Metagenome Family F081468

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F081468
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	49 residues
Representative Sequence	MDRLDDEDIGIIWARHYPKRAERASSMSLCVTLTMIIKQRAKS
Number of Associated Samples	96
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.07 %
% of genes near scaffold ends (potentially truncated)	90.35 %
% of genes from short scaffolds (< 2000 bps)	92.11 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (57.018 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.035 % of family members)
Environment Ontology (ENVO)	Unclassified (47.368 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (71.053 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.89% β-sheet: 0.00% Coil/Unstructured: 52.11%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00072	Response_reg	76.32
PF13091	PLDc_2	0.88
PF00011	HSP20	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.12 %
Unclassified	root	N/A	42.98 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	44.74 %
Unclassified	root	N/A	42.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.75 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	44.74 %
Unclassified	root	N/A	42.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.88 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.88 %
Candidatus Aminicenantes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	44.74 %
Unclassified	root	N/A	42.98 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	0.88 %
unclassified Aminicenantes	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes	0.88 %
Colwelliaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae	0.88 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	44.74 %
Unclassified	root	N/A	42.98 %
Candidatus Aminicenantes bacterium ADurb.Bin147	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium ADurb.Bin147	0.88 %
Limnohabitans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans	0.88 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	0.88 %
Colwelliaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111006\|2214584693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	524	Open in IMG/M
3300000559\|F14TC_100206733	Not Available	1267	Open in IMG/M
3300001431\|F14TB_104877905	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	751	Open in IMG/M
3300002899\|JGIcombinedJ43975_10036507	Not Available	810	Open in IMG/M
3300004114\|Ga0062593_100633906	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1027	Open in IMG/M
3300004157\|Ga0062590_100416189	Not Available	1109	Open in IMG/M
3300004463\|Ga0063356_104328962	Not Available	611	Open in IMG/M
3300004480\|Ga0062592_100015670	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3262	Open in IMG/M
3300005171\|Ga0066677_10038282	Not Available	2338	Open in IMG/M
3300005277\|Ga0065716_1009505	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	671	Open in IMG/M
3300005295\|Ga0065707_10858739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans	579	Open in IMG/M
3300005329\|Ga0070683_101668147	Not Available	613	Open in IMG/M
3300005347\|Ga0070668_102134340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae	517	Open in IMG/M
3300005353\|Ga0070669_100257739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1391	Open in IMG/M
3300005355\|Ga0070671_101281019	Not Available	646	Open in IMG/M
3300005440\|Ga0070705_101202116	Not Available	625	Open in IMG/M
3300005450\|Ga0066682_10821474	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	560	Open in IMG/M
3300005455\|Ga0070663_100282783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1322	Open in IMG/M
3300005456\|Ga0070678_101946861	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aminicenantes → unclassified Aminicenantes → Candidatus Aminicenantes bacterium ADurb.Bin147	555	Open in IMG/M
3300005457\|Ga0070662_100067868	All Organisms → cellular organisms → Bacteria	2620	Open in IMG/M
3300005457\|Ga0070662_101386357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	605	Open in IMG/M
3300005459\|Ga0068867_102108686	Not Available	534	Open in IMG/M
3300005543\|Ga0070672_100517365	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1034	Open in IMG/M
3300005557\|Ga0066704_10490951	Not Available	809	Open in IMG/M
3300005563\|Ga0068855_101712750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	641	Open in IMG/M
3300005563\|Ga0068855_101774540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	627	Open in IMG/M
3300005586\|Ga0066691_10831437	Not Available	544	Open in IMG/M
3300005615\|Ga0070702_101402773	Not Available	571	Open in IMG/M
3300005764\|Ga0066903_103026938	Not Available	910	Open in IMG/M
3300005764\|Ga0066903_103893947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	801	Open in IMG/M
3300005843\|Ga0068860_100836502	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	935	Open in IMG/M
3300006049\|Ga0075417_10248092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	853	Open in IMG/M
3300006237\|Ga0097621_101643615	Not Available	611	Open in IMG/M
3300006854\|Ga0075425_100533613	Not Available	1351	Open in IMG/M
3300006854\|Ga0075425_100857280	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1039	Open in IMG/M
3300006871\|Ga0075434_100203726	Not Available	1999	Open in IMG/M
3300006871\|Ga0075434_100521479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1208	Open in IMG/M
3300006904\|Ga0075424_101447870	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	729	Open in IMG/M
3300006904\|Ga0075424_101526975	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	709	Open in IMG/M
3300006914\|Ga0075436_100543227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	853	Open in IMG/M
3300007076\|Ga0075435_101694885	Not Available	555	Open in IMG/M
3300009094\|Ga0111539_10236497	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2127	Open in IMG/M
3300009094\|Ga0111539_13281478	Not Available	521	Open in IMG/M
3300009147\|Ga0114129_12423937	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	628	Open in IMG/M
3300009148\|Ga0105243_11428128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	713	Open in IMG/M
3300009162\|Ga0075423_10578639	Not Available	1183	Open in IMG/M
3300009162\|Ga0075423_12202644	Not Available	599	Open in IMG/M
3300009176\|Ga0105242_11286160	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	754	Open in IMG/M
3300009553\|Ga0105249_10682604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1086	Open in IMG/M
3300009553\|Ga0105249_10807534	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1002	Open in IMG/M
3300009553\|Ga0105249_10919072	Not Available	942	Open in IMG/M
3300010373\|Ga0134128_12624143	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	555	Open in IMG/M
3300010396\|Ga0134126_10462395	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1467	Open in IMG/M
3300010399\|Ga0134127_11780914	Not Available	692	Open in IMG/M
3300012198\|Ga0137364_10508093	Not Available	906	Open in IMG/M
3300012200\|Ga0137382_10331409	Not Available	1066	Open in IMG/M
3300012202\|Ga0137363_10741562	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300012210\|Ga0137378_10423143	Not Available	1235	Open in IMG/M
3300012349\|Ga0137387_10731969	Not Available	715	Open in IMG/M
3300012359\|Ga0137385_10408226	Not Available	1157	Open in IMG/M
3300012490\|Ga0157322_1001797	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1126	Open in IMG/M
3300012685\|Ga0137397_10844540	Not Available	679	Open in IMG/M
3300012897\|Ga0157285_10313030	Not Available	538	Open in IMG/M
3300012930\|Ga0137407_12067266	Not Available	544	Open in IMG/M
3300012985\|Ga0164308_11416455	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300013296\|Ga0157374_10498232	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1222	Open in IMG/M
3300013297\|Ga0157378_11017224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	863	Open in IMG/M
3300013297\|Ga0157378_13313499	Not Available	500	Open in IMG/M
3300013306\|Ga0163162_11165830	Not Available	874	Open in IMG/M
3300013307\|Ga0157372_10466586	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1472	Open in IMG/M
3300014325\|Ga0163163_11926521	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	651	Open in IMG/M
3300015261\|Ga0182006_1298302	Not Available	529	Open in IMG/M
3300015262\|Ga0182007_10332580	Not Available	566	Open in IMG/M
3300015264\|Ga0137403_11375315	Not Available	553	Open in IMG/M
3300015371\|Ga0132258_10618706	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2720	Open in IMG/M
3300015371\|Ga0132258_10719124	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2515	Open in IMG/M
3300015371\|Ga0132258_11575867	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1658	Open in IMG/M
3300015371\|Ga0132258_13709459	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1042	Open in IMG/M
3300015372\|Ga0132256_102171741	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300015373\|Ga0132257_100472056	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1535	Open in IMG/M
3300015374\|Ga0132255_100036607	All Organisms → cellular organisms → Bacteria	6276	Open in IMG/M
3300015374\|Ga0132255_101594504	Not Available	989	Open in IMG/M
3300015374\|Ga0132255_101927302	Not Available	899	Open in IMG/M
3300015374\|Ga0132255_101958958	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	891	Open in IMG/M
3300016319\|Ga0182033_10512320	Not Available	1032	Open in IMG/M
3300016341\|Ga0182035_10558512	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	985	Open in IMG/M
3300016422\|Ga0182039_11036190	Not Available	737	Open in IMG/M
3300017792\|Ga0163161_10270200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1330	Open in IMG/M
3300017792\|Ga0163161_10411869	Not Available	1086	Open in IMG/M
3300018482\|Ga0066669_11739417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
3300019361\|Ga0173482_10791402	Not Available	502	Open in IMG/M
3300019879\|Ga0193723_1029136	Not Available	1667	Open in IMG/M
3300019882\|Ga0193713_1055341	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1137	Open in IMG/M
3300020002\|Ga0193730_1156845	Not Available	597	Open in IMG/M
3300020004\|Ga0193755_1080729	Not Available	1043	Open in IMG/M
3300020015\|Ga0193734_1067760	Not Available	633	Open in IMG/M
3300025903\|Ga0207680_11285541	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	520	Open in IMG/M
3300025917\|Ga0207660_10410601	Not Available	1091	Open in IMG/M
3300025919\|Ga0207657_10078616	All Organisms → cellular organisms → Bacteria	2777	Open in IMG/M
3300025923\|Ga0207681_11247457	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	624	Open in IMG/M
3300025935\|Ga0207709_11840449	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	504	Open in IMG/M
3300025940\|Ga0207691_10187414	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1806	Open in IMG/M
3300025960\|Ga0207651_10225310	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1518	Open in IMG/M
3300025972\|Ga0207668_10795781	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	837	Open in IMG/M
3300026041\|Ga0207639_10160412	All Organisms → cellular organisms → Bacteria	1894	Open in IMG/M
3300027873\|Ga0209814_10073603	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1437	Open in IMG/M
3300027907\|Ga0207428_10811125	Not Available	664	Open in IMG/M
3300028381\|Ga0268264_12634923	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M
3300031538\|Ga0310888_10515228	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	717	Open in IMG/M
3300031716\|Ga0310813_10171160	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1762	Open in IMG/M
3300033289\|Ga0310914_11885281	Not Available	502	Open in IMG/M
3300033475\|Ga0310811_10221868	Not Available	2277	Open in IMG/M
3300034115\|Ga0364945_0112640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	802	Open in IMG/M
3300034150\|Ga0364933_066390	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	899	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.77%
Environmental	Environmental	41.23%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.77%
Terrestrial	Environmental → Terrestrial	41.23%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	39.47%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.18%
Floodplain	Environmental → Terrestrial → Floodplain	1.75%
Roots	Host-Associated → Plants → Roots	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.65%
Loam	Environmental → Terrestrial → Soil → Loam	7.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.75%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.51%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.75%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.04%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	9.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.14%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.51%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.75%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015261	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034150	Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213625527	2209111006	Arabidopsis Rhizosphere	MDRLDDEDIGVIWARHYPKRAERASSMSLCVTLTMIIKQRAKSADQY
F14TC_1002067334	3300000559	Soil	MDRLDDEDIGLIWARHYPKRDESESSKSLCVTLAMIIKHRAESIILPY
F14TB_1048779051	3300001431	Soil	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRLRARSMT
JGIcombinedJ43975_100365071	3300002899	Soil	MDRLDDEDIGIIWERHYPKRVEHASSMSLCVTLTMIIKQRAKSADQYDPAKLDQVLASANRSKRTVRDSRE*
Ga0062593_1006339061	3300004114	Soil	MDRLDNEDIGIIWERHYSNRGQSASSMSLCVTLAMIIKQRAKSLDQYTDWSDKLHHAL
Ga0062590_1004161893	3300004157	Soil	HCGSEMDRLDDEDIGIIWGRHYSKRAEDASSMSLCVTLAMIIKQRAKTLDQYSD*
Ga0063356_1043289621	3300004463	Arabidopsis Thaliana Rhizosphere	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADNYDPAKLDQVL
Ga0062592_1000156707	3300004480	Soil	LQLAKSMDRLDNEDIGIIWERHYNNRGQSASSMSLCVTLAMIIKQRA
Ga0066677_100382825	3300005171	Soil	MDRLDNEDIGIIWARHYPKRAESASSMSLCLTLAMIIRLRARSMTQYS
Ga0065716_10095051	3300005277	Arabidopsis Rhizosphere	MDRLDDEDIGVIWARHYPKRAERASSMSLCVTLTMIIKQRAKSADQYDPAKLE
Ga0065707_108587391	3300005295	Switchgrass Rhizosphere	MDRLDDEDIGVIWARHYPKRAEHESSMSLCVTLTMIIKQRAKSADQYDRAKLDQVLA
Ga0070683_1016681471	3300005329	Corn Rhizosphere	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMIIKQR
Ga0070668_1021343401	3300005347	Switchgrass Rhizosphere	MDRLDDEDIGIIWARHYPKRAERASSMSLCVTLTMIIKQRAKS
Ga0070669_1002577395	3300005353	Switchgrass Rhizosphere	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADQY
Ga0070671_1012810192	3300005355	Switchgrass Rhizosphere	MDRLDDEDIGIIWGRHYPKRAEDASSMSLCVTLAMIIKQRAKTLDQYSDWPA
Ga0070705_1012021161	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLDDEDIGIIWGRHYSKRAEDASSMSLCVTLAMIIKQRAKTLDQYSDWPA
Ga0066682_108214741	3300005450	Soil	MDRLDNEDIGILWARHYPKRAENGSSKSLCLSLAMVIRLR
Ga0070663_1002827831	3300005455	Corn Rhizosphere	MDHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQSR*
Ga0070678_1019468612	3300005456	Miscanthus Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWPAKLEHALATAN
Ga0070662_1000678687	3300005457	Corn Rhizosphere	MDRLDDEDIGVIWARHYPKRAERASSMSLCVTLTMIIKQRAKS
Ga0070662_1013863572	3300005457	Corn Rhizosphere	MDHLDYEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWP
Ga0068867_1021086861	3300005459	Miscanthus Rhizosphere	MDRLDNEDIGMIWARHFPKRAESGSSRSLCLSLAMVLGCEPDP*
Ga0070672_1005173653	3300005543	Miscanthus Rhizosphere	MDHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQ
Ga0066704_104909511	3300005557	Soil	MDRLENEEIGMIWARHYPKRAESASSLSLCVTLALILKQRAKSVVHHKAWSD
Ga0068855_1017127502	3300005563	Corn Rhizosphere	MDRLDNEDIGIIWERHYPKRVEHASSMSLCVTLTMIIKQRAKSADQYDPAKL
Ga0068855_1017745401	3300005563	Corn Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQR
Ga0066691_108314371	3300005586	Soil	MDRLENEDIGIIWARHYPKRAERASSMSLCLTLAMIIRLRARSMTQYSDWRDKL
Ga0070702_1014027732	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MDRLDDEDIGIIWGRHYPKRAEDASSMSLCVTLAMIIKQRAKTLDQYSDW
Ga0066903_1030269383	3300005764	Tropical Forest Soil	MDRLDDEDIGIIWGRHYPKRAEHASSMSLCVTLAMIVKQRAKSLDQYNDWPAKLEHA
Ga0066903_1038939472	3300005764	Tropical Forest Soil	MDRLDDEDIGIIWGRHYPKRAEHASSTSLCVTLAMIIKQRAKSLDQYNDWPAKLEHALAAAHV
Ga0068860_1008365022	3300005843	Switchgrass Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWPVKLEHALATANI
Ga0075417_102480921	3300006049	Populus Rhizosphere	MDRLDNEEIGILWARHYPKRAENGSSKSLCLSLAMVIRLR
Ga0097621_1016436151	3300006237	Miscanthus Rhizosphere	MDRLDDEDIGIIWGRHYPKRAEDASSMSLCVTLAMIIKQRAK
Ga0075425_1005336133	3300006854	Populus Rhizosphere	MDRLDDEDIGIIWGRHYPKRAEDASSMSLCVTLAMIIKQRAKTLDQYSDWPAK
Ga0075425_1008572803	3300006854	Populus Rhizosphere	MDRLDNEDIGIIWERHYSNRGQSASSMSLCVTLAMIIKQRAKSVDQYTDWSDKLHHAL
Ga0075434_1002037265	3300006871	Populus Rhizosphere	MHCGSEMDRLDDEDIGIIWGRHYSKRAEDASSMSLCVTLAMIIKQRAKTLDQYSDWPAK
Ga0075434_1005214792	3300006871	Populus Rhizosphere	MDRLDNEDIGMIWARHFPKRAESGSSRSLCLSLAMVLRLRARSMTHQSDWSDKLE*
Ga0075424_1014478702	3300006904	Populus Rhizosphere	MDRLDNEEIGIIWSRHYPKRAENGSSKSLCLSLAMVIRLRARSMTQQSDWSDKLEHILAD
Ga0075424_1015269751	3300006904	Populus Rhizosphere	MDRLDNEDIGMIWARHFPKRAESGSSRSLCLSLAMVLRLRARSMTHQSDWSDKLE
Ga0075436_1005432271	3300006914	Populus Rhizosphere	MDHLDYEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQR
Ga0075435_1016948851	3300007076	Populus Rhizosphere	MDHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWPAKLE
Ga0111539_102364974	3300009094	Populus Rhizosphere	MDRLDNEDIGIIWERHYSNRRQSASSMSLCVTLAMIIKQRAKSVDQYPDWSD
Ga0111539_132814781	3300009094	Populus Rhizosphere	MDRLDDEDIGIIWARHYPKRAERASSMSLCVTLTMIIKQRAKSADPYDEWPAKLDHALNMAH
Ga0114129_124239372	3300009147	Populus Rhizosphere	MDRLDDEDIGIIWERHYPKRVENASSMSLCVTLTLIIKQRAK
Ga0105243_114281281	3300009148	Miscanthus Rhizosphere	MDHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWP
Ga0075423_105786392	3300009162	Populus Rhizosphere	MDRLDDEDIGVIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADQYD
Ga0075423_122026441	3300009162	Populus Rhizosphere	MDRLDDEDIGIIWGRHYSKRAEHASSMSLCVTLAMIIKQ
Ga0105242_112861602	3300009176	Miscanthus Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVK
Ga0105249_106826042	3300009553	Switchgrass Rhizosphere	MDHLDYEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQSR*
Ga0105249_108075342	3300009553	Switchgrass Rhizosphere	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRL
Ga0105249_109190721	3300009553	Switchgrass Rhizosphere	MDRLDNEEIGIIWARHYPKRAESGSSRSLCLSLAMVLRLR
Ga0134128_126241431	3300010373	Terrestrial Soil	MDRLDNEDIGMIWARHFPKRTESGSSRSLCLSLAMVLRLRARSMTHQSDWS
Ga0134126_104623951	3300010396	Terrestrial Soil	MDHLDDEDSGIIWARHYPKRAEHASSMSLCVTLAMIVKQRGKSV
Ga0134127_117809142	3300010399	Terrestrial Soil	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADNYDPA
Ga0137364_105080932	3300012198	Vadose Zone Soil	MDRLENEEIGMIWARHYPKRAESASSLSLCVTLALILKQRAKSVVHHKAWSDKLRHVLSAAR
Ga0137382_103314091	3300012200	Vadose Zone Soil	MDRLENEDVGMIWARHYPKRAERASSMSLCLTLAMIIRLRARSMTQYSDW
Ga0137363_107415621	3300012202	Vadose Zone Soil	MDRLQNEDIGIIWARHYPKRAESASSMSLCVTLAMI
Ga0137378_104231432	3300012210	Vadose Zone Soil	MDRLENEEIGMIWARHYPKRAESASSLSLCVTLALILKQRAKSVVHHKAWS
Ga0137387_107319691	3300012349	Vadose Zone Soil	MDRLENEDVGMIWARHYLKRAERASSMSLCLTLAMIIRLRARSMTQYSDWRDKLQHVL
Ga0137385_104082261	3300012359	Vadose Zone Soil	MDRLENEEIGMIWARHYPKRAESASSLSLCVTLALILKQRAKSVV
Ga0157322_10017971	3300012490	Arabidopsis Rhizosphere	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRLRARSMTQQSDW
Ga0137397_108445402	3300012685	Vadose Zone Soil	MDRLDNEGIGMIWARHFPKRAENGSSKSLCLSLAMVIR
Ga0157285_103130302	3300012897	Soil	MDRLDDEDIGIIWERHYPKRTERESSMSLCVTLTMIIKQRAKSADNYNPAKLDQVLA
Ga0137407_120672661	3300012930	Vadose Zone Soil	MDRLDNEDIGLSWARHYPKRSESQSSKSLCVTLAMIIKQRAES
Ga0164308_114164551	3300012985	Soil	MDRLDDEDIGITWARHYPKCAERASSMSLCVTLTMIIK*
Ga0157374_104982323	3300013296	Miscanthus Rhizosphere	MDRLDDEDIGIIWARHYPKRAERASSMSLCVTLTMIIKQRAKSADPYDEWP
Ga0157378_110172242	3300013297	Miscanthus Rhizosphere	MDRLDNEDIGIIWERHYPKRVEHASSMSLCVTLTMIIKQRAKSADQYDPA
Ga0157378_133134991	3300013297	Miscanthus Rhizosphere	DHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQSR*
Ga0163162_111658302	3300013306	Switchgrass Rhizosphere	MDRLDNEEIGIIWARHYPKRAESGSSRSLCLSLAIVLRL
Ga0157372_104665861	3300013307	Corn Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQRAKS
Ga0163163_119265211	3300014325	Switchgrass Rhizosphere	MDRLDNEDIGIIWERHYPKRVEHASSMSLCVTLTMIIKQRAKSADQYDAAKLGQ
Ga0182006_12983021	3300015261	Rhizosphere	MDRLDDEDIGIIWERHDPKRVEHASSMSLCVTLTMIIKQRAKSADQYDP
Ga0182007_103325801	3300015262	Rhizosphere	MDRLDDEDIGIIWERHYPKRVEHASSMSLCVTLTMIIMDRAKSAV*
Ga0137403_113753151	3300015264	Vadose Zone Soil	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRLRARSMTQQSDWSDK
Ga0132258_106187062	3300015371	Arabidopsis Rhizosphere	MDRLDDADIGIIWERHYPKRAESGSSMSLCITLTMIIKQRTKLVNQYEAWSLN*
Ga0132258_107191245	3300015371	Arabidopsis Rhizosphere	MDRLDDEDIGFIWARHYSKRAGQASSMSLCITLAMIIKQRAKSLHQYNGWVSKLE
Ga0132258_115758673	3300015371	Arabidopsis Rhizosphere	MDRLDDEDIGIIWARHYPKRAEQASSMSLCVTLTMIIKQRAKSADQYDPAKLE
Ga0132258_137094594	3300015371	Arabidopsis Rhizosphere	MDRLDDEDIGVIWARHYPKRAERASSMSLCVTLTMII
Ga0132256_1021717412	3300015372	Arabidopsis Rhizosphere	MDRLDDEDIGFIWARHYPKRAEQASTMSLCVTLAMIIKQRAK
Ga0132257_1004720561	3300015373	Arabidopsis Rhizosphere	MDRLDDEDIGFIWARHYSKRAGQVSSMSLCITLAMIIKQRAKSLHQYN
Ga0132255_1000366075	3300015374	Arabidopsis Rhizosphere	MDRLDDEDIGIIWARHYPKRTERQSSMSLCVTHTMIIKQRAKSADQYDPVN*
Ga0132255_1015945042	3300015374	Arabidopsis Rhizosphere	MDRLDDEDIGVIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADQYDPAKLDQVLA
Ga0132255_1019273021	3300015374	Arabidopsis Rhizosphere	MDRLDNEEIGIIWARHYPKRAESGSSRSLCLSLAIVLRLRARSMTHQSDWSDKLEQILAD
Ga0132255_1019589581	3300015374	Arabidopsis Rhizosphere	MDRLDDEDIGIIWARHYPKRAERASSMSLCVTLTMIIKQRAKSADQYDPAKLEHA
Ga0182033_105123203	3300016319	Soil	MDRLDDEDIGIIWGRHYPKRAEHSSSTSLCVTLAMIIKQRAKSLDQYNDWPAKLE
Ga0182035_105585121	3300016341	Soil	MDRLDDEDIGIIWGRHYPKRAEHASSTSLCVTLAMIIKQRAKSLDQYNDWPAKLEHALA
Ga0182039_110361902	3300016422	Soil	MDRLDDEDIGIIWGRHYPKRAERASSTSLCVTLAMISKQRAKSRDQYNDWPAKLEHALAD
Ga0163161_102702002	3300017792	Switchgrass Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQSR
Ga0163161_104118692	3300017792	Switchgrass Rhizosphere	MDRLDNEEIGIIWARHYPKRAESGSSRSLCLSLAIVLRLRARSMTHQSDWSDKLE
Ga0066669_117394172	3300018482	Grasslands Soil	MDRLDNEDIGILWARHYPKRAENGSSKSLCLSLAMV
Ga0173482_107914022	3300019361	Soil	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADNYDPAKLDQVLASA
Ga0193723_10291361	3300019879	Soil	MDRLDNEDIGMIWARHYPKRAERASSMSLCLTLAMIIRLRARSMTQY
Ga0193713_10553411	3300019882	Soil	MDRLDNEGIGMIWARHFPKRAKNGSSKSLCVSLAIVIRL
Ga0193730_11568451	3300020002	Soil	MDRLENEEIGMIWARHYPKRAESASSMSLCVTLAMIIKQRAKSVLEYNACSDKLRHVL
Ga0193755_10807291	3300020004	Soil	MDRLENEEIGMIWARHYPKRAESASSLSLCVTLALILKQRAKSVVH
Ga0193734_10677601	3300020015	Soil	MDRLDNEDIGMIWARHYPKRAERASSMSLCLTLAMIIRLRARSMTQYSDWRDKLQHVL
Ga0207680_112855412	3300025903	Switchgrass Rhizosphere	MDRLDNEDIGIIWERHYSNRGQSASSMSLCVTLAMIIKQRAKSVDQYTDWSDKLHHALA
Ga0207660_104106013	3300025917	Corn Rhizosphere	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMIIKQRAKSADNYDPAKLD
Ga0207657_100786167	3300025919	Corn Rhizosphere	MDRLDDEDIGIIWERHYPKRTERESSMSLCVTLTMIIK
Ga0207681_112474571	3300025923	Switchgrass Rhizosphere	MDHLDDEDIGIIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWPVKLEHALAT
Ga0207709_118404492	3300025935	Miscanthus Rhizosphere	MDRLDNEDIGMIWARHYPKRAESGSSRSLCLSLAIVLRLRARSMTHQSDWSDKL
Ga0207691_101874144	3300025940	Miscanthus Rhizosphere	MDHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQSR
Ga0207651_102253104	3300025960	Switchgrass Rhizosphere	MDRLDNEDIGIIWERHYPKRVEHASSRSLCVTLTMIIKQRAKLADQYDP
Ga0207668_107957811	3300025972	Switchgrass Rhizosphere	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIR
Ga0207639_101604124	3300026041	Corn Rhizosphere	MDHRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQRAKSVDQYSDWPVKLEHALATAN
Ga0209814_100736033	3300027873	Populus Rhizosphere	MDRLDNEDIGLIWARHYPKRDESQSSKSLCVTLAMIIKH
Ga0207428_108111252	3300027907	Populus Rhizosphere	HRDDEDIGVIWARHYPKRAEHASSMSLCVTLAMIVKQSR
Ga0268264_126349232	3300028381	Switchgrass Rhizosphere	MDRLDNEDIGIIWERHYNNRGQSASSMSLCVTLAMIIKQRAKSVDQYTDWSDKLHHALA
Ga0310888_105152282	3300031538	Soil	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRLRARSMTQQSDWSNKLEHIL
Ga0310813_101711602	3300031716	Soil	MDRLDNEDIGIIWERHYNNRGQSASSMSLCVTLAMIIKQRAKSVDQYTDWSDKLHHALAA
Ga0310914_118852811	3300033289	Soil	MDRLDDEDIGIIWARHYPKRAERTSSMSLCVTLAMIIKQRAKSIDQYND
Ga0310811_102218681	3300033475	Soil	MDRLDEEDIGIIWARHYPKRTERESSMSLCVTLTMII
Ga0364945_0112640_1_129	3300034115	Sediment	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRLRARS
Ga0364933_066390_773_898	3300034150	Sediment	MDRLDNEEIGIIWARHYPKRAENGSSKSLCLSLAMVIRLRAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081468

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences