NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079917

Metagenome / Metatranscriptome Family F079917

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079917
Family Type Metagenome / Metatranscriptome
Number of Sequences 115
Average Sequence Length 88 residues
Representative Sequence MAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGDYSKDGLVGTLVVVSLDDEPIVLAARSHARGPVLVRPDGDVEPGTIVA
Number of Associated Samples 83
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 25.22 %
% of genes near scaffold ends (potentially truncated) 23.48 %
% of genes from short scaffolds (< 2000 bps) 85.22 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.82

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.261 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(13.913 % of family members)
Environment Ontology (ENVO) Unclassified
(28.696 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(41.739 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 5.93%    β-sheet: 34.75%    Coil/Unstructured: 59.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.82
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Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
b.40.4.0: Nucleic acid-binding proteinsd2q2ia_2q2i0.88
b.40.4.4: Nucleic acid-binding proteinsd1fl0a11fl00.83
b.40.4.4: Nucleic acid-binding proteinsd1pxfa11pxf0.82
b.40.4.0: Nucleic acid-binding proteinsd2cwpa_2cwp0.82
b.40.4.4: Nucleic acid-binding proteinsd1jjcb31jjc0.71

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF00892EamA 33.91
PF00296Bac_luciferase 25.22
PF02738MoCoBD_1 8.70
PF04657DMT_YdcZ 3.48
PF00378ECH_1 1.74
PF01037AsnC_trans_reg 0.87
PF00196GerE 0.87
PF02608Bmp 0.87
PF14267DUF4357 0.87
PF13248zf-ribbon_3 0.87
PF13602ADH_zinc_N_2 0.87
PF10099RskA 0.87
PF07719TPR_2 0.87
PF13487HD_5 0.87
PF06243PaaB 0.87
PF13340DUF4096 0.87
PF13240zinc_ribbon_2 0.87
PF03109ABC1 0.87
PF03450CO_deh_flav_C 0.87
PF03358FMN_red 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 25.22
COG3238Uncharacterized membrane protein YdcZ, DUF606 familyFunction unknown [S] 3.48
COG0661Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB familySignal transduction mechanisms [T] 0.87
COG1744Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupNSignal transduction mechanisms [T] 0.87
COG34601,2-phenylacetyl-CoA epoxidase, PaaB subunitSecondary metabolites biosynthesis, transport and catabolism [Q] 0.87

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.26 %
UnclassifiedrootN/A1.74 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_105629181All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300002568|C688J35102_119039984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria629Open in IMG/M
3300004153|Ga0063455_100273864All Organisms → cellular organisms → Bacteria904Open in IMG/M
3300004479|Ga0062595_100080448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1646Open in IMG/M
3300005093|Ga0062594_100969196All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300005179|Ga0066684_10371840All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae958Open in IMG/M
3300005327|Ga0070658_10580455All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300005327|Ga0070658_11048962All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300005336|Ga0070680_100251642All Organisms → cellular organisms → Bacteria1494Open in IMG/M
3300005339|Ga0070660_100962364All Organisms → cellular organisms → Bacteria721Open in IMG/M
3300005339|Ga0070660_101369523All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300005344|Ga0070661_101093049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria664Open in IMG/M
3300005435|Ga0070714_100212473All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1774Open in IMG/M
3300005436|Ga0070713_100383349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1310Open in IMG/M
3300005436|Ga0070713_101234249All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria724Open in IMG/M
3300005439|Ga0070711_102010376All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300005441|Ga0070700_100769777All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300005454|Ga0066687_10749071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia581Open in IMG/M
3300005529|Ga0070741_10000857All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria101442Open in IMG/M
3300005529|Ga0070741_10002957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria43717Open in IMG/M
3300005529|Ga0070741_10531875All Organisms → cellular organisms → Bacteria1059Open in IMG/M
3300005532|Ga0070739_10000402All Organisms → cellular organisms → Bacteria84438Open in IMG/M
3300005532|Ga0070739_10008700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria10313Open in IMG/M
3300005540|Ga0066697_10797439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria513Open in IMG/M
3300005545|Ga0070695_100916627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria708Open in IMG/M
3300005554|Ga0066661_10111624All Organisms → cellular organisms → Bacteria1645Open in IMG/M
3300005607|Ga0070740_10237987All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300005614|Ga0068856_100744343All Organisms → cellular organisms → Bacteria1000Open in IMG/M
3300006046|Ga0066652_100431002All Organisms → cellular organisms → Bacteria1209Open in IMG/M
3300006046|Ga0066652_101677775All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300006755|Ga0079222_10683156All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300006794|Ga0066658_10884473All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria512Open in IMG/M
3300006800|Ga0066660_10117083All Organisms → cellular organisms → Bacteria1919Open in IMG/M
3300006800|Ga0066660_10658071All Organisms → cellular organisms → Bacteria868Open in IMG/M
3300006914|Ga0075436_100565831All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300009098|Ga0105245_11500843All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria725Open in IMG/M
3300009098|Ga0105245_11991023All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria634Open in IMG/M
3300009098|Ga0105245_12866967All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria534Open in IMG/M
3300009137|Ga0066709_102074171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria786Open in IMG/M
3300009143|Ga0099792_10539489All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia736Open in IMG/M
3300009148|Ga0105243_12007085All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria613Open in IMG/M
3300009148|Ga0105243_12934683All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria517Open in IMG/M
3300009176|Ga0105242_11113822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria804Open in IMG/M
3300009551|Ga0105238_10772658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria975Open in IMG/M
3300010152|Ga0126318_10352789All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia636Open in IMG/M
3300010329|Ga0134111_10302620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria666Open in IMG/M
3300012361|Ga0137360_11414975All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria598Open in IMG/M
3300012469|Ga0150984_117994182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria806Open in IMG/M
3300012923|Ga0137359_10250492All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1580Open in IMG/M
3300012951|Ga0164300_10960267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria546Open in IMG/M
3300012955|Ga0164298_10033614All Organisms → cellular organisms → Bacteria2329Open in IMG/M
3300012955|Ga0164298_10509071All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria806Open in IMG/M
3300012960|Ga0164301_10033165All Organisms → cellular organisms → Bacteria2486Open in IMG/M
3300012960|Ga0164301_10177821All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae1333Open in IMG/M
3300012960|Ga0164301_10343365All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1023Open in IMG/M
3300012960|Ga0164301_10435362All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria928Open in IMG/M
3300012985|Ga0164308_12071187All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria530Open in IMG/M
3300012986|Ga0164304_10629036All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria805Open in IMG/M
3300012986|Ga0164304_10918040All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria686Open in IMG/M
3300012989|Ga0164305_10056900All Organisms → cellular organisms → Bacteria2321Open in IMG/M
3300013044|Ga0154019_125650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia544Open in IMG/M
3300013100|Ga0157373_11096827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria597Open in IMG/M
3300013105|Ga0157369_10093378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3212Open in IMG/M
3300013105|Ga0157369_11806472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria621Open in IMG/M
3300013307|Ga0157372_12116172All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria646Open in IMG/M
3300013307|Ga0157372_13076645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria533Open in IMG/M
3300013765|Ga0120172_1069256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria883Open in IMG/M
3300014311|Ga0075322_1085059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria725Open in IMG/M
3300015262|Ga0182007_10033155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1751Open in IMG/M
3300015356|Ga0134073_10293449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria578Open in IMG/M
3300015371|Ga0132258_10245957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium4369Open in IMG/M
3300015373|Ga0132257_101861058Not Available774Open in IMG/M
3300015373|Ga0132257_102309774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria697Open in IMG/M
3300018468|Ga0066662_10002005All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria9528Open in IMG/M
3300020070|Ga0206356_11813818All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria700Open in IMG/M
3300020081|Ga0206354_10632529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria962Open in IMG/M
3300021363|Ga0193699_10325827All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria640Open in IMG/M
3300021377|Ga0213874_10207451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia707Open in IMG/M
3300022756|Ga0222622_10150067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1502Open in IMG/M
3300025909|Ga0207705_10474964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria970Open in IMG/M
3300025909|Ga0207705_11169171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria591Open in IMG/M
3300025916|Ga0207663_11259829All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria596Open in IMG/M
3300025921|Ga0207652_10679541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria919Open in IMG/M
3300025921|Ga0207652_10720427All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria889Open in IMG/M
3300025928|Ga0207700_11301935All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria647Open in IMG/M
3300025929|Ga0207664_10627746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria965Open in IMG/M
3300025931|Ga0207644_10940384Not Available725Open in IMG/M
3300026075|Ga0207708_11216499All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria659Open in IMG/M
3300026078|Ga0207702_10351918All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1410Open in IMG/M
3300026088|Ga0207641_12434813All Organisms → cellular organisms → Bacteria → Terrabacteria group522Open in IMG/M
3300026325|Ga0209152_10410477All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria534Open in IMG/M
3300026552|Ga0209577_10063790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3072Open in IMG/M
3300027706|Ga0209581_1000061All Organisms → cellular organisms → Bacteria393826Open in IMG/M
3300027773|Ga0209810_1000507All Organisms → cellular organisms → Bacteria84460Open in IMG/M
3300027773|Ga0209810_1048821All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2245Open in IMG/M
3300027821|Ga0209811_10336554All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria583Open in IMG/M
3300028755|Ga0307316_10133236All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria880Open in IMG/M
3300028755|Ga0307316_10240008All Organisms → cellular organisms → Bacteria → Terrabacteria group657Open in IMG/M
3300028799|Ga0307284_10087057All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1152Open in IMG/M
3300031058|Ga0308189_10560508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria500Open in IMG/M
3300031938|Ga0308175_100146036All Organisms → cellular organisms → Bacteria2261Open in IMG/M
3300031938|Ga0308175_100248210All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1785Open in IMG/M
3300031938|Ga0308175_101370420All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria789Open in IMG/M
3300031938|Ga0308175_101630133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria722Open in IMG/M
3300031939|Ga0308174_10102678All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2053Open in IMG/M
3300031939|Ga0308174_10689067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria852Open in IMG/M
3300031996|Ga0308176_10275550All Organisms → cellular organisms → Bacteria1627Open in IMG/M
3300031996|Ga0308176_12186505All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria591Open in IMG/M
3300031996|Ga0308176_12849150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria514Open in IMG/M
3300032074|Ga0308173_10476634All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1113Open in IMG/M
3300032074|Ga0308173_10830981All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria851Open in IMG/M
3300032074|Ga0308173_12060377All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria538Open in IMG/M
3300032896|Ga0335075_11048109All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria726Open in IMG/M
3300034268|Ga0372943_0012640All Organisms → cellular organisms → Bacteria4411Open in IMG/M
3300034268|Ga0372943_0469897All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria818Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil10.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil10.43%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil8.70%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.96%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere6.09%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.22%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere4.35%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.61%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.61%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.61%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.61%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.74%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.74%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.74%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.74%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.74%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.87%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.87%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.87%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.87%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.87%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.87%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.87%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.87%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005532Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1EnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005607Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2EnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300010152Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013044Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013765Permafrost microbial communities from Nunavut, Canada - A30_80cm_6MEnvironmentalOpen in IMG/M
3300014311Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1EnvironmentalOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020081Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027706Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300027773Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028799Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300034268Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10562918123300000364SoilMDDLIVGRVLSVDDHPGSRGPSFLLRVDCGGRGELEAQMEPGDYDRDELVGTLVIVGDGIVLAARSHGGVRLVRPDGDVEPGTVVA*
C688J35102_11903998413300002568SoilMDDLIVGRVLSVDDHPGARGPSFLLRVDCGGRGEVEAQMEPGEYDKDELTGTLVIVGDGIVLAARSHSGVRLVRPDGDVEPGTLVA*
Ga0063455_10027386423300004153SoilVGRVVSVDDHPGSRAPSYLLQVDLGGRGRREAQMEPGDYAKDELVGSLVILSLEDAAIVLAARSHAGPRLVRPDAAVEPGTLVA*
Ga0062595_10008044833300004479SoilVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYGKDELVGTLVVLSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA*
Ga0062594_10096919623300005093SoilMTELIVGRVLSADDHPGSRAPSYLLRVDLGGRGERDAQMEPGDYTKDELLGSLVVLSIDDESIVLAARSHGGPRLVRPDGDVDPGTVVA*
Ga0066684_1037184023300005179SoilVDDHPGARAPSYLLQVDLGRRGERNAQMEPGDYAKDELVGSLVILSIDDEAIALAARSHAGPRLIRPDGDVEPGTVVA*
Ga0070658_1058045513300005327Corn RhizosphereVGGVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPDAAVE
Ga0070658_1104896223300005327Corn RhizosphereMADLIVGRVLAASDHPGARAPSYLLRVDLGGRGEREAQMEPGEYAKDELEGTLVIVSLDDEPIVLCARSHGGPRLVRPDGDVEPGTLVA*
Ga0070680_10025164223300005336Corn RhizosphereVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPDAAVEPGTLVA*
Ga0070660_10096236413300005339Corn RhizosphereVAELIVGRVVSVDDHPGARGPSLLVRVDLGGRGERDAQMEPGGYAKDGLVGTLVIVSLDDEPIVVAARSHAHGPVLVRPDGDVEPGTVV
Ga0070660_10136952313300005339Corn RhizosphereMAELIVGRVVAASDHPGSRGPSYLVRIDLGGRGERTAQMEPGGYAKDGLEGTLVVVSIDGDEAIVLAARSHANGAVLLRPD
Ga0070661_10109304923300005344Corn RhizosphereVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYGKDELVGTLVVLSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTLV
Ga0070714_10021247323300005435Agricultural SoilMAELFVGRVLEVDDHPGARAPSYLLRVDLGGRGVVEAQMEPGDYDKDELVDALVVVGDGIVIAARSHDGPKLVRPDEDVEPGTIVA*
Ga0070713_10038334913300005436Corn, Switchgrass And Miscanthus RhizosphereMPLRYPEPPDQDEQLEVPAERDELLVGRVLEVSDLPGGRGPSYLLRLDLGPRGEREAEMDPGSYSRDELVGKLVVVSFDGGGIVVAARSHAHGPVLIQPAETVEPGTIVA*
Ga0070713_10123424913300005436Corn, Switchgrass And Miscanthus RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDELVGTLVVVSLDDEPILLAARSHARGPVLLRPDAEVEPGTIVA*
Ga0070711_10201037623300005439Corn, Switchgrass And Miscanthus RhizosphereMAELIVARVLEVNDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLLRPDADVEPGTIVA*
Ga0070700_10076977723300005441Corn, Switchgrass And Miscanthus RhizosphereVAELIVGRVVSVDDHPGARGPSLLVRVDLGGRGERDAQMEPGGYAKDGLVGTLVIVSLDDEPIVVAARSHAHGPVLVRPDGDVEPGTVVA*
Ga0066687_1074907113300005454SoilMAELIVGRVLEVDDHPGARAPSYLLRVDLGGRGVRDAQMEPGDYDKDSLVGTLVIVGDGIVLAARSHAGPRLVRPDGDVEPGTIVA*
Ga0070741_10000857843300005529Surface SoilMELIVGRVLSVGDHPGARGPSFLLEVDLGPRGTREAQMEPGGYTKDGLEGTLVVLSIEEDEAIVLAARSHAAGPRVVRPDGDVEPGTLVA*
Ga0070741_10002957163300005529Surface SoilMAELIVGRVLSVGDHPGARGPSYLLRVDLGGRGERDAQMEPGGYAKDELAGTLVVVSLDDEAIVLCARAHAGSRLVRPDADVPPGTVVA*
Ga0070741_1053187533300005529Surface SoilVELLAGRVVSVSDHPGARGPSYLVEVDLGGRGTRQAQMEPGDYAKDELEGTQVVVSIADGEAIVLAARSHSGPRVVRPDGDVEPGTPVA*
Ga0070739_10000402393300005532Surface SoilVGRVVSVSDHPGSRAPSYLVEVDLGGRGTRRAQMEPGEYAKDGLEGTLVVVSVDDDEAIVLAARSHAGPRLLRPDGEVEPGTLVA*
Ga0070739_1000870083300005532Surface SoilVTDLVVGRVVAVDDHPGARAPSYLLRLDLGPRGEREAQMDPGGHERDELLGSLVVVSLDDEAIVVTARSHARGPVLVRPEADVEPGTVVA*
Ga0066697_1079743923300005540SoilFRRVAELIVGRVVSVGDHPGSRAPSYLLQVDLGGRGLRRAQMDPGDYAKDELGGSLVILSLDDEPIVLAARSHAGPRLVRPDGAVEPGTLVA*
Ga0070695_10091662723300005545Corn, Switchgrass And Miscanthus RhizosphereVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYGKDELVGTLVVLSIDDEAIVLPAHSHAGLKLVRPDGDVEPGTVVA*
Ga0066661_1011162423300005554SoilMDDLIVGRVLSADDHPGARGPSFLLRLDCGGRGELEAQMEPGDYDKDALVGTLVIVGDGIVLAARSHGGARLVRPDGDVEPGTLVA*
Ga0070740_1023798713300005607Surface SoilHPGARGPSYLVEVDLGGRGCRQAQMEPGAYAKDELEGTLVVVSLDDDEAIVLAARSHGGPRLLRPDGDVEPGTLVA*
Ga0068856_10074434313300005614Corn RhizosphereRVLAVDDHPGSRAPSYLLRVDLGGRGERGAQMEPGGYGKDELVGTLVVLSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA*
Ga0066652_10043100223300006046SoilVELLVGRVLNVSDHPGARGPSFLVEVDLGGRGRREAQMQPGDYTKESLVGATVVVSLAEDEPILLAARSHARGPVLVRPDGDVEPGTPVA*
Ga0066652_10167777523300006046SoilMPKKRCVSFRRVAELIVGRVVSVGDHPGSRAPSYLLQVDLGGRGLRQAQMEPGDYAKDELVGTLVILSLDDEPIVLAARSHAGPRLVRPDGAVEPGTLVA*
Ga0079222_1068315613300006755Agricultural SoilEKTRKRSTATAELLVGRILAVSHRPGSRAPSYALRVNLGPRGEREAQMEPGSYTADELVGRQVVVSIDGEAIVVCARSHSHGSILVTPDREIEDGTVVA*
Ga0066658_1088447313300006794SoilLIVGRVVSVDDHPGSRAPSYLLRVDVGGRGQRDAQMEPGDYDKDELVGSLVVVSIDDEAIVLAARSHSGPRLVRPDADVEPGTLVA*
Ga0066660_1011708323300006800SoilVDDHPGARAPSYLLRVDLGGRGERNAQMEPGDYAKDELVGSLVILSIDDEAIALAARSHAGPRLIRPDGDVEPGTVVA*
Ga0066660_1065807123300006800SoilMTELIVGRVLSVGHAPGARGPSYLVRLDLGGRGERDAQMEPGDYAADDLVGRLVVVSLDDEAIVLAARSHGGPRLVVPDGDVEPGTLVA*
Ga0075436_10056583133300006914Populus RhizosphereGSRAPSYLLQVDLGGRGRREAQMEPGDYAKDELVGSLVIVSLEDEPIVLAARSHAGPRLVRPDADVEPGTLVA*
Ga0105245_1150084323300009098Miscanthus RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHSRGPVLLRPDAEVEPGTIVA*
Ga0105245_1199102323300009098Miscanthus RhizosphereRVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYAKDGLVGALVVVSLDDEPILLAARSHAHGPVLLRPDAEVEPGTIVA*
Ga0105245_1286696713300009098Miscanthus RhizosphereMLMDLIVGRILEASDHPGARAPSYLLRLDLGPRGVVEAQMEPGGHSKDALLGTLVVASLGDEAIVVCARSHAHGPVLLRPEEDVEPGTVVA*
Ga0066709_10207417113300009137Grasslands SoilVSCRWATIRGSRAPSYLLQVDLGGRGLRRAQMEPGDYAKDELVGSLVILSLDDEPIVLAARSHAGPRLVRPDGAVEPGTLVA*
Ga0099792_1053948913300009143Vadose Zone SoilVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYEKDELVGSLLVLSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA*
Ga0105243_1200708523300009148Miscanthus RhizosphereVAELIVGRVVLVDDHPGARGPSLLVRVDLGGRGERDAQMEPGGYAKDGLVGTLVIVSLDDEPIVVAARSHAHGPVLVRPDGDVEPGTVVA*
Ga0105243_1293468323300009148Miscanthus RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGDYSKDGLVGTLVVVSLDDEPIVLAARSHARGPVLVRPDGDVEPGTIVA*
Ga0105242_1111382223300009176Miscanthus RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDELVGTLVVVSLDDEPILLAARSRSRGPVLLRPDAEVEPGTIVA*
Ga0105238_1077265823300009551Corn RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGDYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLLRPDAEVEPGTIVA*
Ga0126318_1035278913300010152SoilRVIEVSDHPGARGPSFLVRVDLGGSGEREAQMEPGDYAKDALAGTLVVVSIDGDEAIVLAARSHDGPRLVRPDGDVAPGTPVA*
Ga0134111_1030262023300010329Grasslands SoilVDLVVGRVVNVSDHPGARGPSFLVEVDLGGRGHREAQMEPGSYTKDSLVGATIVVSIADDEPIVLAARSHGAGPVLVRPDGDVEPGTPVA*
Ga0137360_1141497513300012361Vadose Zone SoilVTELIVGRVLAVEDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKHELVGTLLVLSIDDEAIVLAAHSHAGLRLVRPDGDVEP
Ga0150984_11799418223300012469Avena Fatua RhizosphereVDLIVGRVLEVSDHAGSRAPSYLVQLDLGPRGVVFAQMEPGGYSSADLLGTQVVVSIEGEAIVLCARSHAGGPVLLRPEREVEPGTVVA*
Ga0137359_1025049223300012923Vadose Zone SoilVTELIVGRVLAVEDHPGSRAPSYLLRVDLGGRGERQAQMEPGDYAKHELVGTLLVLSIDDEAIVLAAHSHAGLRLVRPDGDVEPGTVVA*
Ga0164300_1096026723300012951SoilMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLLRPDADVEPG
Ga0164298_1003361433300012955SoilVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKDDLLGTLVILSIDDEAIVLAADSHAVLKLVRPDGDVGPGTVVA*
Ga0164298_1050907113300012955SoilMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDELVGTLVVVSLDDEPILLAARSHSRGPVLLRPDAEVEPGTIVA*
Ga0164301_1003316533300012960SoilVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKDDLLGTLVILSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA*
Ga0164301_1017782113300012960SoilMTELIVGRVMSADDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKDELVGLLVVLSIDDETIVLAARTHGGPRLVRPDGDVEPGTIVA*
Ga0164301_1034336513300012960SoilMTELIVGRVLSADDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKDELVGSLGGLSIDDEPSVLAARSHGGPRLVRPDGDVEPGTIVA*
Ga0164301_1043536223300012960SoilMAELIVARVLEVNDHPGSLAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLLRPDADVEPGTIVA*
Ga0164308_1207118723300012985SoilMAELIVARVLEVSDHPGLRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHARGPVLLRPDAEVEPGTVVA*
Ga0164304_1062903623300012986SoilMAELIVARVLEVSDHLGARAPSYLLRIDLGGRGEREAQMEPGGYSKDELVGTLVVVSLDDEPILLAARSHARGPVLLRPDAEVE
Ga0164304_1091804013300012986SoilRGSLASGAMTELIVGRVLSADDHPGSRAPSYLLRVDLGGRGEREAQMEPGGHKKDELVGSLVVVSLDDEPILLAARSHSRGPVLLRPDAEVEPGTIVA*
Ga0164305_1005690023300012989SoilVTELLVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKDDLLGTLVILSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA*
Ga0154019_12565013300013044Corn, Switchgrass And Miscanthus RhizosphereRGPSFLVRVDLGGRGVREAQMEPGDYAKDALEGTLVVVSLDGDEAIVLAARSHAGPRLVRPDGHVEPGTVVA*
Ga0157373_1109682723300013100Corn RhizosphereMDLIVGRVIEASDHPGARAPSYLLRLDVGARGVIDAQMEPGSHSKDALRGTFVVVSVDDEAIVVCARSHGRGPVLVRPDEDVEPGTIVA*
Ga0157369_1009337843300013105Corn RhizosphereMGDLIVGRVLSVDDHPGARAPSFLLRVDLGGRGKRDAQMEPGDYAKDELVGRLVVVSLEDEAIVVAARSHDGPRLVVPDGDVTPGTVVA*
Ga0157369_1180647223300013105Corn RhizosphereVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYGKDELVGTLVVLSIDDEAIVLAAHSHAGLKLVRPDGEVEPGTVVA*
Ga0157372_1211617213300013307Corn RhizosphereVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRAGADVERGTLVA*
Ga0157372_1307664513300013307Corn RhizosphereVAELIVGRVVSVDDHPGARGPSLLVRVDLGGRGERDAQMEPGGYAKDGLVGTLAIVSLDDEPIVVAARSHAHGPVLVRPDGDVEPGTVVA*
Ga0120172_106925623300013765PermafrostVDLIVGRVLEVSDHPGARAPSYLLRLDLGSRGVTEAQMEPGGHAKDDLLGTLLVVSLGDGAIVLCALSHAHGPVLLRPENEVEPGTIVA*
Ga0075322_108505913300014311Natural And Restored WetlandsMDLIVGQVVAVSDHPGARAPSYLLRLDLGPRGVIEAQMEPNGHSKESLEGTLVVASLGDEAIVVCARSHAHGSVLLRPEQEVEPGTIVA*
Ga0182007_1003315523300015262RhizosphereMADLIVARVLSVGDHPGARGPSFLVRVDLGGGGERDVQMEPGEYTKDELEGTLVVVSDDLVLQARSHAGPRLVRPDGDVEPGTPVA*
Ga0134073_1029344913300015356Grasslands SoilVAELIVGRVVSVGDHPGSRAPSYLLQVDLGGRGLRQAQMEPGDYAKDELVGTLVILSLDDEPIVLAARSHAGPRLVRPDGAVEPGTLVA*
Ga0132258_1024595733300015371Arabidopsis RhizosphereMDLIVGRVLDVSNHVGARAPSSLLRVDLGPRGVTEAQMEPGAHSKESLLGTLVVVSLGDEAILVCARSHAHGSVLLRPEREVEPGTVVA*
Ga0132257_10186105823300015373Arabidopsis RhizosphereMDLIVGRVLDVSNHVGARAPSSLLRVDLGPRGVSEAQMEPGAHSKESLLGTLVVVSLGDEAILVCPRSHAHGSVLLRPEREVEPGTVVA*
Ga0132257_10230977423300015373Arabidopsis RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPIVLAARSHSHGPVLLRPDGDVGPGTIVA*
Ga0066662_1000200583300018468Grasslands SoilMDDLIVGRVLSADDHPGARGPSFLLRLDCGGRGELEAQMEPGDYDKDALVGTLVIVGDGIVLAARSHGGARLVRPDGDVEPGTLVA
Ga0206356_1181381813300020070Corn, Switchgrass And Miscanthus RhizosphereVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPDAAVEPGTLVA
Ga0206354_1063252923300020081Corn, Switchgrass And Miscanthus RhizosphereVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPGADVEPGTVVA
Ga0193699_1032582723300021363SoilMAELIVARVLEVNDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYSKDELAGTLVVVSLDDEPILLAARSHAHGPVLLRPDGDVEPGTIVA
Ga0213874_1020745113300021377Plant RootsSRGPSYLVEVDLGGRGTRQAQMEPGSYAKDELEGTLVVVSIDDDAAIVLAARSHGGPRLLRPDGDVEPGTLVA
Ga0222622_1015006723300022756Groundwater SedimentMAELIVARVLEVNDHPGSRAPSYLLRIDLGGRGERDAQMEPGGYSKDELAGTLVVVSLDDEPILLAARSHAHGPVLLRPDGDVEPGTIVA
Ga0207705_1047496413300025909Corn RhizosphereVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYGKDELVGTLVVLSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA
Ga0207705_1116917113300025909Corn RhizosphereMADLIVGRVLAASDHPGARAPSYLLRVDLGGRGEREAQMEPGEYAKDELEGTLVIVSLDDEPIVLCARSHGGPRLVRPDGDVEPGTLVA
Ga0207663_1125982923300025916Corn, Switchgrass And Miscanthus RhizosphereMELLVGRVVSVSDHPGARGTSYLVTIDLGGRGTREAQMQPGDYAKDALPGTLLVVSIDGDEAIVLAARSHGGPRLLRPDGDVAPGTLVA
Ga0207652_1067954123300025921Corn RhizosphereMDLIVGRVIEASDHPGARAPSYLLRLDVGARGVIDAQMEPGSHSKDALLGTFVVVSVDDEAIVVCARSHGRGPVLVRPDEDVEPGTIVA
Ga0207652_1072042723300025921Corn RhizosphereVGGVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPDAAVEPGTLVA
Ga0207700_1130193523300025928Corn, Switchgrass And Miscanthus RhizosphereMDDLIVGRVLGVDDHPGARGPSYLLRVDCGGRGELEAQMEPGDYDKDELVGTLVIVGDGIVLAARSHGGVRLVRPDGDVEPGTLVA
Ga0207664_1062774633300025929Agricultural SoilMAELFVGRVLEVDDHPGARAPSYLLRVDLGGRGVVEAQMEPGDYDKDELVDALVVVGDGIVIAARSHDGPKLVRPDEDVEPGTIVA
Ga0207644_1094038433300025931Switchgrass RhizosphereMAELIVARVLEVNDHPGSRAASYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLL
Ga0207708_1121649913300026075Corn, Switchgrass And Miscanthus RhizosphereVAELIVGRVVSVDDHPGARGPSLLVRVDLGGRGERDAQMEPGGYAKDGLVGTLVIVSLDDEPIVVAARSHAHGPVLVRPDGDVEPGTVVA
Ga0207702_1035191823300026078Corn RhizosphereMAELIVARVLEVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHARGPVLLRPDAEVEPGTIVA
Ga0207641_1243481323300026088Switchgrass RhizosphereGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLLRPDADVEPGTIVA
Ga0209152_1041047723300026325SoilMPKKRCVSVLEMPDLIVGRVVSVDDHPGSRAPSYLLRVDVGGRGQRDAQMEPGDYDKDELVGSLVVVSIDDEAIVLAARSHSGPRLVRPDADVEPGTLVA
Ga0209577_1006379023300026552SoilMTELIVGRVLSVGHAPGARGPSYLVRLDLGGRGERDAQMEPGDYAADDLVGRLVVVSLDDEAIVLAARSHGGPRLVVPDGDVEPGTVVA
Ga0209581_10000611083300027706Surface SoilVTDLVVGRVVAVDDHPGARAPSYLLRLDLGPRGEREAQMDPGGHERDELLGSLVVVSLDDEAIVVTARSHARGPVLVRPEADVEPGTVVA
Ga0209810_1000507393300027773Surface SoilVGRVVSVSDHPGSRAPSYLVEVDLGGRGTRRAQMEPGEYAKDGLEGTLVVVSVDDDEAIVLAARSHAGPRLLRPDGEVEPGTLVA
Ga0209810_104882143300027773Surface SoilVTDLVVGRVVAVDDHPGARAPSYLLRLDLGPRGEREAQMDPGGHERDELIGSLVVVSLDDEAIVVTARSHARGPVLVRPEADVEPGTVVA
Ga0209811_1033655423300027821Surface SoilMAELIVARVLEVNDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHAHGPVLLRPDADVEPGTIVA
Ga0307316_1013323623300028755SoilMAELIVARVLEVNDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDELVGTLVVASLDDEPIVLAARSHARGPVLLRP
Ga0307316_1024000823300028755SoilAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGGYGKDELVGTLVVLSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA
Ga0307284_1008705723300028799SoilVTELIVGRVLAVDDHPGSRAPSYLLRVDLGGRGEREAQMEPGDYAKDDLVGTLVILSIDDEAIVLAAHSHAGLKLVRPDGDVEPGTVVA
Ga0308189_1056050813300031058SoilIIEANDHPGARAPSYLLRVDAGHRGVIEAQMEPGGHSKDALPGTLVVLSIDDEAIVVCARSHRRGPVLLRPEEDVEPGTIVA
Ga0308175_10014603613300031938SoilVAELIVGRVVAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPDADVE
Ga0308175_10024821023300031938SoilMAELIVGRVLDVSDHPGSRAPSYLLRIDLGGRGEREAQMEPGGYSKDGLVGTLVVVSLDDEPILLAARSHARGPVLLRPDGEVEPGTIVA
Ga0308175_10137042023300031938SoilMTDLIVGRVLSVNDHPGARAPSYLLRVDLGGRGEREAQMEPGEYAKDELEGTLVILSLDDEPIVLCARSHAGPRLVRPDGDVEPGTLVA
Ga0308175_10163013323300031938SoilVGRVLAVNDHPGSRGPSYLVRVDLGGRGEREAQMEPGEYAKDELAGTLVVVSLDDQPIVLCARSHAGPRLVRPDAEVEPGTIVA
Ga0308174_1010267823300031939SoilMELIAGRVLEVSDHPGARGPSFLVRVDLGGRGVRDAQMEPGDYAKDALEGTVVVVSLEGDEAIVLAARSHAGPRLVRPDEDVEPGTLVA
Ga0308174_1068906723300031939SoilFVSVLGMGELVVGRVTGVTDHPGARGPSFLVRVDLGGRGEREAQMEPGDYAKDELEGTLVIVSIDDEPIVLCARSHGGSRLVRPDREVEPGTVVA
Ga0308176_1027555013300031996SoilMADLIVGRVLSVDDHPGARAPSYLLRVDLGGRGEREAQMEPGDYAKDELEGMLVIVSLDDAPIVLCARSHAGPRLVRPDGDVEPGTLVA
Ga0308176_1218650523300031996SoilMADLIVGRVLSASDHPGSRAPSYLLRVDLGGRGQRDAQMEPGEYAKDELEGTLVIVSLDDEPIVLCARSHAGPRLVRPDGDVEPGTLVA
Ga0308176_1284915023300031996SoilVELLVGRVISFADHPGARGPSFLLEVDLGGRGVRTAQMEPGGYARDELEGTLIVVTLDGDEAIALAARSHDGPRLVRPDGAVEPGTVVA
Ga0308173_1047663423300032074SoilAASDHPGSRGPSYLLRVDLGGRGERTAQMEPGGYTKDGLEGTLVVVSVDGDEAIVLAARSHAHGTVLLRPDAAVEPGTLVA
Ga0308173_1083098123300032074SoilMELIAGRVLEVSDHPGARGPSFLVRVDLGGRGVRDAQMEPGDYAKDALEGTLVVVSLDGDEAIVLAARSHAGPRLVRPDGDVEPGTLVA
Ga0308173_1206037723300032074SoilMADLIVGRVLSVDDHPGARAPSYLLRVDLGGRGEREAQMEPGDYAKDELEGTLVIVSIDDEPIVLCARSHGGSRLVRPDREVEPGTVVA
Ga0335075_1104810923300032896SoilMELIVGRVLSVGDHPGARGPSFLLEVDLGPRGTRTAQMEPGSYTKDELEGTLLVVSIDGDEAIALAARSHSAGPKLLRPDGDIEPGTLVA
Ga0372943_0012640_358_6273300034268SoilVELLAGRVVSVADHPGARGPSYLVEVDLGGRGVRGAQMDPGEYAKDELEGTLVVVSIEDGEAIVLQARSHAGPRLVRPDGDVEPGTLVA
Ga0372943_0469897_46_3153300034268SoilVTELIVGRVLAVDDHPGARAPSYLLRVDLGGRGEREAQMEPGDYTRDELVGTLVILSIDDEAIVLAAHTHAGLKLVRPDGDVEPGTPVA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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