NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F081056

Metagenome / Metatranscriptome Family F081056

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F081056
Family Type Metagenome / Metatranscriptome
Number of Sequences 114
Average Sequence Length 73 residues
Representative Sequence KPFTADDLYHAVRDAITRATDLAAIAEAEIVRAHAGLSRLALALEASRTMRVQTLDLVVAARELRRAAAVQD
Number of Associated Samples 102
Number of Associated Scaffolds 114

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.75 %
% of genes near scaffold ends (potentially truncated) 93.86 %
% of genes from short scaffolds (< 2000 bps) 94.74 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (92.982 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(24.561 % of family members)
Environment Ontology (ENVO) Unclassified
(24.561 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(28.070 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 67.00%    β-sheet: 0.00%    Coil/Unstructured: 33.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 114 Family Scaffolds
PF13560HTH_31 5.26
PF00313CSD 4.39
PF00072Response_reg 3.51
PF04120Iron_permease 2.63
PF00440TetR_N 1.75
PF00118Cpn60_TCP1 1.75
PF06724DUF1206 1.75
PF01381HTH_3 1.75
PF00989PAS 0.88
PF11066DUF2867 0.88
PF00343Phosphorylase 0.88
PF09678Caa3_CtaG 0.88
PF00196GerE 0.88
PF17167Glyco_hydro_36 0.88
PF02771Acyl-CoA_dh_N 0.88
PF02630SCO1-SenC 0.88
PF00749tRNA-synt_1c 0.88
PF08448PAS_4 0.88
PF04366Ysc84 0.88
PF13977TetR_C_6 0.88
PF13440Polysacc_synt_3 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 114 Family Scaffolds
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 1.75
COG0008Glutamyl- or glutaminyl-tRNA synthetaseTranslation, ribosomal structure and biogenesis [J] 0.88
COG0058Glucan phosphorylaseCarbohydrate transport and metabolism [G] 0.88
COG1225PeroxiredoxinPosttranslational modification, protein turnover, chaperones [O] 0.88
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.88
COG1999Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC familyPosttranslational modification, protein turnover, chaperones [O] 0.88
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 0.88

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.98 %
UnclassifiedrootN/A7.02 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459021|G14TP7Y02HB1OTAll Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium639Open in IMG/M
2228664021|ICCgaii200_c0841172All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium800Open in IMG/M
3300000363|ICChiseqgaiiFebDRAFT_11087948All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium967Open in IMG/M
3300000956|JGI10216J12902_113493992All Organisms → cellular organisms → Bacteria1039Open in IMG/M
3300004145|Ga0055489_10077867All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300004153|Ga0063455_101189910All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300004480|Ga0062592_101217561All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300005337|Ga0070682_101745989All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300005366|Ga0070659_102065666All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300005441|Ga0070700_100654656All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales830Open in IMG/M
3300005455|Ga0070663_101378981All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300005458|Ga0070681_10548626All Organisms → cellular organisms → Bacteria1070Open in IMG/M
3300005518|Ga0070699_100152483All Organisms → cellular organisms → Bacteria2044Open in IMG/M
3300005535|Ga0070684_100230820All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1690Open in IMG/M
3300005545|Ga0070695_101788321All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium515Open in IMG/M
3300005546|Ga0070696_101727669All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium540Open in IMG/M
3300005564|Ga0070664_100820803All Organisms → cellular organisms → Bacteria → Acidobacteria870Open in IMG/M
3300005578|Ga0068854_100934577All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300005616|Ga0068852_102644299All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300005719|Ga0068861_102464852All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300006804|Ga0079221_10263009All Organisms → cellular organisms → Bacteria → Acidobacteria988Open in IMG/M
3300006847|Ga0075431_102180369All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300006852|Ga0075433_10480054All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1095Open in IMG/M
3300006852|Ga0075433_11557777All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300006918|Ga0079216_11196236All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium610Open in IMG/M
3300009078|Ga0105106_10051275All Organisms → cellular organisms → Bacteria3051Open in IMG/M
3300009078|Ga0105106_10956500All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium609Open in IMG/M
3300009087|Ga0105107_10973558All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium591Open in IMG/M
3300009157|Ga0105092_10307379All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium895Open in IMG/M
3300009166|Ga0105100_10166632All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1309Open in IMG/M
3300009168|Ga0105104_10127348All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1373Open in IMG/M
3300009171|Ga0105101_10205244All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes954Open in IMG/M
3300010371|Ga0134125_12844631Not Available526Open in IMG/M
3300010373|Ga0134128_11157551All Organisms → cellular organisms → Bacteria854Open in IMG/M
3300010373|Ga0134128_11938634All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300010375|Ga0105239_10148423All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia2616Open in IMG/M
3300010396|Ga0134126_11143979All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300010999|Ga0138505_100053976All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium583Open in IMG/M
3300011000|Ga0138513_100034713All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300011119|Ga0105246_10521411All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1013Open in IMG/M
3300011431|Ga0137438_1083435All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium966Open in IMG/M
3300012908|Ga0157286_10050810All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1063Open in IMG/M
3300012911|Ga0157301_10022143All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1415Open in IMG/M
3300012951|Ga0164300_10800400All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales584Open in IMG/M
3300012957|Ga0164303_11249788All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium546Open in IMG/M
3300012958|Ga0164299_10278726All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300012960|Ga0164301_11758199All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium520Open in IMG/M
3300012988|Ga0164306_10493307All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium940Open in IMG/M
3300013096|Ga0157307_1022935All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1042Open in IMG/M
3300013100|Ga0157373_10461354All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300013306|Ga0163162_11596165All Organisms → cellular organisms → Bacteria744Open in IMG/M
3300014325|Ga0163163_11249713All Organisms → cellular organisms → Bacteria805Open in IMG/M
3300015372|Ga0132256_102217655All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium654Open in IMG/M
3300015373|Ga0132257_103536084All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300017997|Ga0184610_1251708All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium587Open in IMG/M
3300018059|Ga0184615_10456274All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium693Open in IMG/M
3300018063|Ga0184637_10187711All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1270Open in IMG/M
3300018063|Ga0184637_10522621All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300018063|Ga0184637_10622979All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300018063|Ga0184637_10675719All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium569Open in IMG/M
3300018068|Ga0184636_1239980All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300018076|Ga0184609_10123844All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300018076|Ga0184609_10215359All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium896Open in IMG/M
3300018076|Ga0184609_10490770All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium560Open in IMG/M
3300018422|Ga0190265_10062497All Organisms → cellular organisms → Bacteria3317Open in IMG/M
3300018422|Ga0190265_11245027All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89862Open in IMG/M
3300018466|Ga0190268_10663108All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium756Open in IMG/M
3300019254|Ga0184641_1335493All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium939Open in IMG/M
3300019259|Ga0184646_1094928Not Available541Open in IMG/M
3300019259|Ga0184646_1601873All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300019361|Ga0173482_10785705All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium503Open in IMG/M
3300021073|Ga0210378_10026003All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium2349Open in IMG/M
3300021090|Ga0210377_10284011All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1020Open in IMG/M
3300022756|Ga0222622_10267523Not Available1165Open in IMG/M
3300025327|Ga0209751_10876601Not Available692Open in IMG/M
3300025796|Ga0210113_1106661All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300025911|Ga0207654_11396634All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300025912|Ga0207707_11393847All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium559Open in IMG/M
3300025959|Ga0210116_1049674All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300026118|Ga0207675_101100995All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300027561|Ga0209887_1099191Not Available590Open in IMG/M
3300027722|Ga0209819_10066361All Organisms → cellular organisms → Bacteria1246Open in IMG/M
3300027731|Ga0209592_1048201All Organisms → cellular organisms → Bacteria1598Open in IMG/M
3300027743|Ga0209593_10198419All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300027979|Ga0209705_10370866All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium717Open in IMG/M
3300028715|Ga0307313_10143361All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium736Open in IMG/M
3300028716|Ga0307311_10202354All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium583Open in IMG/M
3300028771|Ga0307320_10087897All Organisms → cellular organisms → Bacteria1173Open in IMG/M
3300028811|Ga0307292_10494679All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium524Open in IMG/M
3300028819|Ga0307296_10076116All Organisms → cellular organisms → Bacteria1786Open in IMG/M
3300028828|Ga0307312_10726417Not Available658Open in IMG/M
3300028828|Ga0307312_11161318All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium511Open in IMG/M
3300028878|Ga0307278_10015161All Organisms → cellular organisms → Bacteria3579Open in IMG/M
3300030006|Ga0299907_11307136Not Available515Open in IMG/M
3300030336|Ga0247826_10411097All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1002Open in IMG/M
3300030620|Ga0302046_11284572All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium573Open in IMG/M
3300030903|Ga0308206_1009873All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1402Open in IMG/M
3300030990|Ga0308178_1008607All Organisms → cellular organisms → Bacteria1371Open in IMG/M
3300031081|Ga0308185_1034396All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium620Open in IMG/M
(restricted) 3300031197|Ga0255310_10161446All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium618Open in IMG/M
3300031229|Ga0299913_10738981All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium960Open in IMG/M
3300031421|Ga0308194_10058038All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium1011Open in IMG/M
3300031716|Ga0310813_10855843All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium822Open in IMG/M
3300031852|Ga0307410_11495924All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300031903|Ga0307407_11215526All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300031908|Ga0310900_11761989All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium526Open in IMG/M
3300031908|Ga0310900_11916434All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium506Open in IMG/M
3300031913|Ga0310891_10148966All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300032003|Ga0310897_10027770All Organisms → cellular organisms → Bacteria1881Open in IMG/M
3300032075|Ga0310890_11354948All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300033513|Ga0316628_101244165Not Available991Open in IMG/M
3300033550|Ga0247829_11486233All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium559Open in IMG/M
3300033811|Ga0364924_010390All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1719Open in IMG/M
3300034644|Ga0370548_079727All Organisms → cellular organisms → Bacteria633Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil24.56%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment9.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment8.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil6.14%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment4.39%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.51%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.51%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.51%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.63%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.63%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.63%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.75%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil1.75%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.75%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.75%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.75%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.75%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.88%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.88%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.88%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.88%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.88%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.88%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.88%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.88%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.88%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.88%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.88%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.88%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.88%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.88%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.88%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.88%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459021Litter degradation NP4EngineeredOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004145Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300009078Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009087Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009166Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015EnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009171Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010999Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015EnvironmentalOpen in IMG/M
3300011000Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011431Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013096Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2EnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018059Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coexEnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018068Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300019254Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021090Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redoEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025327Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025796Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025959Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027561Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300027722Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027731Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027743Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027979Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028811Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300030620Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111EnvironmentalOpen in IMG/M
3300030903Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030990Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031081Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031229Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38EnvironmentalOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033811Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17EnvironmentalOpen in IMG/M
3300034644Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
4NP_021999702170459021Switchgrass, Maize And Mischanthus LitterMLKPFTADDLYHAVRDAITRTTDLTSVAEADIVRAHAGLSRLAQALEESRTMRVHTLDLVVAARELRRIKDQE
ICCgaii200_084117222228664021SoilDLYHAVRDALTRATDLAAVAEAEIVQAHAGLSKLALALEASRTTRVHTLDLVVAARELRRAAGGQS
ICChiseqgaiiFebDRAFT_1108794823300000363SoilDLYHAVRDALTRATDLAAVAEAEIVQAHAGLSKLALALEASRTTRVHTLDLVVAARELRRAAGGQS*
JGI10216J12902_11349399233300000956SoilPVRVLLKPFTADDLYHAVRDAITRASDLAAVAEAEIVRAHAGLSKLALALEASRTMRVQTLDLVVAARELRRAAVGPS*
Ga0055489_1007786713300004145Natural And Restored WetlandsPDDLYHAVRDAISRVADLTAVAEQEIVRAHAGLSQLARALEASRTARVHTLDLVVAARELRRATAGVV*
Ga0063455_10118991023300004153SoilPDDLPVRVMLKPFSADDLYHAVRDAITRATDLTRIAEADIVQAHAGLSRLAQALAASRTMRVHILDLVVAARELRRARAQE*
Ga0062592_10121756133300004480SoilSDTPVRVVLKPFTADDLYHAVRDAITRSAQLVLDAEKEIVQAHAGLSRLAKALEASRMSRLNTVDLIIAARELRRLNQPK*
Ga0070682_10174598913300005337Corn RhizosphereLFHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLARALEDSRTTRVHTLDLVVAARELRRIREEE*
Ga0070659_10206566623300005366Corn RhizosphereHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLARALEDSRTTRVHTLDLVVAARELRRIREQE*
Ga0070700_10065465613300005441Corn, Switchgrass And Miscanthus RhizospherePRIGPADTPVRVMLKPFSAEDLYHAVRDAITRAADLITVAEHEIVLAHAGLSRLAAALELSRTMRVQTLDLVVAARELRRIQDSS*
Ga0070663_10137898113300005455Corn RhizosphereDDLYHAVRDAITRSTDLTRIAEADIVRAHAGLSRLARALDDSRTTRVNTLDLVVAARELRRIREGA*
Ga0070681_1054862633300005458Corn RhizosphereVRVVLKPFTADDLYHAVRDAITRSAQLVLDAEKEIVQAHAGLSRLAKALEASRMSRLNTVDLIIAARELRRLNQPK*
Ga0070699_10015248353300005518Corn, Switchgrass And Miscanthus RhizospherePFTADDLYHAVRDAITRATDLAAVAEAEIVRAHAGLSQLALALETSRTMRLQTLDLVVAARELRRVAAGSD*
Ga0070684_10023082013300005535Corn RhizosphereADDLYHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLARALEDSRTTRVHTLDLVVAARELRRIREQE*
Ga0070695_10178832123300005545Corn, Switchgrass And Miscanthus RhizosphereLKPFSADDLYHAVRDAISRSEDLSSAAEEEIIKAHEGLSRLARSLEDSRTMRVHTLDLVVAARELRRAQRERR*
Ga0070696_10172766923300005546Corn, Switchgrass And Miscanthus RhizosphereSDTPVRVLLKPFTADDLYHAVRDAISRATDLAAVAEAEIVRAHAGLSKLALALVASRTMRVQTVDLIVAARELRRAVGPS*
Ga0070664_10082080333300005564Corn RhizosphereLYHAVRDAITRSTDLTRIAEADIVRAHAGLSRLAQALNASRTMRVQTLDLVVAARELRRIREHG*
Ga0068854_10093457723300005578Corn RhizospherePVRVMLKPFTADDLYHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLAQALEASRTMRVHILDLVVAARELRRIREQE*
Ga0068852_10264429923300005616Corn RhizosphereDDLYHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLAQALEASRTMRVHILDLVVAARELRRTREQE*
Ga0068861_10246485213300005719Switchgrass RhizosphereTPVRVMLKPFSADDLYHAVRDALTRATDLVAIAEMEILQAHEGLSRLALALEASRAIRAQTVDLVAAARELRGGIAAHN*
Ga0079221_1026300933300006804Agricultural SoilAVPRIGPHDHPVRVMLKPFTADDLYHAVRDAITRSTDLTSIAEDEIVLAHAGLSRLARALEASRTMRVHTLDLVVAARELRRFKEQR*
Ga0075431_10218036923300006847Populus RhizosphereLKPFTAEDLYHAVRDAITRSADLTSLAEEEIVLAHAGLSRLAQALEASRTLRVHTLDLVVAARELRRIKEQG*
Ga0075433_1048005413300006852Populus RhizosphereESSDTPVRVLLKPFTPDDLYHAVRDALSRSADLTAAAELEIVRAHAGLSKLALALEASRTAHVHVLDLVVAARELRRVAPRTD*
Ga0075433_1155777713300006852Populus RhizosphereAWDAPVRVLRKPFTSEDLYHAVRDAITRATDLAAAAELEIIQAHAGLSKLALALEASRTMRVQTLDLVVAARELRRAAAAPR*
Ga0079216_1119623623300006918Agricultural SoilMLKPFSTDDLYHAVCDAITRSTRLMEAAEREIAEAHAGLSRVALALEASRTSRVQMLDLVAAARELRRSRGSK*
Ga0105106_1005127523300009078Freshwater SedimentMLKPFTAESLYHAVRDAITRSADLVASAEREIAQAHAGLSRLATALEASRTMRGETLDLVIAARGLRRIEGRTN*
Ga0105106_1095650013300009078Freshwater SedimentPFTPDDLYHAVRDAISRVAELTAVAEQEIVRAHAGLSQLAMALEASRTARVHTLDLVVAARELRRATARVV*
Ga0105107_1097355823300009087Freshwater SedimentMLKPFTAESLYHAVRDAITRSADLVASAEREIAQAHAGLSRLAKALEASRTMRGETLDLVIAARGLRRIEGRTN*
Ga0105092_1030737913300009157Freshwater SedimentPVRVLLKPFTADDLHHAVRDAITRATDLAAAAEIEIVRAHAGLSKLALALEMSRTMRVQTLDLVVAARELRRAAGG*
Ga0105100_1016663233300009166Freshwater SedimentRDAITRSADLVASAEREIAQAHAGLSRLATALEASRTMRGETLDLVIAARGLRRIEGRTN
Ga0105104_1012734813300009168Freshwater SedimentIESSDTPVRVLLKPFTADDLNHAVRDAISRATDLAALAEAEIVKAHAGLSKLAMALEASRTMRVQTLDLVVAARELRRAAARPDD*
Ga0105101_1020524423300009171Freshwater SedimentMLKPFTAESLYHAVRDAITRSADLVASAEREIAQAHAGLSRLATALEASRTMRGETLDLVIAARGLRRI
Ga0134125_1284463123300010371Terrestrial SoilRSAELVLDAEKEIIQAHAGLSRLAKALEASRTSRLNAVDLIIAARELRRLNQPK*
Ga0134128_1115755123300010373Terrestrial SoilVRVMLKPFTADDLYHAVRDAITRSTDLTSVAEAEIVLAHAGLSRLAQALEASRTTRVHTLDLVVAARELRRIREHG*
Ga0134128_1193863413300010373Terrestrial SoilSADDLYHAVRDAITRTTDLTSVAEADIVRAHAGLSRLAQALEESRTMRVHTLDLVVAARELRRIKDQE*
Ga0105239_1014842313300010375Corn RhizosphereTADDVYHAVRDAITRATDLAAVAEAEIVRAHAGLSKLALALEASRTVRVQTIDLVVAARELRRAAAGPR*
Ga0134126_1114397913300010396Terrestrial SoilPFTADDLYHGVRDAITRTTDLTSVAEADIVRAHAGLSRLAQALEESRTMRVHTLDLVVAARELRRIKDQE*
Ga0138505_10005397613300010999SoilPYIESSDTPVRVLLKPFTSDDLYHAVRDAITRAADLTAVAEAEIVRAHAGLSKLALALEASRTMRVQTKDLVIAARELRRIKRPD*
Ga0138513_10003471323300011000SoilEDLYHAVRDAITRSADLMSLAEEEIVHAHAGLSRLAQALDASRTMRVHTLDLVVAARELRRIKEQG*
Ga0105246_1052141113300011119Miscanthus RhizosphereRDAITRSTDLTSVAEAEIVLAHAGLSRLAQALEASRTTRVHTLDLVVAARELRRIREHG*
Ga0137438_108343523300011431SoilSDIPVRVMLKPFTPEDLYHAVRDAITRSANLIEAAEHEIVQAHSGLSRLAAALEASRTMRVQTLDLVIAARELRRIKGPG*
Ga0157286_1005081013300012908SoilVRDAITRSTDLTNVAEAEIVLAHAGLSRLARALEDSRTTRVHTLDLVVAARELRRIREQE
Ga0157301_1002214333300012911SoilDDLYHAVRDAITRSTDLTSVAEAEIVLAHAGLSRLAQALEASRTTRVHTLDLVVAARELRRIREQE*
Ga0164300_1080040013300012951SoilRRVLLKPFTPDDLYHAVRDALSRSADLTAAAEQEIVRAHAGLSHLASALEASRTSRVHTLDLVVAARELRRAAGQAD*
Ga0164303_1124978823300012957SoilYHAVRDALSRSADLTAAAEQEIVRAHAGLSKLALALEASRTARVHVLDLVVAARELRRVAPRTD*
Ga0164299_1027872633300012958SoilVPHIGPDDIPVRVMLKTFSADDLYHAVRDAITRSTDLTSVAEAEIVLAHAGLSRLAQALEASRTTRVHTLDLVVAARELRRIREQE*
Ga0164301_1175819913300012960SoilTPDDLYHAVRDAITRAADLAALAEHEIVLAHAGLSKLAMTLELSGTMRVRMLDLIVAARNLRRVTSPD*
Ga0164306_1049330713300012988SoilPVRVLLKPFTPDDLYHAVRDALSRSADLTAAAEQEIVRAHAGLSKLALALEASRTARVHVLDLVVAARELRRVAPRTD*
Ga0157307_102293533300013096SoilVRVMLKPFSADDLYHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLARALEDSRTTRVHTLDLVVAARELRRIREEE*
Ga0157373_1046135433300013100Corn RhizosphereYHAVRDALTRSAELIRAAEKEIVDAHAGLSRLARALEASRVSRLNTVDLISAARELRRLNEPT*
Ga0163162_1159616513300013306Switchgrass RhizosphereSADDLYHAVRDAITRSTDLTNVAEAEIVLAHAGLSRLAQALEASRTMRVHILDLVVAARELRRIREQE*
Ga0163163_1124971313300014325Switchgrass RhizosphereKPFSADDLYHAVRDAITRSTDLTSVAEAEIVLAHAGLSRLAQALNSSRTMRVQTLDLVVAARELRRIREQE*
Ga0132256_10221765523300015372Arabidopsis RhizosphereVRVLLKPFSPDDLYHAVRDAISRAADLTAAAEEEIVRAHAGLSRLASALEASRTVRVHVLDLVVAARELRRMAPRTG*
Ga0132257_10353608423300015373Arabidopsis RhizosphereDLYHAVRDAITRTTDLTSVAEADIVQAHAGLSRLAQALAASRTMRVHTLDLVVAARELRRIKDQE*
Ga0184610_125170823300017997Groundwater SedimentDLYHAVRDAITRAADLVEAAEHEIAQAHAGLSRLAAALEASRTTRVQTLDLVIAARELRRIKGPG
Ga0184615_1045627423300018059Groundwater SedimentAEDLYHAVRDAIIRSADLIADAEHEIAQAHAGLSRLAAALEASRTMRGQTLDLVIAARELRRIKGPD
Ga0184637_1018771133300018063Groundwater SedimentRDAITRSANLIEAAEHEIAQAHAGLSRLAAALEASRTMRVQTMDLVIAARELRRIKGPG
Ga0184637_1052262123300018063Groundwater SedimentRVMLKPFTPDDLCHAVRDAMTRAADLAAAAETEIVRAHAGLSKLALALEASRTVRVQTTDLVIAARELGRVAEG
Ga0184637_1062297923300018063Groundwater SedimentVRVLLKPFTPEDLYHAVRDAITRAADLSAVAETEIVRAHAGLSKLALALEASRTMRVQTIDLVIAARELRRATEG
Ga0184637_1067571923300018063Groundwater SedimentRDAITRSANLIEAAEHEIAQAHAGLSRLAAALEASRTMRVQTLDLVIAARELRRIKGPG
Ga0184636_123998013300018068Groundwater SedimentLYHAVRDAITRATDLAAVAETEIVQVHAGLSKLALALEASRTMRIQTLDLVIAARELRRAAEG
Ga0184609_1012384423300018076Groundwater SedimentDDLYHAVRDVITRATDLVAVAEAEIVRAHAGLSKLALALETGRTMRVQTIDLVIAARELRRAAGGQADARSSLPD
Ga0184609_1021535913300018076Groundwater SedimentVRVLLKPFTPDDLYHAVRDAITRATDLSAVAEAEIVRAHAGLSKLAYAIEASRSTRVQTLDLVVAARELRRAAGG
Ga0184609_1049077023300018076Groundwater SedimentTPVRVLLKPFTADHLYHAVRDAITRTTDLVAIAEADIVRAHAGLGKLALALEMSRTTRVHTLDLIVAARELRRAVGG
Ga0190265_1006249743300018422SoilHAVRDAITRSSSLVASAEQEIAQAHAGLSRLAVALEASRTMRGQRLDLVIAARELRVVKN
Ga0190265_1124502713300018422SoilPHVESSDTPVRVMLKPFTPDDLYHAVRDAITRARDLVAAAETEIVRAHAGLSALAQALEASRTNRVQTVDLVIAARELRRAAEG
Ga0190268_1066310813300018466SoilYIESSDTPVRVLLKPFTADDLHHAVRDAITRATDLAAAAEIEIVRAHAGLSKLALALETSRTMRVQTLDLVVAARELRRAAGGP
Ga0184641_133549323300019254Groundwater SedimentGDLYHAVRDAITRAANLTAAAEHEIAEAHAGLSRLAAALEASRTMRVQTLDLVIAARELRRIKRPG
Ga0184646_109492823300019259Groundwater SedimentFTADHLNHAVRDAITRATDLAAIAEAEIVRAHAGLSKLALALETSRTMRVQTLDLVVAARELRRAAGG
Ga0184646_160187313300019259Groundwater SedimentPYIEYSDTPVRVLLKPFTPEDLYHAVRDAITRAADLSAVAETEIVRAHAGLSKLALALEASRTMRVQTVDLVIAARELRRATEG
Ga0173482_1078570523300019361SoilVPYIETSDTPVRVLLKPFTADDLYHAVRDAISRATDLAAVAEAEIVRAHAGLSKLALALEASRTVRVQTIDLVVAARELRRAVGPS
Ga0210378_1002600353300021073Groundwater SedimentSDTPVRVLLKPFTADDLNHALRDAITRATDLAAIAEAEIVRAYAGLSKLALALETSRMMRVQTLDLVVAARELRRAAGG
Ga0210377_1028401123300021090Groundwater SedimentAQTFTAEDLYHAVRDAITRSADLLAAAEHEIAQAHAGLSRLAAALEASRTTRVQTLDLVIAARELRRIKGPD
Ga0222622_1026752323300022756Groundwater SedimentDDLYHAMRDAITRATDLAVVAETEIVQAHSGLSKLASAIKASRTTRVQTLDLVVAARELRRAAAQD
Ga0209751_1087660123300025327SoilPFTPDDLYHAVRDAITRAKDLAAAAETEIVRAHSGLSKLALALEASRTMRVQTVDLVIAARELRRATEG
Ga0210113_110666113300025796Natural And Restored WetlandsFSAADLYQAVRDAITRSARLIEAAENEIAQAHAGLSEAAMVLEASRTARVQMLDLVKVARELRRTKPSD
Ga0207654_1139663413300025911Corn RhizosphereAVRDAITRSTDLTSVAEAEIVLAHAGLSRLAQALEASRTTRVHTLDLVVAARELRRIREQ
Ga0207707_1139384713300025912Corn RhizosphereSPSDTPVRVVLKPFTADDLYHAVRDAITRSAQLVLDAEKEIVQAHAGLSRLAKALEASRMSRLNTVDLIIAARELRRLNQPK
Ga0210116_104967413300025959Natural And Restored WetlandsAVRDAISRVADLTAVAEQEIVRAHAGLSQLARALEASRTARVHTLDLVVAARELRRATAGVV
Ga0207675_10110099523300026118Switchgrass RhizosphereTPVRVMLKPFSADDLYHAVRDALTRATDLVAIAEMEILQAHEGLSRLALALEASRAIRAQTVDLVAAARELRGGIAAHN
Ga0209887_109919113300027561Groundwater SandDAITRATDLAAAAEIEIVRAHAGLSKLAYALEASRTMRVQTLDLVVAARELRRAGARQD
Ga0209819_1006636113300027722Freshwater SedimentPVRVLLKPFTADDLHHAVRDAITRATDLAAAAEIEIVRAHAGLSKLALALEMSRTMRVQTLDLVVAARELRRAAGG
Ga0209592_104820133300027731Freshwater SedimentLKPFTAESLYHAVRDAITRSADLVASAEREIAQAHAGLSRLATALEASRTMRGETLDLVIAARGLRRIEGRTN
Ga0209593_1019841923300027743Freshwater SedimentVLLKPFTADDLNHAVRDAISRATDLAALAEAEIVKAHAGLSTLALALERSRTMRVQTLDLVVAACELRRAAEGAG
Ga0209705_1037086623300027979Freshwater SedimentMLKPFTAESLYHAVRDAITRSADLVASAEREIAQAHAGLSRLATALEASRTMRGETLDLVIAARGLRRIEGRTN
Ga0307313_1014336113300028715SoilMLKPFTAEDLYHAVRDAITRAADLTAIAEDEIVRAHAGLSRLATALEASRSMRGQMQDLVVAAQELRRMEDSA
Ga0307311_1020235413300028716SoilPFSADDLYHAVRDAISRSTDLAAVAEAEIVRAHAGLSKLALALEASRTMRVQTLDLVVAARELRRAAAGPPIDSPGPSSP
Ga0307320_1008789733300028771SoilIGPGDTPVRVMLKPFTAEDLYHAVLDAITRAADLNAIAEDEIVRAHAGLSRLAKALEASRTMRVQRLDLVAAARELRRIKDLD
Ga0307292_1049467913300028811SoilVPRIGPGDTPVRVMVKPFTAEDLFYAVRDAITRAADLNAIAEDEIAPAHAGLSKLAMALEASRTMRGQMLDLVVAARELRRIKDAG
Ga0307296_1007611633300028819SoilDTPVRVLLKPFSADDLYHAVRDAISRSTDLAAVAEAEIVRAHAGLSKLALALEESRTMRVQTLDLVVAARELRRAAAGLS
Ga0307312_1072641713300028828SoilAITRAADLAAIAEAEIVQAHAGLSKLATALQASHTTRVHVLDLVVAARELRRAGAGPS
Ga0307312_1116131813300028828SoilPFRVMLKPFTADDLYLAIRDALSRTLDLATAAEKEIIKAHVGLSKLARALEDSRTVRVHTLDLVVAARELRRIKPERRKKPRTDRQVAPRGK
Ga0307278_1001516143300028878SoilVRDTITRAADLAAVAEAEIVRAHAGLSKLALALEASRTMRVQTIDLVIAARELRRAAVEQSPEPRPSGPQPLD
Ga0299907_1130713613300030006SoilNHAVRDAITRATDLAAVAEAEIVRAHAGLSKLALALETSRTMRVQTLDLVVAARELRRAAGGQADARPSLPD
Ga0247826_1041109743300030336SoilYVESEDIPVRVLLKPFTADDLYHAVRDAITRATDLAAIAEAEIVRAHAGLSRLALALEASRTMRVQTLDLVVAARELRRAAAVQD
Ga0302046_1128457213300030620SoilRVLLKPFTADDLNHAVRDAITRATDLAAVAEAEIVRAHAGLSKLALALERSRTMRVQTIDLVIAARELRRAAARPDD
Ga0308206_100987333300030903SoilTAEDLYHAVRDAITRAADLTAIAEDEIVRAHASLGRLATALEGSRTMRGQMQDLVAAAQELRRMKDSA
Ga0308178_100860743300030990SoilSNVRVMLKPFRADDLYHAVRDTMTRAADLTAIAEYEIAQAHAGLSRLAKALEASRTMRVQRLDLVAAARELRRIKDLD
Ga0308185_103439613300031081SoilHAVRDAITRAADLTAIAEDEIVRAHASLGKLATALEASRSMRGQMQDLDAAAQELRRMQDSAKGREPSHST
(restricted) Ga0255310_1016144613300031197Sandy SoilTPVRVLLKPFTADDLYHAVRDAITRATDLAAVVEAEIVRAHAGLSKLALALEASRTMRVQTLDLVVAARELRRAAVGPS
Ga0299913_1073898113300031229SoilPVRVLLKPFTADGLNHAVRDAITRATDLAAVAEAEIVRAHAGLSKLALALERSRTMRVQTIDLVIAARELRRAAARPDD
Ga0308194_1005803833300031421SoilVRVMLKPFTAEDLYHAVRDAITRAADLTAIAEDEIVRAHASLGRLATALEGSRTMRGQMQDLVAAAQELRRMKDSA
Ga0310813_1085584323300031716SoilVPYIESSDTPVRVLLKPFTADDLYHAVRDAITRATDLAAVAEAEIVRAHAGLSKLALALVASRTMRVQTVDLVVAARELRRAVGPS
Ga0307410_1149592433300031852RhizosphereDDLYHAVRDAITRSTDLTSVAEAEIVRAHTGLSRLAQALEASRTMRVHTLDLVVAARELRRIKEQ
Ga0307407_1121552613300031903RhizosphereGPDDIPVRVMLKPFSADDLSHAVRDAITRATELTRIAEADIVQAHAGLSRLAQALQASRTIRVHAQDLVLAARELRRVKGQA
Ga0310900_1176198923300031908SoilKPFTADDLNHAVRDAITRATDLAAVAEAEIVRAHAGLSKLALALETSRTMRVQTLDLVVAARELRRAAGG
Ga0310900_1191643413300031908SoilTPVRVLLKPFTADDLYHAVRDAISRATDLAAVAEAEIVRAHAGLSKLALALVASRTMRVQTVDLIVAARELRRAAAGPS
Ga0310891_1014896623300031913SoilVRDAITRSTDLTSVAEAEIVLAHTGLSRLARALEDSRTTRVHTLDLVVAARELRRIREQE
Ga0310897_1002777043300032003SoilDAITRSTDLTSVAEAEIVLAHAGLSRLAQALEASRTTRVHTLDLVVAARELRRIREQE
Ga0310890_1135494813300032075SoilDIPVRVMLKPFSADDLYHAVRDAITRSTDLTSVAEAEIVLAHTGLSRLARALEDSRTTRVHTLDLVVAARELRRIREQE
Ga0316628_10124416523300033513SoilSDIPVRVLLKPFTADDLYHAVRDAITRATDLAAIAEAEIVRAHAGLSKLALALEASRTMRVQTLDLVVAARELRRAAGGPS
Ga0247829_1148623313300033550SoilKPFTADDLYHAVRDAITRATDLAAIAEAEIVRAHAGLSRLALALEASRTMRVQTLDLVVAARELRRAAAVQD
Ga0364924_010390_3_2213300033811SedimentKPFTADHLYHAVRDAITRATDLSAVAEAEIVRAHAGLGKLALALEASRTMRVQTLDLVVAARELRRVARGPN
Ga0370548_079727_2_2443300034644SoilFTPDDLYHAVRDAITRAADVTSVVEADIVRAHAGLGRLAQALDASRTMRVHTRDLVVAARELRRIKDQEEADTPGGRATK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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