Metagenome / Metatranscriptome Family F081114

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081114
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	62 residues
Representative Sequence	SQMIAFDSHLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Number of Associated Samples	77
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.91 %
% of genes near scaffold ends (potentially truncated)	87.72 %
% of genes from short scaffolds (< 2000 bps)	85.96 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.404 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.719 % of family members)
Environment Ontology (ENVO)	Unclassified (55.263 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.386 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.61% β-sheet: 0.00% Coil/Unstructured: 48.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00072	Response_reg	2.63
PF00589	Phage_integrase	2.63
PF01381	HTH_3	1.75
PF13493	DUF4118	1.75
PF13683	rve_3	1.75
PF13467	RHH_4	0.88
PF00027	cNMP_binding	0.88
PF10908	DUF2778	0.88
PF12974	Phosphonate-bd	0.88
PF07452	CHRD	0.88
PF00293	NUDIX	0.88
PF02796	HTH_7	0.88
PF12399	BCA_ABC_TP_C	0.88
PF00999	Na_H_Exchanger	0.88
PF13365	Trypsin_2	0.88
PF00005	ABC_tran	0.88
PF15919	HicB_lk_antitox	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.88
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.88
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.88
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.88
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.40 %
Unclassified	root	N/A	38.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.40 %
Unclassified	root	N/A	38.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.40 %
Unclassified	root	N/A	38.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.95 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	12.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.56 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.28 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.28 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.65 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.26 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.75 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.26 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.75 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.65 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.75 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.60 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	12.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9.65 %
Bradyrhizobium sp. 200	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	2.63 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.75 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1029513	Not Available	861	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10093735	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	744	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10101280	Not Available	608	Open in IMG/M
3300004633\|Ga0066395_10222352	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	999	Open in IMG/M
3300005175\|Ga0066673_10625776	Not Available	625	Open in IMG/M
3300005332\|Ga0066388_103177147	Not Available	839	Open in IMG/M
3300005332\|Ga0066388_105573340	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005332\|Ga0066388_108232459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300005332\|Ga0066388_108577923	Not Available	508	Open in IMG/M
3300005363\|Ga0008090_15584198	All Organisms → cellular organisms → Bacteria → Proteobacteria	725	Open in IMG/M
3300005436\|Ga0070713_100921734	Not Available	841	Open in IMG/M
3300005574\|Ga0066694_10469716	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	588	Open in IMG/M
3300005598\|Ga0066706_10214574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1484	Open in IMG/M
3300005764\|Ga0066903_100561713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1961	Open in IMG/M
3300005764\|Ga0066903_102112836	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300005764\|Ga0066903_103310517	Not Available	870	Open in IMG/M
3300005764\|Ga0066903_106357845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	616	Open in IMG/M
3300005764\|Ga0066903_106715118	Not Available	598	Open in IMG/M
3300005764\|Ga0066903_108469948	Not Available	524	Open in IMG/M
3300005764\|Ga0066903_108859928	Not Available	510	Open in IMG/M
3300006046\|Ga0066652_101253603	Not Available	701	Open in IMG/M
3300006796\|Ga0066665_11029765	Not Available	630	Open in IMG/M
3300006800\|Ga0066660_10379072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1159	Open in IMG/M
3300006854\|Ga0075425_100870837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1030	Open in IMG/M
3300007076\|Ga0075435_100572511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	979	Open in IMG/M
3300009792\|Ga0126374_10814301	Not Available	715	Open in IMG/M
3300010046\|Ga0126384_11784115	Not Available	584	Open in IMG/M
3300010047\|Ga0126382_10718822	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	840	Open in IMG/M
3300010047\|Ga0126382_10742234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	829	Open in IMG/M
3300010359\|Ga0126376_12888716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	530	Open in IMG/M
3300010360\|Ga0126372_10414130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	1235	Open in IMG/M
3300010360\|Ga0126372_10458045	Not Available	1184	Open in IMG/M
3300010366\|Ga0126379_13828481	Not Available	504	Open in IMG/M
3300010376\|Ga0126381_102150204	Not Available	803	Open in IMG/M
3300010376\|Ga0126381_103696358	Not Available	599	Open in IMG/M
3300010400\|Ga0134122_10780078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	909	Open in IMG/M
3300012199\|Ga0137383_10544473	Not Available	849	Open in IMG/M
3300012208\|Ga0137376_10765238	Not Available	832	Open in IMG/M
3300012208\|Ga0137376_11248693	Not Available	633	Open in IMG/M
3300012948\|Ga0126375_11482432	Not Available	579	Open in IMG/M
3300012971\|Ga0126369_10226999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1821	Open in IMG/M
3300012971\|Ga0126369_11827700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 200	696	Open in IMG/M
3300016270\|Ga0182036_10212441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1426	Open in IMG/M
3300016294\|Ga0182041_10847643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300016294\|Ga0182041_11691227	Not Available	585	Open in IMG/M
3300016319\|Ga0182033_10498433	Not Available	1046	Open in IMG/M
3300016319\|Ga0182033_11291673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300016319\|Ga0182033_11328569	Not Available	646	Open in IMG/M
3300016341\|Ga0182035_11603491	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	587	Open in IMG/M
3300016387\|Ga0182040_10779629	Not Available	786	Open in IMG/M
3300016387\|Ga0182040_10875374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	744	Open in IMG/M
3300016404\|Ga0182037_10412495	Not Available	1115	Open in IMG/M
3300016404\|Ga0182037_10606134	Not Available	930	Open in IMG/M
3300016445\|Ga0182038_10165635	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1705	Open in IMG/M
3300018482\|Ga0066669_10820504	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300020581\|Ga0210399_11456683	Not Available	533	Open in IMG/M
3300021953\|Ga0213880_10044927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1064	Open in IMG/M
3300021953\|Ga0213880_10252026	Not Available	509	Open in IMG/M
3300025929\|Ga0207664_10078882	All Organisms → cellular organisms → Bacteria → Proteobacteria	2672	Open in IMG/M
3300031545\|Ga0318541_10022057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3063	Open in IMG/M
3300031545\|Ga0318541_10024629	All Organisms → cellular organisms → Bacteria	2922	Open in IMG/M
3300031546\|Ga0318538_10168454	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300031546\|Ga0318538_10657698	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031640\|Ga0318555_10149859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1248	Open in IMG/M
3300031640\|Ga0318555_10292981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300031679\|Ga0318561_10058380	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1950	Open in IMG/M
3300031679\|Ga0318561_10291312	Not Available	892	Open in IMG/M
3300031681\|Ga0318572_10283593	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	977	Open in IMG/M
3300031681\|Ga0318572_10445168	Not Available	771	Open in IMG/M
3300031719\|Ga0306917_10266746	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1315	Open in IMG/M
3300031719\|Ga0306917_10279140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1286	Open in IMG/M
3300031724\|Ga0318500_10379175	Not Available	701	Open in IMG/M
3300031744\|Ga0306918_10427704	Not Available	1033	Open in IMG/M
3300031747\|Ga0318502_10991133	Not Available	512	Open in IMG/M
3300031751\|Ga0318494_10130946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1403	Open in IMG/M
3300031763\|Ga0318537_10021925	All Organisms → cellular organisms → Bacteria	2227	Open in IMG/M
3300031768\|Ga0318509_10056702	Not Available	2014	Open in IMG/M
3300031770\|Ga0318521_10789613	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031779\|Ga0318566_10026688	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2614	Open in IMG/M
3300031780\|Ga0318508_1008989	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	2203	Open in IMG/M
3300031781\|Ga0318547_10276734	Not Available	1016	Open in IMG/M
3300031782\|Ga0318552_10024002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2736	Open in IMG/M
3300031795\|Ga0318557_10055183	All Organisms → cellular organisms → Bacteria → Proteobacteria	1681	Open in IMG/M
3300031805\|Ga0318497_10331533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300031879\|Ga0306919_10622964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	832	Open in IMG/M
3300031896\|Ga0318551_10088226	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1634	Open in IMG/M
3300031896\|Ga0318551_10332158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	858	Open in IMG/M
3300031896\|Ga0318551_10451421	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031910\|Ga0306923_10675469	Not Available	1152	Open in IMG/M
3300031910\|Ga0306923_11662218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	661	Open in IMG/M
3300031912\|Ga0306921_10719043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1146	Open in IMG/M
3300031912\|Ga0306921_12431856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300031941\|Ga0310912_10897022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	682	Open in IMG/M
3300031945\|Ga0310913_10114591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1836	Open in IMG/M
3300031945\|Ga0310913_10152403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1598	Open in IMG/M
3300031945\|Ga0310913_10814036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	658	Open in IMG/M
3300032025\|Ga0318507_10181235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300032035\|Ga0310911_10021101	All Organisms → cellular organisms → Bacteria	3142	Open in IMG/M
3300032035\|Ga0310911_10294626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	933	Open in IMG/M
3300032041\|Ga0318549_10329600	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300032042\|Ga0318545_10381456	Not Available	508	Open in IMG/M
3300032055\|Ga0318575_10029553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2386	Open in IMG/M
3300032055\|Ga0318575_10166504	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300032059\|Ga0318533_10195479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1447	Open in IMG/M
3300032060\|Ga0318505_10057841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1679	Open in IMG/M
3300032060\|Ga0318505_10059274	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1661	Open in IMG/M
3300032066\|Ga0318514_10074250	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1687	Open in IMG/M
3300032076\|Ga0306924_11230205	Not Available	808	Open in IMG/M
3300033289\|Ga0310914_10030995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4264	Open in IMG/M
3300033289\|Ga0310914_10065368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3044	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.37%
Host-Associated	Host-Associated	2.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.37%
Plants	Host-Associated → Plants	2.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.63%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.58%
Loam	Environmental → Terrestrial → Soil → Loam	14.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.75%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.39%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.75%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10295131	3300000580	Forest Soil	GIEASLKPSEPSEQQPKSKSRPWFAAAAIATTRTVLTLFAVGAATGAALLYLGT*
AF_2010_repII_A1DRAFT_100937351	3300000597	Forest Soil	QMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT*
AF_2010_repII_A001DRAFT_101012801	3300000793	Forest Soil	MIAFDRHLNGIEACLKPGEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALL
Ga0066395_102223522	3300004633	Tropical Forest Soil	SQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT*
Ga0066673_106257761	3300005175	Soil	IAYDRQLKGIEASLNSSEPSEQQPDSKSRPWFAAAAMAMARTILIFFAVGAATGAALHYLGT*
Ga0066388_1031771471	3300005332	Tropical Forest Soil	MIAFDRHLNGIEACLKPGEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0066388_1055733401	3300005332	Tropical Forest Soil	MRLLRSQMIAFDKRLKGIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0066388_1082324591	3300005332	Tropical Forest Soil	LRSHMIAFDKRLKGIEAYLKPSEPAEQRPESKSRPWFAAAASATARTVLILFAVGAATGAVLHYLGT*
Ga0066388_1085779231	3300005332	Tropical Forest Soil	FDRQLKGIEAYLEPSEPSEQQLKSESRLLFAAAARATARTVLILCAVTAATGAVLHYLGT
Ga0008090_155841982	3300005363	Tropical Rainforest Soil	MRLLRSQMIAFDRQLKGIEAYLKTREPSEQQPESKSRPWFAAVARATAVLLTVGAATGAVLLYLGT*
Ga0070713_1009217342	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DRQLKGIEAYLKRNEPSESSKSRPSLAAAAHAAARTVLVLFAVGAATGAVLLYLVT*
Ga0066694_104697161	3300005574	Soil	KGIEARLKPSQPSEQDPESKSRPWFAAATIAMARTVLIVFAVGAATSAVLLYLGT*
Ga0066706_102145743	3300005598	Soil	LLRSQMITFDRQLKGIEASLKPSRPSEQQPESKSRPWAAAAAIAMARTVLIFFAVGAATSAVSLYLGP*
Ga0066903_1005617135	3300005764	Tropical Forest Soil	MRLLRSQMIACDRQLKEIEAYLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0066903_1021128363	3300005764	Tropical Forest Soil	SQMIAFDRQLKGIEAYLKPSESSEQQPESKSRPWFAAAASATARTVLFAVGVATGAALLYLGT*
Ga0066903_1023408851	3300005764	Tropical Forest Soil	YLKPREPSEQQPESKSRPWFAAVARATAVLFTVGAATGAVLLYLGT*
Ga0066903_1033105171	3300005764	Tropical Forest Soil	LKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAVLHYLGT*
Ga0066903_1063578452	3300005764	Tropical Forest Soil	MRLLRSQMFAFDRHLRDIEASLKPSEPNEQQPESRSRPWFVAAASATARTVLILFAVGAAISAALLYLGT*
Ga0066903_1067151181	3300005764	Tropical Forest Soil	DMRLLRSQMIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0066903_1084699481	3300005764	Tropical Forest Soil	MIAFDKQLKGIEAYLKPSEPSEQQPESRSRPWFAATTARTVLILFAVGAATGAVLHYLGT
Ga0066903_1088599281	3300005764	Tropical Forest Soil	RLLRSQMIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0066652_1012536031	3300006046	Soil	LRSQMIAFDRQLKGIEACLKPSELSEQQLESKSSLWFTAAAMAMARTVLIFFAVGAATGAALLYLGT*
Ga0066665_110297651	3300006796	Soil	MRFLKSHTIAFDTRLRAIEAHLKPSEPSEQQPDSKFTPWFAAAASATARTVLFAVGAATGTALLYLGT*
Ga0066660_103790721	3300006800	Soil	AFERNLKGIEACLKPSEPSEQQPERKSRPWFAAAVSATARTVSILFAVGVATGAVLHYLGP*
Ga0079221_109420171	3300006804	Agricultural Soil	GIEAYLKAGERSERRRESKSRPWFASAASATARTVLVAVGAVIGATVLIYLAT*
Ga0075425_1008708372	3300006854	Populus Rhizosphere	LRSQMIAFDRQLKGIEAWLKPSEPSEQHLESKSRPWFAAAAMATARTVLIFFAVGAATGAALLYLGT*
Ga0075435_1005725111	3300007076	Populus Rhizosphere	LKGIEACLKPSEPSEQQSESKSRPLFAAAASATARTVSILFAVGVATGAVLHYLGP*
Ga0126374_108143012	3300009792	Tropical Forest Soil	AFFMHLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0126384_117841151	3300010046	Tropical Forest Soil	LRSQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFAAAAIATAKTVLILFAVVAATGATLFYLGT*
Ga0126382_107188221	3300010047	Tropical Forest Soil	MIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT*
Ga0126382_107422341	3300010047	Tropical Forest Soil	QMIAFNRQLHGIEAYLKPREPSEQQPESKSRPWFAAVARATAVLFTVGAATGAVLLYLGT
Ga0126376_128887162	3300010359	Tropical Forest Soil	DMRLLRSQMFAFDRHLRDIEASLKPSEPNEQQPESRSRPWFVAAASATARTVLILFAVGAAISAALLYLGT*
Ga0126372_104141302	3300010360	Tropical Forest Soil	MIAFDKRVTGIEAYLKPSEQQPESKSRPWFAAVASATARTVLILFAVGAATGAALLYLGT
Ga0126372_104580451	3300010360	Tropical Forest Soil	IACDRQLKEIEAYLKPSEQLPESKSRPWFAAAVSATARTVLILFAVGAATGAALLYLGT*
Ga0126379_138284811	3300010366	Tropical Forest Soil	LLRSQMIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0105239_113805311	3300010375	Corn Rhizosphere	IEAWLKPSEPSEQHLESKSRPWFAAAAMATARTVLIFFAVGAATGAALLYLGT*
Ga0126381_1021502041	3300010376	Tropical Forest Soil	IAFDKRLKGMEVYLKPTEPSELQPESKSRRWFAAAASATARTVLILFAVGAATGAVLHYLGT*
Ga0126381_1036963581	3300010376	Tropical Forest Soil	AFDRRLKGIEASLKPSAPTESKLRPWLAATASAAVRTVVTLFGVGAATGAALLYLGT*
Ga0134122_107800782	3300010400	Terrestrial Soil	IAFDRQLKGIEAWLKPSEPSEQHLESKSRPWFAAAAMATARTVLIFFAVGAATGAALLYLGT*
Ga0134123_125866241	3300010403	Terrestrial Soil	GIEAYLKAAERSERRRESKSRPRFAAAASATARTVLVAVGAAIGATVLLYLAT*
Ga0137383_105444731	3300012199	Vadose Zone Soil	IEAYLKRNEPSEQQSSKSPSLATAARAAARTVLVLFAVGAATGAALLYLGT*
Ga0137376_107652381	3300012208	Vadose Zone Soil	RLLRAQMIGLDRQLKGIEAYLKRNEPSEQQSSKSPSLATAARAAARTVLVLFAVGAATGVLLYLVT*
Ga0137376_112486931	3300012208	Vadose Zone Soil	QMIAFDMRLKGIEGSLKPSEPSERQPESKSRPWFAAAASATARTVSILFAVGVATGAVLHYLGP*
Ga0126375_114824321	3300012948	Tropical Forest Soil	RSQMIAFDMRLKGIEAAIKPSEPSEQQPESKSRPWFAAAAIATARTVLVLFAVGAATAAVLHYLVT*
Ga0126369_102269991	3300012971	Tropical Forest Soil	LRSQMIAFDRHLKGIEAYPKPSEPSEQPPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT*
Ga0126369_118277002	3300012971	Tropical Forest Soil	AFDTRLSAIEAYLKPAEPSEQQPDSKSRPWFAAVARATAVLFTVGAATGAALLYLGT*
Ga0182036_102124415	3300016270	Soil	MIAFDKQLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYL
Ga0182041_108476432	3300016294	Soil	LKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0182041_116912271	3300016294	Soil	FDRQLKGIEACLKLSEPSEQQPESKSRQWFAAAAIAMARTVLIFFAVGAATGAALLYLGT
Ga0182033_104984331	3300016319	Soil	MIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAATSATVRTVLILFAVGAATGTALLYLGT
Ga0182033_112916731	3300016319	Soil	KGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0182033_113285691	3300016319	Soil	DRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTALFAIGAAVGVTLTKLYLGT
Ga0182035_116034911	3300016341	Soil	RSQMIAFDSHLKGIEASLKPSEPSEQQPESKSRPGFRAAASATARTVLILFAVGAATSAALFYLGT
Ga0182040_107796291	3300016387	Soil	KGIEACLKPSEPSEQQPESKSRPWFAAAASATAMTVLILFAVGAATGAALLYLGT
Ga0182040_108753741	3300016387	Soil	GIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0182037_104124951	3300016404	Soil	DRQLKGIEAYLKPSEQQPESQSRPWFAAAASAMARTVLILCAVGAATGAVLHYLGT
Ga0182037_106061341	3300016404	Soil	IAFDSRLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0182038_101656353	3300016445	Soil	RSQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVTAASATARTVLILFAVGAATSAALLYLGT
Ga0066669_108205041	3300018482	Grasslands Soil	RSQMITFDRQLKGIEASLKPSGPSEQQPESKSRPWAAAAAIAMARTVLIFFAVGAATSAVLLYLGP
Ga0210399_114566831	3300020581	Soil	MRFLKSHTIAFDTRMRGIEAHLKPSEPSEQQPESKSRRWFAAAASATARTVLILFAVGAATGAVLHYLGT
Ga0213880_100449271	3300021953	Exposed Rock	MCLLRSQMIAFDRHLKGIEACLKPSEPGEHQPESKLRPGFAAAASAAARTVLIVFAVGGS
Ga0213880_102520262	3300021953	Exposed Rock	LDRRLIGLDRQLKEIEAYLKRNGPSEQPSGKLRPSLAAAARAVARTVLVLFAVGAATSAVLLYLVT
Ga0207664_100788821	3300025929	Agricultural Soil	LRSQIIAFNMHLKGIEAYLKAAERSERRREGKSRPRFAAAASATARTVLVAVGAAIGATVLLYLAT
Ga0318541_100220571	3300031545	Soil	LLRSQMIAFDMRLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAVLHYLGT
Ga0318541_100246291	3300031545	Soil	RSQMIALDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAATATARTVLILFAVGAATSAALLYLGT
Ga0318538_101684541	3300031546	Soil	MIAFDKRLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318538_106576982	3300031546	Soil	DRHLKGIEASLKPSEPSEQQPESKSRPWFVAAATARTVLILFAVGAATSAALLYLGT
Ga0318555_101498591	3300031640	Soil	DMLLLRSQMIAFDRRLKELSEPSEQQPESKSRPWFAAAASATARTVLILFAVGASTGAALLYLGT
Ga0318555_102929813	3300031640	Soil	RLKQIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318561_100583801	3300031679	Soil	IEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT
Ga0318561_102913121	3300031679	Soil	MIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAAASATVRTVLILFAVGAATGTALLYLGT
Ga0318572_102835931	3300031681	Soil	MRLLRSQMIAFDSHLKGIEASLKPSEPSEQQPESKSRPGFRAAASATARTVLILFAVGAATSAALFYLGT
Ga0318572_104451682	3300031681	Soil	HLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0306917_102667463	3300031719	Soil	DVRFLRSQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVSAASATARTVLILFAVGAATSAALLYLGT
Ga0306917_102791402	3300031719	Soil	RSQMIAFDNRLKGIEAYLKPSKPSEQQPESKSRPWFAAAASATARTVLILFAVGTATSAALFYLGT
Ga0318500_103791751	3300031724	Soil	LLRSQMIAFDSHLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0306918_104277041	3300031744	Soil	LKGIEASLKPSEPSEQQPENKSRPWFAAAASATARTVLILFAVGAATGAALFYLGT
Ga0318502_109911331	3300031747	Soil	FDMRLKGIEASLKPSEPSEQQPENKSRPWFAAAASATARTVLILFAVGAATGAALFYLGT
Ga0318494_101309463	3300031751	Soil	MIAFDKQLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318537_100219251	3300031763	Soil	RLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318509_100567021	3300031768	Soil	LFVGSGHGIAFDKRLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318521_107896131	3300031770	Soil	ALDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAATARTVLILFAVGAATSAALLYLGT
Ga0318566_100266883	3300031779	Soil	SQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT
Ga0318508_10089891	3300031780	Soil	LRSQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT
Ga0318547_102767341	3300031781	Soil	SQMIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAATSATVRTVLILFAVGAATGTALLYLGT
Ga0318552_100240025	3300031782	Soil	MIAFDRHLKGIEAYLEPSEPSEQQPESKSRPWFLAAASATARTVLILFAVGAATAAALLYLET
Ga0318557_100551834	3300031795	Soil	LRSQMIAFDKQLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318497_103315333	3300031805	Soil	LLRSHMIAFDKRLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0306919_106229642	3300031879	Soil	RSQMIAFDRQLKGIEASLKPSEPSEQQPESKSRLWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318551_100882264	3300031896	Soil	SQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAATATARTVLILFAVGAATSAALLYLGT
Ga0318551_103321583	3300031896	Soil	RLLRSHMIAFDKRLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318551_104514211	3300031896	Soil	IEASLKPSEPSEQQPESKSRPWFVAAATARTVLILFAVGAATSAALLYLGT
Ga0306923_106754691	3300031910	Soil	MRFLRPQMIAFDRHLKGIEAYLKPSEPSEQQPESKSRPWFAAAASTTARTVLILFAAGAATGAVLHYLGT
Ga0306923_116622182	3300031910	Soil	LLRSQMIAFDMHLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAVLHYLGT
Ga0306921_107190431	3300031912	Soil	LKGIEACLKPSEPSEQQPESKSRPLFAAAASAAARTVSILFAVGVATGAVLLYLGT
Ga0306921_124318562	3300031912	Soil	LLRSQMIAFDSHLKGIEAYLKPSEQQAESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0310912_108970221	3300031941	Soil	RSQMIAFDMHLKGIEASLKPSEPSGQQPESKSRPWLAAAASATARTVLILFAVGAATGAALFYLGT
Ga0310913_101145911	3300031945	Soil	DSKVAHHRPFSEFFSSLLRSQMIAFDKRLKGIEAYLKPSEQQPESKSRPWFAAAASATVRTVLILFAVGAATGAALLYLGT
Ga0310913_101524031	3300031945	Soil	FDSHLKGIEASLKPSEPSEQQPESKSRPGFRAAASATARTVLILFAVGAATSAALFYLGT
Ga0310913_108140362	3300031945	Soil	MIAFDGHLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAVLHYLGT
Ga0318507_101812353	3300032025	Soil	LRSHMIAFDKRLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0310911_100211014	3300032035	Soil	MRLLRSHMIAFDKRLKEIEAYLKPNEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0310911_102946261	3300032035	Soil	KGIETYLKPSEPSEQQPESKSRPWFAAAARATARTVFVLFAVGAATGAVLYYLGT
Ga0318549_103296002	3300032041	Soil	SQMIALDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAATARTVLILFAVGAATSAALLYLGT
Ga0318545_103814561	3300032042	Soil	MRFLKLHTIAFDRHLKGIEACLKPSEPSEQQPESKSRPWFAAAASATAMTVLILFAVGAATGAALL
Ga0318575_100295531	3300032055	Soil	LRSQMIAFDRHLKGIEAYLEPSEPSEQQPESKSRPWFLAAASATARTVLILFAVGAATAAALLYLET
Ga0318575_101665041	3300032055	Soil	QLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0318533_101954794	3300032059	Soil	AFDRQLKGIEAYLKPSEQQPESQSRPWFAAAASAMARTVLILCAVGAATGAVLHYLGT
Ga0318505_100578411	3300032060	Soil	GIEASLKPSEPSEQQPESKSRTWFAAAARATARTVFVLFAVGAATGAALLYLGT
Ga0318505_100592741	3300032060	Soil	DRHLKGIEASLKPSEPSEQQPESKSRPWFVAAASATARTVLILFAVGAATSAALLYLGT
Ga0318514_100742503	3300032066	Soil	LRSQMIAFDRHLKGIEASLKPSEPSEQQPESKSRPWFVAAATARTVLILFAVGAATSAALLYLGT
Ga0306924_112302052	3300032076	Soil	SQMIAFDSHLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0310914_100309951	3300033289	Soil	SQMIAFDKQLKGIEASLKPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAALLYLGT
Ga0310914_100653687	3300033289	Soil	QMIAFDMHLKGIEASLKPSEPSEQQPESKSRPWFAAAASATARTVLILFAVGAATGAVLHYLGT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081114

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences