Metagenome / Metatranscriptome Family F080346

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F080346
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	59 residues
Representative Sequence	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPSPAKP
Number of Associated Samples	67
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.77 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	64.35 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (61.739 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.174 % of family members)
Environment Ontology (ENVO)	Unclassified (58.261 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (90.435 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.14% β-sheet: 0.00% Coil/Unstructured: 48.86%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00072	Response_reg	13.91
PF01904	DUF72	9.57
PF00106	adh_short	3.48
PF13519	VWA_2	1.74
PF13545	HTH_Crp_2	1.74
PF00589	Phage_integrase	1.74
PF09650	PHA_gran_rgn	1.74
PF00437	T2SSE	1.74
PF00069	Pkinase	1.74
PF12844	HTH_19	1.74
PF00857	Isochorismatase	1.74
PF04471	Mrr_cat	0.87
PF13432	TPR_16	0.87
PF06742	DUF1214	0.87
PF01041	DegT_DnrJ_EryC1	0.87
PF12796	Ank_2	0.87
PF00563	EAL	0.87
PF00144	Beta-lactamase	0.87
PF08867	FRG	0.87
PF00580	UvrD-helicase	0.87
PF07589	PEP-CTERM	0.87
PF13560	HTH_31	0.87
PF02735	Ku	0.87
PF00881	Nitroreductase	0.87
PF06863	DUF1254	0.87
PF13245	AAA_19	0.87
PF01545	Cation_efflux	0.87
PF12867	DinB_2	0.87
PF00515	TPR_1	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	9.57
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	6.96
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.74
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.74
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.74
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.87
COG0210	Superfamily I DNA or RNA helicase	Replication, recombination and repair [L]	0.87
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.87
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.87
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.87
COG1074	3Ã¢â‚¬â„¢-5Ã¢â‚¬â„¢ helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.87
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.87
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.87
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.87
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.87
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.87
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.87
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.87
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.87
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.87
COG3973	DNA helicase IV	Replication, recombination and repair [L]	0.87
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.87
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.87
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.74 %
Unclassified	root	N/A	38.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.13 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.39 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.87 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.87 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.87 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.39 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.87 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.39 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.87 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.39 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.87 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.87 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	0.87 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001151\|JGI12713J13577_1019370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28	579	Open in IMG/M
3300001546\|JGI12659J15293_10004758	All Organisms → cellular organisms → Bacteria → Acidobacteria	4004	Open in IMG/M
3300001546\|JGI12659J15293_10007754	All Organisms → cellular organisms → Bacteria → Acidobacteria	3083	Open in IMG/M
3300001546\|JGI12659J15293_10036825	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300001546\|JGI12659J15293_10036892	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300003370\|JGI26337J50220_1002806	All Organisms → cellular organisms → Bacteria → Acidobacteria	2009	Open in IMG/M
3300003505\|JGIcombinedJ51221_10132232	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300004080\|Ga0062385_10026836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2256	Open in IMG/M
3300004082\|Ga0062384_100101847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1538	Open in IMG/M
3300004082\|Ga0062384_100353604	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M
3300004082\|Ga0062384_100555671	Not Available	770	Open in IMG/M
3300004082\|Ga0062384_100725502	Not Available	687	Open in IMG/M
3300004082\|Ga0062384_100726112	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300004091\|Ga0062387_100259365	All Organisms → cellular organisms → Bacteria → Acidobacteria	1093	Open in IMG/M
3300004091\|Ga0062387_101334871	Not Available	568	Open in IMG/M
3300004092\|Ga0062389_101607525	Not Available	832	Open in IMG/M
3300004092\|Ga0062389_104172750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	543	Open in IMG/M
3300004152\|Ga0062386_101627615	Not Available	538	Open in IMG/M
3300004631\|Ga0058899_12202927	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300004635\|Ga0062388_100139065	Not Available	1821	Open in IMG/M
3300005591\|Ga0070761_10006654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6660	Open in IMG/M
3300005591\|Ga0070761_10123045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1507	Open in IMG/M
3300005602\|Ga0070762_10042032	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300005602\|Ga0070762_10055848	Not Available	2188	Open in IMG/M
3300005602\|Ga0070762_10103990	Not Available	1648	Open in IMG/M
3300005602\|Ga0070762_10181111	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300005602\|Ga0070762_10199169	Not Available	1224	Open in IMG/M
3300005602\|Ga0070762_10804389	Not Available	636	Open in IMG/M
3300005610\|Ga0070763_10249995	Not Available	961	Open in IMG/M
3300005712\|Ga0070764_10034668	Not Available	2553	Open in IMG/M
3300005712\|Ga0070764_10275269	Not Available	965	Open in IMG/M
3300005921\|Ga0070766_10014159	All Organisms → cellular organisms → Bacteria	4147	Open in IMG/M
3300005921\|Ga0070766_10100449	Not Available	1712	Open in IMG/M
3300005921\|Ga0070766_10258348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1107	Open in IMG/M
3300006174\|Ga0075014_100536070	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300006176\|Ga0070765_100001000	All Organisms → cellular organisms → Bacteria	16854	Open in IMG/M
3300006176\|Ga0070765_100003061	All Organisms → cellular organisms → Bacteria	10695	Open in IMG/M
3300006176\|Ga0070765_101279892	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300009624\|Ga0116105_1154869	Not Available	609	Open in IMG/M
3300009628\|Ga0116125_1005119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3918	Open in IMG/M
3300011120\|Ga0150983_11517249	Not Available	888	Open in IMG/M
3300011120\|Ga0150983_15959813	All Organisms → cellular organisms → Bacteria → Proteobacteria	2803	Open in IMG/M
3300014489\|Ga0182018_10595839	Not Available	580	Open in IMG/M
3300014501\|Ga0182024_10006075	All Organisms → cellular organisms → Bacteria → Acidobacteria	26680	Open in IMG/M
3300017946\|Ga0187879_10160955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300017988\|Ga0181520_10634940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300018034\|Ga0187863_10356506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	814	Open in IMG/M
3300018043\|Ga0187887_10818576	Not Available	551	Open in IMG/M
3300018044\|Ga0187890_10694606	Not Available	574	Open in IMG/M
3300020579\|Ga0210407_10135860	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1889	Open in IMG/M
3300020579\|Ga0210407_10967276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	650	Open in IMG/M
3300020580\|Ga0210403_10006629	All Organisms → cellular organisms → Bacteria	9682	Open in IMG/M
3300020580\|Ga0210403_10123541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	2108	Open in IMG/M
3300020580\|Ga0210403_10229987	Not Available	1521	Open in IMG/M
3300020580\|Ga0210403_11082638	Not Available	623	Open in IMG/M
3300020581\|Ga0210399_10635829	Not Available	881	Open in IMG/M
3300020581\|Ga0210399_10846905	Not Available	744	Open in IMG/M
3300020582\|Ga0210395_10020518	All Organisms → cellular organisms → Bacteria	4863	Open in IMG/M
3300020582\|Ga0210395_10130532	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300020583\|Ga0210401_10043231	All Organisms → cellular organisms → Bacteria	4264	Open in IMG/M
3300020583\|Ga0210401_11433320	Not Available	548	Open in IMG/M
3300021171\|Ga0210405_10008579	All Organisms → cellular organisms → Bacteria	8829	Open in IMG/M
3300021171\|Ga0210405_10173177	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300021180\|Ga0210396_10559973	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	996	Open in IMG/M
3300021181\|Ga0210388_10132795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2152	Open in IMG/M
3300021181\|Ga0210388_10495458	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300021401\|Ga0210393_10402362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1116	Open in IMG/M
3300021403\|Ga0210397_10290105	Not Available	1199	Open in IMG/M
3300021405\|Ga0210387_10000650	All Organisms → cellular organisms → Bacteria	25129	Open in IMG/M
3300021407\|Ga0210383_11362271	Not Available	591	Open in IMG/M
3300021420\|Ga0210394_11198986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300021432\|Ga0210384_10715573	Not Available	896	Open in IMG/M
3300021433\|Ga0210391_10034194	All Organisms → cellular organisms → Bacteria	4074	Open in IMG/M
3300021433\|Ga0210391_10044633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3536	Open in IMG/M
3300021433\|Ga0210391_10063991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2916	Open in IMG/M
3300021433\|Ga0210391_10184021	Not Available	1644	Open in IMG/M
3300021474\|Ga0210390_10000139	All Organisms → cellular organisms → Bacteria	75338	Open in IMG/M
3300021477\|Ga0210398_10056956	All Organisms → cellular organisms → Bacteria	3199	Open in IMG/M
3300021477\|Ga0210398_10071779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2816	Open in IMG/M
3300021479\|Ga0210410_11338742	Not Available	609	Open in IMG/M
3300021559\|Ga0210409_11091590	Not Available	673	Open in IMG/M
3300021559\|Ga0210409_11111355	Not Available	665	Open in IMG/M
3300022722\|Ga0242657_1129618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300022733\|Ga0224562_1020514	Not Available	543	Open in IMG/M
3300024225\|Ga0224572_1024178	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300024227\|Ga0228598_1050374	Not Available	825	Open in IMG/M
3300024227\|Ga0228598_1106737	Not Available	566	Open in IMG/M
3300024271\|Ga0224564_1012682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1450	Open in IMG/M
3300026467\|Ga0257154_1001151	All Organisms → cellular organisms → Bacteria → Acidobacteria	3005	Open in IMG/M
3300026467\|Ga0257154_1003166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2037	Open in IMG/M
3300027370\|Ga0209010_1000473	All Organisms → cellular organisms → Bacteria → Acidobacteria	12820	Open in IMG/M
3300027545\|Ga0209008_1000369	All Organisms → cellular organisms → Bacteria	16215	Open in IMG/M
3300027575\|Ga0209525_1002816	All Organisms → cellular organisms → Bacteria	3907	Open in IMG/M
3300027853\|Ga0209274_10005059	All Organisms → cellular organisms → Bacteria	6077	Open in IMG/M
3300027853\|Ga0209274_10244860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300027879\|Ga0209169_10028698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2965	Open in IMG/M
3300027884\|Ga0209275_10020817	All Organisms → cellular organisms → Bacteria → Acidobacteria	2932	Open in IMG/M
3300027884\|Ga0209275_10139166	Not Available	1278	Open in IMG/M
3300027889\|Ga0209380_10011981	All Organisms → cellular organisms → Bacteria	5007	Open in IMG/M
3300027889\|Ga0209380_10154243	Not Available	1343	Open in IMG/M
3300027889\|Ga0209380_10801576	Not Available	534	Open in IMG/M
3300027895\|Ga0209624_10841469	Not Available	601	Open in IMG/M
3300028906\|Ga0308309_10001630	All Organisms → cellular organisms → Bacteria	13296	Open in IMG/M
3300028906\|Ga0308309_10787694	Not Available	826	Open in IMG/M
3300028906\|Ga0308309_10850232	Not Available	792	Open in IMG/M
3300031708\|Ga0310686_105558968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23176	Open in IMG/M
3300031708\|Ga0310686_107191112	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1622	Open in IMG/M
3300031708\|Ga0310686_107603025	All Organisms → cellular organisms → Bacteria → Acidobacteria	15955	Open in IMG/M
3300031708\|Ga0310686_110471145	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300031753\|Ga0307477_10177314	Not Available	1485	Open in IMG/M
3300031823\|Ga0307478_10987336	Not Available	704	Open in IMG/M
3300032515\|Ga0348332_11987256	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300032515\|Ga0348332_12210752	Not Available	1439	Open in IMG/M
3300034163\|Ga0370515_0307770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.39%
Host-Associated	Host-Associated	2.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.13%
Aquatic	Environmental → Aquatic	18.26%
Plants	Host-Associated → Plants	2.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.39%
Freshwater	Environmental → Aquatic → Freshwater	17.39%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.61%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.74%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.13%
Loam	Environmental → Terrestrial → Soil → Loam	35.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.61%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	35.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.74%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.74%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.17%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	24.35%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	11.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.22%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.74%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.87%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.87%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12713J13577_10193701	3300001151	Forest Soil	MIYLASAMFLCRKLASLDGRPSPARDLAFRDAIDTATELMRRI
JGI12659J15293_100047583	3300001546	Forest Soil	MDEGRKKLIYRVAGMFLVRRSAGLDRRPARENAFRDAIDNVVERMRRVDARFPAPGK*
JGI12659J15293_100077543	3300001546	Forest Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENASQDSIDNAVELMKRIDARFPTSGNTTMNL*
JGI12659J15293_100368252	3300001546	Forest Soil	MVEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFTDSIDNAIELMRRLDARFPNPAKPR*
JGI12659J15293_100368922	3300001546	Forest Soil	MDEGRKKLIYLVAGMFLVRQLAGLDRRPSPARENAFTDSIDNAVELMRRIDARFPNPARPR*
JGI26337J50220_10028062	3300003370	Bog Forest Soil	VDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRIDARFPTPGKPR*
JGIcombinedJ51221_101322323	3300003505	Forest Soil	MSDEARKKLIYLVAGMLLCRKLDVLEGRLSPAREMAFRDAIEMASEPMRRVEARFPTANKYVI*
Ga0062385_100268365	3300004080	Bog Forest Soil	MDERRKKLIYLVAGMFLVRRLVGLDRRPSPAGENAFRDAIDNAVELMRRPDARI
Ga0062384_1001018472	3300004082	Bog Forest Soil	MDEGRKKLIYLVAGMFLVRRMAGLDRRPSPARENAFRDAIDNAVELMRRIDARFPPATKSSHPLDGRP*
Ga0062384_1003536042	3300004082	Bog Forest Soil	MDEGRKELIYLVAGMFLVRRLAGLDRLPSPARENAFRDAIDNAGEFWRRIDARFLAVGK*
Ga0062384_1005556711	3300004082	Bog Forest Soil	KRRCYLVLVDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRIDARFPTPGKPR*
Ga0062384_1007255021	3300004082	Bog Forest Soil	VTDAARKKLIYLASAMFLCRKLASLDGRPSPARDVAFRDAIDTATELMRRVE
Ga0062384_1007261121	3300004082	Bog Forest Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRQPSPARENAFRDAIDNAVELMRRLDARFPTPSKPR*
Ga0062387_1002593653	3300004091	Bog Forest Soil	VSDEARKKLIYLASAMFLCRKLASLDGRPSPARESVFREVIDTATELMRRVEA
Ga0062387_1013348712	3300004091	Bog Forest Soil	MDDGRKKLIYLVAGMFLVRRLAGLEHRPSPARESAFRDATDNAVELWRRIDARFPTGSGPR*
Ga0062389_1016075251	3300004092	Bog Forest Soil	MDDGRKKLIYLVAGMFLVRRLAGLEHRPSPARESAFRDAIDNAVELWRRIDARFPTGSGPR*
Ga0062389_1041727502	3300004092	Bog Forest Soil	MDEPRKKIIFLAAAMFLCRRLAALDRRPSPAREAAYRDSIDDAVELMRRIDARFPTVGKT
Ga0062386_1016276151	3300004152	Bog Forest Soil	MDEGRKKLIYIVAGMFLVRRLAGLDRRPSPARENAFNDSIDNAVELMRRLDARFPNSR*
Ga0058899_122029272	3300004631	Forest Soil	MSDEARKKLIYLVAGMLLCRKVAALEGRPSPAREMAFRDAIETATELMRRVEARFP
Ga0062388_1001390653	3300004635	Bog Forest Soil	MDDGLKKLIYLVAGMFLVRRLAGLDRRPSPARENAFCDAIDNAVELMRRLDARFPSPGKPRL*
Ga0070761_1000665414	3300005591	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRQPSPARENAFRDAIDNAVELMRRLDARFPTADRSR*
Ga0070761_101230454	3300005591	Soil	VAGMFLVRRLAGLDRRPSPARENALHDAIGNAVELMRRLDARFPISGKIRQ*
Ga0070762_100420323	3300005602	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENALHDAIGNAVELMRRLDARFPISGKIRQ*
Ga0070762_100558485	3300005602	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDREPSPARENAFRDAIDNAVELMRRLDARFPTADRSR*
Ga0070762_101039903	3300005602	Soil	RRWYVVLAMVEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFTDSIDNAIELMRRLDARFPNPAKPR*
Ga0070762_101811112	3300005602	Soil	MSDEARKKLIYLAAAMFLCRKLEALELRPSPAREMAFRNAIEMASELERLKWIYRNT*
Ga0070762_101991693	3300005602	Soil	LIYLVAGMLLCRKLDVLEGRPSPAREMAFRDAIETATELMRR
Ga0070762_108043891	3300005602	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPAQENAFRDAIDNAVELMRRIDARFPPGAKS
Ga0070763_102499951	3300005610	Soil	MDEGRKKLIYLAAGMFLVRRLAGLDREPSPARENAFRDAIDNAVELMRRLDARFPTADRSR*
Ga0070764_100346681	3300005712	Soil	GRKKLIYLVAGMFLVRRLAGLDSRPSPARENAFRDAIDNAVELMRRLDARFPSSAKPR*
Ga0070764_102752692	3300005712	Soil	KKLIYLVAGMFLVRRLAGLDRRPSPAREDAFRDSIDNAVELMRRLDARFPIPAKPR*
Ga0070766_100141593	3300005921	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPAREDAFRDSIDNAVELMRRLDARFPIPAKPR*
Ga0070766_101004493	3300005921	Soil	VNDEARKKLIYLVAGMLLCRKLAALEGRPSPAREMAFRDAIETATELMRRVEARFPT
Ga0070766_102583483	3300005921	Soil	LVAGMFLVRRLAGLDRRPSPARENALHDAIGNAVELMRRLDARFPISGKIRQ*
Ga0075014_1005360702	3300006174	Watersheds	MDEGRKKLIYLVAGMFLVRRLAGLDRQPSPARENAFRDAIDNAVELMRKIDARLPAAGK*
Ga0070765_10000100011	3300006176	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPASGK*
Ga0070765_10000306114	3300006176	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRKPSPARENAFTDSIDNAVELMQRLDARLPNPAKPR*
Ga0070765_1012798921	3300006176	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPAREDAFRDSIDNAVELMRRLDARFQIPAKPR*
Ga0116105_11548691	3300009624	Peatland	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPVRENAFRDAIDNAVELMRRLDARFPSPAKPR*
Ga0116125_10051193	3300009628	Peatland	MDKGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDVRFPNAAKPR*
Ga0150983_115172491	3300011120	Forest Soil	VNDEARKKLIYLVAGMLLCRKLAALEGRPSPAREMAFRDAIETATELMRRVEARFPTA
Ga0150983_159598131	3300011120	Forest Soil	MSDEARKKLIYLVAGMLLCRKVAALEGRPSPAREMAFRDAIETATELMRRVEARFPTANK
Ga0182018_105958392	3300014489	Palsa	VSEEARKKLIYLASAMFLCRKLAALDARPSPARELAFREAIDTATELMRRIEARFPNRPK
Ga0182024_100060756	3300014501	Permafrost	MDEGRKKLIYLVSGMFLVRRLAGLDRQPSPARENAFRDAIDNAVELMRRIDARRISQLDGVSSTG*
Ga0187879_101609551	3300017946	Peatland	MDKGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDVRFPNAAKP
Ga0181520_106349401	3300017988	Bog	VSDDARKKLIYLASAMFLCRKLAALDGRPSPARELAFREVIDTATELMRRVEARFPNPAKPR
Ga0187863_103565062	3300018034	Peatland	VSDDARKKLIYLASAMFLCRKLAALDGRPSPARELAFREVIDTATELMRRVEARF
Ga0187887_108185762	3300018043	Peatland	VSDEARKKLIYLASAMFLCRKLAALDGRPSPAREVAFREAIDTATELMRRIEVRFPS
Ga0187890_106946061	3300018044	Peatland	TCYFVLPMDKGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARYPTSGKGR
Ga0210407_101358602	3300020579	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRQPSPARENAFRDAIDNAVELMRRLDARFPTADRS
Ga0210407_109672763	3300020579	Soil	FVFPMDEGRKKLIYLVAGMFLVRRPAGLDRRPSPARENAFRDAIDNAVELMRKIDARFPTPTKT
Ga0210403_1000662915	3300020580	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPSPAKP
Ga0210403_101235413	3300020580	Soil	MDQGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFQNAIDNAVELMRRLDAQFPTPGKA
Ga0210403_102299873	3300020580	Soil	MDEGRKKLIYLAAGMFLVRRLAGLDREPSPARENAFRDAIDNAVELMRRLDARFPTADRS
Ga0210403_110826381	3300020580	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFQSPAKP
Ga0210399_106358293	3300020581	Soil	MDEGRKKLIYLVAGMFLVRRLAGLEQRPSPARESAFRDAIDNAVELWRRIDARFPTGSGS
Ga0210399_108469052	3300020581	Soil	MDEGRKKLIYLAAGMFLVRRLAGLDREPSPARENAFRDAIDNAVELMRRLDARFPTAD
Ga0210395_100205182	3300020582	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRKPSPARENAFTDSIDNAVELMQRLDARLPNPAKP
Ga0210395_101305322	3300020582	Soil	MVEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFTDSIDNAIELMRRLDARFPNPAKP
Ga0210401_100432313	3300020583	Soil	MSDEARKKLIYLVAGMLLCRKLDVLEGRLSPAREMAFRDAIEMASEPMRRVEARFPTANKYVI
Ga0210401_114333202	3300020583	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDHRPSPARENAFRDAIDNAVELMRRLDARFPTPGKP
Ga0210405_100085794	3300021171	Soil	VSDEARKKLIYLASAMFLCRKLAALDGRPSPARELAFREAIDTATELMRRIEARFPNNSRQGQQ
Ga0210405_101731771	3300021171	Soil	KKLIYLVAGMFLVRRLAGLDRRPSPARENAFTDSIDNAIELMRRLDARFPNSAKPR
Ga0210396_105599731	3300021180	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRIDARFPATGK
Ga0210388_101327955	3300021181	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENALHDAIGNAVELMRRLDARFPISGKIRQ
Ga0210388_104954581	3300021181	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPAREDAFRDSIDNAVELMRRLDARFPIPAKP
Ga0210393_104023622	3300021401	Soil	MDEGRKKLVYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPTTGNP
Ga0210397_102901051	3300021403	Soil	IYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPTADRSR
Ga0210387_100006505	3300021405	Soil	MDESRNKLIYLVAGMFLVRRLAGLDRRPSPAREHAFRDAIDNAGELMRRLDARFPTPGKP
Ga0210383_113622712	3300021407	Soil	VTDEARKKLIYLASAMFLCRKLAALDGRPSPARDLAFRDAIDTATELMRRVEARFPNRPK
Ga0210394_111989862	3300021420	Soil	MEEGRKRIIYMAAAMFLCRRLAGLEGRPSPARENAYRDSIDNAVELWRRIEARFPSPGK
Ga0210384_107155731	3300021432	Soil	VNDEARKKLIYFVAGMLLCRKLAALEGRPSPAREMAFRDAIETATELTRQVEARFPAVNK
Ga0210391_100341941	3300021433	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPAREDAFRDSIDNAVELMRRLDARFPIPAK
Ga0210391_100446337	3300021433	Soil	LVAGMFLVRRLAGLDRRPSPAREDAFRDSIDNAVELMRRLDARFPIPAKPR
Ga0210391_100639911	3300021433	Soil	MDEGRKKLIYLVAGMSLVRRLAGLDRRPSPARENALHDAIGNAVELMRRLDARFPISGKIRQ
Ga0210391_101840213	3300021433	Soil	MDEGRKKLIYIVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLVARFPNPAKP
Ga0210391_108708942	3300021433	Soil	MDEPRKKIIFLAAAMFLCRRLAGLERRPSPAREAAYRDSINDAVELMRRIDARFPNGKP
Ga0210390_1000013979	3300021474	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELKRRIDTQFPTLAKT
Ga0210398_100569565	3300021477	Soil	MIFYLLMDEARKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRIDARFPPTAKS
Ga0210398_100717792	3300021477	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRKPSPARENAFREAIYHAVELMRRLDARFPNPGKP
Ga0210410_113387422	3300021479	Soil	YFVFPMDEGRKKLIYLVAGMFLVRRPAGLDRRPSPARENAFRDAIDNAVELMRKIDARFPTPTKT
Ga0210409_110915902	3300021559	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRQPSPARESAFRDAIDNAVELMRRLDARFPTADRS
Ga0210409_111113551	3300021559	Soil	MDEGRKKLSYLVAGMFLVRRLASLDRKPSPARENAFRDAIDNAVELMRHLDARFPNPTKP
Ga0242657_11296181	3300022722	Soil	KLIYLAAGMFLVRRLAGLDREPSPARENAFRDAIDNAVELMRRLDARFPTADRSR
Ga0224562_10205141	3300022733	Soil	VSDEARKKLIYLASAMFLCRKLAGLDGRPSPARELAFREAIDTATELMRRVEARFAGQPK
Ga0224572_10241781	3300024225	Rhizosphere	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPNLGKP
Ga0228598_10503741	3300024227	Rhizosphere	MDESRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPT
Ga0228598_11067372	3300024227	Rhizosphere	VSDEARKKLIYLASAMFLCRKLAGLDGRPSPARELAFREAIDTATEL
Ga0224564_10126823	3300024271	Soil	MDESRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPTSSKGRE
Ga0257154_10011513	3300026467	Soil	MDESRKKLIYLVAGMFLVRRLAGLDRRPSPAGENAFRDAIDNTVELMRRLDAGFSASGQ
Ga0257154_10031664	3300026467	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDSIDNAVELMQRVAVRFPAPNKP
Ga0209010_100047312	3300027370	Forest Soil	VSDEARKKLIYLASAMFLCRKLAALDGRPSPARELAFRDSIDLAVELLRRINARFPMTNKGK
Ga0209008_100036912	3300027545	Forest Soil	MDEGRKKLIYRVAGMFLVRRSAGLDRRPARENAFRDAIDNVVERMRRVDARFPAPGK
Ga0209525_10028168	3300027575	Forest Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFQDAIDNAAELMRRIDARFPTSSKI
Ga0209274_100050591	3300027853	Soil	VFVMDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVESMRRIDARFPPTAKS
Ga0209274_102448603	3300027853	Soil	KLIYLVAGMFLVRRLAGLDRRPSPARENALHDAIGNAVELMRRLDARFPISGKIRQ
Ga0209169_100286983	3300027879	Soil	MLSPMDEGRKKLIYLVAGMFLVRRLAGLDSRPSPARENAFRDAIDNAVELMRRLDARFPSSAKPR
Ga0209275_100208175	3300027884	Soil	VNDEARKKLIYLVAGMLLCRKLDVLEGRPSPAREMAFRDAIETATELMRRVEARFPTANK
Ga0209275_101391661	3300027884	Soil	QRRWYVVLAMVEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFTDSIDNAIELMRRLDARFPNPAKPR
Ga0209380_100119816	3300027889	Soil	MSDEARKKLIYLAAAMFLCRKLEALELRPSPAREMAFRNAIEMASELERLKWIYRNT
Ga0209380_101542431	3300027889	Soil	DEARKKLIYLVAGMLLCRKLAALEGRPSPAREMAFRDAIETATELMRRVEARFPTANK
Ga0209380_108015761	3300027889	Soil	VNDEARKKLIYLVAGMLLCRKLAALEGRPSPAREMAFRDAIETATELMRRVEARFPTANK
Ga0209624_108414692	3300027895	Forest Soil	MDEGRKKLIYLVAGMFLVRRLAGPDRRPSPARENAFRDAIDNAVELMSRIDARFPNSGKIRQ
Ga0308309_1000163015	3300028906	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRLDARFPASGK
Ga0308309_107876942	3300028906	Soil	MDEGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAVELMRRIDARFPPTAKS
Ga0308309_108502322	3300028906	Soil	RGVNDEARKKLIYLVAGMLLCRKLDVLEGRPSPAREMAFRDAIETATELMRRVEARFPTANK
Ga0310686_10555896842	3300031708	Soil	VKKLIYLVAGMFLVRRLAGLDPRPSPARENAFRDAIDNAVELMRRLDARFPTSGKSR
Ga0310686_1071911122	3300031708	Soil	MEDGRKKLIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNAEELWRRIDPRFPPSNKP
Ga0310686_1076030256	3300031708	Soil	MDEGRKKFIYLVAGMFLVRRLAGLDRRPSPARENAFRDAIDNPVELMRRLDARFPTSGKA
Ga0310686_1104711453	3300031708	Soil	MDEGRKKLIYLVAGMFLVRRLASLDRRPSAARENAFRDAVDNAVELMRRLDARFPNSAKP
Ga0307477_101773142	3300031753	Hardwood Forest Soil	MGDEARKKLIYLVAGMLLRRKLAALEGRRSPAREMAFRDSIEIATELIRRVEARFPTANK
Ga0307478_109873361	3300031823	Hardwood Forest Soil	VNDEARKKLIYLVAGMFLCRKLDALELRPSPAREMAFRDAMETATELMRRVEARFPAANK
Ga0348332_119872563	3300032515	Plant Litter	LVFRMDESRKGLIYLVAGMFLVRRLAGLDRQPSPPRENAFRDAIDNAVELMRRLDASAPILDKN
Ga0348332_122107521	3300032515	Plant Litter	MDEGRKKLLYLVAGMFLVRRFASLDRRPSPARENAFRDAIDNAVELMRRLDARFPNLGKP
Ga0370515_0307770_490_669	3300034163	Untreated Peat Soil	MDEGRKKLIYPATGMFLRAQLAGLDRWPSPARENAFRDAIDNAVERMQGIDARFPTAGKM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080346

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences