Metagenome / Metatranscriptome Family F081050

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081050
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	56 residues
Representative Sequence	KPPADAPPGATATPAPEDAPSVATGDIGSASDEQLTQAIDVLRGLSLIGRRASG
Number of Associated Samples	86
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	88.60 %
% of genes from short scaffolds (< 2000 bps)	84.21 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.807 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (50.877 % of family members)
Environment Ontology (ENVO)	Unclassified (67.544 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.368 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.59% β-sheet: 0.00% Coil/Unstructured: 63.41%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF02738	MoCoBD_1	14.91
PF00378	ECH_1	6.14
PF09361	Phasin_2	6.14
PF00211	Guanylate_cyc	5.26
PF01979	Amidohydro_1	4.39
PF01575	MaoC_dehydratas	3.51
PF13193	AMP-binding_C	3.51
PF00856	SET	3.51
PF00069	Pkinase	2.63
PF13672	PP2C_2	1.75
PF00732	GMC_oxred_N	1.75
PF00561	Abhydrolase_1	1.75
PF01434	Peptidase_M41	0.88
PF13180	PDZ_2	0.88
PF04392	ABC_sub_bind	0.88
PF02824	TGS	0.88
PF00296	Bac_luciferase	0.88
PF07714	PK_Tyr_Ser-Thr	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	14.04
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	5.26
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.75
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.81 %
Unclassified	root	N/A	27.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.81 %
Unclassified	root	N/A	27.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.81 %
Unclassified	root	N/A	27.19 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.40 %
Unclassified	root	N/A	27.19 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	46.49 %
Unclassified	root	N/A	27.19 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.51 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.19 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	26.32 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.39 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3.51 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.32 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.75 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.32 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.75 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10431308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300004153\|Ga0063455_101435442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300005184\|Ga0066671_10595474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	717	Open in IMG/M
3300005332\|Ga0066388_101447911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300005332\|Ga0066388_102896164	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300005439\|Ga0070711_101547545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300006028\|Ga0070717_10983825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	768	Open in IMG/M
3300006804\|Ga0079221_11719155	Not Available	512	Open in IMG/M
3300007258\|Ga0099793_10193121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	975	Open in IMG/M
3300010048\|Ga0126373_10181470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2026	Open in IMG/M
3300010048\|Ga0126373_10633019	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300010359\|Ga0126376_11650782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	675	Open in IMG/M
3300010361\|Ga0126378_12833366	Not Available	554	Open in IMG/M
3300010376\|Ga0126381_101148418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1122	Open in IMG/M
3300012205\|Ga0137362_11504520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300012923\|Ga0137359_11610076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300012927\|Ga0137416_10873991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300016270\|Ga0182036_10754609	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300016294\|Ga0182041_11558938	Not Available	609	Open in IMG/M
3300016319\|Ga0182033_11216692	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300016319\|Ga0182033_11227889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300016319\|Ga0182033_11652221	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300016341\|Ga0182035_10217685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1522	Open in IMG/M
3300016387\|Ga0182040_11227388	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300016404\|Ga0182037_10506976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1012	Open in IMG/M
3300016404\|Ga0182037_11254918	Not Available	652	Open in IMG/M
3300016422\|Ga0182039_10703515	Not Available	891	Open in IMG/M
3300016422\|Ga0182039_11178167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300016422\|Ga0182039_12273795	Not Available	501	Open in IMG/M
3300016445\|Ga0182038_11319061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300016445\|Ga0182038_12101951	Not Available	512	Open in IMG/M
3300018001\|Ga0187815_10445622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300018090\|Ga0187770_11280394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300021171\|Ga0210405_10324327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1216	Open in IMG/M
3300021403\|Ga0210397_10920007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300021403\|Ga0210397_10998577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300021405\|Ga0210387_11868478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300021420\|Ga0210394_10838156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300021420\|Ga0210394_11785352	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300021478\|Ga0210402_11274451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300021560\|Ga0126371_11258699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	874	Open in IMG/M
3300021560\|Ga0126371_12991606	Not Available	572	Open in IMG/M
3300022531\|Ga0242660_1030059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1088	Open in IMG/M
3300026527\|Ga0209059_1340866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300026529\|Ga0209806_1324180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300027727\|Ga0209328_10082266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	985	Open in IMG/M
3300027812\|Ga0209656_10202038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300031543\|Ga0318516_10049361	All Organisms → cellular organisms → Bacteria → Proteobacteria	2285	Open in IMG/M
3300031545\|Ga0318541_10155791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1255	Open in IMG/M
3300031545\|Ga0318541_10403112	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300031545\|Ga0318541_10416662	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M
3300031546\|Ga0318538_10151601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1225	Open in IMG/M
3300031572\|Ga0318515_10153780	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300031573\|Ga0310915_10081784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2149	Open in IMG/M
3300031573\|Ga0310915_10474184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	889	Open in IMG/M
3300031573\|Ga0310915_10774806	Not Available	675	Open in IMG/M
3300031573\|Ga0310915_11182298	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031668\|Ga0318542_10292683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M
3300031679\|Ga0318561_10156083	Not Available	1226	Open in IMG/M
3300031680\|Ga0318574_10154176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1306	Open in IMG/M
3300031713\|Ga0318496_10481957	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300031736\|Ga0318501_10510394	Not Available	656	Open in IMG/M
3300031747\|Ga0318502_10462669	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300031763\|Ga0318537_10111192	Not Available	1016	Open in IMG/M
3300031768\|Ga0318509_10605480	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300031769\|Ga0318526_10304720	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300031771\|Ga0318546_11028477	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300031781\|Ga0318547_10202139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1187	Open in IMG/M
3300031781\|Ga0318547_10255037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300031795\|Ga0318557_10345730	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300031797\|Ga0318550_10623724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300031805\|Ga0318497_10437649	Not Available	732	Open in IMG/M
3300031831\|Ga0318564_10204076	Not Available	880	Open in IMG/M
3300031833\|Ga0310917_10889353	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031880\|Ga0318544_10003014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4885	Open in IMG/M
3300031890\|Ga0306925_10852109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	941	Open in IMG/M
3300031896\|Ga0318551_10080471	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300031910\|Ga0306923_11400392	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300031910\|Ga0306923_12506352	Not Available	508	Open in IMG/M
3300031912\|Ga0306921_10673792	Not Available	1191	Open in IMG/M
3300031912\|Ga0306921_10851321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1038	Open in IMG/M
3300031912\|Ga0306921_12307367	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300031912\|Ga0306921_12667340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300031941\|Ga0310912_10870228	Not Available	694	Open in IMG/M
3300031945\|Ga0310913_10986529	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031959\|Ga0318530_10312014	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031981\|Ga0318531_10080149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300032001\|Ga0306922_10677551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1087	Open in IMG/M
3300032025\|Ga0318507_10163905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	954	Open in IMG/M
3300032025\|Ga0318507_10373613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300032043\|Ga0318556_10114053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1376	Open in IMG/M
3300032044\|Ga0318558_10325939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	760	Open in IMG/M
3300032055\|Ga0318575_10206512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	987	Open in IMG/M
3300032059\|Ga0318533_10339752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1093	Open in IMG/M
3300032063\|Ga0318504_10499649	Not Available	583	Open in IMG/M
3300032065\|Ga0318513_10280995	All Organisms → cellular organisms → Bacteria → Proteobacteria	808	Open in IMG/M
3300032076\|Ga0306924_10207516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2249	Open in IMG/M
3300032090\|Ga0318518_10460451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300032094\|Ga0318540_10159430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1082	Open in IMG/M
3300032180\|Ga0307471_103594659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300032261\|Ga0306920_103173289	Not Available	616	Open in IMG/M
3300033290\|Ga0318519_10023800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2790	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.25%
Aquatic	Environmental → Aquatic	1.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.25%
Freshwater	Environmental → Aquatic → Freshwater	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.23%
Loam	Environmental → Terrestrial → Soil → Loam	6.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	75.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	50.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.02%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_104313081	3300001867	Forest Soil	DAPAGAMATPAPAEVSSVATQDIGSASDEQLTQAIDVLRGLSLINRRASG*
Ga0063455_1014354421	3300004153	Soil	PAKPPADAPPGATATPVPVEAPSVATGDMGSTSDEQLTQAIDVLRGLALIGKRATG*
Ga0066671_105954742	3300005184	Soil	GALKNPDQATTPPANAPPGATATPAPEEAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGKRAAG*
Ga0066388_1014479112	3300005332	Tropical Forest Soil	KAAKPPADAPAGATATPAPPETPSVATGEMGTPSDEQLTQAIDVLRGLSLIGRRASG*
Ga0066388_1028961641	3300005332	Tropical Forest Soil	PGATPTPAPEEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG*
Ga0070711_1015475451	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KPPADAPPGATATPAPEDAPSVATGDIGSASDEQLTQAIDVLRGLSLIGRRASG*
Ga0070717_109838251	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PPGATATPAPVEAPSVATGDMGSTSDEQLTQAIDVLRGLALIGKRATG*
Ga0079221_117191551	3300006804	Agricultural Soil	KNPDQAAGTPPSEAATTATPSEVPSVATEDIGSASDEQLTQAIDVLRGLSVVGRRAAG*
Ga0099793_101931211	3300007258	Vadose Zone Soil	NPDQAAGQPPSDAATTAAPTEAPSVATEDMGSASDEQLTQAIDVLRGLSVVGPRAAR*
Ga0126373_101814702	3300010048	Tropical Forest Soil	DEPDKAAKPPADAPAGATATPAPPETPSVATGEMGTPSDEQLTQAIDVLRGLSLIGRRASG*
Ga0126373_106330191	3300010048	Tropical Forest Soil	PDQAAAKPPADAPPGATATPAPEETPAVATEDIGSASDEQLIQAMDVLRGLSLISRRAAG
Ga0126376_116507821	3300010359	Tropical Forest Soil	AGATATPAPPEIPSVATGEMGTPSDEQLTQAIDVLRGLSLIGRRASG*
Ga0126378_128333661	3300010361	Tropical Forest Soil	KNPDQAAAKPPADAPPGATATPAPDETPAVASEDIGSASDEQLIQAMDVLRGLSLIGRRAAG*
Ga0126381_1011484182	3300010376	Tropical Forest Soil	ADAPPGATATPAPEQAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGRRASG*
Ga0137362_100401691	3300012205	Vadose Zone Soil	PGATATPAPEDAPSVATGDIGSASDEQLTQAIDVLRGLSLIGRRASG*
Ga0137362_115045201	3300012205	Vadose Zone Soil	GALKNPDQAAGQPPSDAATTAAPTEAPSVATEDMGSASDEQLTQAIDVLRGLSVVGPPAAKR*
Ga0137359_116100761	3300012923	Vadose Zone Soil	AGQPPSDAATTAAPTEAPSVATEDMGSASDAQLTQAIDVLRGLSMVGPRAAR*
Ga0137416_108739911	3300012927	Vadose Zone Soil	ADLPGALKNPDQAAGKPPTDATTTATPTEAPSVATEDMGSASDEQLTQAIDVLRGLSVVGRRAAG*
Ga0126375_109004671	3300012948	Tropical Forest Soil	AGATATPAPPEAPSVATGEMGSPSDEQLTQAIDVLRGLSLIGRRASG*
Ga0182036_107546092	3300016270	Soil	AKPPADAPPGATATPAPDETPAVATEDIGSASDEQLIQAMDVLRGLSLISRRAAG
Ga0182041_115589382	3300016294	Soil	ADLPGALKNPDQPATNDKPPADAPLGATATPAPAEVSSVATQDIGSASDEQLTQAIDVIRGLSLIARRASG
Ga0182033_112166922	3300016319	Soil	ADAPPGATATPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0182033_112278892	3300016319	Soil	FAGSAQKSRSSCHGPGKPPADAPPGAIATPAPEDAPSVATGDIGSASDEQLTQAIDVLRGLSLIGRRASG
Ga0182033_116522212	3300016319	Soil	LKNPDQSTDKPSGDVPPGATATPAPEEAPAVATEDIGSANDEQLIQAVDVLRGLSVFSHRAAG
Ga0182035_102176851	3300016341	Soil	DAPPGATPTPAPEEAPAVATEDMGSANDEQLVQAIDVLRGLSMFNRRAAG
Ga0182040_112273882	3300016387	Soil	KNPDQAADKPPADAPPGATATPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0182037_105069762	3300016404	Soil	GALKNPDQAGDKPPADAPPGATATPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSMFNRRAAG
Ga0182037_112549181	3300016404	Soil	EADLPGALKTPDQAAAKPPADAPPGATATPATEETPAVATEDIGSASDEQLIQAMDVLRGLSLVGRRAAG
Ga0182039_107035151	3300016422	Soil	KPPADAPPGATATPATEETPAVATEDIGSASDEQLIQAMDVLRGLSLVGRRAAG
Ga0182039_111781672	3300016422	Soil	DKPPADAPLGATATPAPAEVSSVATQDIGSASDEQLTQAIDVIRGLSLIARRASG
Ga0182039_122737952	3300016422	Soil	DLPGALKNPDQAVGKLPADAPPGATPTPAPDETPAVATEDIGSASDEQLIQAKDVLRGLSVFSRRAAG
Ga0182038_113190613	3300016445	Soil	GRHEADLPGALKNPDQQGAATSKPPADSPPGATATPGPGDAPSVATGDIGSASDEQLIQAIDVLRGLSLIGRRASG
Ga0182038_121019512	3300016445	Soil	PPGATATPAPEAAPSVATGDIGTANDELLTQAIDVLRGLSLIGHRASG
Ga0187815_104456222	3300018001	Freshwater Sediment	AEPPAGAAATPAPTPAPSVATEDIGSASDEQLTQAVDVLRGLSMFNRRAAG
Ga0187770_112803941	3300018090	Tropical Peatland	EAPAGAAATPAPTPAPSVATEDIGSASDEQLTQAVDVLRGLSMFNRRAAG
Ga0210405_103243271	3300021171	Soil	PPGATATPAPVEAPSVATGDMGSTSDEQLTQAIDVLRGLSLVGKRAAG
Ga0210397_109200072	3300021403	Soil	PPGATATPAPEEAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGKHAAG
Ga0210397_109985772	3300021403	Soil	DAPPGATATPAPEEAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGRRAAG
Ga0210387_118684782	3300021405	Soil	APPGATATPAPEEAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGKRAAG
Ga0210394_108381562	3300021420	Soil	PGATATPAPEEAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGKHAAG
Ga0210394_117853522	3300021420	Soil	GDKPPADAPPGATATPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0210402_112744512	3300021478	Soil	TPPANAPPGATATPAPEEAPSVATGDIGSTSDEQLTQAIDVLRGLSLIGKRAAG
Ga0126371_112586991	3300021560	Tropical Forest Soil	PDKAAKPPADAPAGATATPAPPETPSVATGEMGTPSDEQLTQAIDVLRGLSLIGRRASG
Ga0126371_129916061	3300021560	Tropical Forest Soil	APPGATATPAPEAAPSVATGDIGTASDEQLTQAVDVLRGLSLIGRRVSG
Ga0242660_10300593	3300022531	Soil	AKPPADAPPGATATPAPEEAPSVATGDMGSTSDEQLTQAIDVLRGLSLIGKRAAG
Ga0209059_13408661	3300026527	Soil	ADAPPGATATPAPEEAPSVATGDIGSTSDEQLTQAIDVLRGLALIGKRAAG
Ga0209806_13241801	3300026529	Soil	QAVGQPPSDAATTAAPTEAPSVATEDMGSASDEQLTQAIDVLRGLSVVGPRAAR
Ga0209328_100822661	3300027727	Forest Soil	LAKLAQGEGRREADLPGALKNPDQAAGKPATDAGTTAAPTEVPSVATEDMGSASDEQLTQAIDVLRGLSVVGRRAAG
Ga0209656_102020381	3300027812	Bog Forest Soil	QAEGKPPTEAPAGVSATPAPTAAPSVATEDMGSASDEQLTQAIDVLRGLSMFSRRAAG
Ga0209590_105073072	3300027882	Vadose Zone Soil	PGATATPAPEEAPSVATGEIGSANDEQLTQAIDVLRGLSLIGRRASG
Ga0318516_100493611	3300031543	Soil	PGATPTPPPEEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0318541_101557911	3300031545	Soil	DKPPADAPPGATTTPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0318541_104031122	3300031545	Soil	LKNPDQTTDKPPADIPPGATATPAPEEAPAVATEDIGSASDEQLIQAVDVLRGLSVFSHHAAG
Ga0318541_104166621	3300031545	Soil	PADKPAPAASPGAATTPTPDEAPAVATQDIGSASDEQLIQAVDVLRGLSVFGRRAAG
Ga0318538_101516011	3300031546	Soil	QAAGKLPADAPPGATPTPALNETPAVATEDIGSASDEQLIQAKDVLRGLSVFSRRAAG
Ga0318515_101537801	3300031572	Soil	LKNPDQATDKPPTDIPPGATATPAPDEAPAVATEDIGSASDEQLIQAVDVLRGLSVFSHHAAG
Ga0310915_100817841	3300031573	Soil	DAPLGATATPAPAEVSSVATQDIGSASDEQLTQAIDVIRGLSLIARRASG
Ga0310915_104741843	3300031573	Soil	DSPPGATATPGPGDAPSVATGDIGSASDEQLIQAIDVLRGLSLIGRRASG
Ga0310915_107748061	3300031573	Soil	PPGATATPAPEEAPSVATGDIGSTSDEQLTQAIDVLRGLSLIGKRAAG
Ga0310915_111822982	3300031573	Soil	DLPGALKNPDQAADKPPADAPPGATATPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0318542_102926831	3300031668	Soil	QAFGKLPADAPPGATPTPAPDETPAVATEDIGSASDEQLIQAMDVLRGLSVFSRRAAG
Ga0318561_101560834	3300031679	Soil	KNPDQAAGKLPSDAPPGATPTPAPNETPAVATEDIGSASDEQLIQAKDVLRGLSVFSRRAAG
Ga0318574_101541762	3300031680	Soil	LKNPDQTADKPAPAASPGAAATPSPDEAPAVATQDIGSANDEQLIQAVDVLRGLSVFSRRAAG
Ga0318496_104819571	3300031713	Soil	DKPAPAASPGAAATPSPDEAPAVATQDIGSANDEQLIQAVDVLRGLSVFSRRAAG
Ga0318501_105103942	3300031736	Soil	ADLPGALKNPDQPATNDKPPADAPPGATATPAPTEVSSVATQDIGSASDEQLIQAIDVLRGLSLIARRASG
Ga0306918_101622342	3300031744	Soil	ATPTPAPKEAPAVATEDIGSASDEQLIQAVDVLRGLSMFGRRAAG
Ga0318502_104626691	3300031747	Soil	ADKPAPAASPGAATTPTPDEAPAVATQDIGSASDEQLIQAVDVLRGLSVFGRRAAG
Ga0318537_101111921	3300031763	Soil	PADAPPGATATPPPEEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0318509_106054802	3300031768	Soil	ASPGAAATPSPDEAPAVATQDIGSANDEQLIQAVDVLRGLSVFSRRAAG
Ga0318526_103047202	3300031769	Soil	EKPSDDVPPGATATPAPQEAPAVATEDIGSASDEQLIQAVDVLRGLSLFSHRAAG
Ga0318546_110284771	3300031771	Soil	IPPGATATPAPDEAPAVATEDIGSASDEQLIQAVDVLRGLSVFSHHAAG
Ga0318547_102021393	3300031781	Soil	INCSSPADAPPGATATPAPDESPAVATEDIGSASDEQLIQAMDVLRGLSLIGRRAAG
Ga0318547_102550371	3300031781	Soil	NDKPPADAPLGATATPAPAEVSSVATQDIGSASDEQLTQAIDVIRGLSLIARRASG
Ga0318557_103457301	3300031795	Soil	ADKPSGDVPPGATATPPPNEPRAVATEDIGSASDEQLIQAVDVLRGLSVFSHHAAG
Ga0318550_106237241	3300031797	Soil	GALKNPDQSAEKPSDDVPPGATATPAPQEAPAVATEDIGSASDEQLIQAVDVLRGLSLFSHRAAG
Ga0318523_100043441	3300031798	Soil	AGATATPPPAETLSVATGEMGSPSDEQLTQAIDVLRGLSLIGRRASG
Ga0318497_102398902	3300031805	Soil	PGATATPAPEEAPSVATGDIGSTSDEQLTQAIDVLRGLSLIGKRAAG
Ga0318497_104376492	3300031805	Soil	DKLPADAPPGATATPAPKEAPAVATEDIGSASDEQLVQAEDVLRGLSMVNRRAAG
Ga0318564_102040761	3300031831	Soil	DAPPGATPTPAPEEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0310917_108893532	3300031833	Soil	EADLPGALKNPDQATNKPPTDIPPGATATPAPDEAPAVATEDIGSASDEQLIQAVDVLRGLSVFSHHAAG
Ga0318544_100030145	3300031880	Soil	PDRAPAKAPADAPAGATATPPPTETPSVATGEMGSPSDEQLTQAIDVLRGLSLIGRRASG
Ga0306925_108521092	3300031890	Soil	MRRVADLPGALKNPDQTADKPAPAAAPGAAATPTPDEARAVATRDIGSASDEQLSQAIDLLRGLA
Ga0306925_120735902	3300031890	Soil	GATATPAPEEAPAVATEDIGSANDEQLIQAVDVLRGLSVFSHRAAG
Ga0318551_100804711	3300031896	Soil	GALKNPDQAADKLPADAPPGATATPAPKEAPAVATEDIGSASDEQLVQAEDVLRGLSMVNRRAAG
Ga0306923_114003921	3300031910	Soil	QSTDKPSGDVPPGATATPAPEEAPAVATEDIGSANDEQLIQAVDVLRGLSVFSHRAAG
Ga0306923_125063522	3300031910	Soil	EAPPGATATPAPEAAPSVATGDIGTANDELLTQAIDVLRGLSLIGHRASG
Ga0306921_106737922	3300031912	Soil	APPGATATPATEETPAVATEDIGSASDEQLIQAMDVLRGLSLVGRRAAG
Ga0306921_108513211	3300031912	Soil	AKTDPGKPPVDAPPGATATPTPEEASSVASGDMGSATDEQLTQAIDVLRGLSLISRRASG
Ga0306921_123073671	3300031912	Soil	PGALKNPDQAGGKLPADAPPGATPTPVPEEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0306921_126673402	3300031912	Soil	SEGRHEADLPGALKNPEEPATAGKPAGDAPPGATATPAPAEVVSVATQDIGSASDEQLTQAIDVLRGLSLINRRASG
Ga0310912_108702282	3300031941	Soil	PPGATATPAPDESPAVATEDIGSASDEQLIQAMDVLRGLSLIGRRAAG
Ga0310912_112306253	3300031941	Soil	PPGATVTPGPGDAPSVATGDIGSASDEQLIQAIDVLRGLSLIGRRASG
Ga0310913_109865292	3300031945	Soil	DKPPADAPPGATATPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0318530_103120141	3300031959	Soil	DIPPGATATPAPDEAPAVATEDIGSASDEQLIQAVDVLRGLSVFSHHAAG
Ga0318531_100801493	3300031981	Soil	LKNPDQAGGKLPADAPPGATPTPAPEEAPAVATEDMGSANDEQLVQAIDVLRGLSMFNRRAAG
Ga0306922_106775511	3300032001	Soil	EPATAGKPAGDAPPGATATPAPAEVVSVATQDIGSASDEQLTQAIDVLRGLSLINRRASG
Ga0318507_101639053	3300032025	Soil	ATSKPPADSPPGATVTPGPGDAPSVATGDIGSASDEQLIQAIDVLRGLSLIGRRASG
Ga0318507_103736132	3300032025	Soil	KLARLAQGQMRRVADLPGALKNPDQTADKPAPAAAPGAAATPTPDEARAVATRDIGSASDEQLSQAIDLLRGLA
Ga0318556_101140533	3300032043	Soil	GGKLPADAPPGATPTPAPEEAPAVATEDMGSANDEQLVQAIDVLRGLSMFNRRAAG
Ga0318558_103259391	3300032044	Soil	DLPGALKNPDQTADKPAPAASPGAAATPSPDEAPAVATQDIGSANDEQLIQAVDVLRGLSVFSRRAAG
Ga0318570_105246261	3300032054	Soil	AGATATPPPTETPSVATGEMGSPSDEQLTQAIDVLRGLSLIGRRASG
Ga0318575_100232346	3300032055	Soil	SSGATPTPAPDETPAVATEDIGSASDEQLIQAKDVLRGLSVFSRRAAG
Ga0318575_102065122	3300032055	Soil	GAATSKPPADSPPGATVTPGPGDAPSVATGDIGSASDEQLIQAIDVLRGLSLIGRRASG
Ga0318533_103397521	3300032059	Soil	KPPADAPPGATATPAPVEAPSVAPGDMGSSSDEQLTQAIDVLRGLSLVGKRAAG
Ga0318504_104996492	3300032063	Soil	NPDQPATNDKPPADAPLGATATPAPAEVSSVATQDIGSASDEQLTQAIDVIRGLSLIARRASG
Ga0318513_102809952	3300032065	Soil	KPSGDVPPGATATPPPNEPRAVATEDIGSASDEQLIQAVDVLRGLSVFSRRAAG
Ga0318514_102266162	3300032066	Soil	GATATPPPTETPSVATGEMGSPSDEQLTQAIDVLRGLSLIGRRASG
Ga0306924_102075161	3300032076	Soil	PADAPPGATATPAPTEVSSVATQDIGSASDEQLIQAIDVLRGLSLIARRASG
Ga0306924_107106442	3300032076	Soil	ATATPAPDETPAVATEDIGSASDEQLIQAMDVLRGLSLISRRAAG
Ga0318518_104604511	3300032090	Soil	GKLPADAPPGATPTPAPNETPAVATEDIGSASDEQLIQAMDVLRGLSVFSRRAAG
Ga0318540_101594303	3300032094	Soil	DQASDKPPADAPPGATTTPAPAEAPAVATEDMGSASDEQLVQAIDVLRGLSVFNRRAAG
Ga0307471_1035946591	3300032180	Hardwood Forest Soil	NPDQASGKSPTDAATAAPSEAPSVATGDIGSASDEQLIQAVDVLRGLSVIGRSTAG
Ga0306920_1031732892	3300032261	Soil	ALKNPDQAVAKPPADAPPGATATPATEETPAVATEDIGSASDEQLIQAMDVLRGLSLVGRRAAG
Ga0318519_100238001	3300033290	Soil	PDALKNPDQAAGKLPADAPPGATPTPAPNETPAVATEDIGSASDEQLIQAMDVLRGLSVFSRRAAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081050

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences