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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F081300 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 114 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLSMRDHDGRYG |
| Number of Associated Samples | 97 |
| Number of Associated Scaffolds | 114 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 37.17 % |
| % of genes near scaffold ends (potentially truncated) | 98.25 % |
| % of genes from short scaffolds (< 2000 bps) | 93.86 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.66 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (69.298 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (13.158 % of family members) |
| Environment Ontology (ENVO) | Unclassified (32.456 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (48.246 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 18.31% β-sheet: 15.49% Coil/Unstructured: 66.20% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.66 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 114 Family Scaffolds |
|---|---|---|
| PF00106 | adh_short | 77.19 |
| PF00534 | Glycos_transf_1 | 8.77 |
| PF01435 | Peptidase_M48 | 5.26 |
| PF04185 | Phosphoesterase | 1.75 |
| PF13439 | Glyco_transf_4 | 1.75 |
| PF00551 | Formyl_trans_N | 0.88 |
| PF00004 | AAA | 0.88 |
| PF02416 | TatA_B_E | 0.88 |
| PF03571 | Peptidase_M49 | 0.88 |
| PF16491 | Peptidase_M48_N | 0.88 |
| COG ID | Name | Functional Category | % Frequency in 114 Family Scaffolds |
|---|---|---|---|
| COG3511 | Phospholipase C | Cell wall/membrane/envelope biogenesis [M] | 1.75 |
| COG1826 | Twin-arginine protein secretion pathway components TatA and TatB | Intracellular trafficking, secretion, and vesicular transport [U] | 0.88 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 69.30 % |
| All Organisms | root | All Organisms | 30.70 % |
| Visualization |
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| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 13.16% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 10.53% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 6.14% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.26% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 4.39% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 4.39% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 4.39% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.51% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 3.51% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 3.51% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 2.63% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 2.63% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.63% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 2.63% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.63% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.75% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.75% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 1.75% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.75% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 1.75% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 1.75% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.75% |
| Rice Paddy Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil | 1.75% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 1.75% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.75% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.88% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.88% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.88% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.88% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 0.88% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.88% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.88% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.88% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.88% |
| Sandy Soil | Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil | 0.88% |
| Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere | 0.88% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.88% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459007 | Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm | Environmental | Open in IMG/M |
| 3300000953 | Soil microbial communities from Great Prairies - Kansas Corn soil | Environmental | Open in IMG/M |
| 3300001686 | Grasslands soil microbial communities from Hopland, California, USA | Environmental | Open in IMG/M |
| 3300005187 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Host-Associated | Open in IMG/M |
| 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
| 3300005526 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 | Environmental | Open in IMG/M |
| 3300005529 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 | Environmental | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
| 3300005561 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 | Environmental | Open in IMG/M |
| 3300005566 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 | Environmental | Open in IMG/M |
| 3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
| 3300005574 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 | Environmental | Open in IMG/M |
| 3300005901 | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_201 | Environmental | Open in IMG/M |
| 3300005902 | Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102 | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006032 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 | Environmental | Open in IMG/M |
| 3300006034 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105 | Environmental | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
| 3300006604 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006755 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter | Environmental | Open in IMG/M |
| 3300006794 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010321 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015 | Environmental | Open in IMG/M |
| 3300010325 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG | Environmental | Open in IMG/M |
| 3300010326 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010364 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015 | Environmental | Open in IMG/M |
| 3300010371 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300012008 | Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M | Environmental | Open in IMG/M |
| 3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012212 | Combined assembly of Hopland grassland soil | Host-Associated | Open in IMG/M |
| 3300012285 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012356 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG | Environmental | Open in IMG/M |
| 3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
| 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017961 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG | Environmental | Open in IMG/M |
| 3300018040 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 | Environmental | Open in IMG/M |
| 3300018064 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG | Environmental | Open in IMG/M |
| 3300018482 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118 | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300020140 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300024187 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13 | Environmental | Open in IMG/M |
| 3300024275 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15 | Environmental | Open in IMG/M |
| 3300025472 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes) | Environmental | Open in IMG/M |
| 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026301 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026334 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes) | Environmental | Open in IMG/M |
| 3300026530 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes) | Environmental | Open in IMG/M |
| 3300027775 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes) | Environmental | Open in IMG/M |
| 3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027903 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Host-Associated | Open in IMG/M |
| 3300028654 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG | Host-Associated | Open in IMG/M |
| 3300028824 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197 | Environmental | Open in IMG/M |
| 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Host-Associated | Open in IMG/M |
| 3300031248 (restricted) | Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5 | Environmental | Open in IMG/M |
| 3300031564 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031795 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19 | Environmental | Open in IMG/M |
| 3300031831 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 | Environmental | Open in IMG/M |
| 3300031938 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1 | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032782 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| L02_05710980 | 2170459007 | Grass Soil | MTPWRVVIVTRILPVALGFHAALSEAGHEPVGLLTIRDTDGRYGGF |
| L02_06337960 | 2170459007 | Grass Soil | MTPWRVVIVTRILPVALGFHAALSEAGHEPVGLLTIRDTDGRYGGFD |
| JGI11615J12901_100993561 | 3300000953 | Soil | VSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDGRYGNLP |
| C688J18823_100287721 | 3300001686 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDADGRYGNLPDTGELVLSAAPGLDVL |
| C688J18823_105102281 | 3300001686 | Soil | MSLRVGIVTRIPPVLAAFDAVVRATGHEPVAFLTMRDVDGRYGPPADT |
| C688J18823_107593452 | 3300001686 | Soil | MSSWRVVIVTRVFPVAVGFHEALRELGHEPVALLTVRDTTGRY |
| C688J18823_108212162 | 3300001686 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDGRYGNLPD |
| Ga0066675_101940474 | 3300005187 | Soil | MRLRVVIVTRIPPVLAAFDAVVRGMGHEPVAFLTMRNVDGRYGPP |
| Ga0066388_1009880011 | 3300005332 | Tropical Forest Soil | MSWRVVIATRVAPVLAGFDAVIREAGHEPVALMTVRDSDDRYGNLPET |
| Ga0070660_1014782852 | 3300005339 | Corn Rhizosphere | MRVVLVTRILPVALGFHAAVRESGYDAVALLTIRDPERRYGS |
| Ga0070661_1002709013 | 3300005344 | Corn Rhizosphere | MSWRIVIVTRIAPVLAGFDAVVRDAGHEPVALMSMRDVDGRYGSLPDIGELVTSAAPELD |
| Ga0070671_1012136842 | 3300005355 | Switchgrass Rhizosphere | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALMSMRDQDGRYGNLPDIGELVMS |
| Ga0070671_1021255881 | 3300005355 | Switchgrass Rhizosphere | VSAWRVVIVTRVFPVAVGFDATLRELGHEPVALLTVRDTSGR |
| Ga0070659_1011693412 | 3300005366 | Corn Rhizosphere | MSWRVVIVTRISPVLAGFDAVVRAAGHEPVALMSMRDHDGRYGGLPDIGELVLSAAP |
| Ga0070709_101608361 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | VTWRVVIVTRIAPVLAGFDAVVREAGHEPVALLTKRNVDARYGPAAEMT |
| Ga0070698_1019205541 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSLRVVVVTRIPPVLAGFDAVIREAGHEPVAFLTMRNVDGRYGPSEQTGELVMGA |
| Ga0073909_100525054 | 3300005526 | Surface Soil | MSWRVVIVTRIAPVLAGFDAVVRAVGREPVALMSMRDHDGRYGNLPDVGELVMSAAP |
| Ga0073909_100827954 | 3300005526 | Surface Soil | MSWRVVIVTMIPPVLIGFDAVLREAGHQPVALLTMRGR |
| Ga0070741_101808391 | 3300005529 | Surface Soil | MSLRVVIVTRIPPVLAGFDAVVRDAGHEPIAFLTMRNVDGRYGPI |
| Ga0070697_1006270291 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MVPPAPWRVVIATRVLPIALGFSAALREAGHEPVGLLTVRDASGRYGGF |
| Ga0070733_107485281 | 3300005541 | Surface Soil | VRVVVVTRIPPVLAGFDAVAREAGHEVVAFLTMRDTDGRYGPQALTDQLVMGAAPDL |
| Ga0066699_106675642 | 3300005561 | Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTI |
| Ga0066693_103638192 | 3300005566 | Soil | MSMRVVIVTRIPQVLAGFDAVVRELGHEVVALLTNRIVLGGGGPG |
| Ga0066705_102817743 | 3300005569 | Soil | VRVVVTTRILPVALGFDAVVREAGHEPVALLTIRDTDSR |
| Ga0066694_100793221 | 3300005574 | Soil | MSLRVVIVTRISPVLAGFDAVVRDAGHEPVALMSMRDHDGRYGNL |
| Ga0075274_10166042 | 3300005901 | Rice Paddy Soil | MSWRIVIVTRIAPVLAGFDAVVRDAGHEPVALLSMRDSDGRYGALPGTGELVTSAAPELD |
| Ga0075273_101135461 | 3300005902 | Rice Paddy Soil | MSWRIVIVTRIAPVLAGFDAVVRDAGHEPVALLSMRDSDGRYGALPGTG |
| Ga0070717_115784182 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VSLRVVIVTRVPPVLVGFDGVIREAGHEVAGFLTMRN |
| Ga0066696_107227422 | 3300006032 | Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLTMRNVDGRYGPPADTGDLVLAA |
| Ga0066656_104490681 | 3300006034 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDADGRYGNLP |
| Ga0066652_1005907002 | 3300006046 | Soil | MTPKPPWRVVIATRVLPVALGFHATLREAGHEPVALLTIRDADGRYGG |
| Ga0075026_1003289392 | 3300006057 | Watersheds | MPASPPWRVAIVTRILPVALGFYAAVREAGHEPVALLSIRDTDGRYGLM |
| Ga0074060_118513292 | 3300006604 | Soil | MSFRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDNDGRYGDLPETGELVMSAA |
| Ga0074060_118515502 | 3300006604 | Soil | MSWRVVIVTRIAPVLAGFDSVVRAAGHEPIALLTMRDSDGRYGDLPETGELVMSAA |
| Ga0079222_110220811 | 3300006755 | Agricultural Soil | MSLRVVICTRIPPVLAGFHAVVQEAGHETVALLTNRV |
| Ga0066658_103902112 | 3300006794 | Soil | MSWRVVIVTRILPVLAGFDAVVRAAGHEPVALLTMRDADGRYGNLPDTGELVMGA |
| Ga0066659_103168842 | 3300006797 | Soil | MAPPAPWRVVIATRVLPVVLGFSAALREAGHEPVALLTVRDPSGRYGSFDL |
| Ga0066659_113479051 | 3300006797 | Soil | MSLRVVIVTRIPPVLAGFDGVIREAGHEVVGFLTMRNVDGRYGPPSLTDELVMGAADDLDVLLPA |
| Ga0066659_118485752 | 3300006797 | Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTIRDTK |
| Ga0079219_111280822 | 3300006954 | Agricultural Soil | MTTRWRVVIVTRIPPVALGLHAAAKGAGHEPVALLTVRDPSRR |
| Ga0075423_129597491 | 3300009162 | Populus Rhizosphere | MRLRVVIVTRIPQVLAGFDAVIREAGHEPVAFLTMRNVDVRYGPLEQTNEL |
| Ga0105237_118941262 | 3300009545 | Corn Rhizosphere | MSLRVVIVTRIPPVLQAFDAVVRDTGNEPVAFLTMR |
| Ga0105238_122835211 | 3300009551 | Corn Rhizosphere | MSWRVVIATRIPPVLVGFDAVIREAGHEPVGFLTTRNLDGR |
| Ga0127503_100479291 | 3300010154 | Soil | MTPWRVVIVTRILPVALGFHAALREAGHEPVALLTIRD |
| Ga0134067_101916562 | 3300010321 | Grasslands Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTIR |
| Ga0134067_103274401 | 3300010321 | Grasslands Soil | MRLRVVIVTRIPPVLAAFDAVVRGTGHEPVTFLTMRNVDGRYGPPADTGDLVM |
| Ga0134064_102672372 | 3300010325 | Grasslands Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLSMRDHDGRYG |
| Ga0134065_100462331 | 3300010326 | Grasslands Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLTMRNVDGRYGPPADTGDLVLAAADELDVLLPA |
| Ga0126378_117759842 | 3300010361 | Tropical Forest Soil | MSLRVAIVTRIAPVLAGFDPVVRAAGHEPVALLSMRD |
| Ga0134066_102652771 | 3300010364 | Grasslands Soil | MSLRVVIVTCISPVLAAFDAVVRGTVHEPVAFLTMRNVDGRYGPPADT |
| Ga0134125_119615121 | 3300010371 | Terrestrial Soil | MSLRVVIVTRIPPVFQAFDAVVRDTGNQPVAFLTMRNVDGRYGPPGTPATS* |
| Ga0134125_127408031 | 3300010371 | Terrestrial Soil | MNLRVVIATRIAPVLAGFEAVVREAGHEPVALLTLRNA |
| Ga0105239_116760222 | 3300010375 | Corn Rhizosphere | VSWRVVIVTRILPIALGFDAAIREAGHESVALLTIRDPEKRYGPWDLAGLV |
| Ga0134127_115999431 | 3300010399 | Terrestrial Soil | MSWRVVIVTRISPVLAGFDAVVRAAGHEPVALMSMRDHDGRYGSLPDIGELVLSAAPELD |
| Ga0120174_10316316 | 3300012008 | Permafrost | MSWRVVIVTRIPPVIAGFDGVVREAGHEPVALLTMRN |
| Ga0137379_104464453 | 3300012209 | Vadose Zone Soil | MSWRVVIVTRIPPVLLGFDAVIRDAGHESVAFLTMRNADGRYGPVSHTG |
| Ga0150985_1032398412 | 3300012212 | Avena Fatua Rhizosphere | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDGRYGNLP |
| Ga0137370_103708351 | 3300012285 | Vadose Zone Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLTMRNVDGRYGPPADTGDLVLAAAD |
| Ga0137366_106824452 | 3300012354 | Vadose Zone Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHDPVALLSMRDHDGRYGNLPDIGELVM |
| Ga0137371_100148931 | 3300012356 | Vadose Zone Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHAPVALLSMRD |
| Ga0137371_105297281 | 3300012356 | Vadose Zone Soil | VIATRILPVALGFHATLREAGHEPVALLTIRDTDGRYGGFELGPMLQ |
| Ga0137371_112723161 | 3300012356 | Vadose Zone Soil | MTPAAPWRAVIVTRILPVVLGLYGALREAGHEPVALLTVRDNDGR |
| Ga0137385_106423912 | 3300012359 | Vadose Zone Soil | VIVTRILPVVLGLYGALREAGHEPVALLTVRDAEG |
| Ga0137398_105706771 | 3300012683 | Vadose Zone Soil | MAPPAPWRVVIATRVLPIALGFSAALREAGHEPVALL |
| Ga0137404_115574941 | 3300012929 | Vadose Zone Soil | VQPSPPWRVAIVTRILPVALGFYAVAREAGHEPVALLSIRDSDGR |
| Ga0126369_112243152 | 3300012971 | Tropical Forest Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALLTMRDHDG |
| Ga0164308_118971162 | 3300012985 | Soil | MSWRVVIVTRVSPVLAGFDAVVRAAGHEPVALLSMRDHDGRYGSLPDIGEL |
| Ga0164304_112063391 | 3300012986 | Soil | MSLRVAIVTRIPPVLQAFDAVVRDTGNEPVAFLTMRNVDGRYG |
| Ga0157373_106289602 | 3300013100 | Corn Rhizosphere | MTPAAPWRAVIVTRILPVVLGLYGTLREAGHEPVALLT |
| Ga0157369_114755152 | 3300013105 | Corn Rhizosphere | MRVVLVTRILPVALGFHAAVRESGYDAVALLTIRDPERRYGSWDLAAL |
| Ga0137403_114739731 | 3300015264 | Vadose Zone Soil | VIVTRILPVALGFDAAVREAGHHPVALLSIRDSDRRYGPMGG |
| Ga0187778_113098562 | 3300017961 | Tropical Peatland | MSWRVVIVTRIPPVLEGFDAVVRAAGHEPVALLTMRNVDGRYG |
| Ga0187862_108600812 | 3300018040 | Peatland | VIPQPPWRVVIVTRIPPVVAGFLAAVREVGHEPVALLTIRDVGARYGTEFTTD |
| Ga0187773_111967471 | 3300018064 | Tropical Peatland | VTAVPKPPWRVAIVTRLLPVLLAFDSALREAGHDPVALV |
| Ga0066669_101787853 | 3300018482 | Grasslands Soil | LSWRVVIVTRVLPVALGFYEAVREAGHEPVALLTI |
| Ga0173482_104184632 | 3300019361 | Soil | MSWRVVIVTRIAPVLAGFDAVVRAAGHEPVALMSMR |
| Ga0206354_101689441 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | MSWRVVIVTRIAPVLAGFDGVVRAAGHEPVALMSMRDQDGRYGNLPDIG |
| Ga0206354_108601201 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VSWRVVIVTRILPVALGFDAAIREAGHESVALLTIRDAEKRYGPW |
| Ga0179590_11579392 | 3300020140 | Vadose Zone Soil | MSAPSWRVVIVTRILPVALGFHAALREAGHTPVGLLTIRDTDGRYGG |
| Ga0247672_10283792 | 3300024187 | Soil | MSLRVVIVTRIPPVLQAFDAVVRDTGNEPVAFLTMRNVDGRYGPPSDTGDVVMT |
| Ga0247674_10466251 | 3300024275 | Soil | MSLRVVIVTRIPPVLQGFDAVVRDTGNEPVAFLTMRNVDGRYGPPADTGDVVMT |
| Ga0208692_10407283 | 3300025472 | Peatland | VIPQPPWRVVIVTRIPPVVAGFLAAVREVGHEPVALLTIRDVGARYGTE |
| Ga0207680_110573531 | 3300025903 | Switchgrass Rhizosphere | MSWRVVIVTRIAPVLAGFDGVVRAAGHEPVALMSMRDQDGRYGNLPDVGELVMSAA |
| Ga0207652_117642162 | 3300025921 | Corn Rhizosphere | MSWRVVIVTRISPVLAGFDAVVRAAGHEPVALMSMRDHDGRYGSLPDIGELVLSAAPDLDVL |
| Ga0207646_101887591 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | VQLSPPWRVAIVTRILPVALGFYAVVREAGHEPVALLSIR |
| Ga0207690_100297061 | 3300025932 | Corn Rhizosphere | MIPPAPWRVVIVTRILPVVLGMHGALREAGHEPVALLTVRDNDGRY |
| Ga0207665_113152982 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MTWRVVIVTRIAPVLAGFDAVVRDVGHEPVALMSMRDHD |
| Ga0207639_109825911 | 3300026041 | Corn Rhizosphere | MTPAAPWRVVIVTRILPVVLGFYGALREAGHEPVALLTVRDNDGRYGGFEL |
| Ga0207702_102953761 | 3300026078 | Corn Rhizosphere | MSLRVVIVTRIPPVLQAFDAVVRDTGNEPVAFLTMRNVDGRYGPPSDTGDVVM |
| Ga0207698_108533471 | 3300026142 | Corn Rhizosphere | MSWRVVIVTRIAPVLAGFDAVVRDAGHEPVALMSMRDVD |
| Ga0207698_117523692 | 3300026142 | Corn Rhizosphere | MRVVLVTRILPVALGFHAAVRESGYDAVALLTIRDPERR |
| Ga0207698_121663202 | 3300026142 | Corn Rhizosphere | VSWRVVIVTRILPVALGFDAAIREAGHESVALLTIRDPEQRYGPWDLAG |
| Ga0209238_12224692 | 3300026301 | Grasslands Soil | VSLRAVIVTRILPVALGFDAVLRGAGHEPVGLLTIRDTENRY |
| Ga0209377_12504251 | 3300026334 | Soil | MSLRVVIVTRIPPVLAGFDGVIREAGHEVVGFLTIRNV |
| Ga0209807_11222603 | 3300026530 | Soil | VRVVVTTRILPVALGFDAVVREAGHEPVALLTIRDTD |
| Ga0209177_105115412 | 3300027775 | Agricultural Soil | MAWRVVIATRILPVALGFDAAIREAGHEPVALLTIRDLGGLYLDGSLH |
| Ga0209811_100145994 | 3300027821 | Surface Soil | MSWRVVIVTRIAPVLAGFDAVVRAVGREPVALMSMRDHDGRYGNLPDVGELR |
| Ga0209488_106124192 | 3300027903 | Vadose Zone Soil | MSLRVVIVTRIPPVLAAFDAVVRGTGHEPVAFLSMRNVDGRYGPPADTGDLVMAAADELDVLLPAH |
| Ga0265319_11503221 | 3300028563 | Rhizosphere | VQPSPPWRVAIVTRILPVALGFYAAVREAGHEPVALLSISDTDRRY |
| Ga0265322_100432862 | 3300028654 | Rhizosphere | MSWRVVIVTRIPPVLAGFDEAIRERGHKPVGLLTMLDRD |
| Ga0307310_101075621 | 3300028824 | Soil | MTPAMPWRVAIVTRILPVVLGFYSSLRGAGHEPVALLTVRD |
| Ga0265320_100280011 | 3300031240 | Rhizosphere | VVPQPPWRVVIVTRIPPVAVGFHAAVSEAGHEPVALLTIRDTDSRYGQEFTTPDL |
| (restricted) Ga0255312_11762421 | 3300031248 | Sandy Soil | VRVVLTTRILPVAVGFDAVLRAAGHEPVGLLTIRDAGNRYGSEFTL |
| Ga0318573_104361742 | 3300031564 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGEL |
| Ga0318521_107426082 | 3300031770 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELVLD |
| Ga0318557_103460971 | 3300031795 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELVLGAADELD |
| Ga0318564_101962601 | 3300031831 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELV |
| Ga0308175_1003189061 | 3300031938 | Soil | MSWRVVIVTRIAPVLTGFDAVVRAAGHEPVALLTMRDHAGRYGNLPDIGQLVLSAAP |
| Ga0308175_1011225752 | 3300031938 | Soil | MSWRVVIATRILPVLDGFYAAVRDAGHEPVALLTMRIVDERYGAI |
| Ga0318562_100716761 | 3300032008 | Soil | MSLRVVIVTRIPPVLAAFDAVVRATGNEPVALLSMRNADGRYGPVADTGELVLDAADELD |
| Ga0307470_111458142 | 3300032174 | Hardwood Forest Soil | VSLRVVIVTRIPPVLAGFDGVVREAGHEVVGFLTMRNSDGRYGPHSLTDEL |
| Ga0307471_1019826801 | 3300032180 | Hardwood Forest Soil | VTPWRAVIATRILPVALGFYAALREAGHEPVALLTIRDTDG |
| Ga0306920_1035959391 | 3300032261 | Soil | MSWRVVVATRIAPVLAGFDAVVRAAGHEPVALLSMR |
| Ga0335082_114235332 | 3300032782 | Soil | MSLRVVIVTRIPQVLAAFDAVVRATGHEPVAFLTMRNVDG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |