Metagenome / Metatranscriptome Family F080919

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080919
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	48 residues
Representative Sequence	INFACLPRETGKARALEIDLRRVEANLSTDEEERLSNKYMQKEILQK
Number of Associated Samples	22
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.38 %
% of genes near scaffold ends (potentially truncated)	80.70 %
% of genes from short scaffolds (< 2000 bps)	84.21 %
Associated GOLD sequencing projects	14
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (98.246 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater (81.579 % of family members)
Environment Ontology (ENVO)	Unclassified (81.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (81.579 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.33% β-sheet: 0.00% Coil/Unstructured: 46.67%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF02042	RWP-RK	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
All Organisms	root	All Organisms	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
cellular organisms	root	All Organisms → cellular organisms	0.88 %
Viruses	superkingdom	All Organisms → Viruses	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
Cryptophyceae	class	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
Pyrenomonadales	order	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
Geminigeraceae	family	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
Guillardia	genus	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.25 %
Guillardia theta	species	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	0.88 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007516\|Ga0105050_10656548	Not Available	607	Open in IMG/M
3300007519\|Ga0105055_10115155	Not Available	2782	Open in IMG/M
3300007519\|Ga0105055_10235421	Not Available	1761	Open in IMG/M
3300007519\|Ga0105055_10328297	Not Available	1392	Open in IMG/M
3300007519\|Ga0105055_10383128	Not Available	1243	Open in IMG/M
3300007519\|Ga0105055_10417429	Not Available	1166	Open in IMG/M
3300007519\|Ga0105055_10470627	Not Available	1065	Open in IMG/M
3300007519\|Ga0105055_10559661	Not Available	934	Open in IMG/M
3300007519\|Ga0105055_10699063	Not Available	790	Open in IMG/M
3300007519\|Ga0105055_10728629	Not Available	765	Open in IMG/M
3300007519\|Ga0105055_10738255	Not Available	758	Open in IMG/M
3300007519\|Ga0105055_10773403	Not Available	732	Open in IMG/M
3300007519\|Ga0105055_10838085	Not Available	689	Open in IMG/M
3300007519\|Ga0105055_10926423	Not Available	640	Open in IMG/M
3300007519\|Ga0105055_11102895	Not Available	564	Open in IMG/M
3300007519\|Ga0105055_11207123	Not Available	529	Open in IMG/M
3300007519\|Ga0105055_11232836	Not Available	522	Open in IMG/M
3300007519\|Ga0105055_11236476	Not Available	521	Open in IMG/M
3300007519\|Ga0105055_11269993	Not Available	511	Open in IMG/M
3300007519\|Ga0105055_11300438	Not Available	502	Open in IMG/M
3300007520\|Ga0105054_10034561	Not Available	5510	Open in IMG/M
3300007520\|Ga0105054_10052092	Not Available	4348	Open in IMG/M
3300007520\|Ga0105054_10221750	Not Available	1797	Open in IMG/M
3300007520\|Ga0105054_10408507	Not Available	1154	Open in IMG/M
3300007520\|Ga0105054_10759571	Not Available	714	Open in IMG/M
3300007520\|Ga0105054_10770626	Not Available	707	Open in IMG/M
3300007520\|Ga0105054_10836483	Not Available	664	Open in IMG/M
3300007520\|Ga0105054_10921984	Not Available	617	Open in IMG/M
3300007520\|Ga0105054_11001428	Not Available	581	Open in IMG/M
3300007520\|Ga0105054_11069156	Not Available	554	Open in IMG/M
3300007520\|Ga0105054_11092852	Not Available	545	Open in IMG/M
3300007522\|Ga0105053_10222194	Not Available	1797	Open in IMG/M
3300007522\|Ga0105053_10274875	Not Available	1549	Open in IMG/M
3300007522\|Ga0105053_10291363	Not Available	1486	Open in IMG/M
3300007522\|Ga0105053_10672192	Not Available	789	Open in IMG/M
3300007522\|Ga0105053_10766046	Not Available	714	Open in IMG/M
3300007522\|Ga0105053_10800417	Not Available	691	Open in IMG/M
3300007522\|Ga0105053_11148706	Not Available	529	Open in IMG/M
3300007522\|Ga0105053_11172456	Not Available	521	Open in IMG/M
3300007522\|Ga0105053_11173625	Not Available	521	Open in IMG/M
3300007523\|Ga0105052_10056798	Not Available	2748	Open in IMG/M
3300007523\|Ga0105052_10168790	Not Available	1485	Open in IMG/M
3300007523\|Ga0105052_10268547	Not Available	1138	Open in IMG/M
3300007523\|Ga0105052_10539757	Not Available	752	Open in IMG/M
3300007523\|Ga0105052_10745440	Not Available	619	Open in IMG/M
3300007523\|Ga0105052_10858574	Not Available	569	Open in IMG/M
3300007722\|Ga0105051_10164087	Not Available	1715	Open in IMG/M
3300007722\|Ga0105051_10192680	Not Available	1565	Open in IMG/M
3300007722\|Ga0105051_10329906	Not Available	1147	Open in IMG/M
3300007722\|Ga0105051_10664867	Not Available	762	Open in IMG/M
3300007722\|Ga0105051_10812783	Not Available	677	Open in IMG/M
3300007722\|Ga0105051_10909311	Not Available	633	Open in IMG/M
3300007722\|Ga0105051_11024937	Not Available	590	Open in IMG/M
3300007722\|Ga0105051_11061445	Not Available	578	Open in IMG/M
3300011188\|Ga0136587_1086368	Not Available	781	Open in IMG/M
3300011188\|Ga0136587_1104637	Not Available	711	Open in IMG/M
3300011188\|Ga0136587_1198832	Not Available	525	Open in IMG/M
3300012037\|Ga0136559_1061566	Not Available	978	Open in IMG/M
3300012037\|Ga0136559_1131911	Not Available	680	Open in IMG/M
3300012037\|Ga0136559_1143058	Not Available	654	Open in IMG/M
3300012037\|Ga0136559_1204530	Not Available	552	Open in IMG/M
3300012147\|Ga0136588_1040472	Not Available	787	Open in IMG/M
3300012269\|Ga0136560_1069845	Not Available	665	Open in IMG/M
3300012272\|Ga0136586_1143776	Not Available	583	Open in IMG/M
3300012272\|Ga0136586_1145875	Not Available	580	Open in IMG/M
3300012272\|Ga0136586_1164019	Not Available	550	Open in IMG/M
3300017365\|Ga0186251_1003281	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta	2207	Open in IMG/M
3300022848\|Ga0222674_1021227	Not Available	1120	Open in IMG/M
3300027832\|Ga0209491_10039926	Not Available	4774	Open in IMG/M
3300027832\|Ga0209491_10184077	Not Available	1821	Open in IMG/M
3300027832\|Ga0209491_10195812	Not Available	1741	Open in IMG/M
3300027832\|Ga0209491_10257517	Not Available	1410	Open in IMG/M
3300027832\|Ga0209491_10459330	Not Available	863	Open in IMG/M
3300027832\|Ga0209491_10502691	Not Available	792	Open in IMG/M
3300027832\|Ga0209491_10567163	Not Available	707	Open in IMG/M
3300027832\|Ga0209491_10713276	Not Available	567	Open in IMG/M
3300027848\|Ga0209390_10031218	Not Available	5444	Open in IMG/M
3300027848\|Ga0209390_10119324	Not Available	2456	Open in IMG/M
3300027848\|Ga0209390_10165181	Not Available	1973	Open in IMG/M
3300027848\|Ga0209390_10267796	Not Available	1381	Open in IMG/M
3300027848\|Ga0209390_10603799	Not Available	679	Open in IMG/M
3300027848\|Ga0209390_10825427	Not Available	502	Open in IMG/M
3300027976\|Ga0209702_10249954	Not Available	736	Open in IMG/M
3300027983\|Ga0209284_10087641	Not Available	1663	Open in IMG/M
3300027983\|Ga0209284_10103596	Not Available	1512	Open in IMG/M
3300027983\|Ga0209284_10243141	Not Available	923	Open in IMG/M
3300027983\|Ga0209284_10490681	Not Available	591	Open in IMG/M
3300027983\|Ga0209284_10584629	Not Available	524	Open in IMG/M
3300028373\|Ga0306897_1009299	Not Available	1662	Open in IMG/M
3300028373\|Ga0306897_1066139	Not Available	622	Open in IMG/M
3300028373\|Ga0306897_1080322	Not Available	564	Open in IMG/M
3300028373\|Ga0306897_1092336	Not Available	525	Open in IMG/M
3300028413\|Ga0306870_1083746	Not Available	575	Open in IMG/M
3300032435\|Ga0335398_10081353	Not Available	3231	Open in IMG/M
3300032435\|Ga0335398_10273911	Not Available	1455	Open in IMG/M
3300032435\|Ga0335398_10397106	Not Available	1085	Open in IMG/M
3300032435\|Ga0335398_10403559	Not Available	1071	Open in IMG/M
3300032435\|Ga0335398_10459650	Not Available	959	Open in IMG/M
3300032435\|Ga0335398_10824629	Not Available	561	Open in IMG/M
3300032462\|Ga0335396_10101844	All Organisms → Viruses → Predicted Viral	1893	Open in IMG/M
3300032462\|Ga0335396_10242473	Not Available	1181	Open in IMG/M
3300032462\|Ga0335396_10331130	Not Available	990	Open in IMG/M
3300032462\|Ga0335396_10563734	Not Available	714	Open in IMG/M
3300032462\|Ga0335396_10675682	Not Available	635	Open in IMG/M
3300032462\|Ga0335396_10838336	Not Available	549	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.25%
Host-Associated	Host-Associated	1.75%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.25%
Human	Host-Associated → Human	1.75%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	81.58%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	16.67%
Digestive System	Host-Associated → Human → Digestive System	1.75%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	81.58%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	16.67%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.75%

Habitat	Taxonomy	Distribution
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	81.58%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	16.67%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.75%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	81.58%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	15.79%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.75%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental	Open in IMG/M
3300007519	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03	Environmental	Open in IMG/M
3300007520	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly)	Environmental	Open in IMG/M
3300007522	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01	Environmental	Open in IMG/M
3300007523	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03	Environmental	Open in IMG/M
3300007722	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)	Environmental	Open in IMG/M
3300011188	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563	Environmental	Open in IMG/M
3300012037	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496	Environmental	Open in IMG/M
3300012147	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #564	Environmental	Open in IMG/M
3300012269	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497	Environmental	Open in IMG/M
3300012272	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #562	Environmental	Open in IMG/M
3300017284	Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 4 C, 31 psu salinity and 530 ?mol photons light - Geminigera cryophila CCMP 2564 (MMETSP0799)	Host-Associated	Open in IMG/M
3300017365	Metatranscriptome of marine eukaryotic communities from Ross Sea in marine media K with soil extract, 1 C, 36 psu salinity and 367 ?mol photons light - Geminigera sp. Caron Lab Isolate (MMETSP1102)	Host-Associated	Open in IMG/M
3300022848	Saline water microbial communities from Ace Lake, Antarctica - #866	Environmental	Open in IMG/M
3300027832	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)	Environmental	Open in IMG/M
3300027848	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)	Environmental	Open in IMG/M
3300027976	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)	Environmental	Open in IMG/M
3300027983	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)	Environmental	Open in IMG/M
3300028373	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563 (v2)	Environmental	Open in IMG/M
3300028413	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496 (v2)	Environmental	Open in IMG/M
3300032435	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)	Environmental	Open in IMG/M
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0105050_106565481	3300007516	Freshwater	KLSINFACLPRETGKARALEIDLRRVEANLSTDEEEILSKKYMQKEILHTNRK*
Ga0105055_101151551	3300007519	Freshwater	INFACLPRETGKARALEIDLRRVESNLSTDEEEKVSNKYMQKEILHRNR*
Ga0105055_101400982	3300007519	Freshwater	MFTWDTIMNEKGVFGDVTSDALKLSINFACLPQETGKARALEIGLRHVESNLSTDEEQKLSNEYMQKEIPHRNIK
Ga0105055_102354211	3300007519	Freshwater	MNFACLPRDTGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILHSLRNRK*
Ga0105055_103282971	3300007519	Freshwater	VTSDA*LTLFINFACLPRETGKARTLEIDLRRVEANLSTDEEEK
Ga0105055_103831284	3300007519	Freshwater	RETGKARALEIDLRCVEANLSTDEEENLSNKYMQKEILQK*
Ga0105055_104174293	3300007519	Freshwater	MSDS*LKLSINFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEIL
Ga0105055_104706271	3300007519	Freshwater	ALEIDLRRVEANLSTDEEEKLSNKYMQKKILHRNRK*
Ga0105055_105596611	3300007519	Freshwater	FACLPRQTGKARALEIDLRRVESNLSTDEEENLSNKYMQKEILQK*
Ga0105055_106922111	3300007519	Freshwater	INFACLPRETGKAKALEIDLRRVEASLSTDEEEIL*
Ga0105055_106990632	3300007519	Freshwater	RALEIDLRRVEANLSTDEEERLSNKYMQKEILQK*
Ga0105055_107286292	3300007519	Freshwater	LHRETGKARALEIDLRCVEANLSTDEEENLSNKYMQKDILQK*
Ga0105055_107382552	3300007519	Freshwater	LPRETGKARALEIDLRRVEASLSTDEEEKLSNKYMQKEILHTNRK*
Ga0105055_107734032	3300007519	Freshwater	MKLSINFACLPRETGKARALEIDLRRVEANLSTDDEENLSNKYMQKKILPRNRKF*
Ga0105055_108380851	3300007519	Freshwater	LTINFACPSLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEI
Ga0105055_109264232	3300007519	Freshwater	CLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMRKEILHRNRK*
Ga0105055_111028951	3300007519	Freshwater	TSDSLKLTINFACLPRETGKARALEIDLRRVEANLSTDEEQKLSIKYMQKEILQK
Ga0105055_112071232	3300007519	Freshwater	KLSINFACLPRETGKARALEIDLRRVEANLSTDEEEILSNKYMQKEILHRNRK*
Ga0105055_112328361	3300007519	Freshwater	LKLTINFACLPPETGKARALEIDLRRVEANLSKERLSNKYIQKKILQK*
Ga0105055_112364761	3300007519	Freshwater	NFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKKILQK*
Ga0105055_112699931	3300007519	Freshwater	TGKARALEIDLRRVEANLSTDEEENLSNKYMQKEILHTNRKQCTMIHSRIK*
Ga0105055_113004381	3300007519	Freshwater	TGKARALEIDLRRVEANLSTDEEENLSNKYMQKEILQK*
Ga0105054_100345611	3300007520	Freshwater	VTSDLLKLFINFACLPRETGKARALEIDLRRVEANLSTDEEGKSNKYMQKE
Ga0105054_100520925	3300007520	Freshwater	MDVTSDPLKLFINFACLPRETGKARALEIDLSRVEANFSTDEEENLSNKYMQKKILHRNRK
Ga0105054_102217501	3300007520	Freshwater	KVRALEIDLRRVESNLSTDEEEKLSNKYMQKEILHRNRK*
Ga0105054_104085071	3300007520	Freshwater	LTINFAFLPQETDKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILQK*
Ga0105054_107595712	3300007520	Freshwater	INFACLPRETGKARALEIDLRRVEANLSTDEEENLSNKYVQKEILQK*
Ga0105054_107706261	3300007520	Freshwater	MKLNVNFACLPRETDKARALEIDLRRVETNFSTDEEEKLSNKYMQKEILHTNRK*
Ga0105054_108364831	3300007520	Freshwater	RETGKARALELDLRRVEANLSTDEERKLSNKYMQKDILQK*
Ga0105054_109219841	3300007520	Freshwater	NFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKKILHRNRK*
Ga0105054_110014281	3300007520	Freshwater	SINFACLPRETGKARALEIDLRRVEANLSTDEEENLSNKYMQKEILHRNRK*
Ga0105054_110691561	3300007520	Freshwater	LEIDLRCVEANLSTDKEENLSNKYMQKEILHRNRK*
Ga0105054_110928521	3300007520	Freshwater	LKLTINFACLPRETGKARTLEIDLRRVEANLSTDEEKKILNKYLQKEILQK
Ga0105053_102221942	3300007522	Freshwater	PRETGKVRALEIDLRRVESNLSTDEEEKLSNKYMQKEILHRNRK*
Ga0105053_102748752	3300007522	Freshwater	TINFACLPRETGKARTLEIDLRRVEANLSTDEEERLSNKYMQKEILQK*
Ga0105053_102913634	3300007522	Freshwater	TINFACLPRETDKARALEIDLRCVEANLSTDEEENLSNKYMQKEILQK*
Ga0105053_106721921	3300007522	Freshwater	GVLRNVTSDSWLKLTINFACLPRETGKARALEIDFRRVEANLSTDEEEKLSNKYMQKEILQK*
Ga0105053_107660461	3300007522	Freshwater	NFACLPRETGKARALEIDLRRVEANLSTDEEEKLSDKYMQKEILHRNRI*
Ga0105053_108004171	3300007522	Freshwater	LKLTINFACLPRETGKARALEIDLRRVEANLFTDEEENLSNKYMQKEILQK
Ga0105053_111487061	3300007522	Freshwater	TINFACLPRETGKARALEIDLRRVEANLSTDEEQKLSNTYMQKEILHTNRK*
Ga0105053_111724561	3300007522	Freshwater	ASLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKKILQK*
Ga0105053_111736251	3300007522	Freshwater	LSINFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYVQKAILHRNRK*
Ga0105052_100567981	3300007523	Freshwater	LEIDLRCVEANLSTDEEENLSNKYMQKEILHRNRK*
Ga0105052_101687901	3300007523	Freshwater	KLSINFACLPRETGKARALEIDPRRVEANLSTDEEEELSNEYIQKEIPYRNIK*
Ga0105052_102685472	3300007523	Freshwater	VTEVIYNFACLLRETGKARALEIDSRRVEANLSTDEEEKLSNEYLQKEILHRNRK*
Ga0105052_105397571	3300007523	Freshwater	NFACLPRETGKARALEIDLRRVEANLSTDDEETLSNKYMQKEILHKNRK*
Ga0105052_107454401	3300007523	Freshwater	MNVKTDSLKLTINFACLSRETAKARALEIDLRRIEANLSIDEEERLSYKYMQKEILQK
Ga0105052_108585741	3300007523	Freshwater	RALEIDLRRVEANLSTDEEEKLSNKYMQKEILHTNRT*
Ga0105051_101640872	3300007722	Freshwater	MKLSINFACLPRETGKARALEIDLRRVEANLSTDDEENLSNKYMQKKILHRNRK*
Ga0105051_101926801	3300007722	Freshwater	ACLPRETDKARVLEIDLRRVKVNLSKDEEEKISNIFMQKEILQK*
Ga0105051_103299061	3300007722	Freshwater	SINFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILHRNTKECAMIHSRIKR*
Ga0105051_106648671	3300007722	Freshwater	MNFACLPREAGKDRALEIDLRRVEANLSTDEEEKLSNKYMQKEILQK*
Ga0105051_108127831	3300007722	Freshwater	ETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILQN*
Ga0105051_109093112	3300007722	Freshwater	ALEIDLRRVEANLSTDEEEKLSNKYMQKEILHSLRNRK*
Ga0105051_110249371	3300007722	Freshwater	LSINFACLPRETGKARALEIDLRRVEANLSTDEEEILSKKYMQKEILHTNRK*
Ga0105051_110614452	3300007722	Freshwater	ALEIDLRRVEANLSTDEEEKISNKYMQKEILHTNRK*
Ga0105051_112538151	3300007722	Freshwater	VTSDS*LKLSNNFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQ
Ga0136587_10448951	3300011188	Saline Lake	MNEKGVFGDVTSDA*LKLSINFACLPQETGKARALEIGLRHVESNLSTDEEQKLSNEYMQKEIP
Ga0136587_10863681	3300011188	Saline Lake	VTSGS*LKLSINFACLPRETGKARTLEIDVRRVEANLSTDEEEKLSNKYMQKEIL
Ga0136587_11046371	3300011188	Saline Lake	LSRESVKARALEIDLRCVESNLSTDEEEKLSNEYMQKKILHRNRK*
Ga0136587_11988321	3300011188	Saline Lake	NFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYVQKAILHRNRK*
Ga0136559_10615661	3300012037	Saline Lake	ETGKARALEIDLRRVEANLSTDEEERLSNKYMQKEILQK*
Ga0136559_11319111	3300012037	Saline Lake	NFACLSRESVKARALEIDLRCVESNLSTDEEEKLSNEYMQKKILHRNRK*
Ga0136559_11430581	3300012037	Saline Lake	SINFACLPRETGKARALEIDLRRVEANLSTVEEENLLNEYVFI*
Ga0136559_12045302	3300012037	Saline Lake	GKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILQK*
Ga0136588_10404721	3300012147	Saline Lake	PRETGKARALEIDLRRVEANLSTDEEETLSNKYMQKEILQK*
Ga0136560_10698452	3300012269	Saline Lake	EIDLSRVEANFSTDEEENLSNKYMQKRILHRNRK*
Ga0136586_11437761	3300012272	Saline Lake	RETGKARALEIDLRRVEANLSTDEEEKLSNEYMQKEMLHRNRK*
Ga0136586_11458751	3300012272	Saline Lake	RALEIDLRRVEANLSTDEEEKVSNEYLQKKILHRNRK*
Ga0136586_11640191	3300012272	Saline Lake	PRETGKARALEIDLRRVEANLSTDEEEKLSKKHM*
Ga0186171_10364132	3300017284	Host-Associated	INFACLPRETGKAKALEIDLRHVKANLSTDEEIKISDEYM
Ga0186251_10032811	3300017365	Host-Associated	INFACLPRETGKARALEIDLRRVEANLSTDEEERLSNKYMQKEILQK
Ga0222674_10212271	3300022848	Saline Water	TGKARALEIDLRRVKANLSTDEEEKLSNEYMQKEILQK
Ga0209491_100399264	3300027832	Freshwater	MDVTSDPXLKLFINFACLPRETGKARALEIDLSRVEANFSTDEEENLSNKYMQKKILHRNRK
Ga0209491_101840773	3300027832	Freshwater	LTINFAFLPQETDKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILQK
Ga0209491_101958121	3300027832	Freshwater	LPRETGKARALEIDLRRVEANLFTDEEENLSNKYMQKEILQK
Ga0209491_102575171	3300027832	Freshwater	NFACLPRETGKARALEIDLRRVEANLSTDEEENLSNKYMQKEILHRNRK
Ga0209491_104593301	3300027832	Freshwater	ACLPQETGKARALEIDLLRVEANLSADEEEKLSNKYM
Ga0209491_105026911	3300027832	Freshwater	VCLPRETGKARALEIYLRRVEANLSTDEEERLSNKYMQKDILQK
Ga0209491_105671631	3300027832	Freshwater	DVTSDSXLKLSINFACLPRETGKDRALEIDLMRVESNLSTDEEENLSNKYMQEEILHTNR
Ga0209491_107132761	3300027832	Freshwater	DSXLKLTINFSCLPRETGKATALEIDLRRIEANLSTNEEEKLSNKYMQKEILQK
Ga0209390_100312181	3300027848	Freshwater	MSDSXLKLTINFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEIRQK
Ga0209390_101193241	3300027848	Freshwater	FACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEKLQK
Ga0209390_101244493	3300027848	Freshwater	MNEKGVFGDVTSDAXLKLSINFACLPQETGKARALEIGLRHVESNLSTDEEQKLSNEYMQKEIPHRNIK
Ga0209390_101651811	3300027848	Freshwater	ARALEIDLRCVEANLSTDEEENLSNKYMQKEILQK
Ga0209390_102677962	3300027848	Freshwater	LKLTINFACLPRETGKARALEIDSRRVESNWSTDEEEKLSNTYMQKEILHK
Ga0209390_106037991	3300027848	Freshwater	ARALEIDLRRVEANLSTDEEERLSNKYMQKEILQK
Ga0209390_106912792	3300027848	Freshwater	GVFRDVTSDSCLKLSMNFACLPRDTGKARALEIDLRRVEANLSTDEEEKFIK
Ga0209390_108254272	3300027848	Freshwater	PRETGKARALEIDLRRVEANLSTDEEEKISNKYMQKEILHTNRK
Ga0209702_102499541	3300027976	Freshwater	LKLTINFACLPRETGKARALEIDLRRVEANLSTDEEERLSNKYMQKEILQK
Ga0209284_100876411	3300027983	Freshwater	PRETGKDRELEIDLRCVEANLSTDEEENLSNKYMQKEILHRNRK
Ga0209284_101035962	3300027983	Freshwater	KLSINFACLPRETGKARALEIDPRRVEANLSTDEEEELSNEYIQKEIPYRNIK
Ga0209284_102431411	3300027983	Freshwater	LSINFACLPRETGKARALEIDLRRVEANLSTDEEQKLSNKYMQKEILHRNIK
Ga0209284_104906812	3300027983	Freshwater	VTEVIYNFACLLRETGKARALEIDSRRVEANLSTDEEEKLSNEYLQKEILHRNRK
Ga0209284_105846292	3300027983	Freshwater	MSDSXLKLSINFACLPRETGKARALEIDLRRLEANLSTEEEENLSNRYMQKEILHRIR
Ga0306897_10092992	3300028373	Saline Lake	TSDSXLKLTINFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEILQK
Ga0306897_10661391	3300028373	Saline Lake	CLPRETGKARALEIDLRRVEANLSTDEEENLSDKYMQKEILHRNRK
Ga0306897_10803221	3300028373	Saline Lake	GVFGVVTSDSXLKLSTSFACLPRETGKARALEIDLRRVEANSSTDEEEKISNKYMQKEILQK
Ga0306897_10923361	3300028373	Saline Lake	NFACLPRETGKARALEIDLRRVEANLSTDEEEKLSNKYVQKAILHRNRK
Ga0306870_10837461	3300028413	Saline Lake	KLFINFACLPRETGKARALEIDLSRVEANFSTDEEENLSNKYMQKKILHRNRK
Ga0335398_100813533	3300032435	Freshwater	LPRETGKARALEIDLRRVEANLSTDEEERLSNRYMQKEILQK
Ga0335398_100885612	3300032435	Freshwater	MSDSXLKLSTNFACLPRETGKAKALEIDLRHVKANLSTDEEIKISDEYM
Ga0335398_102739113	3300032435	Freshwater	PRETGKARALEIDLRRVEANLSTDEEEKLSNKYMQKEITQK
Ga0335398_103226501	3300032435	Freshwater	MNEKGVFGDVTSDAXLKLSINFACLPQETGKARALEIGLRHVESNLSTDEEQKLSN
Ga0335398_103971061	3300032435	Freshwater	ALEIDLRRVEANLSTDEEEKLSDKYMQKEILHRNRI
Ga0335398_104035591	3300032435	Freshwater	NFACLPRETGKARTLEIDLRRVEANLSTDEEEKVSNEYMQKEMLHRNRK
Ga0335398_104596501	3300032435	Freshwater	ETGKARALEIDLRRVEANLSTDEEENLSNKYMQKEILHTNRKQCTMIHSRIK
Ga0335398_108246291	3300032435	Freshwater	CLPRETGKARALEIDLRRVEANLSTDEEEKLLNKYMQQEILQK
Ga0335396_101018443	3300032462	Freshwater	ETGKARALEIDLRRVEANLSTDEEEKLSNEYMQKEILQK
Ga0335396_102424734	3300032462	Freshwater	ALEIDLRRVEANLSTDDEENLSNKYMQKKILHRNRK
Ga0335396_103311302	3300032462	Freshwater	ALEIDLRRVEANLSTDKEEELSYKYMQKEILHRNRK
Ga0335396_105637341	3300032462	Freshwater	VTSDSXLKVSINRDFACVSRETXTGKARALEIDVSRVEANLSTDEEEKLSNKYMLKET
Ga0335396_106756822	3300032462	Freshwater	NFACLPRETGKVRTLEIDLRRVEANLSTDEEEKLSNKYVQKEILQK
Ga0335396_108383361	3300032462	Freshwater	MNVKTDSXLKLTINFACLSRETAKARALEIDLRRIEANLSIDEEERLSYKYMQKEILQK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080919

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences