Metagenome / Metatranscriptome Family F080438

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080438
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	62 residues
Representative Sequence	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARESAGRPRRQEIMRNLPKS
Number of Associated Samples	88
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.13 %
% of genes near scaffold ends (potentially truncated)	49.57 %
% of genes from short scaffolds (< 2000 bps)	85.22 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.565 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.956 % of family members)
Environment Ontology (ENVO)	Unclassified (26.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.826 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.52% β-sheet: 0.00% Coil/Unstructured: 43.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01339	CheB_methylest	6.96
PF00118	Cpn60_TCP1	1.74
PF02705	K_trans	0.87
PF00487	FA_desaturase	0.87
PF00881	Nitroreductase	0.87
PF00535	Glycos_transf_2	0.87
PF00011	HSP20	0.87
PF11994	DUF3489	0.87
PF09849	DUF2076	0.87
PF01370	Epimerase	0.87
PF01739	CheR	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	13.91
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.74
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.74
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.87
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.87
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.87
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
All Organisms	root	All Organisms	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
cellular organisms	root	All Organisms → cellular organisms	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.57 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.09 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.00 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.57 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Ascomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
saccharomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Pezizomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
leotiomyceta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Eurotiomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Eurotiomycetidae	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Eurotiales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Aspergillaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales → Aspergillaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Penicillium	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales → Aspergillaceae → Penicillium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.57 %
Penicillium brasilianum	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales → Aspergillaceae → Penicillium → Penicillium brasilianum	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111019\|2221156419	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Eurotiomycetes → Eurotiomycetidae → Eurotiales → Aspergillaceae → Penicillium → Penicillium brasilianum	958	Open in IMG/M
3300002245\|JGIcombinedJ26739_100633330	All Organisms → cellular organisms → Bacteria → Proteobacteria	947	Open in IMG/M
3300002245\|JGIcombinedJ26739_101061243	Not Available	696	Open in IMG/M
3300003219\|JGI26341J46601_10030567	Not Available	1749	Open in IMG/M
3300003351\|JGI26346J50198_1034593	Not Available	512	Open in IMG/M
3300004152\|Ga0062386_100219101	Not Available	1501	Open in IMG/M
3300004152\|Ga0062386_101109053	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300004631\|Ga0058899_12150798	Not Available	825	Open in IMG/M
3300004635\|Ga0062388_101114876	Not Available	775	Open in IMG/M
3300005435\|Ga0070714_100094099	All Organisms → cellular organisms → Bacteria	2630	Open in IMG/M
3300005435\|Ga0070714_102107120	Not Available	550	Open in IMG/M
3300005437\|Ga0070710_10018276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3604	Open in IMG/M
3300005437\|Ga0070710_10700769	Not Available	715	Open in IMG/M
3300005445\|Ga0070708_100322214	Not Available	1456	Open in IMG/M
3300005454\|Ga0066687_10055016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1871	Open in IMG/M
3300005518\|Ga0070699_100138493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2148	Open in IMG/M
3300005554\|Ga0066661_10830228	Not Available	540	Open in IMG/M
3300005712\|Ga0070764_10767800	Not Available	597	Open in IMG/M
3300005921\|Ga0070766_10046243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2430	Open in IMG/M
3300005921\|Ga0070766_10293831	Not Available	1042	Open in IMG/M
3300006028\|Ga0070717_11738848	Not Available	564	Open in IMG/M
3300006172\|Ga0075018_10625765	Not Available	575	Open in IMG/M
3300006176\|Ga0070765_101421079	Not Available	653	Open in IMG/M
3300006176\|Ga0070765_101900693	Not Available	558	Open in IMG/M
3300006755\|Ga0079222_11343439	Not Available	656	Open in IMG/M
3300006904\|Ga0075424_101092077	Not Available	850	Open in IMG/M
3300006954\|Ga0079219_10794265	Not Available	742	Open in IMG/M
3300007258\|Ga0099793_10022905	Not Available	2582	Open in IMG/M
3300007788\|Ga0099795_10112434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1081	Open in IMG/M
3300007788\|Ga0099795_10490159	Not Available	572	Open in IMG/M
3300007788\|Ga0099795_10604366	Not Available	522	Open in IMG/M
3300010343\|Ga0074044_10035328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3491	Open in IMG/M
3300010396\|Ga0134126_12917555	Not Available	517	Open in IMG/M
3300011270\|Ga0137391_10174230	Not Available	1875	Open in IMG/M
3300012202\|Ga0137363_10318826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1280	Open in IMG/M
3300012202\|Ga0137363_10368004	Not Available	1192	Open in IMG/M
3300012205\|Ga0137362_10046261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3525	Open in IMG/M
3300012205\|Ga0137362_10324434	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300012285\|Ga0137370_10023480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3125	Open in IMG/M
3300012361\|Ga0137360_11783275	Not Available	521	Open in IMG/M
3300012362\|Ga0137361_10187495	All Organisms → cellular organisms → Bacteria → Proteobacteria	1867	Open in IMG/M
3300012362\|Ga0137361_10308500	Not Available	1449	Open in IMG/M
3300012582\|Ga0137358_10705639	Not Available	674	Open in IMG/M
3300012582\|Ga0137358_11093208	Not Available	509	Open in IMG/M
3300012683\|Ga0137398_10976866	Not Available	588	Open in IMG/M
3300012685\|Ga0137397_11208868	Not Available	544	Open in IMG/M
3300012917\|Ga0137395_10051993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2580	Open in IMG/M
3300012922\|Ga0137394_10675042	Not Available	871	Open in IMG/M
3300012925\|Ga0137419_10595208	Not Available	888	Open in IMG/M
3300012927\|Ga0137416_10382034	Not Available	1189	Open in IMG/M
3300012927\|Ga0137416_11138696	Not Available	701	Open in IMG/M
3300012930\|Ga0137407_11916195	Not Available	565	Open in IMG/M
3300012984\|Ga0164309_11190616	Not Available	639	Open in IMG/M
3300014157\|Ga0134078_10569025	Not Available	538	Open in IMG/M
3300015372\|Ga0132256_102695889	Not Available	596	Open in IMG/M
3300019256\|Ga0181508_1024440	Not Available	730	Open in IMG/M
3300020583\|Ga0210401_10701141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	873	Open in IMG/M
3300020583\|Ga0210401_11410832	Not Available	554	Open in IMG/M
3300021168\|Ga0210406_10214733	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300021168\|Ga0210406_10536072	Not Available	921	Open in IMG/M
3300021171\|Ga0210405_10236544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1446	Open in IMG/M
3300021171\|Ga0210405_11058381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300021178\|Ga0210408_10049153	All Organisms → cellular organisms → Bacteria → Proteobacteria	3299	Open in IMG/M
3300021178\|Ga0210408_10145785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1873	Open in IMG/M
3300021180\|Ga0210396_11079710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300021403\|Ga0210397_11611937	Not Available	504	Open in IMG/M
3300021406\|Ga0210386_11775423	Not Available	508	Open in IMG/M
3300021406\|Ga0210386_11780301	Not Available	507	Open in IMG/M
3300021432\|Ga0210384_10855477	Not Available	809	Open in IMG/M
3300021478\|Ga0210402_11677832	Not Available	562	Open in IMG/M
3300021559\|Ga0210409_11234512	Not Available	623	Open in IMG/M
3300022527\|Ga0242664_1075115	Not Available	659	Open in IMG/M
3300022533\|Ga0242662_10247476	Not Available	577	Open in IMG/M
3300024347\|Ga0179591_1084993	All Organisms → cellular organisms → Bacteria → Proteobacteria	3644	Open in IMG/M
3300025915\|Ga0207693_10377281	Not Available	1109	Open in IMG/M
3300025922\|Ga0207646_10047447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3852	Open in IMG/M
3300025929\|Ga0207664_10693971	Not Available	915	Open in IMG/M
3300025929\|Ga0207664_10845589	Not Available	823	Open in IMG/M
3300026340\|Ga0257162_1044805	Not Available	557	Open in IMG/M
3300026374\|Ga0257146_1026108	Not Available	949	Open in IMG/M
3300026490\|Ga0257153_1033787	Not Available	1056	Open in IMG/M
3300026490\|Ga0257153_1041273	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300026494\|Ga0257159_1040318	Not Available	787	Open in IMG/M
3300026494\|Ga0257159_1079272	Not Available	569	Open in IMG/M
3300026496\|Ga0257157_1033393	Not Available	851	Open in IMG/M
3300026514\|Ga0257168_1093665	Not Available	668	Open in IMG/M
3300026557\|Ga0179587_10364841	Not Available	938	Open in IMG/M
3300027104\|Ga0208095_1002710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1164	Open in IMG/M
3300027381\|Ga0208983_1104100	Not Available	523	Open in IMG/M
3300027512\|Ga0209179_1051028	Not Available	887	Open in IMG/M
3300027610\|Ga0209528_1073792	Not Available	755	Open in IMG/M
3300027698\|Ga0209446_1004580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3403	Open in IMG/M
3300027727\|Ga0209328_10254901	Not Available	523	Open in IMG/M
3300027846\|Ga0209180_10591932	Not Available	613	Open in IMG/M
3300027884\|Ga0209275_10861704	Not Available	522	Open in IMG/M
3300027903\|Ga0209488_10052707	Not Available	2996	Open in IMG/M
3300027903\|Ga0209488_11022453	Not Available	570	Open in IMG/M
3300028047\|Ga0209526_10041060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3255	Open in IMG/M
3300028536\|Ga0137415_10073490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3279	Open in IMG/M
3300028536\|Ga0137415_10094179	All Organisms → cellular organisms → Bacteria → Proteobacteria	2849	Open in IMG/M
3300028906\|Ga0308309_11016105	Not Available	718	Open in IMG/M
3300030990\|Ga0308178_1017601	Not Available	1096	Open in IMG/M
3300031057\|Ga0170834_103225470	Not Available	706	Open in IMG/M
3300031081\|Ga0308185_1030580	Not Available	650	Open in IMG/M
3300031099\|Ga0308181_1043662	Not Available	826	Open in IMG/M
3300031099\|Ga0308181_1059542	Not Available	745	Open in IMG/M
3300031128\|Ga0170823_17449999	Not Available	591	Open in IMG/M
3300031231\|Ga0170824_105847109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1269	Open in IMG/M
3300031231\|Ga0170824_110926677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300031231\|Ga0170824_126168864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1207	Open in IMG/M
3300031753\|Ga0307477_10269872	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300031820\|Ga0307473_11274117	Not Available	549	Open in IMG/M
3300034644\|Ga0370548_021330	Not Available	991	Open in IMG/M
3300034680\|Ga0370541_023974	Not Available	704	Open in IMG/M
3300034680\|Ga0370541_033833	Not Available	624	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.30%
Aquatic	Environmental → Aquatic	6.96%
Plants	Host-Associated → Plants	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.30%
Freshwater	Environmental → Aquatic → Freshwater	6.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.74%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.83%
Loam	Environmental → Terrestrial → Soil → Loam	22.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.09%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111019	Grass soil microbial communities from Rothamsted Park, UK - FP1 and FP2 (Mercury 0.2g/kg) assembled	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2221928529	2209111019	Grass Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATILEARESADQ
JGIcombinedJ26739_1006333302	3300002245	Forest Soil	MYSPELLRVEASECRRGAIGKSARVERTLLALAERLESQATILEARESADQRQEIVLDLPKC*
JGIcombinedJ26739_1010612432	3300002245	Forest Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGRPRRQEKMRNLPKS*
JGI26341J46601_100305674	3300003219	Bog Forest Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKSAELPRRQELMRILPRS*
JGI26346J50198_10345932	3300003351	Bog Forest Soil	MYSPELLRIEAAECRRGAIGKSARVERTLLGLAERLESRATILEVRESADRPRRQEMMRNLPKC*
Ga0062386_1002191014	3300004152	Bog Forest Soil	AAECRRGAIGKSARVERTLLGLAERLESRATILEVRESADRPRRQEMMRNLPKC*
Ga0062386_1011090531	3300004152	Bog Forest Soil	QMDRMYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATILEVRESADRPPRQEIMRNLPRS*
Ga0058899_121507981	3300004631	Forest Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSQQHQ*
Ga0062388_1011148761	3300004635	Bog Forest Soil	MFSPELLRVEAAECRRGAIGKSVRVERTLLALAERLESQATVLEARKSAELPGRQEIMLILPQS*
Ga0070714_1000940992	3300005435	Agricultural Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAERLEPKATALEARKSAVLPGNHAQYP*
Ga0070714_1021071202	3300005435	Agricultural Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAKRLESQATVLEARKSAELPPREEIMRMLPRS*
Ga0070710_100182766	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MFSPELLRVEAAECRRGAIGKSARVERTLLALAERLEPKATALEARKSAVLPGNHAQYP*
Ga0070710_107007692	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MCSPELLRVEAAECRRGAIGKSARVERTLLALAKRLESQATVLEARKSAELPRR
Ga0070708_1003222144	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYSPELLRVEAAECRRGAIGKSIRVERTLLALAERLEAQATVLEARETADRPLRQEIMRKFPTS*
Ga0066687_100550161	3300005454	Soil	EAAECRRGAIGKSARVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSQQHQ*
Ga0070699_1001384932	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLEAQATALEGRESADRPPRLQLTLDLPKSWPDQ*
Ga0066661_108302282	3300005554	Soil	MYSPELLRVEAAECRRGAIGKSTRVERTLLALAERLESQATILETRESADRRQEIMRDLPKS*
Ga0070764_107678001	3300005712	Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKPAELP
Ga0070766_100462435	3300005921	Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSEQRQ*
Ga0070766_102938311	3300005921	Soil	MYSPELLRIEAAECRRGALGKNVRVERTLLALAKRLESEATILEAQGSADWLWPPEMIRNFPKSEPDQ*
Ga0070717_117388482	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MYSPELLRIEAAECRPGAIGKSARVERTLLALAERLESEVTILEARESPDRPWRGAMIRNLPKSYLALT*
Ga0075018_106257651	3300006172	Watersheds	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKSAELPRR
Ga0070765_1014210791	3300006176	Soil	MYSPELLRIEAAECRRGALGKNVRVERTLLALAKRLESEATILEAQGSADWLWPPEMIRNFPKSEPDR*
Ga0070765_1019006931	3300006176	Soil	PELLRVEAAECRRGAIGKSARVERTLLALAERLESETTVLEARKSAELPRREEIMRILPRS*
Ga0079222_113434391	3300006755	Agricultural Soil	RVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKSAELPRRQDIMRILPRS*
Ga0075424_1010920771	3300006904	Populus Rhizosphere	VEAAECRRGAIGKSARVERTLLALAERLESQATILEGQGSAPEITRHLPKSWPDR*
Ga0079219_107942652	3300006954	Agricultural Soil	MYSPELLRVEAAECRRGAIGKSTRVERTLLALAERLDSQAAVLEARRSADRPRRRQIMRNLPKSWSDQ*
Ga0099793_100229053	3300007258	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAQRLESQAAVLEARESADLPRHREIIRNLSKSSPDQ*
Ga0099795_101124343	3300007788	Vadose Zone Soil	MCSPKLLRVEAAECRRGAIGKSARVERTLLALAERLESRATILEGREMADRL
Ga0099795_104901592	3300007788	Vadose Zone Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRHREIMRNLSKSSPDQ*
Ga0099795_106043661	3300007788	Vadose Zone Soil	MYSPELLRIEAAECRRGAIGKSARVERTLLALAERLESEATILEARESP
Ga0074044_100353285	3300010343	Bog Forest Soil	MHSPELLRIEAAECRRGAVGKSVRVERTLLALAVRLESEAMSLEARGSADWHSTRK*
Ga0134126_129175551	3300010396	Terrestrial Soil	MEAPEALRIEAAECRRGAVGKSVRVERTLLALAERLESEAMILDARGPAGQPRRPAMMHHPVKA*
Ga0137391_101742302	3300011270	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGRPRRQEIIRNLP*
Ga0137363_103188264	3300012202	Vadose Zone Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATALEGRESADRPPRLQLMLDLPKSWPDQ
Ga0137363_103680041	3300012202	Vadose Zone Soil	KRSNVPVDRMYSPELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRHREIMRNLSKSSPDQ*
Ga0137362_100462611	3300012205	Vadose Zone Soil	MYSPELLRIEAAECRRGAIGKSARVERTLLALAERLESEATILEARESPDRPWRGAMIRNLPKS*
Ga0137362_103244342	3300012205	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQPTVLEARESAGRPRRQGKMRNLPKS*
Ga0137370_100234802	3300012285	Vadose Zone Soil	MYSPKLLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSQQHH*
Ga0137360_117832752	3300012361	Vadose Zone Soil	MYSPELLRVEAAGCRRGAIGKSTRVERTLLALAERLQSLATLLEAEPSIELLRRQYMMHKLPP
Ga0137361_101874952	3300012362	Vadose Zone Soil	MYSPELLRVEASECRRGAIGKSARVERTLLALAERLESQATILEARESADQRQEIMLDLPKS*
Ga0137361_103085003	3300012362	Vadose Zone Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLARHREIMRNLSKSSPDQ*
Ga0137358_107056392	3300012582	Vadose Zone Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRLREIMRNLSKSSPDQ*
Ga0137358_110932081	3300012582	Vadose Zone Soil	YSSELLRVEAAECRRGAIGKSAGVERTLLALAERLESQATVLEARKSTKLPRRQEIIRNLPQS*
Ga0137398_109768661	3300012683	Vadose Zone Soil	TRRSNGQVDRMYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGRPRRQEKMRNLPKS*
Ga0137397_112088681	3300012685	Vadose Zone Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATALEGRESADRPPRLQLMLDLPKS*
Ga0137395_100519933	3300012917	Vadose Zone Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRLREIMRNLS*
Ga0137394_106750421	3300012922	Vadose Zone Soil	PSNGQVDRMYPPELLRVEAAECRRGAIGKSPRVERTLLALAERLESQATILEARESADQRQEIMLDLPKS*
Ga0137419_105952082	3300012925	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGLSRRQEIMRNLPKS*
Ga0137416_103820344	3300012927	Vadose Zone Soil	MYSPELLRVEASECRRGAIGKSARVERTLLALAERLESQATIIEARESADQRQEIMLDLP
Ga0137416_111386962	3300012927	Vadose Zone Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARESAGRPRRQEIMRNLPKS*
Ga0137407_119161952	3300012930	Vadose Zone Soil	MYPPELLRVEAAECRRGAIGMSPRVGRTLLALAERLESQATILETRESADRRQEIMRDLPKS*
Ga0164309_111906161	3300012984	Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATILEARESADQRQEIML
Ga0134078_105690251	3300014157	Grasslands Soil	MYSPELLRIEAAECRRGAIGKSVRVGRTLLALAERLESQATILEARESADRRQEIMRDLP
Ga0132256_1026958891	3300015372	Arabidopsis Rhizosphere	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKSAELPRRQGIMRILPRS
Ga0181508_10244402	3300019256	Peatland	MEAPEALRIEAAECRRGAVGKSARVERTLLALARRLESEAMMLDAHGPGGEPRRPAMTLH
Ga0210401_107011411	3300020583	Soil	MDKMCSPELLRIEAAQCRRGAIGKRARVERTLLALAERLESQATVLEARKSAELP
Ga0210401_114108321	3300020583	Soil	NPVNRMYSPEFLRVEAAECRRGAIAKSTRVERTLLALAERLESQATALEARGSADRPIVPTPS
Ga0210406_102147334	3300021168	Soil	MYPPELLRVEAAECRRGAIGKSPRVERTLLALSERLESQATILEARESADRRQEIVRDLPKSEPDRVSEDNEFPPSP
Ga0210406_105360721	3300021168	Soil	MFSPELLKVEAAGCRRGAIGKSARVERTLLALAERLEPKATALEARKSAVLPGNHAQYP
Ga0210405_102365441	3300021171	Soil	MFSPELLRVEAAECRRGAIGKSARVQRTLLALAERLESQAMVLEARKSAVDDVQSP
Ga0210405_110583811	3300021171	Soil	MYPPELLRVKAAECRRGAIGKNARVERTLLALAKRLESQATVLEARKSAELPPREEIMR
Ga0210408_100491533	3300021178	Soil	MYPPELLRIEAAECRRGAIGKSPSVERTLSALAERLESQATILEARESADRPRRQEITLPKS
Ga0210408_101457852	3300021178	Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAKRLESQATVLEARKSAELPPREKIMRMLPRS
Ga0210396_110797101	3300021180	Soil	MAKCRMYPPELLRVKAAECRRGAIGESARVERTLLALAKRLESQATVLEARKS
Ga0210397_116119371	3300021403	Soil	LKVEAAGCRRGAIGKSARVERTLLALAERLEPKATALEARKSAVLPGNHAQYP
Ga0210386_117754231	3300021406	Soil	PELLRVEASECRRGAIGKSARVERTLLALAERLESQATALEARESADRPIVPTPS
Ga0210386_117803011	3300021406	Soil	SPELLRVEAAECRRGAIGKSARVQRTLLALAERLESQAMVLEARKSAVDDVQSP
Ga0210384_108554771	3300021432	Soil	MYSPELLRVEAAECRRGAIGKSTRVERTLLALAERLEAQATVLEAREATDRPMRQEIMRKLPKS
Ga0210402_116778322	3300021478	Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRHREIMRNLSKSSPDQ
Ga0210409_112345121	3300021559	Soil	RISLLPKRSNGPMNRMYSPELLRVEAAECRRGAIGKSTRVERTLLALAERLESQATALEPRESADRPIVTTPS
Ga0242664_10751151	3300022527	Soil	MYSPKLLRVEAAECRRGAIGKSARIERTLLALAERLESQATVLEARKSAELPPREK
Ga0242662_102474762	3300022533	Soil	MYSPKLLRAEAAECRRGAIGKSARVERTLLALAERLESQATALEARGSADRPIVPTPS
Ga0179591_10849935	3300024347	Vadose Zone Soil	MCSPKLLRVEAAECRRGAIGKSVRVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSQQHQ
Ga0207693_103772811	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGLPRRQERMRNLPKS
Ga0207646_100474473	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MYSPELLRVEAAECRRGAIGKSIRVERTLLALAERLEAQATVLEARETADRPLRQEIMRKFPTS
Ga0207664_106939713	3300025929	Agricultural Soil	ELLRIEAAECRRGAIGKSARVERTLLALAERLESRATVLEARKLAKLPRRQEILRNLPQS
Ga0207664_108455892	3300025929	Agricultural Soil	GNGQVDKMYSPELLRVEAAECRRGAIGKSARVERTLLALAKRLESQATVLEARKSAELPPREEIMRMLPRS
Ga0257162_10448051	3300026340	Soil	MYSPELLRVEASECRRGAIGKSARVERTLLALAKRLESQATVLEARKSAELPPREEIMRMLPRS
Ga0257146_10261082	3300026374	Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRLREIMRNLSKSSPD
Ga0257153_10337871	3300026490	Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRHREIMRNLT
Ga0257153_10412731	3300026490	Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARESADLPRLREIMRNLS
Ga0257159_10403182	3300026494	Soil	MCSPELLRVEAAECRRGAIGKSGRVERTLLALAKRLESQATVLEASKSAE
Ga0257159_10792722	3300026494	Soil	PELLRVEAAECRRGAIGKSARVERTLLALAKRLESQATVLEARKSAELPPREEIMRMLPR
Ga0257157_10333931	3300026496	Soil	SPELLRVEAAECRRGAIGKSARIERTLLALAERLESQATVLEARKSAELPRRQEIMRILPRS
Ga0257168_10936651	3300026514	Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARESADLPRHREIMRNLSKSSPDQ
Ga0179587_103648411	3300026557	Vadose Zone Soil	MYSLELLRVEAAECRRGAIGKSARVERTLLALAARLESQAMVLEVRELADLPRRQKIMRNLSTLA
Ga0208095_10027101	3300027104	Forest Soil	RVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSEQR
Ga0208983_11041002	3300027381	Forest Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGLSRRQEIMRNPPSPSLTNN
Ga0209179_10510281	3300027512	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESADLP
Ga0209528_10737921	3300027610	Forest Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESAGLPRRQEIMRNLSKS
Ga0209446_10045805	3300027698	Bog Forest Soil	MYSPELLRIEAAECRRGAIGKSARVERTLLGLAERLESRATILEVRESADRPRRQEMMRNLPKC
Ga0209328_102549011	3300027727	Forest Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVREARKPAELPRRQEIMRILPRSQQH
Ga0209180_105919321	3300027846	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGRPRRQ
Ga0209275_108617041	3300027884	Soil	MYSPKLLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARKPAELPRRQEIMRILPRSQ
Ga0209488_100527072	3300027903	Vadose Zone Soil	MYSSELLRVEAAECRRGAIGKSARVERTLLALAQRLESQATVLEARESADLPRLREIMRNLSKSSPDQ
Ga0209488_110224531	3300027903	Vadose Zone Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQPTVLEARESAGRPRR
Ga0209526_100410603	3300028047	Forest Soil	MYSPELLRIEAAECRRGAIGKSARVERTLLALAERLESEATILEARESPDRPWRGAMIRNLPKS
Ga0137415_100734903	3300028536	Vadose Zone Soil	MYSPELLRVEASECRRGAIGKSARVERTLLALAERLESEATILEARESADQRQEIMLDLPKS
Ga0137415_100941792	3300028536	Vadose Zone Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESQATVLEARESAGRPRRQEKMRNLPKS
Ga0308309_110161052	3300028906	Soil	MYSPELLRIEAAECRRGALGKNVRVERTLLALAKRLESEATILEAQGSADWLWPP
Ga0308178_10176011	3300030990	Soil	MYSPELLRVEAAECRRGAMGKSARVERTLLALAERLESEATVLEARESAGLPQRQEAMRNLPKSYPDQ
Ga0170834_1032254702	3300031057	Forest Soil	MCSPELLRVEAAECRREAIGKSARVERTLLALAERLESQATVLEGRKSAELPRRQ
Ga0308185_10305801	3300031081	Soil	MYSPELLRVEAAECRRGAMGKSARVERALLALAERLESEATVLEARESAGLPQRQEAMRNLPKSYP
Ga0308181_10436622	3300031099	Soil	MYSPELLRVEAAECRRGAIGKSDRVERTLLALAERLESQATVLEARESAELTRRQEIVRNLPKSWPHQ
Ga0308181_10595421	3300031099	Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESEATVLEARESAGLPQRQEAMRN
Ga0170823_174499991	3300031128	Forest Soil	MCSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEGRKSAELPR
Ga0170824_1058471093	3300031231	Forest Soil	RVYSPEFLRVEAAECRRGAIGKRARVERTLLALAERLESQATVLEARESDDRPIVPTPS
Ga0170824_1109266772	3300031231	Forest Soil	MANCRMYSSELLRVEAAECRRGAIGKSARVERTLLALAERLESQAKVLETRKSAELPRRQEIMR
Ga0170824_1261688641	3300031231	Forest Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATVLEARESDDRPIVPTPS
Ga0307477_102698722	3300031753	Hardwood Forest Soil	MYSPELLRVEAAECRRGAIGKSARVERTLLALAERLESQATALEARESADRPIVPTPS
Ga0307473_112741171	3300031820	Hardwood Forest Soil	MYSPELLRVEASECRRGAIGKSARVERTLLALAERLESQATILEARESAD
Ga0370548_021330_237_443	3300034644	Soil	MYSPELLRVEAAECRRGAMGKSARVERALLALAERLESEATVLEARESAGLPQRQEAMRNLPKSYPDQ
Ga0370541_023974_2_148	3300034680	Soil	MYSPELLRVEAAECRRGAIGKSARVERTLVALAERLESQATVLEAKVSA
Ga0370541_033833_23_223	3300034680	Soil	MYSPQLLRVEAAECRREAIGKSARVKRTLLALAERLEFQATVLEVRKSAELPRRREIMCDLPKVLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080438

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences