Metagenome Family F081533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081533
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	93 residues
Representative Sequence	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDALDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI
Number of Associated Samples	68
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	74.56 %
% of genes near scaffold ends (potentially truncated)	30.70 %
% of genes from short scaffolds (< 2000 bps)	80.70 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.298 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (23.684 % of family members)
Environment Ontology (ENVO)	Unclassified (42.105 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.263 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.17% β-sheet: 38.33% Coil/Unstructured: 52.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
e.5.1.1: Heme-dependent catalases	d1m7sa_	1m7s	0.54974
b.167.1.0: automated matches	d4b0ma_	4b0m	0.51824
e.5.1.2: Allene oxide synthase	d1u5ua_	1u5u	0.51197
d.142.1.6: Eukaryotic glutathione synthetase ATP-binding domain	d1m0wa2	1m0w	0.51009
b.167.1.1: Usher N-domain	d1ze3d1	1ze3	0.50527

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF04392	ABC_sub_bind	2.63
PF00313	CSD	1.75
PF03703	bPH_2	1.75
PF05661	DUF808	1.75
PF08592	Anthrone_oxy	1.75
PF13545	HTH_Crp_2	0.88
PF00106	adh_short	0.88
PF01548	DEDD_Tnp_IS110	0.88
PF01402	RHH_1	0.88
PF04314	PCuAC	0.88
PF03734	YkuD	0.88
PF01042	Ribonuc_L-PSP	0.88
PF00403	HMA	0.88
PF00528	BPD_transp_1	0.88
PF01226	Form_Nir_trans	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.63
COG2354	Membrane protein MutK/YedI, may be involved in DNA repair	Replication, recombination and repair [L]	1.75
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	1.75
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	1.75
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.88
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2116	Formate/nitrite transporter FocA, FNT family	Inorganic ion transport and metabolism [P]	0.88
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.88
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.88
COG2847	Copper(I)-binding protein	Inorganic ion transport and metabolism [P]	0.88
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
All Organisms	root	All Organisms	30.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
cellular organisms	root	All Organisms → cellular organisms	30.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.63 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.63 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.30 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.63 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.75 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101636551	Not Available	819	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1008560	Not Available	1660	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10024084	Not Available	1662	Open in IMG/M
3300000787\|JGI11643J11755_11754569	Not Available	733	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10001640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4839	Open in IMG/M
3300000955\|JGI1027J12803_100047783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2244	Open in IMG/M
3300000955\|JGI1027J12803_102623299	Not Available	1246	Open in IMG/M
3300001431\|F14TB_100592722	Not Available	834	Open in IMG/M
3300001431\|F14TB_101740155	Not Available	1276	Open in IMG/M
3300004479\|Ga0062595_100238753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1166	Open in IMG/M
3300004479\|Ga0062595_101749643	Not Available	588	Open in IMG/M
3300005289\|Ga0065704_10492456	Not Available	673	Open in IMG/M
3300005332\|Ga0066388_100756551	Not Available	1571	Open in IMG/M
3300005332\|Ga0066388_101602032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1146	Open in IMG/M
3300005332\|Ga0066388_102409315	Not Available	955	Open in IMG/M
3300005332\|Ga0066388_102542437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	931	Open in IMG/M
3300005332\|Ga0066388_103318262	Not Available	822	Open in IMG/M
3300005332\|Ga0066388_103769147	Not Available	774	Open in IMG/M
3300005332\|Ga0066388_103945913	Not Available	757	Open in IMG/M
3300005332\|Ga0066388_105855983	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300005713\|Ga0066905_100143566	Not Available	1707	Open in IMG/M
3300005713\|Ga0066905_100315739	Not Available	1234	Open in IMG/M
3300005713\|Ga0066905_100383329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1134	Open in IMG/M
3300005713\|Ga0066905_100532780	Not Available	982	Open in IMG/M
3300005713\|Ga0066905_101872463	Not Available	555	Open in IMG/M
3300005713\|Ga0066905_101963063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	542	Open in IMG/M
3300005713\|Ga0066905_102058075	Not Available	530	Open in IMG/M
3300005764\|Ga0066903_100878843	Not Available	1618	Open in IMG/M
3300005764\|Ga0066903_100879715	Not Available	1617	Open in IMG/M
3300005764\|Ga0066903_101267465	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300005764\|Ga0066903_107461985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	564	Open in IMG/M
3300005937\|Ga0081455_10008315	All Organisms → cellular organisms → Bacteria → Proteobacteria	10810	Open in IMG/M
3300005937\|Ga0081455_10023991	All Organisms → cellular organisms → Bacteria	5661	Open in IMG/M
3300005937\|Ga0081455_10029875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4963	Open in IMG/M
3300005937\|Ga0081455_10084001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2600	Open in IMG/M
3300006049\|Ga0075417_10029391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2266	Open in IMG/M
3300006049\|Ga0075417_10077294	Not Available	1481	Open in IMG/M
3300006049\|Ga0075417_10226767	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300006058\|Ga0075432_10020212	Not Available	2277	Open in IMG/M
3300006194\|Ga0075427_10006987	Not Available	1652	Open in IMG/M
3300006196\|Ga0075422_10049081	Not Available	1523	Open in IMG/M
3300006196\|Ga0075422_10367350	Not Available	630	Open in IMG/M
3300006844\|Ga0075428_101988825	Not Available	603	Open in IMG/M
3300006847\|Ga0075431_100255030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1781	Open in IMG/M
3300006852\|Ga0075433_10520338	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300006854\|Ga0075425_100111336	Not Available	3121	Open in IMG/M
3300006854\|Ga0075425_102862865	Not Available	530	Open in IMG/M
3300006880\|Ga0075429_100015740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6552	Open in IMG/M
3300006903\|Ga0075426_10353779	Not Available	1080	Open in IMG/M
3300006904\|Ga0075424_100124536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2724	Open in IMG/M
3300009100\|Ga0075418_10344665	Not Available	1590	Open in IMG/M
3300009100\|Ga0075418_11366808	Not Available	768	Open in IMG/M
3300009147\|Ga0114129_10178603	Not Available	2890	Open in IMG/M
3300009147\|Ga0114129_11832059	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300009162\|Ga0075423_10163966	Not Available	2333	Open in IMG/M
3300009162\|Ga0075423_10371167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1501	Open in IMG/M
3300009162\|Ga0075423_11011468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	883	Open in IMG/M
3300009168\|Ga0105104_10544684	Not Available	656	Open in IMG/M
3300009168\|Ga0105104_10612433	Not Available	620	Open in IMG/M
3300009174\|Ga0105241_12518450	Not Available	515	Open in IMG/M
3300009176\|Ga0105242_11395627	Not Available	728	Open in IMG/M
3300009792\|Ga0126374_10579470	Not Available	824	Open in IMG/M
3300009792\|Ga0126374_10874921	Not Available	694	Open in IMG/M
3300010043\|Ga0126380_10470500	Not Available	956	Open in IMG/M
3300010043\|Ga0126380_11156988	Not Available	664	Open in IMG/M
3300010043\|Ga0126380_12050957	Not Available	525	Open in IMG/M
3300010046\|Ga0126384_10166165	Not Available	1714	Open in IMG/M
3300010046\|Ga0126384_10735267	Not Available	877	Open in IMG/M
3300010046\|Ga0126384_11490706	Not Available	633	Open in IMG/M
3300010046\|Ga0126384_12432425	Not Available	507	Open in IMG/M
3300010047\|Ga0126382_10862224	Not Available	779	Open in IMG/M
3300010047\|Ga0126382_11977364	Not Available	554	Open in IMG/M
3300010358\|Ga0126370_12069122	Not Available	558	Open in IMG/M
3300010359\|Ga0126376_10479263	All Organisms → cellular organisms → Bacteria → Proteobacteria	1145	Open in IMG/M
3300010359\|Ga0126376_11020729	Not Available	829	Open in IMG/M
3300010361\|Ga0126378_12251164	Not Available	622	Open in IMG/M
3300010362\|Ga0126377_10004331	Not Available	10310	Open in IMG/M
3300010362\|Ga0126377_10835562	Not Available	981	Open in IMG/M
3300010362\|Ga0126377_11059342	Not Available	879	Open in IMG/M
3300010366\|Ga0126379_13495723	Not Available	526	Open in IMG/M
3300010398\|Ga0126383_10112817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2457	Open in IMG/M
3300010398\|Ga0126383_11082587	Not Available	891	Open in IMG/M
3300010400\|Ga0134122_13349710	Not Available	504	Open in IMG/M
3300011003\|Ga0138514_100122125	Not Available	573	Open in IMG/M
3300012948\|Ga0126375_10145702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1485	Open in IMG/M
3300012948\|Ga0126375_10173377	Not Available	1387	Open in IMG/M
3300012957\|Ga0164303_10056994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1761	Open in IMG/M
3300012971\|Ga0126369_11520454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	759	Open in IMG/M
3300012984\|Ga0164309_10380524	Not Available	1046	Open in IMG/M
3300016270\|Ga0182036_10009136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5190	Open in IMG/M
3300016371\|Ga0182034_10077415	Not Available	2305	Open in IMG/M
3300016422\|Ga0182039_10205134	Not Available	1575	Open in IMG/M
3300018067\|Ga0184611_1180263	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300018072\|Ga0184635_10287774	Not Available	647	Open in IMG/M
3300018073\|Ga0184624_10269794	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300025916\|Ga0207663_11691568	Not Available	509	Open in IMG/M
3300027873\|Ga0209814_10029753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2245	Open in IMG/M
3300027873\|Ga0209814_10069344	Not Available	1481	Open in IMG/M
3300027873\|Ga0209814_10174238	Not Available	926	Open in IMG/M
3300027874\|Ga0209465_10445191	Not Available	648	Open in IMG/M
3300027880\|Ga0209481_10022111	Not Available	2823	Open in IMG/M
3300027907\|Ga0207428_10116114	Not Available	2056	Open in IMG/M
3300028814\|Ga0307302_10224102	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300031545\|Ga0318541_10074277	Not Available	1789	Open in IMG/M
3300031545\|Ga0318541_10561225	Not Available	639	Open in IMG/M
3300031573\|Ga0310915_10751041	Not Available	687	Open in IMG/M
3300031833\|Ga0310917_10002029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9803	Open in IMG/M
3300031846\|Ga0318512_10302912	Not Available	795	Open in IMG/M
3300031941\|Ga0310912_10794236	Not Available	731	Open in IMG/M
3300031946\|Ga0310910_10877392	Not Available	704	Open in IMG/M
3300031947\|Ga0310909_10290993	Not Available	1368	Open in IMG/M
3300032041\|Ga0318549_10268803	Not Available	768	Open in IMG/M
3300032180\|Ga0307471_102263309	Not Available	685	Open in IMG/M
3300032261\|Ga0306920_100025659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8322	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.18%
Host-Associated	Host-Associated	29.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.79%
Plants	Host-Associated → Plants	29.82%
Aquatic	Environmental → Aquatic	4.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.39%
Sediment	Environmental → Aquatic → Sediment	2.63%
Freshwater	Environmental → Aquatic → Freshwater	1.75%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.44%
Loam	Environmental → Terrestrial → Soil → Loam	20.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.88%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	23.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.51%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.51%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.63%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1016365512	3300000364	Soil	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGDLVSMPSRFRIELTAEQLVSMGAAVQPNQNXEEIDVTEFVRLGLLKPX*
AF_2010_repII_A01DRAFT_10085601	3300000580	Forest Soil	QAVELYKGVVLPPGSYPGIKAQARESALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
AF_2010_repII_A1DRAFT_100240841	3300000597	Forest Soil	RKIILEAAQAVELYKGVVLPPGSYPGIKAQARESALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
JGI11643J11755_117545692	3300000787	Soil	VLASADQEGSPVPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIEFTAEQLASMGATVQPNQSLEEIDVTEFVRLGLLTPT*
AF_2010_repII_A001DRAFT_100016408	3300000793	Forest Soil	VRDLKVMHSAVLASPVKGGPMPFKETRKIILEAAQAVELYKGVVLPPGSYPGIKAQARESALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
JGI1027J12803_1000477835	3300000955	Soil	MPFTETTGITLVAVQDVDLHAGIVMPPGSYPGTKTRTRVSYLDGSVNWTPARYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPA*
JGI1027J12803_1026232992	3300000955	Soil	MPFTEVTKITLEPAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRLGLLKPA*
F14TB_1005927222	3300001431	Soil	MGPVGCSKKSALGRVSLRVLGGPMPFTEVTKITLEPAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRLGLLKPA*
F14TB_1017401552	3300001431	Soil	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPV*
Ga0062595_1002387532	3300004479	Soil	MPFTETTKITLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEIDVTELVRLGLLKPA*
Ga0062595_1017496431	3300004479	Soil	VLASADQEGSPVPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKPA*
Ga0065704_104924562	3300005289	Switchgrass Rhizosphere	MPFTETTKITLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEI
Ga0066388_1007565514	3300005332	Tropical Forest Soil	MPFTETTKITLEAVKAVELYRGVVLPPGSYRGIKAQAREAALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRQGKLTIR*
Ga0066388_1016020322	3300005332	Tropical Forest Soil	MPVTEVTKITLEAVQAVELHRGVVLPPGSYPGIKAQTREAALDSGITWSPIRYRIELTAGQLASMGATVQPNQSSEEIDVTEFVRSGLLKPI*
Ga0066388_1024093152	3300005332	Tropical Forest Soil	MPFTEVTKITLEAAKAVDLHTGIALSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRFGLLKPASRGGTVHDH*
Ga0066388_1025424372	3300005332	Tropical Forest Soil	MPFAETTKITLEATQAVELYKGVILPPGTYPGIKAQAREDALDSGVTWSPIRYRIKFTAEQLASMGAAVQPNQSSEEIDVTEFLRSGLLKPI*
Ga0066388_1033182622	3300005332	Tropical Forest Soil	MPFTETTKITLEAAQAVELHRGIVMPPGSYSGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGASVQANQSSEEIDVTEFVRLGKLTIR*
Ga0066388_1037691471	3300005332	Tropical Forest Soil	PMPFTETTRITLEAAQAVELHRGMILPPGLYPGIKALDSSVTWSPIRYRIELTPEQLASMGAAVQPNQSSEEIDVTEFVRLGLLKAI*
Ga0066388_1039459131	3300005332	Tropical Forest Soil	MPFTETTKITLEAAKAVELSKGVVLPPGSYPGIKAQAREDVLDSGITWSPIRYRIELTAEQLASMGAALQRNQDSEEIDVTEFVRLGLLKPI*
Ga0066388_1058559831	3300005332	Tropical Forest Soil	AVNLHTGIVLPPGSYPGIKARAREDALDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0066905_1001435663	3300005713	Tropical Forest Soil	MPFTEATKITLEAAQAVELHAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGATGQPNQSSEEIDVTEFVRIGLLKPV*
Ga0066905_1003157393	3300005713	Tropical Forest Soil	FTETRKITLEAAQAVELYKGVILPPGTYPGIKAQAREDALDSGVTWSPIRYRIKFTAEQLASMGAAVQPNQSSEEIDVTEFLRSGLLKPI*
Ga0066905_1003833292	3300005713	Tropical Forest Soil	MPFTETGKITLEAAQAVELYKGVVLPPGSYPGIKAQARESVLDSGVTWSPIRYRIELTAKQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0066905_1005327802	3300005713	Tropical Forest Soil	MPFTEATKITLEAAQAVELHAGVVLPPGSYSGIKAWVREDALGGLIPTPSRFRIELTAEQLGSMGATVQPNQNSEEIDVTEFVRLGLLKPI*
Ga0066905_1018724631	3300005713	Tropical Forest Soil	KITLQALQAVELHRGVVLPPGSYPGIKAQAREAALDSGVTWSPIRYRIELTAEQLASMGATVQPNQNSEEIDVTEFVRSGLLKPI*
Ga0066905_1019630631	3300005713	Tropical Forest Soil	MPFTETTRITLEAAEAVDLDTGIVLPPGSYRGIKARAREDALDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGKLTIR*
Ga0066905_1020580752	3300005713	Tropical Forest Soil	MPFTETTKITLEAAQAVELHRGIVMPPGSYSGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASIGATVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0066903_1008788431	3300005764	Tropical Forest Soil	MPVTEVTKITLEAVQAVELHRGVVLPPGSYPGIKAQTREAALDSGITWSPIRYRIELTAGQLASMGATVQPNQSSEEIDVTEFVR
Ga0066903_1008797153	3300005764	Tropical Forest Soil	MPFTETIKITLEAAQAVELHRGIVMPPGSYSGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGATVQPNQSSEEMDVTEFVRQGKLTLV*
Ga0066903_1012674652	3300005764	Tropical Forest Soil	MPFTETTRITLEAAQAVELHAGMILAPGLYPGIKALDSSVTWSPIRYRIELTAEQLASMGAAVQPNQSPEEIDVTEFVRLGLLKAI*
Ga0066903_1074619851	3300005764	Tropical Forest Soil	KITLEAAQAVELHRGIVMPPGSYSGTKTRTRVSYLVNWTPTRYRIELPAEQLASMGASVQPNQSSEEIDVTEFVRKGLLKLV*
Ga0081455_100083159	3300005937	Tabebuia Heterophylla Rhizosphere	MPFIETTKITLEAAQAVELHGGMVLPPGSYPGTKSRAREDALGGEIWSTTRYRIELTADQLASMGATVQPNQSSEEIDVTEFIRLGKFRVA*
Ga0081455_100239911	3300005937	Tabebuia Heterophylla Rhizosphere	MPFTEATKITLEAAQAVELHAGVVLPPGSYSGIKACVREDALGSLISTPSRFRIELTAEQLVSMGATVQPNQSSEEIDVTEFVRLGLLKPA
Ga0081455_1002987513	3300005937	Tabebuia Heterophylla Rhizosphere	MSAMAATHSTVLASTDQEGGAVPFTETKKITLEAAQAVDLHTGIALQPGSYPGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0081455_100840015	3300005937	Tabebuia Heterophylla Rhizosphere	LTVLACADQEGGPVAFTETRKITFEAAEAVDLHTGAILPPGSYPGTKTRTRVSYLDGSVTWTPTRYRIELTAIQLANMGAERQRHLSSEEIDVTEFVRLGLLKPA*
Ga0075417_100293913	3300006049	Populus Rhizosphere	MPFTETRKITLEAAQAVDLDTGIVVPPGRYPGTKTRTRVSYLDGSINWTPTRYRIELTVEQLASMGATVQPNQSSEEIDVTEFVRLGKLRVA*
Ga0075417_100772945	3300006049	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLL
Ga0075417_102267672	3300006049	Populus Rhizosphere	VPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKPA*
Ga0075432_100202123	3300006058	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGDLVSMPSRFRIELTAEQLVSMGAAVQPNQNWEEIDVTEFVRLGC*
Ga0075427_100069875	3300006194	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPA*
Ga0075422_100490811	3300006196	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGC*
Ga0075422_103673501	3300006196	Populus Rhizosphere	MGPVGCSKKSALGRVSLRVLGGPMPFTEVTKITLEAAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0075428_1019888253	3300006844	Populus Rhizosphere	MPFTEVTKITLEAAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVT
Ga0075431_1002550303	3300006847	Populus Rhizosphere	LEAAQAVDLDTGIVVPPGRYPGTKTRTRVSYLDGSINWTPTRYRIELTVEQLASMGATVQPNQSSEEIDVTEFVRLGKLRVA*
Ga0075433_105203382	3300006852	Populus Rhizosphere	VLASADQEGSPVPFTETKKITLEAAQAVALDSGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKLA*
Ga0075425_1001113363	3300006854	Populus Rhizosphere	VPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKLA*
Ga0075425_1028628653	3300006854	Populus Rhizosphere	MPFTEVTKITLEAAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRLGKLRVA*
Ga0075429_1000157401	3300006880	Populus Rhizosphere	VPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTVEQLASMGATVQPNQSSEEIDVTEFVRLGKLRVA*
Ga0075426_103537793	3300006903	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWLREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPA*
Ga0075424_1001245364	3300006904	Populus Rhizosphere	VLASADQEGSPVPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKLA*
Ga0075418_103446654	3300009100	Populus Rhizosphere	LEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLK
Ga0075418_113668082	3300009100	Populus Rhizosphere	MPFTEVTKITLEAAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0114129_101786031	3300009147	Populus Rhizosphere	ASGVLASADQEGSPVPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKLA*
Ga0114129_118320593	3300009147	Populus Rhizosphere	MPFTEVTKITLEAAEAVDLHTGITLSPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSE
Ga0075423_101639664	3300009162	Populus Rhizosphere	LEAGQAVELCAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPA*
Ga0075423_103711671	3300009162	Populus Rhizosphere	TGITLVAVQDVDLHAGIVMPPGSYPGTKTRTRVSYLDGSVIWTPTRYRIELTAEQLANMGAAVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0075423_110114681	3300009162	Populus Rhizosphere	MPFTETRKITLEAAQAVDLDTGIVVPPGRYPGTKTRTRVNYLDGSINWTPTRYRIELTVEQLASMGATVQPNQSSEEIDVTEFVRLGKLRVA*
Ga0105104_105446842	3300009168	Freshwater Sediment	MPFTEATKITFELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0105104_106124331	3300009168	Freshwater Sediment	MPFTETKKITLEAAQAVDLDTGIVMPPGSYPGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPEI*
Ga0105241_125184501	3300009174	Corn Rhizosphere	MPFTETTKITLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEIDVTEFVRQGQLTIR*
Ga0105242_113956271	3300009176	Miscanthus Rhizosphere	FTETTKITLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEIDVTELVRLGLLKPA*
Ga0126374_105794702	3300009792	Tropical Forest Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0126374_108749212	3300009792	Tropical Forest Soil	MHSAVLASPVKGWPMPFTETRKITLEAAQAVELYKGVVLPPGSYPGIKAQAREAALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRSGLLKPI*
Ga0126380_104705001	3300010043	Tropical Forest Soil	MPFTEATKITLEAAQAVELHAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGATVQLNQSSEEIDVTEFVRLGL
Ga0126380_111569883	3300010043	Tropical Forest Soil	MPFSETTRITLEATKAVNLHAGIILPPGVYPGIKAQAREDTLDSGVTWSPIRYRIELTAEQLASMGAKVQRDQSSEEIDVTEFVRLGLLKQSESA*
Ga0126380_120509571	3300010043	Tropical Forest Soil	MPFTETTKITLEAAQAVELHTGVVLPPGSYSGIKARAREDALDGLILTPTRFRIQLTAEQLVSMGATGQHNQSSEEIEVTEFVRQGQLTIRYASDPE
Ga0126384_101661652	3300010046	Tropical Forest Soil	MPFTETTKITLEAAQAVELHTGVVLPPGSYSGIKARAREDALDGLILTPTRFRIQLTAEQLVSMGATGQPNQSSEEIDVTEFVRQGQLTIRYASDPESDRI*
Ga0126384_107352671	3300010046	Tropical Forest Soil	MPFTETTKVTLEAAQAVKLHPGIVLPPGSYPGTKARAREDALDGVVTSSPIRYRLELTEEQLVSMGATVQHDLRSEQIDVTEFVRQGQLTIRGGS*
Ga0126384_114907061	3300010046	Tropical Forest Soil	MPFTETTRINLEAAEAVDLHTGIVLPPGSYPGIKAQARESALDSGITWSPIRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGLLKPIGA*
Ga0126384_124324251	3300010046	Tropical Forest Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDALDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0126382_108622242	3300010047	Tropical Forest Soil	MPFTETTKITLEAAQAVELHTGVVLPPGSYSGIKARAREDALDGLILTPTRFRIRLTAEQLVSMGATGQPNQSSEEIDVTEFVRQGQLTIRYASDPESDRI*
Ga0126382_119773642	3300010047	Tropical Forest Soil	MPFTETRKITLEAAQAVELYKGVMLPPGSYPGIKAQARESALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0126370_120691221	3300010358	Tropical Forest Soil	MPFTETTRITLEAAEAVNLHTGIVLPPGSYPGIKARAREDALDSGITWSPTRYRVELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0126376_104792631	3300010359	Tropical Forest Soil	PIKGWPMPFTEMTRITLEAAEAVNLHTGTVLPPGSYPGIKARAREDALDSGLTWSPIRYRIELTAEQLASMGASVQPNQSSEEIDVTAFVRLGLLKPI*
Ga0126376_110207291	3300010359	Tropical Forest Soil	MPFTEATKITLEAAQAVELHAGVVLPPGFYSGIKAWVREDALGGLISTPSRFRIELTAEQLGSMGATVQPNQNSEEIDVTEFVRLGLLKPI*
Ga0126378_122511641	3300010361	Tropical Forest Soil	MPFTETTRITLEAAEAVNLHTGIVLPPGSYPGIKARAREDALDSGITWSPIRYRIDLTAEQLASMGATVQPNQSSEEIDVTEFVRLGRLKPI*
Ga0126377_100043312	3300010362	Tropical Forest Soil	MPFAETTKITLEATQAVELYKGVILPPGTYPGIKAQAREDALDSGVTWSPIRYRIKFTAEQLASMGAAVQPNQSSEEIDVTEFVRSGLLKPI*
Ga0126377_108355622	3300010362	Tropical Forest Soil	MPFTEATKITLEAAQAVELHAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGATVQPNQSSEEIDVTEFVRLGLLKPV*
Ga0126377_110593422	3300010362	Tropical Forest Soil	MHSAVLASPIKGWPMPFTETGKITLEAAQAVELYKGVVLPPGSYPGIKAQARESALDSGVTWSPIRYRIELTAKQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0126379_134957231	3300010366	Tropical Forest Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGL
Ga0126383_101128173	3300010398	Tropical Forest Soil	MPFAETTKVTLEAAQAVKLHPGIVLPPGSYPGTKARAREDALDGVVTSSPIRYRLELTEEQLVSMGATVQHDLRSEQIDVTEFVRQGQLTIRGGS*
Ga0126383_110825872	3300010398	Tropical Forest Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKAQARESALDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0134122_133497102	3300010400	Terrestrial Soil	DFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEIDVTELVRLGLLKPA*
Ga0138514_1001221251	3300011003	Soil	VLLFTNQEGGPMPFTETTRITLVAAQDVDPHAGIVMPPGTYPDQDADVSYLDGSVNWTPTRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLG
Ga0126375_101457022	3300012948	Tropical Forest Soil	MPFTEMTRITLEAAEAVNLHTGTVLPPGSYPGIKARAREDALDSGITWSPIRYRIALTAEQLASMGATVQPNQSSEEIDVTEFVRLGRLKPI*
Ga0126375_101733771	3300012948	Tropical Forest Soil	MPFTETTKITLEAVRAVELYKGVVLPPGTYPGIKAQAREAALDSAVTWSPIRYRIELTAGQLASMGATVQPNQSSEEIDVTEFVRSGLLKPT*
Ga0164303_100569941	3300012957	Soil	MPFTETTKITLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEIDVTEFVRLGLLKPA*
Ga0126369_115204541	3300012971	Tropical Forest Soil	AAQALELYKGVVLPPGSYPGIKAQARESALDSGVTWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI*
Ga0164309_103805242	3300012984	Soil	MPFTETTQINLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEVDVTELVRLGLLKPA*
Ga0182036_100091364	3300016270	Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI
Ga0182034_100774155	3300016371	Soil	LEAVKAVELYKGVVLPPGSYPGTKTRTRISSMDGGVVWTPTRYRIELKAGQLANMGAATQINLSSEEIDVTAFVRQGQLRFRPRLTQGSVPRWHGGPRR
Ga0182039_102051343	3300016422	Soil	GVVLPPGSYPGTKTRTRISSMDGGVVWTPTRYRIELKAGQLANMGAATQINLSSEEIDVTAFVRQGQLRFRPRLTQGSVPRWHGGPRR
Ga0184611_11802631	3300018067	Groundwater Sediment	AAMATNSAVLASADQEGGPMPFTETKEITLEAAQAIDLDTGIVMPPGSYPGTKTRTRVSYLDGSVNWTPTRYRIELTAKQLASMGATVQPNQSSEEIDVTEFVRLGLLKPA
Ga0184635_102877742	3300018072	Groundwater Sediment	MPFTETKEITLEAAQAIDLDAGIVMPPGSYPGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPA
Ga0184624_102697942	3300018073	Groundwater Sediment	MATNSAVLASADQEGGPMPFTETKEITLEAAQALDLDTGIVMPPGSYPGTKTRTRVSYLDGSVNWTPTRYRIELTAKQLASMGATVQPNQSSEEIDVTEFVRLGLLKPA
Ga0207663_116915681	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	IARVRFGSQADICSANSQCYPCLREGGPMPFTETTKITLVAAQDVDFHAGIVMPPGSYPATKTRTRVNYLDGSVNWTPTRYRIELTAEQLARMGARVQPNQSSEEIDVTELVRLGLLKPA
Ga0209814_100297533	3300027873	Populus Rhizosphere	MPFTETRKITLEAAQAVDLDTGIVVPPGRYPGTKTRTRVSYLDGSINWTPTRYRIELTVEQLASMGATVQPNQSSEEIDVTEFVRLGKLRVA
Ga0209814_100693444	3300027873	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTE
Ga0209814_101742382	3300027873	Populus Rhizosphere	VLASADQEGSPVPFTETKKITLEAAQAVALDTGIVMPPGSYAGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGAAVQPNQSSEEIDVTEFVRLGVLKPA
Ga0209465_104451911	3300027874	Tropical Forest Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRKGLLKLV
Ga0209481_100221114	3300027880	Populus Rhizosphere	MPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPA
Ga0207428_101161144	3300027907	Populus Rhizosphere	MPFTEATKTTLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNWEEIDVTEFVRLGC
Ga0307302_102241021	3300028814	Soil	AQAVDLDTGIVMPPGSYPGTKTRTRVSFLDGSVNWTPTRYRIELTADQLASMGATVQRDQSSEEIDVTGFVRLGLLKPA
Ga0318541_100742774	3300031545	Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQSNQSSEEIDVTEFVRLGLLKPI
Ga0318541_105612252	3300031545	Soil	MPFTETTRITLEAVKAVELYKGVVLPPGSYPGTKTRTRISSMDGGVVWTPTRYRIELKAGQLANMGAATQINLSSEEIDVTAFVRQGQLRFRPRLTQGSVPRWHGGPRR
Ga0310915_107510411	3300031573	Soil	MPFTETTRITLEAVKAVELYKGVVLPPGSYPGTKTRTRISSMDGGVVWTPTRYRIELKAGQLANMGAATQINLSSE
Ga0310917_1000202912	3300031833	Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELAAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI
Ga0318512_103029121	3300031846	Soil	PIKGWPMPFTETTRITLEVAEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQSNQSSEEIDVTEFVRLGLLKPI
Ga0310912_107942361	3300031941	Soil	MPFTETTRITLEAVKAVELYKGVVLPPGSYPGTKTRTRISSMDGGVVWTPTRYRIELKAGQLANMGAATQINLSSEEIDVTAFVRQGQLRF
Ga0310910_108773922	3300031946	Soil	MPFTETTRITLEAVKAVELYKGVVLPPGSYPGTKTRTRISSMDGGVVWTPTRYRIELKAGQLANMGAATQINLSSEEIDVTAFVRQGQLRFR
Ga0310909_102909931	3300031947	Soil	MPFTETTRITLEAVKAVELYKGVVLPPGSYPGTKTRTRISSMDGGVVWTPPRYRIELKAGQLANMGAATQINLSSEEIDVTAFVRQGQLRFRPRLTQGSVPRWHGGPRR
Ga0318549_102688031	3300032041	Soil	AEAVDLHTGIVLPPGSYPGIKARAREDVLDSGITWSPIRYRIELTAEQLASMGATVQSNQSSEEIDVTEFVRLGLLKPI
Ga0307471_1022633092	3300032180	Hardwood Forest Soil	MPFTETTGITLVAVQDVDLHAGIVMPPGSYPGTKTRTRVSYLDGSVNWTPTRYRIELTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPA
Ga0306920_1000256591	3300032261	Soil	MPFTETTRITLEAAEAVDLHTGIVLPPGSYPGIKARAREDALDSGITWSPIRYGIERTAEQLASMGATVQPNQSSEEIDVTEFVRLGLLKPI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences