslands SoilMKRGHVTGTKRERSGKRNNWWYQTEEAQELLRKLDAEWAAKQQQASK*
Ga0066674_1035194423300005166SoilMKRGHVTGHKTERTGQGWWYQTPEAEALIRKLEAEWQARQQQGQQQ*
Ga0066683_1040242613300005172SoilMKRGHVTGHKKERSGKGNNWWYQTPEAEAMIRQLEAEWAAKQTTQASK*
Ga0066690_1047178233300005177SoilMQRGHVTSHKKERSGKGNNWWYQTPEAEAMIQKLAAEWAAKQQQASK*
Ga0066688_1014343123300005178SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEAMIRKLEAEWQARQSTHASK*
Ga0066685_1055259413300005180SoilMKRGHVTGHKKERTGKGWWYQTEEVEALIRQLEAEWQARQQPAQQQ*
Ga0066388_10230730813300005332Tropical Forest SoilRGHVTGHKHERTGTGWWYQTEEAEALIRQLEAEWQARQQQVSEQ*
Ga0070708_10048787513300005445Corn, Switchgrass And Miscanthus RhizosphereMKRGHVTGHKQERPGNGWWYQTEEAEAIVRQLEAEWQARQQPAQQQ*
Ga0066689_1076579923300005447SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEAMVRQLEAEWQAKQASK*
Ga0066689_1101425623300005447SoilGHVTGNKKERSGKGNNWWYQTPEAEAMIRQLEAEWAAKQTTQASK*
Ga0070706_10145746413300005467Corn, Switchgrass And Miscanthus RhizosphereMKRGHVTGHKTERTGQGWWYQTPEAEALIRKLEAEWQARQQQAQQQ*
Ga0070707_10205668923300005468Corn, Switchgrass And Miscanthus RhizosphereVTGHKQERTGKSWWYQTEEAEAIIRQLEAEWQVQPQQVNEQ*
Ga0070698_10021321713300005471Corn, Switchgrass And Miscanthus RhizosphereMLQHSIEKQHSMKRGHVTGHKQERTGKSWWYQTEEAEAIIRQLEAEWQVQPQQVNEQ*
Ga0066698_1022458713300005558SoilMQRGHVTGHKKERSGKGNNWWYQTPEAEAMIQKLAAEWAAKQQQASK*
Ga0079222_1178310923300006755Agricultural SoilRRTYTMKRGHVTGHKQERSGKGHNWWYQTPEAEEMICQLAVEWQARQEQGK*
Ga0099791_1056777113300007255Vadose Zone SoilMKRGHVTGHKHERSGKGNNWWYQTPEAEAIIRQLEAEREAKQQQQASK*
Ga0066710_10003318723300009012Grasslands SoilMKRGHVTGHKKERTGKGWWYQTEEVEALIRQLEAEWQARQQPAQQQ
Ga0066710_10005794823300009012Grasslands SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEAMIRKLEAEWQARQSTHASK
Ga0066710_10053934133300009012Grasslands SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEAMIRQLEAEWQAKQASK
Ga0066710_10279186613300009012Grasslands SoilMKRGHITGNKKERSGKGNNWWYQTPEAEAMIRQLEAEWAAKQTTQASK
Ga0099827_1004414943300009090Vadose Zone SoilMKRGHVTSHKHERTGKGSNWWYQTPEAEEIIRKLEAEWEAKQQQGSK*
Ga0099827_1007086313300009090Vadose Zone SoilSMKRGHVTGHKTERTGQGWWYQTPEAEALIRKLEAEWQARQQQGQQ*
Ga0099827_1049121823300009090Vadose Zone SoilMKRGHVTGHKHERTGIGRNWWYHTPEAEEIIRKLEAEWEATQQQAST*
Ga0099827_1056734213300009090Vadose Zone SoilMKRGHVTGHKQERSGKGNNWWYQTPEAEAIIRKLEAEWQAQQQQASK*
Ga0066709_10047221943300009137Grasslands SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEAMIRQLEAEWQAKQASK*
Ga0066709_10070638913300009137Grasslands SoilMQHGHVTGHKQERSGKGSNWWYQTPEAEAIIRKLEAEWEAKQQQ
Ga0066709_10165774613300009137Grasslands SoilMKRGHVTGHKKERSGKGNNWWYQTPEAEAMIRKLEAEWAARQQQQASK*
Ga0105075_105140613300009799Groundwater SandMQHGHVTGHKKERSGKGNNWWYQTPEAEAMIRQMEAEWEAKQQASK*
Ga0105061_102167923300009807Groundwater SandMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAAWEAKQQQASK*
Ga0105088_103918113300009810Groundwater SandMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAA
Ga0105084_106504823300009811Groundwater SandMKRGHVTGHKKERSSKNANWWYATEEAQELLRKLDAEWEAKPQQQ
Ga0105082_107828113300009814Groundwater SandMKHGHVTGHKKERTGKGNNWWYQTPEAEAMIRQMEAEWEAKQQQAST*
Ga0105070_104134923300009815Groundwater SandMKRGHVTGHKKERTSKGSNWWYQTPEAEAMIRQMAAEWEAKQQQQDSK*
Ga0105076_110101223300009816Groundwater SandMKRGHVTGHKKERTSKGSNWWYQTPEAEAMIRQMAAEWEAK
Ga0105062_102752113300009817Groundwater SandMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAEWAAKQQQASK*
Ga0105072_102989813300009818Groundwater SandMKRGHVTGHKKERSSKNANWWYATEEAQEVLRKLDAEWAAKQQQASK*
Ga0105072_106034713300009818Groundwater SandMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAEWEAKQQQ
Ga0105064_103941723300009821Groundwater SandMQRGHVTGHKKERSGKNANWWYATEEAQELLRKLDAEWEAKQQQASK*
Ga0105068_101361823300009836Groundwater SandMQRGHVTGHKKERSGKGNNWWYQTEEAQELLRKLDAAWEAKQQQASK*
Ga0105068_109168913300009836Groundwater SandMKRGHVTGHKQERSGKGNNWWYQTPEAEAMIRQIEAEWEAKQQASK*
Ga0105068_112550413300009836Groundwater SandMKRGHVTGHKKERTSKGSNWWYQTPEAEAMIRQMAAEWEAKQQQQDSQ*
Ga0105058_103030013300009837Groundwater SandSMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAEWAAKQQQASK*
Ga0134080_1037244423300010333Grasslands SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEPIIRQLEAEWEAKQQQQASK*
Ga0137393_1177135213300011271Vadose Zone SoilMKRGHVTGYKHERTGKGSNWWYQTPEAEEIIRKLEAELEAK*
Ga0137388_1189306923300012189Vadose Zone SoilMKRGHVTGHKHERTGKGSNWWYQTPEAEEIIRKLEAEWEAKQQQGSK*
Ga0137383_1127783613300012199Vadose Zone SoilMKRGHVTGHKQERTSKGSNWWYQTPEAEAIIRQLEAEWQARQTTQESK*
Ga0137382_1083159013300012200Vadose Zone SoilMQRGHVTGHKKERSGKGNNWWYQTPEAEAMIQKLAAEWAAKQQQAS
Ga0137365_1047571523300012201Vadose Zone SoilMKRGHITGHKQERTGKGNNWWYQTPETEEIIRKLEAEWQARQTTQESK*
Ga0137365_1062344723300012201Vadose Zone SoilMKRGHVTGHKQERSGKGSNWWYQTPEAEEIIRKLEAEWEAKQQQASK*
Ga0137365_1070615523300012201Vadose Zone SoilMQHGHVTGNKKERSGKGNNWWYQTPEAEAMIQKLEAEWEVKQQQASK
Ga0137363_1091189623300012202Vadose Zone SoilMKHGHVTGHKKERSGKNANWWYATEEAQEVLRKLDAEWAAKQQQASK*
Ga0137374_1012518833300012204Vadose Zone SoilMKRGHITGHKQERTGKGNNWWYQTPEAEEIIRKLEAEWQARQTTQESK*
Ga0137374_1015632323300012204Vadose Zone SoilMQHGHVTGHKKERSGKGNNWWYQTPEAEAMIRKLEAEWEAKRQQASK*
Ga0137374_1015648723300012204Vadose Zone SoilMKCGHVTGHKQERSGKGSNWWYQTPEAEAMIRKLEAEWEAKQQQGSK*
Ga0137374_1056909313300012204Vadose Zone SoilMDTTQKRRYAMKRGHVTGHKQERSGKGNNWWYQTPEAEAMLRQMEAEWEAKQQQEGK*
Ga0137374_1113666113300012204Vadose Zone SoilMKRGHVTGTKRERSGKGNNWWYQTEEAQELIRKLDAEWEAKQQASK*
Ga0137380_1065148923300012206Vadose Zone SoilMKRGHVTGHKKERRGKGNNWWYQTPEAEAMIRQLEAEWEAKQQQGSK*
Ga0137380_1118276713300012206Vadose Zone SoilMKRGHVTGNKKERSGKGNNWWYQTPEAEAMIRQLEAEWQAKQGSCTSS
Ga0137380_1128872713300012206Vadose Zone SoilKRGHVTGHKHERSGKGHNWWYHTPEAAEIIRQLDVEWEAKQATQASK*
Ga0137380_1133917113300012206Vadose Zone SoilMKRGHVTGHKQERTGKGNNWWYQTPEAEAMIRQMEAEWEAKQQQASK*
Ga0137379_1125907223300012209Vadose Zone SoilMKRGHATGHKKERTGKGWWYQTEEVEALIRQLEAEWQARQQPAQQQ*
Ga0137377_1088941913300012211Vadose Zone SoilMKRGHVTGHKKERTGKRSNWWYHTPEAEEIIYKLEAEWEARQQQANT*
Ga0137377_1137587823300012211Vadose Zone SoilHDEEHSMKRGHVTGHKKERTGKGWWYQTEEVEALIRQLEAEWQARQTTQESK*
Ga0137370_1089652123300012285Vadose Zone SoilDKEAPMKRGHVTGHKKERTGKRSNWWYHTPEAEEIIYKLEAEWEARQQQANT*
Ga0137387_1028673633300012349Vadose Zone SoilMQHGHVTGHKKERSGKGNNWWYQTPEAEAMIRQLEAEWEAKRQQASK*
Ga0137387_1030118713300012349Vadose Zone SoilMKRRHVTGHKHERSGKGSNWWYQTPEAEVIIRKLEAEWAAKQQASK*
Ga0137372_1030476623300012350Vadose Zone SoilMQHGHVTGHKKERSGKGNNWWYQTPEAEAKIRQLEAEWEAKRQQASK*
Ga0137386_1108205413300012351Vadose Zone SoilMKRGHVTGHKKERTGKGWWYQTEEVEALIRQLEAEWQAEQQPAQQQ*
Ga0137367_1082688513300012353Vadose Zone SoilMKRGHVTGHKKERRGKGNNWWYQTPEAEAMIRQLEAEWAAKQQQQASK*
Ga0137375_1011452543300012360Vadose Zone SoilMKRGHVTGNKQERSGKGSNWWYQTPEAEAMIRQIEAEWEAKQQQQASK*
Ga0137375_1014013873300012360Vadose Zone SoilMKRGHVTGTKRERSGKVNNWWYATEEVQELLRKLDAEWEAKQQQASK*
Ga0137375_1028526723300012360Vadose Zone SoilMKRGHVTGHKQERSGKGSNWWYQTPEAEAMIRKLEAEWEAKQQQGSK*
Ga0137360_1118002723300012361Vadose Zone SoilMKRGHVTGHKHECSGKGNNWWYQTPEAEAIILKLEVEWEAKQQQASK*
Ga0137361_1032616113300012362Vadose Zone SoilMKRGHVTGHKQERSGKGNNWWYQTPEAEAIIRKLEAEWDAKQTTQASK*
Ga0137361_1056245123300012362Vadose Zone SoilMKRGHVTGHKKERSGKNANWWYATEEAQEVLRKLDAEWEAKQQQTRK*
Ga0137361_1107308923300012362Vadose Zone SoilRRHTMQRGHVTGHKQERTGKGRNWWYHTPEAEEIIRKLEAEWEAKQQQASK*
Ga0137361_1157770623300012362Vadose Zone SoilMKRGHVTGHKQERTSKGANWWYQTPEAEAMIRQMEAEWEAKQQQAGK*
Ga0137397_1051207123300012685Vadose Zone SoilMTHTNKEHTMQRGHVTGTKRERSGKGNNWWYQTPEAEAMMRQMEAEWEAKQQASK*
Ga0137404_1006753663300012929Vadose Zone SoilMTHTKENEMQHGHVTGHKQERSGKNANWWYATEEAQEVLRKLDAEWAAKQQQASK*
Ga0137404_1106098413300012929Vadose Zone SoilMKRGHVTGHKHERSGKGNNWWYQTPEAEAIIRQLEAEWEAKQQQQASK*
Ga0137404_1121510923300012929Vadose Zone SoilMTHTKENEMKRGHVTGHKQERTSKGANWWYQTPEAEAMIRQMEAEWEAKQQQQAGK*
Ga0137407_1033867513300012930Vadose Zone SoilMHHGHVTGHKKERSGNHANWWYATEEAQEVLRKLDAEWAAKQQQASK*
Ga0137407_1069450713300012930Vadose Zone SoilMKRGHVTGTKRERSGKRNNWWYQTEEAQELLRKLDAEWEAK*
Ga0137407_1144849913300012930Vadose Zone SoilTMKRGHVTGTKRERSGKGNNWWYQTPEAEAMIRQLEAEWAAKQQQQASK*
Ga0137407_1161273513300012930Vadose Zone SoilMKRGHVTGHKKERSGKGNNWWYHTAEAEEMIQKLEAEWEAKQQQASK*
Ga0134087_1079383923300012977Grasslands SoilMKHGHVTGNKKERSGKGNNWWYQTPEAEAMIRQLEAEW
Ga0134081_1032306813300014150Grasslands SoilMKRGHVTGHKKERSGKGNNWWYQTPEAEAMIRKLEAEWQARQSTHASK*
Ga0134075_1049674223300014154Grasslands SoilMQRGHVTGHKKERSGKGNNWWYQTPEAEAMIQKLAAEWAAKQQQA
Ga0134075_1053021023300014154Grasslands SoilRSGKGNNWWYQTPEAEAMIRQLEAEWAAKQTTQASK*
Ga0134083_1050219113300017659Grasslands SoilMQRGHVTGHKTERTGQGWWYQTPEAEALIRKLEAEWQARQQQGQQQ
Ga0184610_131771413300017997Groundwater SedimentMKRGHVTGHKKERSGKGSNWWYQTPEAEAMIRQMEAEWQARQTTQDSK
Ga0184623_1017615113300018056Groundwater SedimentMKRGHVTGHKQERTSKGSNWWYQTPEAEEIIRKLEAEWQARQTTQDTK
Ga0066655_1064662423300018431Grasslands SoilMKRGHVTGHKKERSGKGNNWWYQTPEAEAMIQKLAAEWAAKQQQASK
Ga0066662_1119377113300018468Grasslands SoilMKRGHVTGTKRERSGKRNNWWYQTEEAQELLRKLDAEWAAKQQQASK
Ga0193721_106081633300020018SoilMQHGHVTGHKKERSGKGNNWWYHTPEAEEMIQKLEAEWEAKQQQASK
Ga0224452_108819423300022534Groundwater SedimentMKRGHVTGHKRERSGKGSNWWYQTPEAEEIMRKLEAEWEAKQQQGSK
Ga0222623_1030230913300022694Groundwater SedimentKEHTMKRGHVTGHKRERSGKGSNWWYQTPEAEEIMRKLEAEWEAKQQQGSK
Ga0209350_107936313300026277Grasslands SoilMQRGHVTGHKKERSGKGNNWWYQTPEAEAMIQKLAAEWAAKQQQASK
Ga0209803_135044423300026332SoilKRGHVTGHKKERTGKGWWYQTEEVEALIRQLEAEWQARQSTHASK
Ga0257164_106037223300026497SoilMKRGHVTGHKHERTGIGRNWWYHTPEAEEIIRKLETEWEATQQQAST
Ga0209896_100826533300027006Groundwater SandMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAAWEAKQQQASK
Ga0209879_100185033300027056Groundwater SandMQHGHVTGHKKERSGKGNNWWYQTPEAEAMIRQMEAEWEAKQQASK
Ga0209842_104280023300027379Groundwater SandMKRGHVTGTKRERSGKGNNWWYQTEEAQELLRKLDAEWAAKQQQASK
Ga0209854_107018823300027384Groundwater SandMKRGHVTGHKHERSGKGSNWWYQTPEAEAMIRQMEAEWEAKQQQAST
Ga0209899_102399113300027490Groundwater SandMKHGHVTGHKKERTGKGNNWWYQTPEAEAMIRQMEAEWEAKQQQAST
Ga0209899_104978923300027490Groundwater SandMQRGHVTGHKKERSGKGNNWWYQTEEAQELLRKLDAEWAAKQQQASK
Ga0209689_108712643300027748SoilMKRGHVTGTKRERSGKRNNWWYQTEEAQELLRKLDAEWAAKQQQA
Ga0209180_1057571923300027846Vadose Zone SoilMKRGHVTGHKQERTSKGANWWYQTPEAEAMIRQMEVEWEAKQQQASK
Ga0209590_1007737443300027882Vadose Zone SoilMKRGHVTSHKHERTGKGSNWWYQTPEAEEIIRKLEAEWEAKQQQGSK
Ga0209889_102823723300027952Groundwater SandMKHGHVTGHKKERSGKNANWWYATEEAQELLRKLDAEWEAKQQQASK
Ga0209889_107138013300027952Groundwater SandMKRGHVTGHKKERTSKGSNWWYQTPEAEAMIRQMAAEWEAKQQQQDSQ
Ga0209889_111935223300027952Groundwater SandMKRGHVTGHKKERSSKNANWWYATEEAQELLRKLDAEWEAKPQQQDSK
Ga0209857_100806433300027957Groundwater SandMQRGHVTGHKKERSGKGNNWWYQTPEAEAMIRQMEAEWEAKQQASK
Ga0307278_1045639813300028878SoilMKRGHVTGHKKERSGKNANWWYATEEAQELLRKLDAEWEAKQQQAST


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