Metagenome / Metatranscriptome Family F080404

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080404
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	87 residues
Representative Sequence	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLSEEPRWHLTAASAEALRRTRSWIRRL
Number of Associated Samples	95
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	33.91 %
% of genes from short scaffolds (< 2000 bps)	86.09 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.826 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.783 % of family members)
Environment Ontology (ENVO)	Unclassified (22.609 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.826 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.31% β-sheet: 13.79% Coil/Unstructured: 56.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF04828	GFA	13.04
PF02518	HATPase_c	11.30
PF00072	Response_reg	7.83
PF01546	Peptidase_M20	6.96
PF10262	Rdx	2.61
PF13277	YmdB	1.74
PF13744	HTH_37	1.74
PF01850	PIN	1.74
PF00106	adh_short	0.87
PF01292	Ni_hydr_CYTB	0.87
PF02538	Hydantoinase_B	0.87
PF07704	PSK_trans_fac	0.87
PF05721	PhyH	0.87
PF13305	TetR_C_33	0.87
PF01262	AlaDh_PNT_C	0.87
PF04442	CtaG_Cox11	0.87
PF05014	Nuc_deoxyrib_tr	0.87
PF09720	Unstab_antitox	0.87
PF01757	Acyl_transf_3	0.87
PF01610	DDE_Tnp_ISL3	0.87
PF07883	Cupin_2	0.87
PF02558	ApbA	0.87
PF02581	TMP-TENI	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3791	Uncharacterized conserved protein	Function unknown [S]	13.04
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.74
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.87
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.87
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.87
COG3038	Cytochrome b561	Energy production and conversion [C]	0.87
COG3175	Cytochrome c oxidase assembly protein Cox11	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.87
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	0.87
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.87
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.87
COG4423	Uncharacterized conserved protein	Function unknown [S]	0.87
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.83 %
Unclassified	root	N/A	32.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.83 %
Unclassified	root	N/A	32.17 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.83 %
Unclassified	root	N/A	32.17 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	59.13 %
Unclassified	root	N/A	32.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.57 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.22 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	12.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.09 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.48 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.74 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.87 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.48 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.61 %
Thalassospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae	2.61 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.74 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Geminicoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae	0.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.48 %
Thalassospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	2.61 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.61 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.87 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.87 %
Arboricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Arboricoccus	0.87 %
Trinickia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	0.87 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	0.87 %
Inquilinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus	0.87 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.48 %
Thalassospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	2.61 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.61 %
Arboricoccus pini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Arboricoccus → Arboricoccus pini	0.87 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.87 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.87 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.87 %
Cupriavidus basilensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	0.87 %
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	0.87 %
Trinickia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.48 %
Thalassospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	2.61 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.61 %
unclassified Paenibacillus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus	0.87 %
Cupriavidus basilensis OR16	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis → Cupriavidus basilensis OR16	0.87 %
Arboricoccus pini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Arboricoccus → Arboricoccus pini	0.87 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.87 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.87 %
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	0.87 %
Trinickia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.17 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.48 %
Thalassospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	2.61 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.61 %
Paenibacillus sp. P22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	0.87 %
Cupriavidus basilensis OR16	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis → Cupriavidus basilensis OR16	0.87 %
Arboricoccus pini	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Arboricoccus → Arboricoccus pini	0.87 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.87 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.87 %
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	0.87 %
Trinickia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104725467	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300002568\|C688J35102_119254779	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300003219\|JGI26341J46601_10019913	All Organisms → cellular organisms → Bacteria → Proteobacteria	2199	Open in IMG/M
3300004092\|Ga0062389_100075380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2854	Open in IMG/M
3300005179\|Ga0066684_10684927	Not Available	687	Open in IMG/M
3300005329\|Ga0070683_101035436	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300005340\|Ga0070689_101615434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	589	Open in IMG/M
3300005367\|Ga0070667_101065034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	755	Open in IMG/M
3300005434\|Ga0070709_10052644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2560	Open in IMG/M
3300005436\|Ga0070713_100118278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2320	Open in IMG/M
3300005436\|Ga0070713_100718481	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300005439\|Ga0070711_100171835	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300005439\|Ga0070711_100694786	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300005456\|Ga0070678_101448046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	642	Open in IMG/M
3300005548\|Ga0070665_101313539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → unclassified Paenibacillus → Paenibacillus sp. P22	733	Open in IMG/M
3300005937\|Ga0081455_10063839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3088	Open in IMG/M
3300005937\|Ga0081455_10068238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2960	Open in IMG/M
3300005937\|Ga0081455_11031874	Not Available	508	Open in IMG/M
3300006028\|Ga0070717_10074646	All Organisms → cellular organisms → Bacteria	2835	Open in IMG/M
3300006028\|Ga0070717_10415760	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300006028\|Ga0070717_10475333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Geminicoccaceae → Arboricoccus → Arboricoccus pini	1128	Open in IMG/M
3300006173\|Ga0070716_100563769	All Organisms → cellular organisms → Bacteria → Proteobacteria	851	Open in IMG/M
3300006175\|Ga0070712_100323515	Not Available	1255	Open in IMG/M
3300006237\|Ga0097621_101007338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis → Cupriavidus basilensis OR16	779	Open in IMG/M
3300006755\|Ga0079222_12085653	Not Available	560	Open in IMG/M
3300006804\|Ga0079221_10096977	Not Available	1440	Open in IMG/M
3300006854\|Ga0075425_102734357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300006893\|Ga0073928_11030052	Not Available	559	Open in IMG/M
3300009094\|Ga0111539_11958170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300009101\|Ga0105247_10921751	Not Available	676	Open in IMG/M
3300009174\|Ga0105241_12208487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	546	Open in IMG/M
3300009640\|Ga0116126_1065717	Not Available	1369	Open in IMG/M
3300010146\|Ga0126320_1352125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	683	Open in IMG/M
3300010361\|Ga0126378_10533626	All Organisms → cellular organisms → Bacteria → Proteobacteria	1288	Open in IMG/M
3300010361\|Ga0126378_12827814	Not Available	554	Open in IMG/M
3300010375\|Ga0105239_13618397	Not Available	502	Open in IMG/M
3300010376\|Ga0126381_100242678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2436	Open in IMG/M
3300010376\|Ga0126381_104318864	All Organisms → cellular organisms → Bacteria → Proteobacteria	550	Open in IMG/M
3300011120\|Ga0150983_16105581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	531	Open in IMG/M
3300012212\|Ga0150985_113991524	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300012212\|Ga0150985_120341724	Not Available	762	Open in IMG/M
3300012350\|Ga0137372_10826820	Not Available	663	Open in IMG/M
3300012469\|Ga0150984_108584516	Not Available	500	Open in IMG/M
3300012469\|Ga0150984_112052733	Not Available	534	Open in IMG/M
3300012469\|Ga0150984_117596923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300012961\|Ga0164302_11657844	Not Available	534	Open in IMG/M
3300012985\|Ga0164308_10909298	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300013296\|Ga0157374_11620465	Not Available	671	Open in IMG/M
3300013306\|Ga0163162_11478203	All Organisms → cellular organisms → Bacteria → Proteobacteria	774	Open in IMG/M
3300014167\|Ga0181528_10116341	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300014200\|Ga0181526_10504968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300014325\|Ga0163163_11645399	Not Available	703	Open in IMG/M
3300014492\|Ga0182013_10005112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15453	Open in IMG/M
3300014497\|Ga0182008_10011776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4639	Open in IMG/M
3300015371\|Ga0132258_10862431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2285	Open in IMG/M
3300015371\|Ga0132258_13262775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1117	Open in IMG/M
3300015373\|Ga0132257_102242234	Not Available	707	Open in IMG/M
3300017792\|Ga0163161_10442377	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300017943\|Ga0187819_10686795	Not Available	578	Open in IMG/M
3300018017\|Ga0187872_10016783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4342	Open in IMG/M
3300018044\|Ga0187890_10280402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	936	Open in IMG/M
3300018469\|Ga0190270_12904907	Not Available	541	Open in IMG/M
3300021180\|Ga0210396_11430006	Not Available	571	Open in IMG/M
3300021401\|Ga0210393_11168908	Not Available	620	Open in IMG/M
3300021401\|Ga0210393_11389355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	561	Open in IMG/M
3300021403\|Ga0210397_10034381	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3183	Open in IMG/M
3300021406\|Ga0210386_10179270	All Organisms → cellular organisms → Bacteria → Proteobacteria	1785	Open in IMG/M
3300021474\|Ga0210390_11045478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	665	Open in IMG/M
3300021560\|Ga0126371_10128066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2573	Open in IMG/M
3300021560\|Ga0126371_11764919	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300021560\|Ga0126371_13161620	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300022467\|Ga0224712_10303162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Trinickia	747	Open in IMG/M
3300025898\|Ga0207692_10221187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1122	Open in IMG/M
3300025911\|Ga0207654_11443320	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300025915\|Ga0207693_10257346	Not Available	1369	Open in IMG/M
3300025915\|Ga0207693_10803616	All Organisms → cellular organisms → Bacteria → Proteobacteria	725	Open in IMG/M
3300025916\|Ga0207663_10485719	All Organisms → cellular organisms → Bacteria → Proteobacteria	957	Open in IMG/M
3300025923\|Ga0207681_11242237	Not Available	626	Open in IMG/M
3300025928\|Ga0207700_10236816	Not Available	1554	Open in IMG/M
3300025928\|Ga0207700_10423641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1170	Open in IMG/M
3300025929\|Ga0207664_10740707	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300025929\|Ga0207664_10768642	All Organisms → cellular organisms → Bacteria → Proteobacteria	866	Open in IMG/M
3300025944\|Ga0207661_10858768	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300026023\|Ga0207677_11594253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300026078\|Ga0207702_10303159	Not Available	1516	Open in IMG/M
3300026121\|Ga0207683_11270301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	682	Open in IMG/M
3300027824\|Ga0209040_10000129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	48034	Open in IMG/M
3300028768\|Ga0307280_10318809	Not Available	570	Open in IMG/M
3300028800\|Ga0265338_10054873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3549	Open in IMG/M
3300030741\|Ga0265459_13587716	Not Available	544	Open in IMG/M
3300030743\|Ga0265461_12118338	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300030743\|Ga0265461_12476720	Not Available	611	Open in IMG/M
3300030764\|Ga0265720_1022006	Not Available	529	Open in IMG/M
3300030947\|Ga0075390_10233284	Not Available	607	Open in IMG/M
3300030988\|Ga0308183_1141291	Not Available	585	Open in IMG/M
3300031099\|Ga0308181_1046431	Not Available	810	Open in IMG/M
3300031344\|Ga0265316_11066975	Not Available	561	Open in IMG/M
3300031474\|Ga0170818_105241924	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300031549\|Ga0318571_10375386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	550	Open in IMG/M
3300031708\|Ga0310686_110267969	Not Available	943	Open in IMG/M
3300031747\|Ga0318502_10385007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	833	Open in IMG/M
3300031799\|Ga0318565_10460466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Thalassospira	615	Open in IMG/M
3300031823\|Ga0307478_10410966	All Organisms → cellular organisms → Bacteria → Proteobacteria	1122	Open in IMG/M
3300031846\|Ga0318512_10301804	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300031879\|Ga0306919_11295978	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300031912\|Ga0306921_11938406	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300032008\|Ga0318562_10351904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	856	Open in IMG/M
3300032009\|Ga0318563_10207764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1056	Open in IMG/M
3300032074\|Ga0308173_11152798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300032091\|Ga0318577_10454639	Not Available	611	Open in IMG/M
3300032261\|Ga0306920_101950234	All Organisms → cellular organisms → Bacteria → Proteobacteria	824	Open in IMG/M
3300032261\|Ga0306920_103190515	Not Available	614	Open in IMG/M
3300032783\|Ga0335079_10819645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300032893\|Ga0335069_10915603	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300033134\|Ga0335073_11776182	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.17%
Host-Associated	Host-Associated	27.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.61%
Plants	Host-Associated → Plants	27.83%
Aquatic	Environmental → Aquatic	9.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.17%
Freshwater	Environmental → Aquatic → Freshwater	8.70%
Roots	Host-Associated → Plants → Roots	1.74%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.13%
Loam	Environmental → Terrestrial → Soil → Loam	20.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.35%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.48%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.74%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.74%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.61%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.74%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.74%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030764	Metatranscriptome of plant litter microbial communities from Maridalen valley, Oslo, Norway - NLI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030947	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1047254672	3300000364	Soil	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELIDQKVRCPGCARWQRVTLNEEPRWHLTAA
C688J35102_1192547792	3300002568	Soil	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELIDQKVRCPGCARWQRVTLNEEPRWHLTASAAEALRRTRSWVRRL*
JGI26341J46601_100199132	3300003219	Bog Forest Soil	MRYLPFVLAGGPLLAQVIRDASRDPRRHSLCACCGARMLIEPERLDQTVRCYACARWQRVVVREETPWRLTAASAEALRRTRSWVRRL*
Ga0062389_1000753803	3300004092	Bog Forest Soil	MRWLPLVLARGPLLAQVMRDAHQDPRRHSLCACCGARMLIKPDRADQTVRCPGCARWQRVTVREEVPWRLSAAAAERLRRTASWVRRL*
Ga0066684_106849272	3300005179	Soil	MKYLPLVMTRGPLLAQVIRDAHQDPQRHSLCGYCGGRMPIKPDRSDQTARCPVCYRLQRVSVSEEVPWRLTTASAEALRQTRRWVRRL*
Ga0070683_1010354361	3300005329	Corn Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNEEPRWHLTATSAEALRRTKSWIRRL*
Ga0070689_1016154341	3300005340	Switchgrass Rhizosphere	MKYLPLVMARGALLTSLIRDAQRDPRRQSLCNCCGARMLIKPDLPEQMVRCPGCARWQCVTLREEVPWRLTASSAEALRRTRSW
Ga0070667_1010650342	3300005367	Switchgrass Rhizosphere	MKYLPLVMARGALLTSLIRDAQRDPRRQSLCNCCGARMLIKPDLPEQMVRCPGCARWQCVTLREEVPWRLTASSAEALRRTRSWLRRL*
Ga0070709_100526442	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MRCLPLVMTRGPLLAQAIRDSYQDPRRHSLCSCCGARMLITPDRTDQTVRCPGCARLQRVAVHEETPWRLSAASAEALRRTRSWLRRL*
Ga0070713_1001182782	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLSEEPRWHLTAASAEALRRTRSWIRRL*
Ga0070713_1007184812	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLHEEPPWRLTAAAAESLRRTKSWVRRL*
Ga0070711_1001718354	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRCLPLVMTRGPLLAQAIRDSYQDPRRHSLCSSCGARMLITPDRTDQTVRCPGCARLQRVAVHEEIPWRLSAASAEALRRTRSWLRRL*
Ga0070711_1006947862	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLPLVMARGPLLAQVIRDSYQDPRRHSLCGCCGARMLIRPDVSDQTVRCPACARLQRVTLGEEIPWRLTAAAAEALRQTARWARRL*
Ga0070678_1014480461	3300005456	Miscanthus Rhizosphere	AHRKLAPAGGRPMKYLPLVMTRGPLLAEVMRGIGQDPRRRTLCACCGAKMLIVPGRSDQTVRCPGCSRLQRVTTQEEAPWRLTPSSAEALRRTRSWLRRL*
Ga0070665_1013135391	3300005548	Switchgrass Rhizosphere	MTRGPLLAELMRGVAQDPRRRTLCACCGARMVINPGRSDQMVRCPACSRLQRVTTQEETPWRLTPASAEALRRTRSWLRRL*
Ga0081455_100638391	3300005937	Tabebuia Heterophylla Rhizosphere	MKYLPLVITRGRLLAEVMHGVAQDPRRRTLCGCCGARMVIVPGRSEQTVRCPGCSRLQRVTLQEEAPWRLTPSSAEALRLTRSWLRRL*
Ga0081455_100682383	3300005937	Tabebuia Heterophylla Rhizosphere	MKYLPLVMTRGPLLAEVILGAAQDPRRRTLCACCGARMPIVPGRSDQTVRCPGCSRWQRVAPQEEVPWRLTPAAAEALRLTRSWLRRL*
Ga0081455_110318741	3300005937	Tabebuia Heterophylla Rhizosphere	MKYLPLAMTQGPLLSQLVRDLHKDPRRHTLCNCCGARMLIKPELIDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWVRRL*
Ga0070717_100746464	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRWLPLVLARGPLLAQVMRDAHQDPRRHSLCACCGARMLIKPDRADQTVRCPGCARWQRVTVREEIPWRLSAAAAERLRRTASWVRRL*
Ga0070717_104157602	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRCLPLVMAKGALLAGVIRDSYQDPRRRSLCATCGSRMLIVPDRAEQTVRCPGCARLQRVIVHEEAPWRLSAASAEALRRTRSWLRRL*
Ga0070717_104753331	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLHEEPPWRLTAAAAESLRRTKSW
Ga0070716_1005637692	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRCLPLVMTRGPLLAQAIRDSYQDPRRHSLCSCCGARMLITPDRTDQTVRCPGCARLQRVAVHEEIPWRLSAASAEALRRTRSWLRRP*
Ga0070712_1003235151	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWAR*
Ga0097621_1010073382	3300006237	Miscanthus Rhizosphere	MKFLPLVMARGPLLAQVIRDSYQDPRRHSLCACCGSRMLIRPDVSDQTVRCPACARLQRVTLGEEIPWRLTDAAAEALRQTARWARRL*
Ga0079222_120856532	3300006755	Agricultural Soil	MRFLPLDVARGALLTQIIRDANRDPRRRHLCACCSAKMQIVPDLPEQTVRCPACARWQRVCLGEETPWRLTAAAAEALRRTRSWVRRL*
Ga0079221_100969771	3300006804	Agricultural Soil	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLNEEPRWHLTAASAEALRRTKSWIRRL*
Ga0075425_1027343571	3300006854	Populus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLNEEPRWHLTATSAEALRRTKSWIRRL*
Ga0073928_110300522	3300006893	Iron-Sulfur Acid Spring	MKYLPLVSVRGALLAAVIRDVYQDPRRHSLCTCCGSRMLIKPDLSDQTVRCPGCSRLQRVTLSEEIPWRLTVAAAEALRQTARWARRR*
Ga0111539_119581702	3300009094	Populus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELIDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWVRRL*
Ga0105247_109217512	3300009101	Switchgrass Rhizosphere	MRGIPFALARGALFAQIIRAASEDPRRHSLCPCCGTRMLIQPDRIEQTVRCPGCARWQRVTICEEAPWRLSAASIEALRRTRSWIRRL*
Ga0105241_122084872	3300009174	Corn Rhizosphere	MKYLPLVMARGALLTSLIRDAQRDPRRQSLCNCCGARMLIKPDLPEQMVRCPGCARWQCVTLREEVPWRLTASSAEALRRTRSWLR
Ga0116126_10657171	3300009640	Peatland	MKYLPLVMTRGLLLAQLVRESSQDPRRYRSCGCCGARMAITPDRSEQMARCPGCLRVQRVAEDGEDPWRLTPASAEALRRTKSWVRWV*
Ga0126320_13521252	3300010146	Soil	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELIDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWARRLQ*
Ga0126378_105336261	3300010361	Tropical Forest Soil	LPIARRARYHSTNLEGLPMKYVPLGLATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEVPWRLTAASADALRRTRSWARRL*
Ga0126378_128278141	3300010361	Tropical Forest Soil	MKLVLLSMARGPLLALVIRDFAQDPRRRTLCSCCGAQMLIDPGRSDQIVRCPGCARWQRVTPDTDVPWRLTASSAEALRRTRSWLRRL*
Ga0105239_136183972	3300010375	Corn Rhizosphere	MKYLPLAMTRGPLLAQLIRDASKDPRRHGLCGCCGARMPIKPDRSDQTVRCPVCTRLQRVTVAEEAPWRLTATSAEALRRTARWLRHA*
Ga0126381_1002426782	3300010376	Tropical Forest Soil	MRGIPFALARGALFAQIIRAASEDPRRHSLCRCCGTRMQIQPDRLEQTVRCPGCSRWQRVTVCEEAPWRLSAASVEALRRTRSWVRRL*
Ga0126381_1043188641	3300010376	Tropical Forest Soil	TRGPLLASLIRDAQKDPRRQSLCNCCGARMMIRPELPEQVVRCPGCARWQRVALHEETPWRLTAAAAEALRRTRSWVRRI*
Ga0150983_161055811	3300011120	Forest Soil	MKYLPFVMTRGPLLAQLICEAWQDPRRYRACGCCGARMMILPDRSEQMTRCPACLRPQRVAEDDEVPWRLTPASAEALRRTKTWMRAL*
Ga0150985_1139915241	3300012212	Avena Fatua Rhizosphere	MKYLPLAMTRGPLLAQLIRDAYQDPRRHRLCGCCGARMLIKPDRSDQTVRCPACTRLQRVTVAEEAPWRLTATSAEALRRTARWVRHV*
Ga0150985_1203417241	3300012212	Avena Fatua Rhizosphere	MKYLPLVMTRGPLLAEIIRGASQDPRRRALCGCCGARMLITPGRSDQKVRCPGCSRLQRVTAQEEVPWRLTPASAEALRLTRSWVRRL*
Ga0137372_108268201	3300012350	Vadose Zone Soil	MKYLPLVMTRGPMLAQLIRDAYQDPRRHSLCGSCGARMLINPDRSDQTVRCPACSRLQRVTVREEVPWRLTPTSAEALRRTARWVRRL*
Ga0150984_1085845161	3300012469	Avena Fatua Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQQVRCPGCARWQRVTLNEEPRWHLTATSAEALRRTKSWIRRL*
Ga0150984_1120527332	3300012469	Avena Fatua Rhizosphere	DSASREKLPMKYLPLVSVRGALLAAVIRDSYQDPRRHSLCTCCGSRMLIKPDLSDQTVRSPGCSRLQRVTLSEEVPWRLTAAAAEALRQTARWAR*
Ga0150984_1175969231	3300012469	Avena Fatua Rhizosphere	MKYLPLVMTRGPLLAEVMRGAAQDPRRRALCSCCGARMQISPGRSDQMVRCPGCSRLQRVTVQEEAPWRLTPNAAEALRQTKSWLRRL*
Ga0164302_116578441	3300012961	Soil	MRCLPLVMTRGPLLAQAIRDSYQDPRRHSLCSCCGARMLITPDRTDQTVRCPGCARLQRVAVHEETPWRLSATSAEALRRTRSWLRPL*
Ga0164308_109092982	3300012985	Soil	MKYLPLVMTRGPLLAEVMRGIGQDPRRRTLCACCGAKMLIVPGRSDQTVRCPGCSRLQRVTTQEEAPWRLTPSSAEALRRTRSWLRRL*
Ga0157374_116204651	3300013296	Miscanthus Rhizosphere	MKYLPLAMTRGPLLAQLIRDAPKDPRRHGLCGCCGARMPIKPDRSDQTVRCPVCTRLQRVTVAEEAPWRLTATSAEALRRTARWLRHA
Ga0163162_114782032	3300013306	Switchgrass Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELIDQKVRCPGCARWQRVTLNEEPRWHLTAASAEALRRTKSWIRRL*
Ga0181528_101163412	3300014167	Bog	MKALPFVMTRGAVFAQILCDAGKDPRRNRLCACCGGRMLIEPDRSEQTVRCPACARWQRVSEVEETPWRLSPAAAEALRRTRTWLRRL*
Ga0181526_105049682	3300014200	Bog	MKYLPLVVTRGPLLAQLMLESSQDQQRYRACGCCSARMAIAPDRSEQMTRCPACLRRQRVTEHGEVPWRLTPASAEALRRTKSWVRWV*
Ga0163163_116453992	3300014325	Switchgrass Rhizosphere	MKYLPLVMTRGPLLAEVIRGVAQDPRARALCSCCGARMLISPGRSDQTVRCPGCARLQRVTAEVETPWRLTPSAAEALRRTRSWLRRL*
Ga0182013_1000511210	3300014492	Bog	MKCLPLVMTRGSLLAGLVRESAQDPRRHKACGCCGAQMTITPDRSEQIARCPACFRLQRVTEEGEVPWRLTPASAEALRRTKSWVRWV*
Ga0182008_100117762	3300014497	Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWARRLQ*
Ga0132258_108624312	3300015371	Arabidopsis Rhizosphere	MRYLPLALTRGPLLAQVIRESYRDPRRHSLCAYCGSRMLIEPERIEQTVRCPACARWQRVVMREEVPWRLSAASAEALRRTRSWVRRL*
Ga0132258_132627752	3300015371	Arabidopsis Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQQVTLSEEPRWHLTAASAEALRRTRSWIRRL*
Ga0132257_1022422342	3300015373	Arabidopsis Rhizosphere	GDVSGALIRPIGRMRAPETSPMKYLPLVMTRGPLLAEVIRGVAQDPRSRALCSCCGARMLISPGRSDQTVRCPGGARLQRVTAEVEAPWRLTPSAAEALRRTRSWLRRL*
Ga0163161_104423771	3300017792	Switchgrass Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPDLVDQKVRCPGCARWQRVTLNEEPRWHLTAASAEALRRTKSWIRRL
Ga0187819_106867951	3300017943	Freshwater Sediment	MKYLPLLMTRGPLLAQLIRESSQDPRRYRACGCCGARMVITPDRSEQMVRCPACLRLQRVTEHGELPWRLTPASAEALRRTKSWMR
Ga0187872_100167835	3300018017	Peatland	MKYLPLVMTRGLLLAQLVRESSQDPRRYRSCGCCGARMAITPDRSEQMARCPGCLRVQRVAEDGEDPWRLTPASAEALRRTKSWVRWV
Ga0187890_102804022	3300018044	Peatland	MKCLPLVMTRGSLLAGLVRESAQDPRRHKACGCCGAQMTITPDRSEQIARCPACFRLQRVTEEGEVPWRLTPASAEALRRTKSWVRWV
Ga0190270_129049072	3300018469	Soil	MRYLPLAMTRGPLLAQLIRDAYQDPRRHGLCGCCGARMLIKPDRSDQRVRCPACARLQRVTVAEEAPWRLTATSAE
Ga0210396_114300063	3300021180	Soil	FALARGALLAQIIRAASEDPRRHSLCQCCGTRMLIQPDRIEQTVRCPGCSRWQLVTICEEAPWRLSAASIEALRRTRSWIRRL
Ga0210393_111689081	3300021401	Soil	MRGIPFALARGALFAQIIRAASEDPRRHSLCQCCGTRMLIQPDRIEQTVRCPGCSRWQLVTICEEAPWRLSAASIEALRRT
Ga0210393_113893552	3300021401	Soil	MRWLPLVLARGPLLAQVMRDAHQDPRRHSLCACCGARMLIKPDRADQTVRCPGCARWQRVTVREEVPWRLSAAAAERSRRTASWVR
Ga0210397_100343813	3300021403	Soil	MRGIPFALARGALFAQIIRAASEDPRRHSLCQCCGTRMLIQPDRIEQTVRCPGCSRWQLVTICEEAPWRLSAASIEALRRTRSWIRRL
Ga0210386_101792703	3300021406	Soil	MKYLPFVMTRGPLLAQLICEAWQDPRRYRACGCCGARMMILPDRSEQMTRCPACLRPQRVAEDDEVPWRLTPASAEALRRTKTWMRAL
Ga0210390_110454782	3300021474	Soil	MRWLPLALARGPLLAQVMRDAHQDPRRHSLCACCGARMLIKPDWADQRVRCPGCTRWQRVTVREEVPWRLSAAAAERLRRTASWVRRL
Ga0126371_101280662	3300021560	Tropical Forest Soil	MRFLPLDVARGALLTQIIRDANRDPRRRHLCAYCSAKMQIVPDLPEQTVRCPACARWQRVCLGEETPWRLTAAAAEALRRTRSWVRRL
Ga0126371_117649192	3300021560	Tropical Forest Soil	LLDGAARRPYHGAVKYLPLMMTRGPLLAALIRDVYQDPHRRSLCGCCGARMLIRPDMPEQIVRCPACSREQRVAPGDEVPWRLTASSAEALRRTRSWLRRL
Ga0126371_131616201	3300021560	Tropical Forest Soil	MKYLPLIMTRGPLLASLIRDAQKDPRRQSLCNCCGARMMIRPELPEQVVRCPGCARWQRVALHEETPWRLTTASAEALRRTRSWVRRI
Ga0224712_103031621	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGRARWQRVTLNEEPRWHLTAASAEALRRTKSWIRRL
Ga0207692_102211872	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRCLPLVMTRGPLLAQAIRDSYQDPRRHSLCSCCGARMLITPDRTDQTVRCPGCARLQRVAVHEETPWRLSAASAEALRRTRSWLRRL
Ga0207654_114433201	3300025911	Corn Rhizosphere	MKYLPLVMARGALLTSLIRDAQRDPRRQSLCNCCGARMLIKPDLPEQMVRCPGCARWQCVTLREEVPWRLTASSAEALRRTRSWL
Ga0207693_102573461	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWAR
Ga0207693_108036162	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLVMARGALLTSLIRDAQRDPRRQSLCNCCGARMLIKPDLPEQMVRCPGCARWQCVTLREEVPWRLTA
Ga0207663_104857191	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLSEEPRWHLTAA
Ga0207681_112422371	3300025923	Switchgrass Rhizosphere	MKYLPLVMTRGPLLAEVMRGIGQDPRRRTLCACCGAKMLIVPGRSDQTVRCPGCSRLQRVTTQEEAPWRLTPSSAEALRRTRSWLRRL
Ga0207700_102368162	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLNEEPRWHLTAASAEALRRTKSWIRRL
Ga0207700_104236412	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELVDQKVRCPGCARWQRVTLSEEPRWHLTAASAEALRRTRSWIRRL
Ga0207664_107407071	3300025929	Agricultural Soil	SPMKYLPLVMARGALLTSLIRDAQRDPRRQSLCNCCGARMLIKPDLPEQMVRCPGCARWQCVTLREEVPWRLTASSAEALRRTRSWLRRL
Ga0207664_107686421	3300025929	Agricultural Soil	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLSEEPRWHLTA
Ga0207661_108587682	3300025944	Corn Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNEEPRWHLTATSAEALRRTKSWIRRL
Ga0207677_115942532	3300026023	Miscanthus Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNEEPRWHLTATSAEALRRTKSWIRR
Ga0207702_103031592	3300026078	Corn Rhizosphere	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNVEPRWHLTATSAEALRRTKSWIRRL
Ga0207683_112703011	3300026121	Miscanthus Rhizosphere	AHRKLAPAGGRPMKYLPLVMTRGPLLAEVMRGIGQDPRRRTLCACCGAKMLIVPGRSDQTVRCPGCSRLQRVTTQEEAPWRLTPSSAEALRRTRSWLRRL
Ga0209040_1000012942	3300027824	Bog Forest Soil	MRYLPFVLAGGPLLAQVIRDASRDPRRHSLCACCGARMLIEPERLDQTVRCYACARWQRVVVREETPWRLTAASAEALRRTRSWVRRL
Ga0307280_103188091	3300028768	Soil	SSHRSAPSAVRIAGHPCNPYDCATLERSSMKYLPLVSVRGALLAAAIRESYQDPRRLSLCTCCGSRMLIKPDLSDQTVRCPGCSRLQRVTLSEEVPWRLTAAAAEALRQTARWAR
Ga0265338_100548733	3300028800	Rhizosphere	MKYLPLVMTRGPLLAQAIRDCSQDPRRFRACGCCGARMGIAPDRAEQVVRCPACLRVQRVTESGEVPWRLTPASAEALRRTKSWVRWV
Ga0265459_135877161	3300030741	Soil	MKYLPLVMARGPLLAQIIRESSQDPRRFTACACCGARMSIAPDRSEQTTRCPACLRTQRVTEQREVPWRLTPTSAEALRRTKAWIRWI
Ga0265461_121183381	3300030743	Soil	MKCLPLVMTQGQLLAQVIRDSSQDPRRYRACGCCGARMVIAPDRSVQMARCPACLRIQRVAEERDVPWRLTPTSAEALRRTKSWV
Ga0265461_124767201	3300030743	Soil	PLVMARGPLLAQIIRESSQDPRRFTACACCGARMSIAPDRSEQTTRCPACLRTQRVTEQREVPWRLTPTSAEALRRTKAWIRWI
Ga0265720_10220061	3300030764	Soil	MRGIPFALARGALLAQIIRAASEDPRRHSLCQCCGTRMLIQPDRIEQTVRCPGCARWQRVTICEEAPWRLSAASIEALRRTRSWIRRL
Ga0075390_102332841	3300030947	Soil	MRGIPFALARGALFAQVIRAASEDPRRHSLCPCCGTRMLIQPDRIEQTVRCPGCARWQRVTICEEAPWRLSAASVEALRRTRSWIRRL
Ga0308183_11412911	3300030988	Soil	PMKYLPLVSVRGALLAAVIRDSYQDPRRHSLCTCCGSRMLIKPDLSDQTVRCPGCSRLQRVTMCEEVPWRLTAAAAEALRQTARWAR
Ga0308181_10464312	3300031099	Soil	LPLVSVRGALLAAAIRDSYQDPRRLSLCTCCGSRMLIKPDLSDQTVRCPGCSRLQRVTMCEEVPWRLTAAAAEALRQTARWAR
Ga0265316_110669751	3300031344	Rhizosphere	MRGIPFALARGALFAQIIRAASEDPRRHSLCQCCGTRMLIQPDRIEQTVRCPGCARWQLVTICEEAPWHLSAASIEALRRT
Ga0170818_1052419241	3300031474	Forest Soil	PMRYLPLALTRGPLLAQVIRESYRDPRRHSLCACCGSRMLIQPERIEQTVRCPACARWQRVIMREEVPWRLSAASAEALRRTRSWVRRL
Ga0318571_103753862	3300031549	Soil	MKYVPLGLATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEVPWRLTAASADALRRTRSW
Ga0310686_1102679691	3300031708	Soil	MRCLPLIMTRGALLAELIREASADPRRHRACGCCGAQMVITPDRSEQMARCPACLRVQRVTEHGEVPWRLTPAAAEALRRTKSWMRWL
Ga0318502_103850071	3300031747	Soil	PLLTQVIREASQDPRRYRLCGCCGARMLIKPDRIEQTVRCPACARLQRVTVREEDPWRLTAASAEALRRTASWLRRL
Ga0318565_104604662	3300031799	Soil	MKYVPLGLATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEAPWRLTAASAD
Ga0307478_104109662	3300031823	Hardwood Forest Soil	VKCLPLVMAQGALLAQVVRDHAQDSRRHRPCGCCGAPMAIVPDRSEQTVRCPTCLRVQRVTENCEVPWRLTAASAEALRRTKSWVRWV
Ga0318512_103018041	3300031846	Soil	VPLGLATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEVPWRLTAASADALRRTRSWARRL
Ga0306919_112959781	3300031879	Soil	MKYVPLVLAGGPLLAQVIRDAYQDPRRRSLCACCGARMQIEPERLEQTARCPGCARWQRVVVGEEAPWRLTAASAEALRRTRSWVRRL
Ga0306921_119384061	3300031912	Soil	MKYVPLVLAGGPLLAQVIRDAYQDPRRRSLCACCGARMQIEPERLEQIARCPGCARWQNVVVREEAPWRLTAASAEALRRTRSWVRRL
Ga0318562_103519042	3300032008	Soil	LPIARRARYHSTNLEGLPMKYVPLGLATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEVPWRLTAASADALRRTRSWARRL
Ga0318563_102077641	3300032009	Soil	MKYVPLGLATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEVPWRLTAASADALRRTRSWARRL
Ga0308173_111527982	3300032074	Soil	MKYLPLAMTQGPLLSQVVRDLHKDPRRRTLCSCCGARMLIKPELLDQKVRCPGCARWQRVTLNEEPRWHLTAAAAEALRRTRSWARRLQ
Ga0318577_104546391	3300032091	Soil	MKYLPLALTRGPLLTQIIREAYQDPRRHRLCDCCGARMLIKPDRTDQMVRCPACARLQRVTVREEDPWRLTAASAEALRRTASWLRRL
Ga0306920_1019502341	3300032261	Soil	ATGALLAQVMRDAAQDRRRHSLCACCGARILIEPERLEQTVRCFACARWQRVVAREEVPWRLTAASADALRRTRSWARRL
Ga0306920_1031905151	3300032261	Soil	MKYVPLVLAGGPLLAQVIRDAYQDPRRRSLCACCGARMQIEPERLEQIARCPGCARWQNVVVREEAPWRLTA
Ga0335079_108196452	3300032783	Soil	MRGLPFALAAGALFSEVISAANNDTRRSSVCGCCGSRIPIQPDRTDQTVRCPACTRWQRVTVREETPWRLTAASAEALRRTGRWLRRL
Ga0335069_109156032	3300032893	Soil	MVKYLPFMVTRGPLLAALIRDISQDPRRRCLCACCGAQMLIKPEMPDQTVRCPACSRLQRVTPGDEIPWRLTASAAEALRRTRTWLRRL
Ga0335073_117761822	3300033134	Soil	MRFLPVDVARGALLSQLIRDAGQDPRRRHLCAYCSARMEIEPDRPEQTVRCPACARWQRVCHGEETPWRLTAAAAEALRLTRSWIRRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080404

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences