Metagenome / Metatranscriptome Family F081134

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081134
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	93 residues
Representative Sequence	EALRAYLHETARAWRPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSEE
Number of Associated Samples	103
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.26 %
% of genes near scaffold ends (potentially truncated)	93.86 %
% of genes from short scaffolds (< 2000 bps)	92.98 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.965 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.526 % of family members)
Environment Ontology (ENVO)	Unclassified (41.228 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.368 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.39% β-sheet: 0.00% Coil/Unstructured: 46.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13420	Acetyltransf_4	41.23
PF08028	Acyl-CoA_dh_2	4.39
PF00441	Acyl-CoA_dh_1	3.51
PF01980	TrmO	3.51
PF04134	DCC1-like	1.75
PF02739	5_3_exonuc_N	0.88
PF13709	DUF4159	0.88
PF00300	His_Phos_1	0.88
PF00294	PfkB	0.88
PF00582	Usp	0.88
PF00296	Bac_luciferase	0.88
PF13669	Glyoxalase_4	0.88
PF02913	FAD-oxidase_C	0.88
PF04120	Iron_permease	0.88
PF06418	CTP_synth_N	0.88
PF07715	Plug	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	7.89
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	3.51
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	1.75
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.88
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.88
COG0504	CTP synthase (UTP-ammonia lyase)	Nucleotide transport and metabolism [F]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.60 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.60 %
Unclassified	root	N/A	11.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.96 %
Unclassified	root	N/A	11.40 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	2.63 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.88 %
Unclassified	root	N/A	11.40 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	6.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.26 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	4.39 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	2.63 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.75 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	50.00 %
Unclassified	root	N/A	11.40 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.26 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	4.39 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	2.63 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.75 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	49.12 %
Unclassified	root	N/A	11.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	4.39 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.63 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.75 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.75 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	49.12 %
Unclassified	root	N/A	11.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	4.39 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.63 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	1.75 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.88 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
Thermales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales	0.88 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	49.12 %
Unclassified	root	N/A	11.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	4.39 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.63 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1.75 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Thermaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae	0.88 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.88 %
Hypericibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter	0.88 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	49.12 %
Unclassified	root	N/A	11.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.26 %
bacterium SCGC AG-212-C10	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	4.39 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2.63 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1.75 %
Thermus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	0.88 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.88 %
Hypericibacter adhaerens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter adhaerens	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10016071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter adhaerens	633	Open in IMG/M
3300000891\|JGI10214J12806_10241225	Not Available	708	Open in IMG/M
3300000956\|JGI10216J12902_113869180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	617	Open in IMG/M
3300001334\|A2165W6_1502688	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300003995\|Ga0055438_10093455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	841	Open in IMG/M
3300004114\|Ga0062593_102765588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	559	Open in IMG/M
3300004479\|Ga0062595_100771564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	786	Open in IMG/M
3300005187\|Ga0066675_11089099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	597	Open in IMG/M
3300005331\|Ga0070670_101264632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	675	Open in IMG/M
3300005332\|Ga0066388_103762804	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	774	Open in IMG/M
3300005333\|Ga0070677_10708065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300005341\|Ga0070691_10780916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	580	Open in IMG/M
3300005345\|Ga0070692_11098518	Not Available	561	Open in IMG/M
3300005347\|Ga0070668_100164140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1804	Open in IMG/M
3300005353\|Ga0070669_101222371	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	649	Open in IMG/M
3300005353\|Ga0070669_101383625	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005440\|Ga0070705_100288929	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300005440\|Ga0070705_100593441	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300005440\|Ga0070705_100615253	Not Available	842	Open in IMG/M
3300005458\|Ga0070681_10902266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	802	Open in IMG/M
3300005459\|Ga0068867_100123920	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2000	Open in IMG/M
3300005530\|Ga0070679_100995878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	782	Open in IMG/M
3300005532\|Ga0070739_10226269	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	937	Open in IMG/M
3300005536\|Ga0070697_100092810	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M
3300005543\|Ga0070672_100359336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1243	Open in IMG/M
3300005546\|Ga0070696_100841453	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300005546\|Ga0070696_101857111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	521	Open in IMG/M
3300005549\|Ga0070704_101210034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	689	Open in IMG/M
3300005617\|Ga0068859_103140705	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	503	Open in IMG/M
3300005842\|Ga0068858_102214841	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006794\|Ga0066658_10725175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	552	Open in IMG/M
3300006852\|Ga0075433_10535553	Not Available	1030	Open in IMG/M
3300006871\|Ga0075434_100263079	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300006881\|Ga0068865_101829311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	549	Open in IMG/M
3300007076\|Ga0075435_100587738	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300009153\|Ga0105094_10707889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	590	Open in IMG/M
3300009156\|Ga0111538_13626584	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	535	Open in IMG/M
3300009162\|Ga0075423_10576757	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300009167\|Ga0113563_11354486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	834	Open in IMG/M
3300009540\|Ga0073899_10719656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	717	Open in IMG/M
3300009873\|Ga0131077_10522104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1094	Open in IMG/M
3300010043\|Ga0126380_12049660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	525	Open in IMG/M
3300010359\|Ga0126376_11396890	Not Available	725	Open in IMG/M
3300010362\|Ga0126377_11378033	Not Available	778	Open in IMG/M
3300010399\|Ga0134127_11101366	Not Available	858	Open in IMG/M
3300010877\|Ga0126356_11130985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	591	Open in IMG/M
3300011409\|Ga0137323_1074778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	746	Open in IMG/M
3300011417\|Ga0137326_1050341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	906	Open in IMG/M
3300011427\|Ga0137448_1008909	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300011434\|Ga0137464_1103793	Not Available	838	Open in IMG/M
3300012011\|Ga0120152_1198458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	502	Open in IMG/M
3300012046\|Ga0136634_10163100	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	871	Open in IMG/M
3300012173\|Ga0137327_1104103	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	633	Open in IMG/M
3300012228\|Ga0137459_1026849	All Organisms → cellular organisms → Bacteria	1617	Open in IMG/M
3300012900\|Ga0157292_10337959	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SCGC AG-212-C10	552	Open in IMG/M
3300012916\|Ga0157310_10394653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	573	Open in IMG/M
3300012931\|Ga0153915_13165202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	535	Open in IMG/M
3300012958\|Ga0164299_11584477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	515	Open in IMG/M
3300012964\|Ga0153916_10144768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2312	Open in IMG/M
3300013296\|Ga0157374_10254428	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300013297\|Ga0157378_10549879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1160	Open in IMG/M
3300013306\|Ga0163162_10982213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300014031\|Ga0120173_1051054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	596	Open in IMG/M
3300014058\|Ga0120149_1142359	Not Available	658	Open in IMG/M
3300014205\|Ga0172380_11001143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	592	Open in IMG/M
3300015200\|Ga0173480_10300372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	896	Open in IMG/M
3300015372\|Ga0132256_101095448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	911	Open in IMG/M
3300015374\|Ga0132255_100281831	All Organisms → cellular organisms → Bacteria	2386	Open in IMG/M
3300015374\|Ga0132255_102330876	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	817	Open in IMG/M
3300018052\|Ga0184638_1006822	All Organisms → cellular organisms → Bacteria	3768	Open in IMG/M
3300018073\|Ga0184624_10244037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	805	Open in IMG/M
3300018083\|Ga0184628_10077052	All Organisms → cellular organisms → Bacteria	1699	Open in IMG/M
3300018422\|Ga0190265_10128010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2441	Open in IMG/M
3300018432\|Ga0190275_12683914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	575	Open in IMG/M
3300018469\|Ga0190270_12420506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	587	Open in IMG/M
3300018476\|Ga0190274_10068198	All Organisms → cellular organisms → Bacteria → Proteobacteria	2671	Open in IMG/M
3300019361\|Ga0173482_10800471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	500	Open in IMG/M
3300019377\|Ga0190264_10421032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	876	Open in IMG/M
3300021479\|Ga0210410_11774101	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300024998\|Ga0209963_1091355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	562	Open in IMG/M
3300025327\|Ga0209751_11004542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	631	Open in IMG/M
3300025903\|Ga0207680_10404335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	965	Open in IMG/M
3300025923\|Ga0207681_10920091	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	733	Open in IMG/M
3300025923\|Ga0207681_11302509	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	610	Open in IMG/M
3300025925\|Ga0207650_10497915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1018	Open in IMG/M
3300025925\|Ga0207650_11018911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	704	Open in IMG/M
3300025930\|Ga0207701_10558900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	976	Open in IMG/M
3300025933\|Ga0207706_10518424	Not Available	1028	Open in IMG/M
3300025934\|Ga0207686_11483790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	559	Open in IMG/M
3300025935\|Ga0207709_10104184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1882	Open in IMG/M
3300025940\|Ga0207691_10387128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1193	Open in IMG/M
3300025940\|Ga0207691_10686696	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300025945\|Ga0207679_11172578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300025960\|Ga0207651_10940140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	771	Open in IMG/M
3300025981\|Ga0207640_11253389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	661	Open in IMG/M
3300026023\|Ga0207677_10492712	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300026118\|Ga0207675_102600412	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	516	Open in IMG/M
3300027802\|Ga0209476_10199522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	913	Open in IMG/M
3300028380\|Ga0268265_12515877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	521	Open in IMG/M
3300031562\|Ga0310886_10718938	Not Available	623	Open in IMG/M
3300031670\|Ga0307374_10430615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	744	Open in IMG/M
3300031716\|Ga0310813_11214725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	695	Open in IMG/M
3300031731\|Ga0307405_10676119	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031740\|Ga0307468_100674392	Not Available	859	Open in IMG/M
3300031938\|Ga0308175_102695578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	556	Open in IMG/M
3300032002\|Ga0307416_101073029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	909	Open in IMG/M
3300032002\|Ga0307416_103560284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	521	Open in IMG/M
3300032163\|Ga0315281_11261593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	735	Open in IMG/M
3300033417\|Ga0214471_10146159	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300033417\|Ga0214471_11411840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	524	Open in IMG/M
3300033475\|Ga0310811_10808978	Not Available	872	Open in IMG/M
3300033486\|Ga0316624_11534245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	613	Open in IMG/M
3300034819\|Ga0373958_0032918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1026	Open in IMG/M
3300034820\|Ga0373959_0049764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	902	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.77%
Host-Associated	Host-Associated	36.84%
Engineered	Engineered	4.39%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	44.74%
Plants	Host-Associated → Plants	36.84%
Aquatic	Environmental → Aquatic	14.04%
Wastewater	Engineered → Wastewater	2.63%
Solid Waste	Engineered → Solid Waste	0.88%
Bioremediation	Engineered → Bioremediation	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.65%
Sediment	Environmental → Aquatic → Sediment	7.89%
Freshwater	Environmental → Aquatic → Freshwater	5.26%
Activated Sludge	Engineered → Wastewater → Activated Sludge	2.63%
Marine	Environmental → Aquatic → Marine	0.88%
Landfill	Engineered → Solid Waste → Landfill	0.88%
Hydrocarbon	Engineered → Bioremediation → Hydrocarbon	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.58%
Soil	Host-Associated → Plants → Rhizosphere → Soil	16.67%
Loam	Environmental → Terrestrial → Soil → Loam	11.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.63%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Lake	Environmental → Aquatic → Freshwater → Lake	0.88%
Ice	Environmental → Aquatic → Freshwater → Ice	0.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Clay	Environmental → Terrestrial → Soil → Clay	0.88%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	0.88%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.51%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.63%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	2.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.75%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.88%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.88%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	0.88%
Unclassified	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.53%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.39%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.63%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.75%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.88%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.88%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	0.88%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.88%
Wastewater Bioreactor	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor	0.88%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001334	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-65cm)- 6 month illumina	Environmental	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009540	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB5-Ph	Engineered	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011427	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012046	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014031	Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024998	Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof (SPAdes)	Engineered	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027802	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_precipitate (SPAdes)	Engineered	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_100160711	3300000891	Soil	AYLLETADGWRPAAGPLYAARVVRAKTYVTQESTKLCAELFALSGGRHYRRGSPVARLLADSFAGTALRPPLPLALDALVESFPAIAADALDGREALGGR*
JGI10214J12806_102412251	3300000891	Soil	RPAAGPAYAARAVRAKTYVTQESTRLCADLFALSGGRHYRRTSPAARLLAASFAGTALRPPLPLALDAMMEGFGLE*
JGI10216J12902_1138691802	3300000956	Soil	ADAWRPAAGPVYAARVIRAKTYVTQESTRLCADLFALSGGRHYRRTSPVARTLAASFAGTALRPPLPLALDALVESFTLE*
A2165W6_15026882	3300001334	Permafrost	GVSSAASDVYKRQVLRTLATPEPSSPALRLRFSDALMRYEALFAYLLETAAQXXXXFALGGGRHYTRTGRLARTLADSFAGTALRPPLALALDSLVQNFTLGPLAIE*
Ga0055438_100934551	3300003995	Natural And Restored Wetlands	ASAALRVRLSDAQMREESLRAYLHETARAWTPGAGPAYAALALRTKTYVTQEAARLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0062593_1027655882	3300004114	Soil	ARAWRPAAGPAYAARVLRTKTYVTQEATRLCAELFALGGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0062595_1007715642	3300004479	Soil	RLSDAQMREESLRAYLHETARAWTSGAGPAYAALVLRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD*
Ga0066675_110890992	3300005187	Soil	EALMRYEALSAYLQQTAAMWRPAGGRDLALRVLRTKTYVTQESTKLCAELFALSGGRHYTRSGALARALADSFAGTALRPPLALALDTLTEQFQL*
Ga0070670_1012646322	3300005331	Switchgrass Rhizosphere	EAARAYLHETAREWRPAAGPAYAARALRTKTYVTQETTRLCAELFALSGGRHYKRDGRLARALTASFAGTALRPPLPLALDALVQQFGAE*
Ga0066388_1037628041	3300005332	Tropical Forest Soil	GPAQIARVIRVKTYVTQEAARLAADLFALSGGRHYTRTGRMARNLADILAGTALRPPLPLALDQLVEGFSLGALDEKEFLNPAG*
Ga0070677_107080652	3300005333	Miscanthus Rhizosphere	LRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070691_107809161	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	RLSDAQMREESLRAYLHHTARAWTAGAGPAYAALALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070692_110985181	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	RPGAGPSYAARALRTKTYVTQEATRLCAELFALSGGRHYKREGRLARTLAASFAGTALRPPLPLALDAFVQQFGAE*
Ga0070668_1001641403	3300005347	Switchgrass Rhizosphere	YLHETARAWTPGAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD*
Ga0070669_1012223712	3300005353	Switchgrass Rhizosphere	MRYEAMRAYLLETADGWRPAAGPAYAARAVRAKTYVTQESTRLCADLFALSGGRHYRRTSPAARLLAASFAGTALRPPLPLALDAMMEGFG
Ga0070669_1013836252	3300005353	Switchgrass Rhizosphere	EALRAYLHETARAWRPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSEE*
Ga0070705_1002889293	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	YLHETSRAWRPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYKRDDRLARALAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0070705_1005934412	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	RMREEALRAYLHETARAWRPGAGPAYAARTLRTKTYVTQEATRLCADLFALSGGRHYRRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0070705_1006152531	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	REWRPGAGPSYAARALRTKTYVTQEATRLCAELFALSGGRHYKREGRLARTLAASFAGTALRPPLPLALDAFVQQFGAE*
Ga0070681_109022661	3300005458	Corn Rhizosphere	ETAAGFQAAAGPLYAARVLRAKTYVTLEATKLCAELFALGGGRNYRRTSRVARTLADSFAGTSLRPPLALALDNLLNNFTLEGG*
Ga0068867_1001239201	3300005459	Miscanthus Rhizosphere	QTARAWTPGAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD*
Ga0070679_1009958782	3300005530	Corn Rhizosphere	TMRYEAMRAYLLETAGGWHAAAGPAYAARVLRTKTYVTQESTKLAAELFALSGGRHYRRTGALARLLADSFAGTALRPPLALGLETLIAD*
Ga0070739_102262691	3300005532	Surface Soil	LSEALMRYEALRAYLLETAAQWRPAAGTAYAARVLRTKTYVTQEATRLCAELFALGGGRHYTRTDRLAGALADAFAGTALRPPLPLALDTLVQSFSLGDLAE*
Ga0070697_1000928105	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ETARAWRPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYKRDDRLARALAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0070672_1003593361	3300005543	Miscanthus Rhizosphere	MREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0070696_1008414532	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	YEAMRAYLFQTADGWRPAAGPLYAARVVRTKTYVTQESTKLCAELFALSGGRHYRRGSPVARLLADSFAGTALRPPLPLALDALVESFPAIAADALDGREALGGR*
Ga0070696_1018571112	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	TMKYEALRAYLLETAAAWRPSAGAEYAARVLRTKTYVTQESTRLCAELFALGGGRHYRRGGRAARLLADSFAGTALRPPLPLAIDQLSEQFGGLPE*
Ga0070704_1012100341	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	REEALRAYLRETARAWRPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYKRDDRLARALAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0068859_1031407052	3300005617	Switchgrass Rhizosphere	RLRLSEAVMRYESMRGYLHQTASGWRAAAGPAYAGLVLRTKTYVSQESTKLCAELFALGGGRHYRRSSSMAHMLADSFAGTALRPPLSLGLDTLVESFSLGSLASD*
Ga0068858_1022148411	3300005842	Switchgrass Rhizosphere	EAARAYLADTASRHRPAGDAAYRARVLRTKTFVSQESARICADLFALGGGRHYVRGGRLAGAMADVFAGTALRPPLALALDSLVESFAIAED*
Ga0066658_107251751	3300006794	Soil	RMREEAARAYLHETARAWRPGAGPAYAARVLRTKTYVTQEATRLCAELFALSGGRHYTRSGRLARTLAASFAGTALRPPLPLALETMVQQFDG*
Ga0075433_105355531	3300006852	Populus Rhizosphere	LHETAREWRPGAGPSYAARALRTKTYVTQEATRLCAELFALSGGRHYKREGRLARTLAASFAGTALRPPLPLALDAFVQQFGAE*
Ga0075434_1002630793	3300006871	Populus Rhizosphere	QMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0068865_1018293111	3300006881	Miscanthus Rhizosphere	LIREEALRAYLHETARAWRPGAGPVYAARMLRTKTYLTQEATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSD*
Ga0075435_1005877383	3300007076	Populus Rhizosphere	TARAWRPGAGPAYAARVLRTKTYVTQESTRLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSAE*
Ga0105094_107078891	3300009153	Freshwater Sediment	EAMRAYLIETAAGFHAGAGPGYAARVLRAKTYVTQEATKLCAELFALGGGRNYRRSNRIARTLADSFAGTALRPPLALALDMLVENFSLGAAEE*
Ga0111538_136265842	3300009156	Populus Rhizosphere	LHHTARAWTAGAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0075423_105767573	3300009162	Populus Rhizosphere	RMREEALRAYLHETARAWRPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYKRDDRLARALAASFAGTALRPPLPLALDTLVQQFSSE*
Ga0113563_113544862	3300009167	Freshwater Wetlands	LNDAFMRYEALRAYLLETAEAWRPAAGPEYAARVLRMKTHVTQEATKLCAELFAFGGGRHYRRGGRVAGLLADSFAGTALRPPLPLGLETLAENFSIGGGWEHA*
Ga0073899_107196561	3300009540	Activated Sludge	AVMRYEAIEAYLQTTAESWTPGAEAAYAGRVLRTKTYVTMEAAKLSAELFSLSGGRHYRRNDYVAGLLADAFAGTALRPPLALALETMVEQFEDVVLCA*
Ga0131077_105221041	3300009873	Wastewater	EAQMRYESLHAYVQETARDWRLAAGPAYGARVLRMKTFVSQESTKLCAELFALSGGRSYRRAGRAARLLADSFAGTALRPPLALGLETLSEQFSLEPAGG*
Ga0126380_120496602	3300010043	Tropical Forest Soil	LSDAQMREESLRAYLHETARAWTPAAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0126376_113968901	3300010359	Tropical Forest Soil	AYLHETARAWTAGAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0126377_113780332	3300010362	Tropical Forest Soil	RAYLHETARAWTPGAGPAYAARVLRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD*
Ga0134127_111013661	3300010399	Terrestrial Soil	HETARAWKPGAGPTYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLASSFAGTALRPPLSLALDTLVQQFSEE*
Ga0126356_111309852	3300010877	Boreal Forest Soil	MREEALRGYLHETARGWRAGAGPAYASRMLRTKTYVTQEATKLCAELFALSGGRHYTRGGRLARTLAASFAGTALRPPLALALDTLVQQFSAD*
Ga0137323_10747782	3300011409	Soil	EEALRAYLHETARGWKPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLAVDTLMQQFSEE*
Ga0137326_10503411	3300011417	Soil	RAYLHETARGWKPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE*
Ga0137448_10089091	3300011427	Soil	ETARGWKPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE*
Ga0137464_11037931	3300011434	Soil	ARGWKPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLVQQFSEE*
Ga0120152_11984581	3300012011	Permafrost	PALRLRFSDALMRYEALFAYLLETAAQWRPAAGPEYAARVLRTKTYVTQEATKLAAELFALGGGRHYTRTGRLARTLADSFAGTALRPPLALALDSLVQNFTLGPLAIE*
Ga0136634_101631001	3300012046	Polar Desert Sand	MRYEAARAYLLETARGWRPGSSPAWRARVLRTKTYVAQDMTRLAAELFALSGGRHYRRSSAVARLLAASFAGTALRPPLPLALDMLTEAFALDPEPRLDDW*
Ga0137327_11041032	3300012173	Soil	EEALRAYLHETARGWKPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE*
Ga0137459_10268491	3300012228	Soil	EALRAYLHETARGWKPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALASSFAGTALRPPLPLALDTLMQQFSEE*
Ga0157292_103379593	3300012900	Soil	YEAMRAYLLETADGWRPAAGPAYAARAVRAKTYVTQESTRLCADLFALSGGRHYRRTSPAARLLAASFAGTALRPPLPLALDAMMEGFGLE*
Ga0157310_103946532	3300012916	Soil	REEALRAYLHETARGWRPGAGPAYAARVLRMKTYVTQEATKLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLALALDTLVQQFSGE*
Ga0153915_131652021	3300012931	Freshwater Wetlands	LRLRYSEALMRYESLRAYLLETSAGWRASAGPDYAARALRTKTFVTQESTKLCAELFALGGGRHYRRSGAVARTLADSFAGTALRPPLTLALDTLVENFSLGDLGD*
Ga0164299_115844772	3300012958	Soil	RVRLSDAQMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0153916_101447681	3300012964	Freshwater Wetlands	HEALRAYLLETAAAWRPAGGPEYGARVLRMKSYVTQESTKLCAELFALGGGRHYRRSGRIAGLVADSFAGTALRPPLPLALETMAENFSTGGDWEPA*
Ga0157374_102544281	3300013296	Miscanthus Rhizosphere	RSANPALSDAMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQDATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0157378_105498791	3300013297	Miscanthus Rhizosphere	EESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD*
Ga0163162_109822132	3300013306	Switchgrass Rhizosphere	ESLRAYLHETARAWTPGAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD*
Ga0120173_10510541	3300014031	Permafrost	TAAQWRPAAGPGYAARVLRTKTYVTQEATRLCAELFGLGGGRHYPRPGRLARALADAFAGTALRPPLALALDMLVEQFTLAHLASDESSVAL*
Ga0120149_11423592	3300014058	Permafrost	AYLLETAAQWRPAAGPEYAARVLRTKTYVTQEATKLAAELFALGGGRHYTRTGRLARTLADSFAGTALRPPLALALDSLIQNFTLGPLAIE*
Ga0172380_110011432	3300014205	Landfill Leachate	YLFETATLWRPAAGPAYAARVLRTKTYVSAEATRLCAELFALSGGRQYRRDGVASRFLTDAFAGTALRPPLSLSLELLVDGFGKE*
Ga0173480_103003722	3300015200	Soil	MRYEALRAYLTETAAAFRVAGSPDYAARVLRTKTYVSQEATKLCAELFALGGGRHYRRNGPVARTLADSFAGTALRPPLSLALENLLENFSLGGAE*
Ga0132256_1010954482	3300015372	Arabidopsis Rhizosphere	PASAALRVRLSDAQMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0132255_1002818311	3300015374	Arabidopsis Rhizosphere	SLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD*
Ga0132255_1023308761	3300015374	Arabidopsis Rhizosphere	HETARAWTPGAGPAYASLALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD*
Ga0184638_10068225	3300018052	Groundwater Sediment	VRCADAQMREEALRAYLHETARAWRPGAGPAYAARTLRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLASSFAGTALRPPLPLALDTLMQQFSEE
Ga0184624_102440371	3300018073	Groundwater Sediment	EALRAYLHETARGWRPGAGPAYAARVLRMKTYVTQEATRLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLALALDTLVQQFSGE
Ga0184628_100770523	3300018083	Groundwater Sediment	RLSDAQMREEALRAYLHDTARQWRPGAGPAYAARALRTKTHVTQEATRLCAELFALSGGRHYTRDGRLARTLASSFAGTALRPPLPLALDTLLQQFSAE
Ga0190265_101280101	3300018422	Soil	QTAEGFRPAAGAAYAARVLRTKTYVTQEATKLCAELFALGGGRNYRRTSLVARMLADSFAGTSLRPPLMLALDRLVESFSLGDAE
Ga0190275_126839141	3300018432	Soil	FRPRAGAAYAARVLRTKTYVTQEATKLCAELFSLGGGRNYRRTSLVARMLADSFAGTALRPPLALALDRLIENFSLGDAESHLTVNGSS
Ga0190270_124205062	3300018469	Soil	LLQTAEGFRPGAGAAYAGRVLRTKTYVTQEATKLCAELFALGGGRNYRRTSLVARMLADSFAGTSLRPPLTLALDRLIENFSLGDAE
Ga0190274_100681981	3300018476	Soil	MRYEAMRAYLLQTAEGFRARAGAAYAARVLRTKTYVTQEATKLCAELFALGGGRNYRRTSLVARMLADSFAGTSLRPPLTLALDRLVENFSLGDAE
Ga0173482_108004711	3300019361	Soil	DGYEALRAYLTETAAAFRVAGGPDYAARVLRTKTYVSQEATKLCAELFALGGGRHYRRNGPVARTLADSFAGTALRPPLSLALENLLENFSLGGAE
Ga0190264_104210322	3300019377	Soil	DAQMREEALRAYLHETARTWRPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYKRDGRLARTLASSFAGTALRPPLPLALDTLVQQFSSE
Ga0210410_117741011	3300021479	Soil	RAYLHETARAWSPATCPSPAWRARVVRAKTYVTQEAIRLAAELFALGGGRHYRRAGRLARFLADSFAGTALRPPLPLALESLAADFAFDLAAD
Ga0209963_10913552	3300024998	Wastewater Bioreactor	MRLESLAAYLNETASGWCAAAGPGYAARVLRTKTYVTQESTKLCAELFALGGGRHYRRNSRIAMLMADAFAGTALRPPLSLALETLAETFELE
Ga0209751_110045421	3300025327	Soil	RFSDALMRIEALSAYLDETAARWRPAAGAAYAQRVLRTKTYVSQESTKLAAELFALSGGRHYSRKSAVARTLADSFAGTALRPPLALALDLLVGQFESALPAALDDMSRTSDG
Ga0207680_104043351	3300025903	Switchgrass Rhizosphere	RELSTPAPASAALRVRLSDAQMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTTD
Ga0207681_109200912	3300025923	Switchgrass Rhizosphere	LRHVRLRAQHARAWRPGAGPGYAARMLRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSE
Ga0207681_113025091	3300025923	Switchgrass Rhizosphere	EALRAYLHETARAWRPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSEE
Ga0207650_104979153	3300025925	Switchgrass Rhizosphere	LSDAQMREESLRAYLHETARAWTPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207650_110189112	3300025925	Switchgrass Rhizosphere	LRFVDALIREEALRAYLHETARAWRPGAGPAYAARMLRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARALAASFAGTALRPPLPLALDSLVQQFSSD
Ga0207701_105589001	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RFADAQMREEALRAYLHETARAWRPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSEE
Ga0207706_105184241	3300025933	Corn Rhizosphere	YLHETARAWTPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207686_114837902	3300025934	Miscanthus Rhizosphere	MREEALRAYLHETARAWRPGAGPEYAALALRTKTYVTQEATRLCAELFALSGGRHYRRDGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE
Ga0207709_101041843	3300025935	Miscanthus Rhizosphere	RELSTPVPASAALRVRLSDAQMREESLRAYLHQTARAWTPGAGPAYAALALRTKTYVTQEATGLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD
Ga0207691_103871283	3300025940	Miscanthus Rhizosphere	LRVRLSDAQMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207691_106866962	3300025940	Miscanthus Rhizosphere	FRAGAGPAYAARALRTKTYVSQEAVKLCAELFALSGGRNYRRTSAVARALADSFAGTSLRPPLALALDGLVESFSLGEAAAP
Ga0207679_111725781	3300025945	Corn Rhizosphere	ALRVRLSDAQMREESLRAYLHHTARAWTAGAGPAYAALALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0207651_109401402	3300025960	Switchgrass Rhizosphere	ARMREEAARAYLQETAREWRPGAGPSYAARALRTKTYVTQETTRLCAELFALSGGRHYKRDGRLARALTASFAGTALRPPLPLALDALVQQFGAE
Ga0207640_112533891	3300025981	Corn Rhizosphere	RLSDAQMREESLRAYLHQTARAWTPGAGPAYAALALRTKTYVTQEATGLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLVQQFTAD
Ga0207677_104927123	3300026023	Miscanthus Rhizosphere	REWRPAAGPAYAARALRTKTYVTQETTRLCAELFALSGGRHYKRDGRLARALTASFAGTALRPPLPLALDALVQQFGAE
Ga0207675_1026004122	3300026118	Switchgrass Rhizosphere	TARAWTPGAGPAYAARALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0209476_101995221	3300027802	Activated Sludge	ALRAYLLETAADWRPAAGPEYAARVLRTKTYVTQEATALCASLFALGGGRHYRRTDPLARLLADSFAGTALRPPLPLALETMLDQFAPLDAES
Ga0268265_125158771	3300028380	Switchgrass Rhizosphere	MREEAARAYLHETAREWRPAAGPAYAARALRTKTYVTQETTRLCAELFALSGGRHYKRDGRLARALTASFAGTALRPP
Ga0310886_107189381	3300031562	Soil	YLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0307374_104306152	3300031670	Soil	MRFEALEAYLHQTTLGWRAAAGAAYAARILRMKTYVTQESTKLCAELFALSGGRHYRRTGRLARLLADSFAGTALRPPLPLALDALSEAFEP
Ga0310813_112147251	3300031716	Soil	DARMTHEALSAYLHETAAAWRPAAGRAYAARVLRTKTYVTSEATRLCAELFALGGGRVYNRGGFVARLLADSFAGTALRPPLALALDSLVEQFGA
Ga0307405_106761192	3300031731	Rhizosphere	AAGFRPAAGPRYAARVLRAKTYVTQEAAKLCAELFALGGGRNYRRTSRVARTLADSFAGTALRPPLALALDSLVENFTLGSAEE
Ga0307468_1006743921	3300031740	Hardwood Forest Soil	YLHETARAWRPGAGPTYAARSLRTKTYVTQEATRLCAELFALSGGRHYKRDDRLARALAASFAGTALRPPLPLALDTLVQQFSSE
Ga0308175_1026955781	3300031938	Soil	RAWRPAAGPAYAARVLRAKTYVSQEATKLCAELFALGGGRHYTRTGRLARALAASFAGTALRPPLPLALDTLVQQFGDADPGWAAPAPLS
Ga0307416_1010730291	3300032002	Rhizosphere	ALRSYLHETAREWRPAAGPAYAARVLRTKTYVTQEAAKLCAELYALGGGRHYTRTGGLTRALAASFAGTALRPPLPLALDTLVQQFSDAEPEWSTRRETRPSSGAG
Ga0307416_1035602842	3300032002	Rhizosphere	ALMREEALRSYLHETAREWRPAAGSAYGARVLRTKTYVTQEATRLCAELYALGGGRHYTRTGRLARALSASFAGTALRPPLPLALDTLVQQCGEIDDGWSTAGA
Ga0315281_112615932	3300032163	Sediment	YLHETAAAWRPAAGPAYAARVLRMKTYVTSESTKLCAELFALSGGRHYRRNGLAARLLADSFAGTALRPPLSLALDALVDAFDQE
Ga0214471_101461591	3300033417	Soil	MRYESLAAYLQETASMWRPGADKAYAMRVIRTKTYVTQESTRLCAELFALSGGRHYTRTGRLARLLADSFAGTALRPPLPLALDMLVTQFGDSDA
Ga0214471_114118401	3300033417	Soil	AQMREEALRAYLHETARAWRPGAGPAYAARALRTKTYVTQEATKLCAELFALSGGRHYKRTGRLARTLAASFAGTALRPPLPLALDTLVQQFSSE
Ga0310811_108089781	3300033475	Soil	YLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCAELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0316624_115342452	3300033486	Soil	ETAEAWRPGAGAAYAARVLRTKTHVTTEATRLCAELFALAGGRHYRRSSDVARALADSFAGTALRPPLPPALEMLIENSTLDDHWR
Ga0373958_0032918_752_1024	3300034819	Rhizosphere Soil	ESLRAYLHETARAWTPGAAPAYASLALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD
Ga0373959_0049764_3_323	3300034820	Rhizosphere Soil	ASAALRVRLSDAQMREESLRAYLHETARAWTPGAGPAYASLALRTKTYVTQEATRLCGELFALSGGRHYTRNGRLARTLAAAFAGTALRPPLPLALETLLQQFTAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081134

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences