Metagenome / Metatranscriptome Family F081565

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081565
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	52 residues
Representative Sequence	MNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Number of Associated Samples	78
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.58 %
% of genes near scaffold ends (potentially truncated)	22.81 %
% of genes from short scaffolds (< 2000 bps)	89.47 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.912 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.088 % of family members)
Environment Ontology (ENVO)	Unclassified (29.825 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.175 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 10.26% β-sheet: 0.00% Coil/Unstructured: 89.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF03779	SPW	3.51
PF01068	DNA_ligase_A_M	2.63
PF13505	OMP_b-brl	1.75
PF01381	HTH_3	1.75
PF04392	ABC_sub_bind	1.75
PF01609	DDE_Tnp_1	1.75
PF01145	Band_7	1.75
PF00005	ABC_tran	1.75
PF06080	DUF938	0.88
PF01565	FAD_binding_4	0.88
PF00583	Acetyltransf_1	0.88
PF00211	Guanylate_cyc	0.88
PF09361	Phasin_2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	2.63
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.63
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.75
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.75
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.75
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.75
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.75
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.75
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.75
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
All Organisms	root	All Organisms	35.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
cellular organisms	root	All Organisms → cellular organisms	35.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.07 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.44 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.53 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.88 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.39 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.75 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.39 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	1.75 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.75 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.75 %
Bradyrhizobium uaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	0.88 %
Phenylobacterium soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium soli	0.88 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.91 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	1.75 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1.75 %
Bradyrhizobium uaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	0.88 %
Phenylobacterium soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium soli	0.88 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.88 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.88 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10002396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5131	Open in IMG/M
3300003505\|JGIcombinedJ51221_10222466	Not Available	766	Open in IMG/M
3300004091\|Ga0062387_100835111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	690	Open in IMG/M
3300004463\|Ga0063356_102821457	Not Available	748	Open in IMG/M
3300005169\|Ga0066810_10171572	Not Available	530	Open in IMG/M
3300005331\|Ga0070670_101501302	Not Available	619	Open in IMG/M
3300005332\|Ga0066388_101750935	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300005602\|Ga0070762_10248560	Not Available	1105	Open in IMG/M
3300005602\|Ga0070762_10283122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium uaiense	1040	Open in IMG/M
3300005764\|Ga0066903_104106935	Not Available	780	Open in IMG/M
3300005764\|Ga0066903_106706864	Not Available	599	Open in IMG/M
3300006041\|Ga0075023_100031642	Not Available	1560	Open in IMG/M
3300006047\|Ga0075024_100631788	Not Available	580	Open in IMG/M
3300006052\|Ga0075029_100159261	Not Available	1392	Open in IMG/M
3300006052\|Ga0075029_100343560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	960	Open in IMG/M
3300006057\|Ga0075026_100064042	Not Available	1761	Open in IMG/M
3300006057\|Ga0075026_100159800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300006059\|Ga0075017_101043051	Not Available	637	Open in IMG/M
3300006102\|Ga0075015_100062538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1791	Open in IMG/M
3300006162\|Ga0075030_101490035	Not Available	530	Open in IMG/M
3300006176\|Ga0070765_101424941	Not Available	653	Open in IMG/M
3300006176\|Ga0070765_102087399	Not Available	529	Open in IMG/M
3300006854\|Ga0075425_101829129	Not Available	681	Open in IMG/M
3300006893\|Ga0073928_10053238	All Organisms → cellular organisms → Bacteria → Proteobacteria	3632	Open in IMG/M
3300006893\|Ga0073928_10269807	Not Available	1292	Open in IMG/M
3300007982\|Ga0102924_1120204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → Phenylobacterium soli	1276	Open in IMG/M
3300007982\|Ga0102924_1148053	Not Available	1089	Open in IMG/M
3300009522\|Ga0116218_1563500	Not Available	506	Open in IMG/M
3300009553\|Ga0105249_10590808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1164	Open in IMG/M
3300009683\|Ga0116224_10241880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300009700\|Ga0116217_10244102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300010379\|Ga0136449_100999946	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300010379\|Ga0136449_102187460	Not Available	807	Open in IMG/M
3300010379\|Ga0136449_102399060	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300011404\|Ga0153951_1112917	Not Available	516	Open in IMG/M
3300012089\|Ga0153924_1028930	Not Available	1093	Open in IMG/M
3300012957\|Ga0164303_10222894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1061	Open in IMG/M
3300012961\|Ga0164302_10921998	Not Available	673	Open in IMG/M
3300015373\|Ga0132257_102166358	Not Available	719	Open in IMG/M
3300016319\|Ga0182033_11867587	Not Available	546	Open in IMG/M
3300016445\|Ga0182038_10379568	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300017955\|Ga0187817_10962301	Not Available	547	Open in IMG/M
3300017955\|Ga0187817_11111591	Not Available	507	Open in IMG/M
3300018006\|Ga0187804_10569059	Not Available	513	Open in IMG/M
3300020579\|Ga0210407_10053524	Not Available	3017	Open in IMG/M
3300020579\|Ga0210407_10148746	Not Available	1804	Open in IMG/M
3300020579\|Ga0210407_10223359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1465	Open in IMG/M
3300020579\|Ga0210407_10362205	Not Available	1134	Open in IMG/M
3300020579\|Ga0210407_10761917	Not Available	748	Open in IMG/M
3300020580\|Ga0210403_10758954	Not Available	774	Open in IMG/M
3300020581\|Ga0210399_10566059	Not Available	941	Open in IMG/M
3300020582\|Ga0210395_10915667	Not Available	651	Open in IMG/M
3300020583\|Ga0210401_10546195	Not Available	1021	Open in IMG/M
3300021088\|Ga0210404_10033701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2313	Open in IMG/M
3300021168\|Ga0210406_10338186	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300021168\|Ga0210406_10504156	Not Available	956	Open in IMG/M
3300021168\|Ga0210406_11070729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	595	Open in IMG/M
3300021170\|Ga0210400_11480301	Not Available	539	Open in IMG/M
3300021171\|Ga0210405_10710658	Not Available	776	Open in IMG/M
3300021178\|Ga0210408_10560548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	906	Open in IMG/M
3300021178\|Ga0210408_10579431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300021178\|Ga0210408_11055405	Not Available	627	Open in IMG/M
3300021178\|Ga0210408_11148383	Not Available	595	Open in IMG/M
3300021180\|Ga0210396_10070985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3169	Open in IMG/M
3300021401\|Ga0210393_10530887	Not Available	961	Open in IMG/M
3300021403\|Ga0210397_10003933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9135	Open in IMG/M
3300021405\|Ga0210387_10706029	Not Available	894	Open in IMG/M
3300021420\|Ga0210394_10091299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2632	Open in IMG/M
3300021420\|Ga0210394_10914668	Not Available	763	Open in IMG/M
3300021432\|Ga0210384_10082520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2890	Open in IMG/M
3300021432\|Ga0210384_10492644	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300021433\|Ga0210391_10858594	Not Available	709	Open in IMG/M
3300021433\|Ga0210391_11074372	Not Available	625	Open in IMG/M
3300021478\|Ga0210402_10223809	Not Available	1733	Open in IMG/M
3300021559\|Ga0210409_10479900	Not Available	1106	Open in IMG/M
3300021559\|Ga0210409_11488556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300022507\|Ga0222729_1002262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1572	Open in IMG/M
3300022508\|Ga0222728_1114495	Not Available	523	Open in IMG/M
3300022525\|Ga0242656_1116405	Not Available	537	Open in IMG/M
3300022533\|Ga0242662_10183684	Not Available	650	Open in IMG/M
3300022557\|Ga0212123_10016068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9211	Open in IMG/M
3300022557\|Ga0212123_10650682	Not Available	656	Open in IMG/M
3300022712\|Ga0242653_1104141	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300022722\|Ga0242657_1093011	Not Available	732	Open in IMG/M
3300022726\|Ga0242654_10213098	Not Available	677	Open in IMG/M
3300025320\|Ga0209171_10045336	All Organisms → cellular organisms → Bacteria → Proteobacteria	2994	Open in IMG/M
3300025925\|Ga0207650_11445172	Not Available	585	Open in IMG/M
3300025945\|Ga0207679_10498343	Not Available	1086	Open in IMG/M
3300027568\|Ga0208042_1127404	Not Available	641	Open in IMG/M
3300027889\|Ga0209380_10714863	Not Available	574	Open in IMG/M
3300027910\|Ga0209583_10067997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	1299	Open in IMG/M
3300027911\|Ga0209698_10995599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300028906\|Ga0308309_10849139	Not Available	793	Open in IMG/M
3300028906\|Ga0308309_10935858	Not Available	752	Open in IMG/M
3300028906\|Ga0308309_11179016	Not Available	661	Open in IMG/M
3300030707\|Ga0310038_10141602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300030707\|Ga0310038_10454781	Not Available	548	Open in IMG/M
3300031231\|Ga0170824_124907594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1687	Open in IMG/M
3300031446\|Ga0170820_11909954	Not Available	1261	Open in IMG/M
3300031708\|Ga0310686_101200983	Not Available	720	Open in IMG/M
3300031708\|Ga0310686_102917643	Not Available	769	Open in IMG/M
3300031708\|Ga0310686_105490850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1321	Open in IMG/M
3300031708\|Ga0310686_110362230	Not Available	1148	Open in IMG/M
3300031708\|Ga0310686_110742440	Not Available	523	Open in IMG/M
3300031708\|Ga0310686_114751050	All Organisms → cellular organisms → Bacteria → Proteobacteria	1248	Open in IMG/M
3300031910\|Ga0306923_11981867	Not Available	592	Open in IMG/M
3300031910\|Ga0306923_12566376	Not Available	501	Open in IMG/M
3300031954\|Ga0306926_12291196	Not Available	599	Open in IMG/M
3300032160\|Ga0311301_10179123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3711	Open in IMG/M
3300032180\|Ga0307471_103179749	Not Available	582	Open in IMG/M
3300032261\|Ga0306920_100401265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2039	Open in IMG/M
3300032261\|Ga0306920_100804302	Not Available	1380	Open in IMG/M
3300032261\|Ga0306920_103757177	Not Available	556	Open in IMG/M
3300033289\|Ga0310914_11755032	Not Available	525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.11%
Host-Associated	Host-Associated	7.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.81%
Aquatic	Environmental → Aquatic	19.30%
Plants	Host-Associated → Plants	6.14%
Fungi	Host-Associated → Fungi	1.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.81%
Sediment	Environmental → Aquatic → Sediment	9.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	6.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.39%
Freshwater	Environmental → Aquatic → Freshwater	3.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.75%
Mycelium	Host-Associated → Fungi → Mycelium	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.40%
Loam	Environmental → Terrestrial → Soil → Loam	11.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	6.14%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.51%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.65%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	6.14%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.09%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.02%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.02%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	6.14%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011404	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG	Host-Associated	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100023961	3300003505	Forest Soil	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
JGIcombinedJ51221_102224661	3300003505	Forest Soil	MNHVTAELDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC*
Ga0062387_1008351112	3300004091	Bog Forest Soil	MNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
Ga0063356_1028214571	3300004463	Arabidopsis Thaliana Rhizosphere	MNHATNFTAELDQTDEDVLHEVSDEALEAAASANGGGQCLVTVGPTVMVGGCC*
Ga0066810_101715722	3300005169	Soil	VNHSTAELDQTDEDFFCEVSDETLEAAAGTPVRGQAMVTVGPTILIGGCCGLGKLKP
Ga0070670_1015013021	3300005331	Switchgrass Rhizosphere	MNHATNFTAELDQTDEDVLHEVSDEALEAVASANGGGQCLVTVGPTVMVGGCC*
Ga0066388_1017509351	3300005332	Tropical Forest Soil	MDHSANVTAELDQTDEAIHCEVSDEALEVAAGAYIEGQFMVTVGPTIMVGGCC*
Ga0070762_102485602	3300005602	Soil	MNHVTAELDQTDEDILNEVSDETREAAAGTPIGGQAMVTVGPTILIGGCC*
Ga0070762_102831221	3300005602	Soil	MNHSTNSTAELDQTDKDFFCEVSDETLEAAAGADVEGQWIVTVGPTIIVGGCC*
Ga0066903_1041069352	3300005764	Tropical Forest Soil	MNNTTNFTAELDQTDEDVLHEVSDEALEAAAGASAGGQCLVTVGPTVMVGGCC*
Ga0066903_1067068641	3300005764	Tropical Forest Soil	MEGAIAMNHGTYLTAEIDQTDEDILSDEVSDETLKAAAGKRIGDQAMVTVGPTILIGSCC
Ga0075023_1000316423	3300006041	Watersheds	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTIMIGGCC*
Ga0075024_1006317882	3300006047	Watersheds	MNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
Ga0075029_1001592611	3300006052	Watersheds	ISMNHSTNSTAELDQIDDDFLYEVSDETLEAAADADIGGRAMVTVGPTILIGGCC*
Ga0075029_1003435602	3300006052	Watersheds	MNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC*
Ga0075026_1000640424	3300006057	Watersheds	KRRGVVSMNHSTNSAAELDQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTTMIGGCC
Ga0075026_1001598003	3300006057	Watersheds	MNHSTNSNAELDQIDDDVLDEVSDETLEAAGADIGGQALVTVGPTIIIGGCC*
Ga0075017_1010430512	3300006059	Watersheds	MNCSTNFTDELDQTDEDILYEVSDETLEAATGIYIGEQSMMTIGPTIMMGGCC*
Ga0075015_1000625382	3300006102	Watersheds	VNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC*
Ga0075030_1014900352	3300006162	Watersheds	VNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
Ga0070765_1014249412	3300006176	Soil	MNHVTAELDQTDEDILNEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC*
Ga0070765_1020873992	3300006176	Soil	MNHSTNSTAELDQIDDDFLYEVSDETLEAAADADIGGRAMVTVGPTILIGGCC*
Ga0075425_1018291291	3300006854	Populus Rhizosphere	MDHSANVTAELDQADEAILCEVSDEALEVAAGACIEGQSMVTVGPTIMVGGCC*
Ga0073928_100532385	3300006893	Iron-Sulfur Acid Spring	MNHNTNFTAELAQTDEDILCEVSDETLEAAAGTYIGEQSMMTIGPTIMMGGCC*
Ga0073928_102698071	3300006893	Iron-Sulfur Acid Spring	AAELDQTNEDFFCEVSDETLEEAAGIPIGGQAMVTVGPTIMIGGCC*
Ga0102924_11202041	3300007982	Iron-Sulfur Acid Spring	MNHNTNFTAELAQTDEDILYEVSDETLEAAAGTYIGEQSMMTIGPTIMMGGCC*
Ga0102924_11480532	3300007982	Iron-Sulfur Acid Spring	MNHITAELDQTDEDILNEVSDETLETAAGTYIGGQFMMTGGPTIMMGGCC*
Ga0116218_15635001	3300009522	Peatlands Soil	MNHITAELDQTEEDILNEVSDETLEAAADTYIGGQFMVTIGPTIMVGGCC*
Ga0105249_105908082	3300009553	Switchgrass Rhizosphere	MNHATNFTAELDQTDEDVLHEVSDEALEAAAGANGGGQRLVTVGPTVMVGGCC*
Ga0116224_102418802	3300009683	Peatlands Soil	ELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC*
Ga0116217_102441022	3300009700	Peatlands Soil	MNHSTAELDRTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
Ga0136449_1009999461	3300010379	Peatlands Soil	AELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
Ga0136449_1021874601	3300010379	Peatlands Soil	MNHVTAEPDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC*
Ga0136449_1023990601	3300010379	Peatlands Soil	MNRSTNSTAELDQTGEDFFCEVSDETLEAAAGADIEGQCIVTVGPTIIVGGCC*
Ga0153951_11129171	3300011404	Attine Ant Fungus Gardens	MNDSTDFAAELDQTDDDILYEVSDETLEAAAGACIEGQCLVTIGPTVMMGGCC*
Ga0153924_10289303	3300012089	Attine Ant Fungus Gardens	MNHSTAAELGQTNEDIVYEVSDETLEAAAGAHVESQAMMTVGPTIMMGGCC*
Ga0164303_102228942	3300012957	Soil	MNHSTATAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC*
Ga0164302_109219981	3300012961	Soil	MNHVTAELDQTDEDFFCEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC*
Ga0132257_1021663583	3300015373	Arabidopsis Rhizosphere	MNRSTDSAAEFDQSDDQVFFYDASDETLEAAAGIEGHSLVTIGPTIMVGGCC*
Ga0182033_118675871	3300016319	Soil	MNHSINVAAELDETDEDILHEVSDETLEAAAGKRIGDQAMVTVGPTILIGSCC
Ga0182038_103795681	3300016445	Soil	MNHSTTFTAEIDQTDEDILSDEVSDETLEAAAGKRIGDQAMVTVGPTILIGSCC
Ga0187817_109623011	3300017955	Freshwater Sediment	VNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGP
Ga0187817_111115912	3300017955	Freshwater Sediment	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTIMIGGCC
Ga0187804_105690592	3300018006	Freshwater Sediment	MNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210407_100535247	3300020579	Soil	MNHNTAELDQTDEDFFCEVSDETLEAATGTYIGGQFMVTIGPTIMVGGCC
Ga0210407_101487462	3300020579	Soil	MNHSTNSAAELGQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTTMIGGCC
Ga0210407_102233591	3300020579	Soil	MNQSTEFAAELDQSDEGVFYEASDETLEAAAGIEDHSLVTIGPTIMVGGCC
Ga0210407_103622053	3300020579	Soil	MNHSTNSTAELDQIDDDFLYEVSDETLEAAADADIGGRAMVTVGPTILIGGCC
Ga0210407_107619171	3300020579	Soil	MNQSTAELDQTDEDFFCEVSDETLEAAARTPIGGQAMVTVGPTIMIGGCC
Ga0210403_107589541	3300020580	Soil	MNHVTAELDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC
Ga0210399_105660591	3300020581	Soil	MNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210395_109156672	3300020582	Soil	TNSAAELDQTNEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210401_105461952	3300020583	Soil	MNHNTAELDQTDEDFFCEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC
Ga0210404_100337015	3300021088	Soil	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210406_103381863	3300021168	Soil	MNHSTAELDQTDEDFLCEVSDETLEAAAGTPIGGQAMLTVAPTILIGGCC
Ga0210406_105041561	3300021168	Soil	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGVLLTWGWLGAGG
Ga0210406_110707291	3300021168	Soil	CVSNNGVAAMNHVTAELDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC
Ga0210400_114803011	3300021170	Soil	MNHNTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210405_107106582	3300021171	Soil	MNHSTNYTAELDQTDKDFFCEVSVETLEAAAGADVEGQWIVTVGPTIIVGGCC
Ga0210408_105605482	3300021178	Soil	MNHVTAELDQTDEDILNDVSDDTLEAAAGTYIGGQFMMTIGPTIMMGGCC
Ga0210408_105794313	3300021178	Soil	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPT
Ga0210408_110554052	3300021178	Soil	MNHSTNSAAELDQIDDDVLYEVSDETLEAAAGADIEGQCIVTVGPTIIVGGCC
Ga0210408_111483831	3300021178	Soil	MNHSTNSTAELDQTDEDFFCEVSDEALEAAAGADVEGQCIVTVGPTIIVGGCC
Ga0210396_100709852	3300021180	Soil	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTTMIGGCC
Ga0210393_105308871	3300021401	Soil	AAAFSKRRGVVSMNHSTNSAAELDQTNEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTTMIGGCC
Ga0210397_100039338	3300021403	Soil	LDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC
Ga0210387_107060291	3300021405	Soil	MNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMVGGCC
Ga0210394_100912991	3300021420	Soil	MNHSTNSAAELDQTNEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGVLLTWGW
Ga0210394_109146682	3300021420	Soil	MNHSTNSAAELDQTNEDFFCEVSDETFEAAAGIPIGGQAMVTVGPRS
Ga0210384_100825204	3300021432	Soil	MRPRRIAANILLQLMNHSTAELDQTDEDFSCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210384_104926441	3300021432	Soil	GVAAMNHVTAELDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC
Ga0210391_108585942	3300021433	Soil	VNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC
Ga0210391_110743721	3300021433	Soil	TDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0210402_102238092	3300021478	Soil	MNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQGMVTVGPTIMIGGCC
Ga0210409_104799002	3300021559	Soil	MNHSTNYTAELDQTDEDFFCEVSDEALETAAGADIEGQCIVTVGPTIIVGGCC
Ga0210409_114885562	3300021559	Soil	HSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0222729_10022621	3300022507	Soil	MNHVTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0222728_11144951	3300022508	Soil	MMPRARLRGNLVNQSTAELDQTDEDFFCEVSDETLEAATGTYIGGQFMVTIGPTIMVGGC
Ga0242656_11164051	3300022525	Soil	MNHVTAEPDQTDEDILNEVSDETLEAAAGTYIGGQFMVTIGPTIMVGGCC
Ga0242662_101836841	3300022533	Soil	MNQSTEFAAELDQSDEGVFYEASDETLEAAAGIEHHSLVTIGPTIMVGGCC
Ga0212123_1001606815	3300022557	Iron-Sulfur Acid Spring	MNHNTNFTAELAQTDEDILCEVSDETLEAAAGTYIGEQSMMTIGPTIMMGGCC
Ga0212123_106506821	3300022557	Iron-Sulfur Acid Spring	MNHITAELDQTDEDILNEVSDETLETAAGTYIGGQFMMTGGPT
Ga0242653_11041412	3300022712	Soil	MNHSTNSAAELDQTDEDFFCEVSDETLEAAARTYIGGQFMVTIGPTIMVGGCC
Ga0242657_10930112	3300022722	Soil	MNHSTNFTAELDQIDDDFLYEVSDETLEAAADADIGGRAMVTVGPTILIGGCC
Ga0242654_102130982	3300022726	Soil	VNQSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGSADLGI
Ga0209171_100453364	3300025320	Iron-Sulfur Acid Spring	MNHNTNFTAELAQTDEDILYEVSDETLEAAAGTYIGEQSMMTIGPTIMMGGCC
Ga0207650_114451721	3300025925	Switchgrass Rhizosphere	MNHATNFTAELDQTDEDVLHEVSDEALEAVASANGGGQCLVTVGPTVMVGGCC
Ga0207679_104983432	3300025945	Corn Rhizosphere	MNHNATFAAEVDQTAEDLLYEVSDETLEAAAGTCMGGHAMVTVGPTVMVGGCC
Ga0208042_11274041	3300027568	Peatlands Soil	MNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC
Ga0209380_107148631	3300027889	Soil	MNHVTAELDQTDEDILNEVSDETREAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0209583_100679972	3300027910	Watersheds	VNHSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0209698_109955991	3300027911	Watersheds	AKRGNLMNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC
Ga0308309_108491392	3300028906	Soil	MNHSTNSTAELDQTDKDFFCEVSDETLEAAAGADVEGQWIVTVGPTIIVGGCC
Ga0308309_109358583	3300028906	Soil	MNHSTAELDQTDEDFLCDVSDETLEAAAGTPIGGQAMLTVAPTILIGGCC
Ga0308309_111790162	3300028906	Soil	MNHVTAELDQTDEDILNEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC
Ga0310038_101416022	3300030707	Peatlands Soil	MNYSTAELDQTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTILIGGCC
Ga0310038_104547811	3300030707	Peatlands Soil	MNHSTAELDRTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0170824_1249075942	3300031231	Forest Soil	MTHSTAELDQTDEDILNEVSDETLEAAAGAYIGGQFMMTVGPTIMMGGCC
Ga0170820_119099541	3300031446	Forest Soil	MNHSAAKLDQTDEDILNEVSDETLEAAAGAYIGGQFMMTVGPTIMMGGCC
Ga0310686_1012009831	3300031708	Soil	MNHSTATAELDQTDEDFFCEVSDETLEAAAGIPIGGQAMVTVGPTIIIGGCC
Ga0310686_1029176431	3300031708	Soil	VNHSTNFTAELDQTDEDILYEVSDETLEAAAGTYVGGQFIMTVGPTIMMGGCC
Ga0310686_1054908502	3300031708	Soil	MNQSTAELDRTDEDFFCEVSDETLEAAAGTPIGGQAMVTVGPTIMIGGCC
Ga0310686_1103622303	3300031708	Soil	MGHSTKLTTELDQTDEDVFNEVSDETLEAAAGIGGQSLVTIGPTIMVGGCC
Ga0310686_1107424401	3300031708	Soil	MNHSTNSNAELDQIDDDVLDEVSDETLEAAAGADIEGQCIVTVGPTIIVGGCC
Ga0310686_1147510502	3300031708	Soil	MNCSTNFTDELDQTDEDILYEVSDETLEAATGIYIGEQSMMTIGPTIMMGGCC
Ga0306923_119818671	3300031910	Soil	MNHSTNVAAELDETDEDILCEVSDETLEAAAGKRIGDQAMVTVGPTILIGSCC
Ga0306923_125663761	3300031910	Soil	MNHSTDFAAKLDQTDDDILYEVSDETLEAAAGKRIGDQAMVTVGPTILIGSCCLTWGADPHP
Ga0306926_122911961	3300031954	Soil	MEGVIAMNHGTHLTAEIDQTDEDILSDEVSDETLEAAAGKRIGDQAMVTVGPTILVGSCC
Ga0311301_101791236	3300032160	Peatlands Soil	MNHITAELDQTEEDILNEVSDETLEAAADTYIGGQFMVTIGPTIMVGGCC
Ga0307471_1031797491	3300032180	Hardwood Forest Soil	MNHSTATAELDQTDEDFFCEVSDETLEAAAGTPIGGQGMVTVGPTIMIGGCC
Ga0306920_1004012652	3300032261	Soil	MNHSTDFAAKLDQTDDDILYEVSDETLEAAAGASVEGRCRVTIGPTVMMGGCC
Ga0306920_1008043023	3300032261	Soil	PDRTDEDIVYEVSDEILEAAASNHIGGQAMLTVGPTILIGGCC
Ga0306920_1037571771	3300032261	Soil	GIISMNHKTNAGAEFGQTDEDIFYEVSDEALEAAAGNRIGGPAMVTVGPTIMIGGCC
Ga0310914_117550321	3300033289	Soil	MNHSTDFAAKLDQTDDDILYEVSDETLEAAAGASVEGRCRVTIGPTVM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081565

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences