Metagenome Family F080608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080608
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	48 residues
Representative Sequence	MSGQLALGLSEVLVAAAVWEALPPERQREVTVMLARLLARLLEAERDE
Number of Associated Samples	95
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	32.17 %
% of genes from short scaffolds (< 2000 bps)	83.48 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.087 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (7.826 % of family members)
Environment Ontology (ENVO)	Unclassified (20.870 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.652 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.58% β-sheet: 0.00% Coil/Unstructured: 43.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00239	Resolvase	39.13
PF13408	Zn_ribbon_recom	11.30
PF01695	IstB_IS21	9.57
PF07508	Recombinase	6.96
PF00665	rve	1.74
PF14801	GCD14_N	0.87
PF12728	HTH_17	0.87
PF00990	GGDEF	0.87
PF13683	rve_3	0.87
PF08897	DUF1841	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	46.09
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	39.13
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	9.57
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.74
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.74
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.74
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.09 %
Unclassified	root	N/A	13.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.09 %
Unclassified	root	N/A	13.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.09 %
Unclassified	root	N/A	13.91 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	75.65 %
Unclassified	root	N/A	13.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	72.17 %
Unclassified	root	N/A	13.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	62.61 %
Unclassified	root	N/A	13.91 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.87 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	54.78 %
Unclassified	root	N/A	13.91 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2.61 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	54.78 %
Unclassified	root	N/A	13.91 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	54.78 %
Unclassified	root	N/A	13.91 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.87 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459004\|F62QY1Z02IUGZT	Not Available	500	Open in IMG/M
3300001536\|A1565W1_10421614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300002568\|C688J35102_118188486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300002568\|C688J35102_118444102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300002568\|C688J35102_118644731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300004080\|Ga0062385_10459013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	776	Open in IMG/M
3300004081\|Ga0063454_101840372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300004082\|Ga0062384_100410278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300004153\|Ga0063455_100690678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	685	Open in IMG/M
3300004153\|Ga0063455_101003805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300004463\|Ga0063356_101053856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1167	Open in IMG/M
3300004463\|Ga0063356_101530236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	989	Open in IMG/M
3300005166\|Ga0066674_10079374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1509	Open in IMG/M
3300005367\|Ga0070667_101215362	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005435\|Ga0070714_101640446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300005435\|Ga0070714_101716195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300005562\|Ga0058697_10183371	Not Available	937	Open in IMG/M
3300006034\|Ga0066656_10214942	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1228	Open in IMG/M
3300007004\|Ga0079218_13659868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300009012\|Ga0066710_103757030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300009088\|Ga0099830_10692317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	839	Open in IMG/M
3300009088\|Ga0099830_10860184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	749	Open in IMG/M
3300009090\|Ga0099827_10448703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1105	Open in IMG/M
3300009137\|Ga0066709_101689680	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300009137\|Ga0066709_102323312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300009400\|Ga0116854_1012111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2398	Open in IMG/M
3300009672\|Ga0116215_1264524	Not Available	751	Open in IMG/M
3300009774\|Ga0123339_10140717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1184	Open in IMG/M
3300009840\|Ga0126313_10435426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1044	Open in IMG/M
3300010038\|Ga0126315_10044263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2389	Open in IMG/M
3300010038\|Ga0126315_10288825	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300010039\|Ga0126309_10449733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M
3300010044\|Ga0126310_10937428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300010045\|Ga0126311_10322212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300010045\|Ga0126311_10661764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	832	Open in IMG/M
3300010301\|Ga0134070_10051570	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1388	Open in IMG/M
3300010325\|Ga0134064_10062979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1158	Open in IMG/M
3300010331\|Ga0123336_10196294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1116	Open in IMG/M
3300010379\|Ga0136449_100191488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3911	Open in IMG/M
3300010379\|Ga0136449_100340549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2703	Open in IMG/M
3300010379\|Ga0136449_100360399	All Organisms → cellular organisms → Bacteria	2606	Open in IMG/M
3300010379\|Ga0136449_101921590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	878	Open in IMG/M
3300010403\|Ga0134123_11521231	Not Available	714	Open in IMG/M
3300012043\|Ga0136631_10078491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1246	Open in IMG/M
3300012093\|Ga0136632_10158017	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300012183\|Ga0136624_1086823	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1083	Open in IMG/M
3300012188\|Ga0136618_10341682	Not Available	645	Open in IMG/M
3300012206\|Ga0137380_10556929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300012211\|Ga0137377_10584838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1054	Open in IMG/M
3300012355\|Ga0137369_10606801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300012356\|Ga0137371_11290490	Not Available	541	Open in IMG/M
3300012360\|Ga0137375_10908956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300012526\|Ga0136637_1071376	Not Available	1202	Open in IMG/M
3300012668\|Ga0157216_10393689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300012680\|Ga0136612_10270394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	863	Open in IMG/M
3300013308\|Ga0157375_13189980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300013765\|Ga0120172_1112900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300014501\|Ga0182024_10203705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2702	Open in IMG/M
3300015163\|Ga0167665_1010243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1906	Open in IMG/M
3300017789\|Ga0136617_10707525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300017961\|Ga0187778_10178241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1348	Open in IMG/M
3300017966\|Ga0187776_11146665	Not Available	580	Open in IMG/M
3300017966\|Ga0187776_11545978	Not Available	511	Open in IMG/M
3300017974\|Ga0187777_10197250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1356	Open in IMG/M
3300017974\|Ga0187777_10408283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	940	Open in IMG/M
3300017974\|Ga0187777_10427968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	918	Open in IMG/M
3300017974\|Ga0187777_10730924	Not Available	704	Open in IMG/M
3300018422\|Ga0190265_12298275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	641	Open in IMG/M
3300018468\|Ga0066662_10915993	Not Available	862	Open in IMG/M
3300018469\|Ga0190270_13436117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300018481\|Ga0190271_11318404	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300019356\|Ga0173481_10449212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	644	Open in IMG/M
3300020150\|Ga0187768_1023406	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1325	Open in IMG/M
3300021377\|Ga0213874_10302099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300021388\|Ga0213875_10282646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	784	Open in IMG/M
3300022561\|Ga0212090_10075170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3395	Open in IMG/M
3300025474\|Ga0208479_1005705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2648	Open in IMG/M
3300025527\|Ga0208714_1018299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1734	Open in IMG/M
3300025703\|Ga0208357_1011469	All Organisms → cellular organisms → Bacteria	3905	Open in IMG/M
3300025898\|Ga0207692_10667375	Not Available	673	Open in IMG/M
3300025929\|Ga0207664_11580969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300025933\|Ga0207706_11349236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300026327\|Ga0209266_1006056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	7236	Open in IMG/M
3300026529\|Ga0209806_1209743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	671	Open in IMG/M
3300027576\|Ga0209003_1108591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300027701\|Ga0209447_10222007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300027854\|Ga0209517_10286515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	969	Open in IMG/M
3300027882\|Ga0209590_10522532	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300027911\|Ga0209698_11279575	Not Available	538	Open in IMG/M
3300029943\|Ga0311340_10117247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2881	Open in IMG/M
3300030007\|Ga0311338_10198591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2316	Open in IMG/M
3300030617\|Ga0311356_10428972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1301	Open in IMG/M
3300031520\|Ga0272428_1083471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2136	Open in IMG/M
3300031544\|Ga0318534_10697589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	574	Open in IMG/M
3300031670\|Ga0307374_10601872	Not Available	556	Open in IMG/M
3300031708\|Ga0310686_110041661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	851	Open in IMG/M
3300031719\|Ga0306917_10489935	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300031834\|Ga0315290_10131027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2141	Open in IMG/M
3300031903\|Ga0307407_10608762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	814	Open in IMG/M
3300032001\|Ga0306922_12048357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300032002\|Ga0307416_102413126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300032159\|Ga0268251_10113186	Not Available	982	Open in IMG/M
3300032160\|Ga0311301_10312828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2500	Open in IMG/M
3300032160\|Ga0311301_10692441	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300032177\|Ga0315276_12526743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300032783\|Ga0335079_10356593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1585	Open in IMG/M
3300032783\|Ga0335079_10633795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1124	Open in IMG/M
3300032805\|Ga0335078_10014822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11562	Open in IMG/M
3300032805\|Ga0335078_10017829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10558	Open in IMG/M
3300032805\|Ga0335078_10992368	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300032828\|Ga0335080_11772295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300032829\|Ga0335070_10056750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4275	Open in IMG/M
3300032892\|Ga0335081_10460279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1615	Open in IMG/M
3300032898\|Ga0335072_11320752	Not Available	630	Open in IMG/M
3300034131\|Ga0334911_001191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3065	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.43%
Host-Associated	Host-Associated	9.57%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.52%
Aquatic	Environmental → Aquatic	13.91%
Plants	Host-Associated → Plants	9.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.04%
Freshwater	Environmental → Aquatic → Freshwater	13.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.35%
Peat	Environmental → Terrestrial → Peat	2.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.74%
Roots	Host-Associated → Plants → Roots	1.74%
Phylloplane	Host-Associated → Plants → Phylloplane	1.74%
Sediment	Environmental → Aquatic → Sediment	0.87%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.65%
Loam	Environmental → Terrestrial → Soil → Loam	9.57%
Ice	Environmental → Aquatic → Freshwater → Ice	8.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.61%
Lake	Environmental → Aquatic → Freshwater → Lake	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.74%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.74%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Clay	Environmental → Terrestrial → Soil → Clay	0.87%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.43%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.83%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	6.09%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.22%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.61%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.96%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	6.09%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.61%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	2.61%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.61%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.74%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.74%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.74%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.74%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.87%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.87%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459004	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm (2)	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009774	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - lysozymeSSSS metaG	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010331	Glacier valley bacterial and archeal communities from Borup Fiord, Nunavut, Canada, to study Microbial Dark Matter (Phase II) - ?SSSS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012183	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ469 (22.06)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012526	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ857 (21.06)	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015163	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb1b, glacier snout)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300022561	Borup_combined assembly	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025703	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031520	Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4B_00594690	2170459004	Grass Soil	MSGQLALGLSEVLVAAAVWETVPPERQREITVQLARLLARLMEAERDE
A1565W1_104216142	3300001536	Permafrost	LALVTSEEVVAAAVWETLPVEVQHAIALALARMLARLIEAERDE*
C688J35102_1181884862	3300002568	Soil	VSGQLALAISEQRLVAAAVWEALPVEAQREVTVRLARLLARVLEGERDE*
C688J35102_1184441022	3300002568	Soil	ALAVSEERLVAAAVWETLPPEVQREVTVRLARLLARLVEAERDE*
C688J35102_1186447312	3300002568	Soil	VSGQLALATSEQVVAAAVWETLPVECRQRVVVKLASVLAALMEAERDE*
Ga0062385_104590132	3300004080	Bog Forest Soil	MSGQLALVMGEQTVVGAAVWETLTPAAQREIVLGLARLLARLVEGERDE*
Ga0063454_1018403722	3300004081	Soil	ALVMSEMVVPAAVWETLPPGAQQEIAVGLARLVARLVEAARDE*
Ga0062384_1004102782	3300004082	Bog Forest Soil	VSGQLALVMSEQTVVGAAVWETLPPATQQAIVLALARLLARLVEEERDE*
Ga0063455_1006906781	3300004153	Soil	VSGQLALAISEQRLVAAAVWEALPVEAQREVTVRLARLLARVLEG
Ga0063455_1010038051	3300004153	Soil	VSGQLALAVSEERVVAAAVWETLPPEVQRAVTVRLARLLARLVEAE
Ga0063356_1010538562	3300004463	Arabidopsis Thaliana Rhizosphere	MSGQLALGLGEALVAAAIWETLPAERQREVTVMLARLLARLLEAERDE*
Ga0063356_1015302362	3300004463	Arabidopsis Thaliana Rhizosphere	MSGQLALALREEMVVPAAVWEALPAEAQQQVTLKLARLVARLLEAERDE*
Ga0066674_100793742	3300005166	Soil	MSGQLALGLSEVLVAAAVWESLPPERQREVTIQLAWLLARLMEAERDE*
Ga0070667_1012153621	3300005367	Switchgrass Rhizosphere	MTEARVSGQLALAVSGESVVAAVVWETLPPEVQREMTVRLARLLAKLV
Ga0070714_1016404462	3300005435	Agricultural Soil	MPGQLALVIETEAVAPAAVWESLPPERQLRVALGLAGLLARLMEAARDE*
Ga0070714_1017161952	3300005435	Agricultural Soil	MSGQLALVIDSETVVAAAVWEALPIERRVELTVRLARLLARLVEAERDE*
Ga0058697_101833711	3300005562	Agave	MSGQLALATGEEVLVPAAMWETLPAERRLEVAFRLARLLARLMEAERDD*
Ga0066656_102149422	3300006034	Soil	MSGQLALGLSEVLVAAAVWESLPPERQREVTIQLAWLLARLMEAE
Ga0079218_136598682	3300007004	Agricultural Soil	LALVIDSEAVVAAAVWEALPAERRLEVTVRLARLLATLIEAERDE*
Ga0066710_1037570302	3300009012	Grasslands Soil	MSGQLALALCEETVVPAAAWETLPAEAQRQVTRALARLLARLLAGERDE
Ga0099830_106923172	3300009088	Vadose Zone Soil	GQLALALREETVVPAAAWETLPPEAQLQVTLKLARLVARLLEAERDE*
Ga0099830_108601841	3300009088	Vadose Zone Soil	MSGQLALATSEHVVAAAVWEMLPAEVQQALAVALARLVARLVEAERDE*
Ga0099827_104487031	3300009090	Vadose Zone Soil	SVETEVAMSGQLALATGEQVVAAAVWETLPAGVQQAIAIALARLVARLVEAELDE*
Ga0066709_1016896802	3300009137	Grasslands Soil	MSVRLALAMREETVVPAAVWEQLPPERQLEVTIRQARLLARLVEAERDE*
Ga0066709_1023233122	3300009137	Grasslands Soil	MSGQLALVTSEEVVAAAVWETLPIEVQRAVLLALARTLARLIAAARDE*
Ga0116854_10121112	3300009400	Soil	EVAMSGQLALVMSEMVVPAAVWETVPPVAQQEIAVRLARLVARLVEAARDE*
Ga0116215_12645242	3300009672	Peatlands Soil	LAFVMGEQSVVGAAVWETLPPAAQQAIALALARLLARLVEAQRDE*
Ga0123339_101407172	3300009774	Glacier Valley	VKTEVTMSGQLALAIGEEQVAAATWETLPPAVQREVALALARLAARLIGAERDE*
Ga0126313_104354261	3300009840	Serpentine Soil	MSGQLALATSEETLAPAAVWEALSPERQLQVALMLARLLARLVEAERDER*
Ga0126315_100442632	3300010038	Serpentine Soil	MSGQLALTTGEQVVAAAVWETLPPAVQRAIAVRLAKLVARLVEAQRVE*
Ga0126315_102888252	3300010038	Serpentine Soil	MSGQLALATSEETLAPAAVWETLSPERQLQVALMLARLLARLVEAERDER*
Ga0126309_104497332	3300010039	Serpentine Soil	MSGQLALATSEQTIAPAAAWETLPPERQIEVTVRLARLLARLVEAERDER*
Ga0126310_109374282	3300010044	Serpentine Soil	MSGQLALVTSEHVVAAATWETLPPEVQRAIALALARLVARLVEAERDE*
Ga0126311_103222122	3300010045	Serpentine Soil	LALAVSGERVVAAAVWETLPPEVQREVTVRLARLLARLVEAERDE*
Ga0126311_106617642	3300010045	Serpentine Soil	VGVSGQLALAISEQRLVAAAGWETLPVETQREVTVRLARLLARVVEAERDE*
Ga0134070_100515702	3300010301	Grasslands Soil	VKTEVAMSGQLALGLSEVLVAAAVWESLPPERQREVTIQLAWLLARLMEAERDE*
Ga0134064_100629792	3300010325	Grasslands Soil	AMSGQLALGLSEVLVAAAVWESLPPERQREVTIQLAWLLARLMEAERDE*
Ga0123336_101962941	3300010331	Glacier Valley	MSGQLALAIGEEQVAAATWETLPPAVQREVALALARLAARLIGAERDE*
Ga0136449_1001914882	3300010379	Peatlands Soil	VKTEVSVSGQLALVMSEQTVVGAAVWETLPPQAQQEIVLALARLLARLVEEERDE*
Ga0136449_1003405491	3300010379	Peatlands Soil	QLALVMSEQTVVGAAVWETLRPQTQQEIVLVLARLLARLVEG*
Ga0136449_1003603992	3300010379	Peatlands Soil	MSGQLALVIDEETLVAAAVWEMLPLERRVELTRRLARLLARLMEAERDE*
Ga0136449_1019215902	3300010379	Peatlands Soil	MMSGQLALAVSEEMIAPAMVWEALPAQAQMQVARRLARLLAALVEAERDE*
Ga0134123_115212312	3300010403	Terrestrial Soil	ALVLSEQLVVPAAVWETLSPQAQREVTLRLARPLARLVEAARDE*
Ga0136631_100784912	3300012043	Polar Desert Sand	MSGQLALAVSEEKMVAAAVWETLSPQGQQQVTIQLARLLARLIEAERDE*
Ga0136632_101580172	3300012093	Polar Desert Sand	MSGQLALVMSETVVPAAVWEALPPAAQQEIAVRLARLVARLVEAARDE*
Ga0136624_10868232	3300012183	Polar Desert Sand	MSGQLALSMGEETMVATAVWETLPPERQQQVTFELARLLAR
Ga0136618_103416821	3300012188	Polar Desert Sand	LALLMTETVVPAAVWEMLPPASQQEIAVRLARLVARLVEAARDE*
Ga0137380_105569292	3300012206	Vadose Zone Soil	MSGQLTLATSEQIVAAAVWETLPPEVQGLIGLALARLVARLVEAARDE*
Ga0137377_105848382	3300012211	Vadose Zone Soil	MSGQLALVMGETLVAAAVWEALPPVRQREVTIMLARLLARLVEAERDE*
Ga0137369_106068012	3300012355	Vadose Zone Soil	MSGQLALAWGEQQVAPAAVWEALPPERQQQVTRALARLLARLLAGERDE*
Ga0137371_112904901	3300012356	Vadose Zone Soil	MSGQLALALCEETVVAAAVWETLPAETQQQVTLKLARLVARL
Ga0137375_109089562	3300012360	Vadose Zone Soil	ALATSEHVVAAAVWETLPPAVQQALAVALARLVARLVEAERDE*
Ga0136637_10713762	3300012526	Polar Desert Sand	MSGQLALLMTEAVAPPAVWEMLPPASQQEFAGRLARLVARLVEAARDE*
Ga0157216_103936892	3300012668	Glacier Forefield Soil	RWASVVRVGVEPAVKTEVAMSGQLALAMSEEVVVAAATWETLPPMVQREVALALARLAARLIEAERDE*
Ga0136612_102703942	3300012680	Polar Desert Sand	MSGQLALVMSETVVPAAVWEMLPLASQQEIAVRLARLVARLVEAARDE*
Ga0157375_131899802	3300013308	Miscanthus Rhizosphere	LALAVSGESVVAAVVWETLPPEVQREMTVRLARLLAKLVEAERDG*
Ga0120172_11129002	3300013765	Permafrost	VKTEVLMSGQLALATSEHVVAAAVWETLRAEVQQAVAVALARLVARLVEAERDE*
Ga0182024_102037052	3300014501	Permafrost	MMSGQLALVMSEEVLVAAAVWEALPSERQVELTRRLARLLARLMEAERDE*
Ga0167665_10102431	3300015163	Glacier Forefield Soil	MKTEVAMSGQLALAIGEEQVVAAATWETLPPSVQREVALALARLAARLIEAERHE*
Ga0136617_107075252	3300017789	Polar Desert Sand	MSGQLALVMSETVVPAAVWEMLPLASQQEIAVRLARLVARLVEAARDE
Ga0187778_101782412	3300017961	Tropical Peatland	LVIDEASVVPAAVWEALPPQRQLEVAVRLARLLARLLEAARDE
Ga0187776_111466651	3300017966	Tropical Peatland	MSGQLALGLSEVLVAAAVWETLSPECQREITVQLARLLARLVEAERDE
Ga0187776_115459781	3300017966	Tropical Peatland	VAGQLALVIETELVVPAAVWEALPPERQLQVALRLARLLARLM
Ga0187777_101972503	3300017974	Tropical Peatland	LSGQLGLVIDEASVVPAAVWEALPPQRQLEVAVRLARLLARLLEAARDE
Ga0187777_104082832	3300017974	Tropical Peatland	MSGQLALATGEQVVAAAVWEMLPPAVQREVAVRLARLVARLVEAQRDE
Ga0187777_104279682	3300017974	Tropical Peatland	MSGQLALGLSEVLVAAAVWESLPPERQREVTIQLARLLARLVEAERDD
Ga0187777_107309242	3300017974	Tropical Peatland	VSGQLALALEEETVVPAAVWEMLPPERQLELAVRLARLLARLIEAARDE
Ga0190265_122982751	3300018422	Soil	VSGQLALVVSEERVVAAAVWETLPPEAQREVTVRLARLLARLVEG
Ga0066662_109159934	3300018468	Grasslands Soil	VPGQLALVIETETVVPAAGWETLPPEHQLQVALRLARLLARVG
Ga0190270_134361172	3300018469	Soil	MSGQLALVIGEETLVSAAVWETLAPERRLEVTVRLARLLARLVEAERDE
Ga0190271_113184042	3300018481	Soil	MSGQLALVIDSETVAAAAVWEALPSERRREVTVRLAHLLAKLLEAERDE
Ga0173481_104492121	3300019356	Soil	MSGQLALGLGEALVAAAIWETLPAERQREVTVMLARLLARLLEAERDE
Ga0187768_10234063	3300020150	Tropical Peatland	LSGQLGLVIDEASVVPAAVWEALPPQRQLEVAVRLARLLARLLEAARD
Ga0213874_103020991	3300021377	Plant Roots	MSGQLALAVSEEMITPAAVWDTLPAQAQIQVARRLARLLAALVEAERDE
Ga0213875_102826462	3300021388	Plant Roots	VSGPLALVIEEDSVVPAAVWEALPPERQLQVAVRLARLLARLIEAARDE
Ga0212090_100751702	3300022561	Glacier Valley	MSGQLALAIGEEQVAAATWETLPPAVQREVALALARLAARLIGAERDE
Ga0208479_10057053	3300025474	Arctic Peat Soil	MSGQLVLVTDETVAPAAVWETLPPASQQAIAVALARLVARLIEAARHE
Ga0208714_10182991	3300025527	Arctic Peat Soil	MSGQLALVMSETVVAAAVWETLPPASQQAIAVALARLVARLVEAARDE
Ga0208357_10114691	3300025703	Arctic Peat Soil	QLALVMSETVVPAAVWETLPLASQQAIAVALARLVARLVEAARDE
Ga0207692_106673751	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSRQLALGLSEVLVAVAVWETLRPESQREITVQLARLLAR
Ga0207664_115809692	3300025929	Agricultural Soil	MSGQLALVIDSETVVAAAVWEALPIERRVELTVRLARLLARLVEAERDE
Ga0207706_113492362	3300025933	Corn Rhizosphere	MIEARVSGQLALAVSAESVVPAAVWETLSPEVQREVTVRLARLLARLVEAERGE
Ga0209266_10060565	3300026327	Soil	MSGQLALGLSEVLVAAAVWESLPPERQREVTIQLAWLLARLMEAERDE
Ga0209806_12097431	3300026529	Soil	VPGQLALVMDEEAVVPAAVWEALPPERQLEVAVKLARLLARLLEAARDE
Ga0209003_11085911	3300027576	Forest Soil	MSGQLALVVESEAVVPAAVWESLPPERQVQVAIRLARLLARLMEAARDE
Ga0209447_102220071	3300027701	Bog Forest Soil	MSGQLALVMGEQTVVGAAVWETLTPAAQREIVLGLARLLARLVEGERDE
Ga0209517_102865152	3300027854	Peatlands Soil	VSGQLALVMSEQTVVGAAVWETLPPQAQQEIVLALARLLARLVEEERDE
Ga0209590_105225322	3300027882	Vadose Zone Soil	MSGQLALATSEHVVAAAVWEMLPAEVQQALAVALARLVARLVEAERDE
Ga0209698_112795752	3300027911	Watersheds	MSGQLALMTGGTVVAAVVWESLPPAAQREVAVRLARLVARLVEA
Ga0311340_101172473	3300029943	Palsa	MSGQLALGLSEVLVAAAVWESLPPDRQHEITVQLARLLANLMEAERDD
Ga0311338_101985911	3300030007	Palsa	VAMSGQLALGLSEVLVAAAVWESLPPDRQHEITVQLARLLANLMEAERDD
Ga0311356_104289722	3300030617	Palsa	MSGQLALGLSEVLVAAAVWESLPPDRQHEITVQLARLLAKLMEAERDD
Ga0272428_10834711	3300031520	Rock	MSGQLALGLSEVLVAAAVWESLPPERQREVTIQLARLVARLMEAERDE
Ga0318534_106975892	3300031544	Soil	ALVIEETTVVPAAVWEMLPPERQVQVAVSLGRLLARIVEAARDE
Ga0307374_106018721	3300031670	Soil	MSGQLALATGEGVVAAAVWETLPPAVQQAVAVRLARLVARLAWILH
Ga0310686_1100416611	3300031708	Soil	SVSGQLALVMSEQTVVGAAVWETLPPQTQQEIVLVLARLLARLVEGERDE
Ga0306917_104899351	3300031719	Soil	MSGQLALTMGGTVVAAAVWETLPPAVQREVAVRLARLVARLVE
Ga0315290_101310272	3300031834	Sediment	MSGQLALATSEHVVAAAVWETLPAEVQEAIAVVLTRLVARLVEAERDE
Ga0307407_106087621	3300031903	Rhizosphere	LALAMSDERVVAAAVWETLPVEVQREVTVRLARLLARLVEAERGE
Ga0306922_120483571	3300032001	Soil	VIEAEAVVPAAVWESLPIERRLEVTVRLARLLARLVEAERDE
Ga0307416_1024131262	3300032002	Rhizosphere	LALAVSEERLVAVAVWETLPPEVQREVTVRLARLLARLVEAERDE
Ga0268251_101131861	3300032159	Agave	MSGQLALATGEEVLVPAAMWETLPAERRLEVAFRLARLLARLMEAERDD
Ga0311301_103128282	3300032160	Peatlands Soil	VKTEVSVSGQLALVMSEQTVVGAAVWETLPPQAQQEIVLALARLLARLVEEERDE
Ga0311301_106924412	3300032160	Peatlands Soil	MSGQLALVIDEETLVAAAVWEMLPLERRVELTRRLARLLARLMEAERDE
Ga0315276_125267431	3300032177	Sediment	PSTKTEAAMSGQLALATSEHVVAAAVWETLPAEVQEAIAVVLARLVARLVEAERDE
Ga0335079_103565932	3300032783	Soil	MSGQLALVIETEAVVAAAVWESLPVERRLDVTVRLARLLARLVEAERDE
Ga0335079_106337951	3300032783	Soil	MSGQLALGLSEVLVAAAVWEALPPERQREVTVMLARLLARLLEAERDE
Ga0335078_100148224	3300032805	Soil	MSGQLALVIETEAVVPAAVWESLPIERRLEVTVRLARLLARLVEAERDE
Ga0335078_100178292	3300032805	Soil	VSGQLALVIETEAVVAAAVWESLPVERRLDVTVRLARLLARLVEAERDE
Ga0335078_109923682	3300032805	Soil	MSGQLALGLGEALVAAAVWEALPPERQREVTVMLGRLLARLLEAERGE
Ga0335080_117722952	3300032828	Soil	EAPWKTEVRMSGQLALGLSEVLVAAAVWEALPPERQREVTVMLARLLARLLEAERDE
Ga0335070_100567504	3300032829	Soil	MSGQLALETGEQVVAAAVWESLPPEVQRTITVELARLAARLTEAGRDE
Ga0335081_104602792	3300032892	Soil	MSGQLALGLSEVLVAAAVWEALPPERQREVTVMLARLLARLLEAERGE
Ga0335072_113207521	3300032898	Soil	MSGQLALVIETEAVVPAAVWESLPIERRLEVTVRLARLLARLVEA
Ga0334911_001191_537_683	3300034131	Sub-Biocrust Soil	MSGQLALATSEHVVAAATWETLPPEVQRAIALALARLAARLIEAERDE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080608

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences