Metagenome Family F081551

Basic Information
Family ID	F081551
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	63 residues
Representative Sequence	MTNGSGRLLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Number of Associated Samples	102
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.42 %
% of genes near scaffold ends (potentially truncated)	39.47 %
% of genes from short scaffolds (< 2000 bps)	74.56 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (55.263 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.053 % of family members)
Environment Ontology (ENVO)	Unclassified (41.228 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.386 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.61% β-sheet: 0.00% Coil/Unstructured: 48.39%
Feature Viewer

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Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF04545	Sigma70_r4	17.54
PF04542	Sigma70_r2	14.04
PF08281	Sigma70_r4_2	7.02
PF00149	Metallophos	4.39
PF13442	Cytochrome_CBB3	3.51
PF12850	Metallophos_2	1.75
PF13620	CarboxypepD_reg	1.75
PF08309	LVIVD	0.88
PF07219	HemY_N	0.88
PF02945	Endonuclease_7	0.88
PF00437	T2SSE	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	14.04
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	14.04
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	14.04
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	14.04
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.26 %
Unclassified	root	N/A	44.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.26 %
Unclassified	root	N/A	44.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.26 %
Unclassified	root	N/A	44.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.11 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.44 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19.30 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	7.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.89 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.89 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.74 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	7.89 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10187093	Not Available	1062	Open in IMG/M
3300001977\|JGI24746J21847_1054412	Not Available	567	Open in IMG/M
3300001991\|JGI24743J22301_10020789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1251	Open in IMG/M
3300004153\|Ga0063455_100023501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1723	Open in IMG/M
3300004157\|Ga0062590_100158108	Not Available	1566	Open in IMG/M
3300004643\|Ga0062591_100119993	All Organisms → cellular organisms → Bacteria → Proteobacteria	1755	Open in IMG/M
3300005147\|Ga0066821_1002800	Not Available	967	Open in IMG/M
3300005163\|Ga0066823_10133784	Not Available	536	Open in IMG/M
3300005165\|Ga0066869_10002723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2053	Open in IMG/M
3300005169\|Ga0066810_10106833	Not Available	626	Open in IMG/M
3300005185\|Ga0066811_1018447	Not Available	579	Open in IMG/M
3300005328\|Ga0070676_10221594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1250	Open in IMG/M
3300005328\|Ga0070676_11472053	Not Available	524	Open in IMG/M
3300005439\|Ga0070711_100831721	Not Available	785	Open in IMG/M
3300005440\|Ga0070705_100014281	All Organisms → cellular organisms → Bacteria → Proteobacteria	4082	Open in IMG/M
3300005457\|Ga0070662_100719206	Not Available	845	Open in IMG/M
3300005526\|Ga0073909_10245161	Not Available	794	Open in IMG/M
3300005543\|Ga0070672_100053122	All Organisms → cellular organisms → Bacteria → Proteobacteria	3166	Open in IMG/M
3300005614\|Ga0068856_100071791	All Organisms → cellular organisms → Bacteria	3427	Open in IMG/M
3300005614\|Ga0068856_101378832	Not Available	720	Open in IMG/M
3300005719\|Ga0068861_100103373	All Organisms → cellular organisms → Bacteria → Proteobacteria	2270	Open in IMG/M
3300006028\|Ga0070717_11531372	Not Available	605	Open in IMG/M
3300006042\|Ga0075368_10066023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1454	Open in IMG/M
3300006178\|Ga0075367_10732972	Not Available	629	Open in IMG/M
3300006881\|Ga0068865_100057404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2715	Open in IMG/M
3300006914\|Ga0075436_101517527	Not Available	509	Open in IMG/M
3300009156\|Ga0111538_10723220	All Organisms → cellular organisms → Bacteria → Proteobacteria	1261	Open in IMG/M
3300009545\|Ga0105237_10269458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1706	Open in IMG/M
3300009553\|Ga0105249_10444137	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300010371\|Ga0134125_11014972	Not Available	909	Open in IMG/M
3300010375\|Ga0105239_10115840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2973	Open in IMG/M
3300010397\|Ga0134124_12684324	Not Available	541	Open in IMG/M
3300010403\|Ga0134123_11266337	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300011119\|Ga0105246_10145024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1790	Open in IMG/M
3300011119\|Ga0105246_10395285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1146	Open in IMG/M
3300011119\|Ga0105246_10793982	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300012469\|Ga0150984_104792863	Not Available	509	Open in IMG/M
3300012469\|Ga0150984_117153510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	623	Open in IMG/M
3300012895\|Ga0157309_10317835	Not Available	531	Open in IMG/M
3300012901\|Ga0157288_10221970	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300012914\|Ga0157297_10392259	Not Available	553	Open in IMG/M
3300012937\|Ga0162653_100018846	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300012939\|Ga0162650_100081057	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300012951\|Ga0164300_10120165	All Organisms → cellular organisms → Bacteria → Proteobacteria	1186	Open in IMG/M
3300012955\|Ga0164298_10058843	All Organisms → cellular organisms → Bacteria → Proteobacteria	1882	Open in IMG/M
3300012957\|Ga0164303_11380075	Not Available	526	Open in IMG/M
3300012958\|Ga0164299_10266066	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300012961\|Ga0164302_10677365	Not Available	760	Open in IMG/M
3300012988\|Ga0164306_10087750	All Organisms → cellular organisms → Bacteria → Proteobacteria	1996	Open in IMG/M
3300013307\|Ga0157372_10842940	All Organisms → cellular organisms → Bacteria → Proteobacteria	1064	Open in IMG/M
3300013308\|Ga0157375_13741324	Not Available	505	Open in IMG/M
3300014745\|Ga0157377_10042658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2520	Open in IMG/M
3300014968\|Ga0157379_11563624	Not Available	643	Open in IMG/M
3300015371\|Ga0132258_11708569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1587	Open in IMG/M
3300015371\|Ga0132258_12276087	All Organisms → cellular organisms → Bacteria → Proteobacteria	1359	Open in IMG/M
3300015373\|Ga0132257_100689167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1269	Open in IMG/M
3300017792\|Ga0163161_10708379	Not Available	839	Open in IMG/M
3300017792\|Ga0163161_11906872	Not Available	529	Open in IMG/M
3300017965\|Ga0190266_10006260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2758	Open in IMG/M
3300018066\|Ga0184617_1012091	All Organisms → cellular organisms → Bacteria	1754	Open in IMG/M
3300018067\|Ga0184611_1331566	Not Available	524	Open in IMG/M
3300018073\|Ga0184624_10403475	Not Available	606	Open in IMG/M
3300018073\|Ga0184624_10486163	Not Available	538	Open in IMG/M
3300018083\|Ga0184628_10106115	All Organisms → cellular organisms → Bacteria → Proteobacteria	1447	Open in IMG/M
3300018083\|Ga0184628_10485863	Not Available	641	Open in IMG/M
3300018476\|Ga0190274_11492173	Not Available	767	Open in IMG/M
3300018920\|Ga0190273_10247508	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300019876\|Ga0193703_1007127	Not Available	1645	Open in IMG/M
3300025321\|Ga0207656_10075210	All Organisms → cellular organisms → Bacteria → Proteobacteria	1508	Open in IMG/M
3300025900\|Ga0207710_10033454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2255	Open in IMG/M
3300025901\|Ga0207688_10021123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3555	Open in IMG/M
3300025914\|Ga0207671_10101496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2180	Open in IMG/M
3300025918\|Ga0207662_10009594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5333	Open in IMG/M
3300025919\|Ga0207657_10178810	All Organisms → cellular organisms → Bacteria → Proteobacteria	1716	Open in IMG/M
3300025926\|Ga0207659_11053290	Not Available	700	Open in IMG/M
3300025927\|Ga0207687_10289060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1317	Open in IMG/M
3300025931\|Ga0207644_11219183	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300025938\|Ga0207704_11319502	Not Available	617	Open in IMG/M
3300025940\|Ga0207691_10084724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2845	Open in IMG/M
3300025942\|Ga0207689_10141953	All Organisms → cellular organisms → Bacteria → Proteobacteria	1978	Open in IMG/M
3300026035\|Ga0207703_11163362	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300026067\|Ga0207678_10120781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2236	Open in IMG/M
3300026067\|Ga0207678_10165227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1890	Open in IMG/M
3300026075\|Ga0207708_11252140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300026078\|Ga0207702_10040776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3892	Open in IMG/M
3300026089\|Ga0207648_10045622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3844	Open in IMG/M
3300026116\|Ga0207674_10087413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3110	Open in IMG/M
3300026886\|Ga0207982_1004815	Not Available	645	Open in IMG/M
3300027310\|Ga0207983_1000279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5691	Open in IMG/M
3300027866\|Ga0209813_10350401	Not Available	585	Open in IMG/M
3300028708\|Ga0307295_10010235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2207	Open in IMG/M
3300028708\|Ga0307295_10035605	All Organisms → cellular organisms → Bacteria → Proteobacteria	1258	Open in IMG/M
3300028720\|Ga0307317_10065777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1178	Open in IMG/M
3300028721\|Ga0307315_10024744	Not Available	1575	Open in IMG/M
3300028755\|Ga0307316_10198144	Not Available	723	Open in IMG/M
3300028814\|Ga0307302_10416017	Not Available	665	Open in IMG/M
3300028872\|Ga0307314_10079793	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300031199\|Ga0307495_10188596	Not Available	559	Open in IMG/M
3300031740\|Ga0307468_100019498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2952	Open in IMG/M
3300031847\|Ga0310907_10135375	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300031854\|Ga0310904_10571256	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300032000\|Ga0310903_10195378	Not Available	944	Open in IMG/M
3300032000\|Ga0310903_10455452	Not Available	661	Open in IMG/M
3300032075\|Ga0310890_11443256	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300032122\|Ga0310895_10446227	Not Available	642	Open in IMG/M
3300032174\|Ga0307470_10256464	All Organisms → cellular organisms → Bacteria → Proteobacteria	1159	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.39%
Host-Associated	Host-Associated	45.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.12%
Plants	Host-Associated → Plants	45.61%
Aquatic	Environmental → Aquatic	5.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.42%
Sediment	Environmental → Aquatic → Sediment	5.26%
Roots	Host-Associated → Plants → Roots	3.51%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.16%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.53%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.26%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.53%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.14%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.39%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.51%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.51%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.75%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.75%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026886	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB (SPAdes)	Environmental	Open in IMG/M
3300027310	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_101870931	3300001661	Forest Soil	LVIGCVTAILMTAISVSTMDSAVAQSKMGQIGWESLTNRYESPSSETEFSLRLDM*
JGI24746J21847_10544123	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPS
JGI24743J22301_100207894	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAP
Ga0063455_1000235011	3300004153	Soil	MTNSSGRLVIRCAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0062590_1001581083	3300004157	Soil	DMTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0062591_1001199933	3300004643	Soil	MTNGSGRLVIRCIIAILTTVISVGTMDSAVAQSKIGQIGRDGLTNRHEAPSSEIEPLLRLDM*
Ga0066821_10028001	3300005147	Soil	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0066823_101337841	3300005163	Soil	MTNSSGRLVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAP
Ga0066869_100027234	3300005165	Soil	MTNGSGRLLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK*
Ga0066810_101068333	3300005169	Soil	MTNGSGRLLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0066811_10184472	3300005185	Soil	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0070676_102215941	3300005328	Miscanthus Rhizosphere	MTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0070676_114720533	3300005328	Miscanthus Rhizosphere	MTNGSGRLVIRCIIAILTTVISVGTMDSAVAQSKIGQIGRDGLTNRHEAPSSEIEP
Ga0070711_1008317211	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0070705_1000142814	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK*
Ga0070662_1007192061	3300005457	Corn Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLHRLEM*
Ga0073909_102451614	3300005526	Surface Soil	MTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSET
Ga0070672_1000531225	3300005543	Miscanthus Rhizosphere	MTNGSGRLVIRCIVDILTTAISVGTMDSAVAQSRIGQIGRDGLTNRQEAPSSETEPLLRLEK*
Ga0070693_1015873001	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	ILPGAPVASRDWGAFPPDRSGVEGVMTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0068856_1000717915	3300005614	Corn Rhizosphere	MTNSSGRLVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0068856_1013788322	3300005614	Corn Rhizosphere	MKNGSGRLVIRCIIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0068861_1001033731	3300005719	Switchgrass Rhizosphere	MTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK*
Ga0070717_115313721	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RLGRLSADRSVEGVMTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK*
Ga0075368_100660231	3300006042	Populus Endosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAVAQSRVGQIGRDGLTNRHEAPSSE
Ga0075367_107329722	3300006178	Populus Endosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAP
Ga0075370_103512492	3300006353	Populus Endosphere	VTPPGAPVASRDWGAFAGLIWVEGDMTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0068865_1000574043	3300006881	Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK*
Ga0075436_1015175272	3300006914	Populus Rhizosphere	WVEGDMTNSSGRLVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLWLEM*
Ga0111538_107232202	3300009156	Populus Rhizosphere	MKNGSGRLVIRCIIAILTTAISVGTMDSAVAQSKIGQIGRDGLTNRYEAPSSEIEPLLRLDM*
Ga0105237_102694581	3300009545	Corn Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRL
Ga0105249_104441371	3300009553	Switchgrass Rhizosphere	MTDGSGRLVIRCVIAILMTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLR
Ga0134125_110149721	3300010371	Terrestrial Soil	MKNGSGRLVIRCIIAILTTAISVGTMDSAVAQSKIGQIGRDGLTNRHEAPSSEIEPLLRLDM*
Ga0105239_101158405	3300010375	Corn Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0134124_126843241	3300010397	Terrestrial Soil	MTNGSGRLVIRCIVAILTTAISVGTMDSAVAQSKIGQIGRDGLTNRYEAPSSEIEPLLRLEK*
Ga0134123_112663372	3300010403	Terrestrial Soil	MTSGSGRLVIRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0105246_101450243	3300011119	Miscanthus Rhizosphere	MTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETE
Ga0105246_103952851	3300011119	Miscanthus Rhizosphere	MKNGSGRLVIRCIVAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETE
Ga0105246_107939821	3300011119	Miscanthus Rhizosphere	LVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0150984_1047928632	3300012469	Avena Fatua Rhizosphere	TNSSGRLVIRCAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0150984_1171535102	3300012469	Avena Fatua Rhizosphere	MTNGSGRLVIRCVIAILMVAISVGTMDSAVAQSRIGQIGRDGLTNRHEVPSSEIEPLLRLEM*
Ga0157309_103178352	3300012895	Soil	LVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETE
Ga0157288_102219702	3300012901	Soil	IRCIIAILTTVISVGTMDSAVAQSKIGQIGRDGLTNRHEAPSSEIEPLLRLDM*
Ga0157297_103922591	3300012914	Soil	LVIRCIVAILMTAISFATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0162653_1000188462	3300012937	Soil	MTNSSGRLVIRRAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0162650_1000810572	3300012939	Soil	MTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHKAPSSETEPLLRLEM*
Ga0164300_101201652	3300012951	Soil	MTNGSGRLVIRCIVAILTTAISVATMDSAVAQSRIGQIGRDGLTNRHESPSSETELPLWLEM*
Ga0164298_100588432	3300012955	Soil	LVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0164303_113800751	3300012957	Soil	SGVEGVMTNGSGRLLIRCIIAILTPAISVGTMDSAVAQSRIGQIGRDGLTNRHESPSSETELPLWLEM*
Ga0164299_102660662	3300012958	Soil	MTNGSGRLLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDVLTNRHEAPSSETEPLLRLEM*
Ga0164301_107437731	3300012960	Soil	RDWGAFPPDRSGVEGVMTNGSGRLVIRCIVAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHESPSSETELPLWLEM*
Ga0164302_106773652	3300012961	Soil	MTNGSGRLVIRCIVAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHESPSSETELPLWLEM*
Ga0164306_100877501	3300012988	Soil	LVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0157372_108429401	3300013307	Corn Rhizosphere	MTNGSGRLVVRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSEPEPLLRLDM*
Ga0157375_137413242	3300013308	Miscanthus Rhizosphere	CIIAILTTVISVGTMDTAVAQAKIGQIWRDGLTNSHESTSSEIEPLLRLDM*
Ga0157377_100426584	3300014745	Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK*
Ga0157379_115636243	3300014968	Switchgrass Rhizosphere	MTDGSGRLVIRCVIAILMTAISIGTMDSAVALSRIGQIGRDGLTNRHEAPSSETEPLLRLEM*
Ga0132258_117085692	3300015371	Arabidopsis Rhizosphere	MTSGSGRLVIRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0132258_122760872	3300015371	Arabidopsis Rhizosphere	VEGVMTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM*
Ga0132257_1006891671	3300015373	Arabidopsis Rhizosphere	MTNGSGRLVIRCIVAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHESPSSETDLPLWLEM*
Ga0163161_107083791	3300017792	Switchgrass Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0163161_119068721	3300017792	Switchgrass Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0190266_100062603	3300017965	Soil	MTNSSERLVIRCIVAISMTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0184617_10120913	3300018066	Groundwater Sediment	MTNGSGRLVVRCIVAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0184611_13315661	3300018067	Groundwater Sediment	IRCIVAILTTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0184624_104034752	3300018073	Groundwater Sediment	RLGRLSADRSVEGVMTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0184624_104861632	3300018073	Groundwater Sediment	MTNGSGRLVVRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRL
Ga0184628_101061151	3300018083	Groundwater Sediment	MTKRSGRLVIRCIVAISMTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0184628_104858631	3300018083	Groundwater Sediment	MTSGSGRLVIRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0190274_114921732	3300018476	Soil	MTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0190273_102475082	3300018920	Soil	VIRCVIAILMTAISIGTMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0190267_100806672	3300019767	Soil	PPGAPVASRDWGAFAGLIWVEGDMTNSSERLVIRCIVAILTTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0193703_10071272	3300019876	Soil	MTKRSGRLVIRCIVAISMTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLLLEM
Ga0207656_100752102	3300025321	Corn Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0207710_100334544	3300025900	Switchgrass Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207688_100211235	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTNSSGRLVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0207671_101014964	3300025914	Corn Rhizosphere	SGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0207662_100095941	3300025918	Switchgrass Rhizosphere	MKNGSGRLVIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207657_101788102	3300025919	Corn Rhizosphere	MTSGSGRLVIRCVIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0207659_110532901	3300025926	Miscanthus Rhizosphere	MTNGSGRLLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207687_102890601	3300025927	Miscanthus Rhizosphere	VMTSGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207644_112191831	3300025931	Switchgrass Rhizosphere	LSADRSVEGVMTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0207704_113195023	3300025938	Miscanthus Rhizosphere	MTNGSGRLVIRCIIAILTTVISVGTMDSAVAQSKIGQIGRDGLTNRHEAPSSEIEPLL
Ga0207691_100847243	3300025940	Miscanthus Rhizosphere	MTSGSGRLLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207689_101419532	3300025942	Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207677_102977113	3300026023	Miscanthus Rhizosphere	VTSPGAPVAICDWGAFSPDRSGVEGVMTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207703_111633622	3300026035	Switchgrass Rhizosphere	ARLGRLSADRSVEGVMTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0207678_101207811	3300026067	Corn Rhizosphere	LLIRCIIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207678_101652274	3300026067	Corn Rhizosphere	MTNGSGRLVIRCIIAILTTVISVGTMDSAVAQSKIGQIGRDGLTNRHEAPSSEIEPLLRLDM
Ga0207708_112521402	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSFWQLVIGCVIAILTTAITLSAMGSAVAQSRVGQIGWDGLTNRHESPSSETEQSL
Ga0207702_100407765	3300026078	Corn Rhizosphere	MTNSSGRLVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0207648_100456221	3300026089	Miscanthus Rhizosphere	MTSGSGRLVIRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRL
Ga0207676_110039852	3300026095	Switchgrass Rhizosphere	VTPPGAPVASRDWGASAGLIWVEGDMTNSSGRLVIRCIVAILMTAISVATMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0207674_100874136	3300026116	Corn Rhizosphere	MTSGSGRLVIRCVIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207982_10048152	3300026886	Soil	DRSVEGVMTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0207983_10002794	3300027310	Soil	MTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRIEK
Ga0209813_103504012	3300027866	Populus Endosphere	MTNSSGRLVIRCIVAILMTAIGVATMDGAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307295_100102354	3300028708	Soil	MTKRSGRLVIRCIVAISMTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307295_100356052	3300028708	Soil	MTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307317_100657772	3300028720	Soil	MTNSSGRLVIRCAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307315_100247441	3300028721	Soil	MTNSSGRLVIRRAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307316_101981443	3300028755	Soil	MTKRSGRLVIRCIVAISMTAISIGAMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307302_104160171	3300028814	Soil	MTSGSGRLVIRCVIAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPS
Ga0307310_101413183	3300028824	Soil	VTPPGAPVASRDWGAFAGLIWVEGDMTNSSGRLVIRRAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307314_100797932	3300028872	Soil	DWGAFAGLIWVEGDMTNSSGRLVIRRAIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0307495_101885961	3300031199	Soil	RLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0307468_1000194983	3300031740	Hardwood Forest Soil	MTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0310907_101353752	3300031847	Soil	DRSVEGVMTSGSGRLVIRCVIAILTTAISIGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0310904_105712562	3300031854	Soil	TSDSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLD
Ga0310903_101953782	3300032000	Soil	IRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0310903_104554523	3300032000	Soil	MTSGSGRLVIRCVIAILTTAISIGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPL
Ga0310890_114432561	3300032075	Soil	GAFSPDRSSVEGVMTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEM
Ga0310895_104462272	3300032122	Soil	MTNGSGRLVIRCIVAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM
Ga0307470_102564643	3300032174	Hardwood Forest Soil	MTNGSGRLVIRCIVAILTTAISVGTMDSAVAQSRIGQIGRDGLTNRHEAPSSETEPLLRLEK
Ga0247829_105736941	3300033550	Soil	RKGAPVAICDWGAFSPDRSGVEGVMTNGSGRLLIRCIIAILTTAISVGTMDSAIAQSRIGQIGRDGLTNRHEAPSSETEPLLRLDM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081551

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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