Metagenome Family F081815

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081815
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	69 residues
Representative Sequence	VRNSPSFQKSIDHGHHVIELHAWRRPEGTSFATFIYEKAAERLLRHFTGSDENEVIRQALMWCEEN
Number of Associated Samples	66
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	35.09 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	73.68 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.789 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.474 % of family members)
Environment Ontology (ENVO)	Unclassified (42.105 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.263 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.89% β-sheet: 37.23% Coil/Unstructured: 47.87%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.2.1.0: automated matches	d5yu3a_	5yu3	0.67147
d.107.1.1: Ran-binding protein mog1p	d1jhsa_	1jhs	0.66699
b.69.15.1: RPE65-like	d4ou9a_	4ou9	0.66039
c.51.2.1: TolB, N-terminal domain	d2hqsa2	2hqs	0.65999
e.3.1.1: beta-Lactamase/D-ala carboxypeptidase	d2v2ff_	2v2f	0.65975

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF05977	MFS_3	5.26
PF00072	Response_reg	2.63
PF13561	adh_short_C2	2.63
PF16234	DUF4892	1.75
PF02577	BFN_dom	1.75
PF00106	adh_short	0.88
PF00201	UDPGT	0.88
PF03797	Autotransporter	0.88
PF13115	YtkA	0.88
PF05235	CHAD	0.88
PF03459	TOBE	0.88
PF00392	GntR	0.88
PF00389	2-Hacid_dh	0.88
PF00355	Rieske	0.88
PF00144	Beta-lactamase	0.88
PF13414	TPR_11	0.88
PF01526	DDE_Tnp_Tn3	0.88
PF10282	Lactonase	0.88
PF14020	DUF4236	0.88
PF11396	PepSY_like	0.88
PF07311	Dodecin	0.88
PF00171	Aldedh	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	5.26
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	1.75
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.75
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.88
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.88
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.88
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.88
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.88
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
All Organisms	root	All Organisms	34.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
cellular organisms	root	All Organisms → cellular organisms	34.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.63 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.63 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.75 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.88 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.88 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.88 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.88 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Acaryochloridaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae	0.88 %
Siccirubricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	0.88 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.88 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Acaryochloris	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris	0.88 %
Siccirubricoccus soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	0.88 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.88 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
unclassified Acaryochloris	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris	0.88 %
Siccirubricoccus soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	0.88 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.88 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.53 %
Acaryochloris sp. CCMEE 5410	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410	0.88 %
Siccirubricoccus soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	0.88 %
Lachnospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	0.88 %
Bacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16611814	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300000955\|JGI1027J12803_100828856	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300000955\|JGI1027J12803_101520211	Not Available	546	Open in IMG/M
3300000955\|JGI1027J12803_103661153	Not Available	666	Open in IMG/M
3300001164\|JGI11823J13286_1007058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	779	Open in IMG/M
3300001369\|JGI12701J14581_1009734	Not Available	649	Open in IMG/M
3300001545\|JGI12630J15595_10004886	All Organisms → cellular organisms → Bacteria	2916	Open in IMG/M
3300001545\|JGI12630J15595_10027706	Not Available	1178	Open in IMG/M
3300001545\|JGI12630J15595_10080785	Not Available	639	Open in IMG/M
3300001661\|JGI12053J15887_10003163	All Organisms → cellular organisms → Bacteria → Proteobacteria	8247	Open in IMG/M
3300001661\|JGI12053J15887_10022379	All Organisms → cellular organisms → Bacteria	3541	Open in IMG/M
3300002245\|JGIcombinedJ26739_100010643	All Organisms → cellular organisms → Bacteria	7474	Open in IMG/M
3300002245\|JGIcombinedJ26739_100110914	Not Available	2576	Open in IMG/M
3300002245\|JGIcombinedJ26739_100139802	Not Available	2287	Open in IMG/M
3300002245\|JGIcombinedJ26739_100308269	Not Available	1467	Open in IMG/M
3300002906\|JGI25614J43888_10000674	All Organisms → cellular organisms → Bacteria	9582	Open in IMG/M
3300002906\|JGI25614J43888_10009320	All Organisms → cellular organisms → Bacteria	3179	Open in IMG/M
3300002906\|JGI25614J43888_10061302	Not Available	1096	Open in IMG/M
3300002917\|JGI25616J43925_10056019	Not Available	1694	Open in IMG/M
3300002917\|JGI25616J43925_10199702	Not Available	773	Open in IMG/M
3300002917\|JGI25616J43925_10251091	Not Available	664	Open in IMG/M
3300002917\|JGI25616J43925_10365757	Not Available	533	Open in IMG/M
3300005174\|Ga0066680_10385661	Not Available	891	Open in IMG/M
3300005181\|Ga0066678_10545046	Not Available	770	Open in IMG/M
3300005434\|Ga0070709_11787741	Not Available	503	Open in IMG/M
3300005435\|Ga0070714_100192899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1860	Open in IMG/M
3300005445\|Ga0070708_100747112	Not Available	920	Open in IMG/M
3300005467\|Ga0070706_100063536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3412	Open in IMG/M
3300005467\|Ga0070706_100724567	Not Available	922	Open in IMG/M
3300005467\|Ga0070706_100884199	Not Available	825	Open in IMG/M
3300005468\|Ga0070707_100117154	Not Available	2585	Open in IMG/M
3300005471\|Ga0070698_100972849	Not Available	795	Open in IMG/M
3300005536\|Ga0070697_100656916	Not Available	924	Open in IMG/M
3300005536\|Ga0070697_101382498	Not Available	628	Open in IMG/M
3300005536\|Ga0070697_101654133	Not Available	572	Open in IMG/M
3300005568\|Ga0066703_10789487	Not Available	543	Open in IMG/M
3300006163\|Ga0070715_10432557	Not Available	739	Open in IMG/M
3300006173\|Ga0070716_100045937	Not Available	2455	Open in IMG/M
3300006173\|Ga0070716_101003096	Not Available	660	Open in IMG/M
3300006173\|Ga0070716_101040572	Not Available	649	Open in IMG/M
3300007258\|Ga0099793_10060347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1694	Open in IMG/M
3300011120\|Ga0150983_12447186	Not Available	519	Open in IMG/M
3300012199\|Ga0137383_10580416	Not Available	820	Open in IMG/M
3300012199\|Ga0137383_10836625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300012202\|Ga0137363_10646951	Not Available	894	Open in IMG/M
3300012202\|Ga0137363_10666727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300012203\|Ga0137399_10217349	Not Available	1557	Open in IMG/M
3300012203\|Ga0137399_10349387	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300012203\|Ga0137399_11714414	Not Available	517	Open in IMG/M
3300012205\|Ga0137362_10331812	Not Available	1317	Open in IMG/M
3300012205\|Ga0137362_10841563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	785	Open in IMG/M
3300012205\|Ga0137362_11154505	Not Available	658	Open in IMG/M
3300012210\|Ga0137378_10933145	Not Available	781	Open in IMG/M
3300012211\|Ga0137377_10117750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2530	Open in IMG/M
3300012349\|Ga0137387_11330061	Not Available	501	Open in IMG/M
3300012351\|Ga0137386_11105115	Not Available	559	Open in IMG/M
3300012357\|Ga0137384_10447516	Not Available	1063	Open in IMG/M
3300012361\|Ga0137360_11003208	Not Available	720	Open in IMG/M
3300012362\|Ga0137361_10126503	Not Available	2258	Open in IMG/M
3300012362\|Ga0137361_10239210	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300012362\|Ga0137361_10249265	Not Available	1618	Open in IMG/M
3300012362\|Ga0137361_10410435	Not Available	1244	Open in IMG/M
3300012362\|Ga0137361_11184667	Not Available	686	Open in IMG/M
3300012582\|Ga0137358_10077959	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300012582\|Ga0137358_10284959	Not Available	1122	Open in IMG/M
3300012582\|Ga0137358_10428189	Not Available	894	Open in IMG/M
3300012582\|Ga0137358_10911583	Not Available	575	Open in IMG/M
3300012685\|Ga0137397_10251629	Not Available	1316	Open in IMG/M
3300012922\|Ga0137394_10755992	Not Available	816	Open in IMG/M
3300012923\|Ga0137359_10010447	All Organisms → cellular organisms → Bacteria	7722	Open in IMG/M
3300012923\|Ga0137359_10055829	All Organisms → cellular organisms → Bacteria	3437	Open in IMG/M
3300012923\|Ga0137359_10077711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2910	Open in IMG/M
3300012923\|Ga0137359_10187575	Not Available	1847	Open in IMG/M
3300012923\|Ga0137359_10739124	Not Available	855	Open in IMG/M
3300012923\|Ga0137359_11706331	Not Available	517	Open in IMG/M
3300012925\|Ga0137419_10916688	Not Available	722	Open in IMG/M
3300012929\|Ga0137404_10696529	Not Available	919	Open in IMG/M
3300012929\|Ga0137404_10896569	Not Available	808	Open in IMG/M
3300012930\|Ga0137407_10391587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1285	Open in IMG/M
3300012930\|Ga0137407_10793891	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300015242\|Ga0137412_10163001	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300020199\|Ga0179592_10288671	Not Available	730	Open in IMG/M
3300021046\|Ga0215015_10573246	All Organisms → cellular organisms → Bacteria	5334	Open in IMG/M
3300021088\|Ga0210404_10731991	Not Available	564	Open in IMG/M
3300021171\|Ga0210405_11297117	Not Available	535	Open in IMG/M
3300021432\|Ga0210384_10272508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1524	Open in IMG/M
3300023046\|Ga0233356_1000221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	4182	Open in IMG/M
3300025910\|Ga0207684_11229724	Not Available	619	Open in IMG/M
3300025922\|Ga0207646_10122941	Not Available	2333	Open in IMG/M
3300025939\|Ga0207665_10065975	Not Available	2462	Open in IMG/M
3300026304\|Ga0209240_1002593	Not Available	6861	Open in IMG/M
3300026304\|Ga0209240_1022845	Not Available	2395	Open in IMG/M
3300026304\|Ga0209240_1078578	Not Available	1219	Open in IMG/M
3300026319\|Ga0209647_1001283	All Organisms → cellular organisms → Bacteria	21709	Open in IMG/M
3300026319\|Ga0209647_1004301	All Organisms → cellular organisms → Bacteria	10759	Open in IMG/M
3300026319\|Ga0209647_1007676	All Organisms → cellular organisms → Bacteria	7548	Open in IMG/M
3300026319\|Ga0209647_1058534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2020	Open in IMG/M
3300026356\|Ga0257150_1004983	Not Available	1766	Open in IMG/M
3300026514\|Ga0257168_1157152	Not Available	507	Open in IMG/M
3300026555\|Ga0179593_1002168	Not Available	1986	Open in IMG/M
3300026557\|Ga0179587_10206993	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1245	Open in IMG/M
3300026557\|Ga0179587_10265628	Not Available	1100	Open in IMG/M
3300027521\|Ga0209524_1010885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1818	Open in IMG/M
3300027537\|Ga0209419_1129644	Not Available	503	Open in IMG/M
3300027583\|Ga0209527_1006904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Acaryochloridaceae → Acaryochloris → unclassified Acaryochloris → Acaryochloris sp. CCMEE 5410	2357	Open in IMG/M
3300027643\|Ga0209076_1066144	Not Available	1027	Open in IMG/M
3300027727\|Ga0209328_10010534	All Organisms → cellular organisms → Bacteria	2780	Open in IMG/M
3300027727\|Ga0209328_10017926	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2154	Open in IMG/M
3300027738\|Ga0208989_10026791	Not Available	1990	Open in IMG/M
3300027738\|Ga0208989_10052729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1405	Open in IMG/M
3300031753\|Ga0307477_10536221	Not Available	793	Open in IMG/M
3300031754\|Ga0307475_11121306	Not Available	615	Open in IMG/M
3300031962\|Ga0307479_10394508	Not Available	1368	Open in IMG/M
3300031962\|Ga0307479_10444355	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1281	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.54%
Loam	Environmental → Terrestrial → Soil → Loam	32.46%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.77%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	12.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1	Environmental	Open in IMG/M
3300001369	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300023046	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-SFM-MS	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01882790	2088090014	Soil	VKNSPSFRRRIDHGHYAIELHGWRTPESCTFATFIYEKNPERLVRHITGTDEAEVIRQALLWCEAN
JGI1027J12803_1008288563	3300000955	Soil	VRNSPSFQKSVDHGHHVIELHAWRGPESASFAAFIYEKAGQRLLRHFTGSDENEVIRQALKWCEKN*
JGI1027J12803_1015202112	3300000955	Soil	MISASFQRSIDQGPFLIELHTWLSAEKATLATFIYEKAGERLFRLNFTGSNQNEVIRQA
JGI1027J12803_1036611532	3300000955	Soil	VKNSPSFKRSIDHGHHLIELHAWQSGETCTFATFVYAKKPERLQRHFTGSDENEVI
JGI11823J13286_10070581	3300001164	Forest Soil	FQLAVEHGRFSIELHAWRNAEICTFTTLIYDKAGEQLLQQFPSQDQNEIIWQALKWCEENSR*
JGI12701J14581_10097341	3300001369	Forest Soil	VPVGEVRNSPSFQRRVDYGHHVIELHAWRRPEGSSFATFIYEKAAERLLRHFTSADENEVIRQSLVWCEQNS*
JGI12630J15595_100048863	3300001545	Forest Soil	VCLSEEKLRSSPFQQSIDHGPYSIESHAWRSAESCTFATFVYQRSSEQLLWLFTGSDGNEVIWQSLKWCEQNS*
JGI12630J15595_100277061	3300001545	Forest Soil	QTSLLVRSKEGLVCLSEEKLRSSPFQQSIDHGPYSIESHAWRSAESCTFATFVYQRSSEQLLWLFTGSDGNEVIWQSLKWCEQNS*
JGI12630J15595_100807851	3300001545	Forest Soil	LRNSSSFQQGIDHGVYSIELHAWRSAERTTFATFVYERSSERLRRYFTGSDENEVIWQALKWC
JGI12053J15887_100031638	3300001661	Forest Soil	LKNSQSFQQSIDHGSYSIELHAWRSAERTTFATFVYQRSGERLLRYFTGLDENEVIWQALKWCEEN*
JGI12053J15887_100223794	3300001661	Forest Soil	VYLSEQNLRNSPSFQRSIDHGHHVIELHAWRSADVCTFATFVYAKSPERLLRHFTGSDENEVIRQALVWCEKNS*
JGIcombinedJ26739_1000106433	3300002245	Forest Soil	VRNWPSFQRSIDHGHYLIELHAWGSPETISFATFVYEKAAGRLLRHFTGSDENEVIRQALKWCEQN*
JGIcombinedJ26739_1001109147	3300002245	Forest Soil	MRRLWNLPSFQRSIDRGQYLIQLHAWRSPEGASFVTFIFEKAGERILRHFTGSDENKVIRQALAWCDENS*
JGIcombinedJ26739_1001398026	3300002245	Forest Soil	VRNSLSFQCSVDHGHFSVELHTWWGAESCTFATFIYDKGGERLLQRFTGSDENEVICQALKWCEQN*
JGIcombinedJ26739_1003082693	3300002245	Forest Soil	MIRYIGKSEELAIFQGSLDHGHYVIELHAWRHAEDCTFATFIYERVPERLLRHITGSDEDEVIRRALVCCEKELAS*
JGI25614J43888_100006749	3300002906	Grasslands Soil	VRNSPSFEGSLDHGHYVIELHAWRHAEDCTFATFIYEKVPERLVRHITGTDENEVIRRALVCCEKELAP*
JGI25614J43888_100093202	3300002906	Grasslands Soil	MRNSPSFQRSIDYGHFSIELHACRRVESSTFAMFIYEKIGERLLRHFTGSDENEVIRQALKWCEEN*
JGI25614J43888_100613022	3300002906	Grasslands Soil	VRNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDENEVIRQALIWCEENS*
JGI25616J43925_100560193	3300002917	Grasslands Soil	MKRLRNLPSFQRSIDHGQYVIELHAWWSPESASIATFIYEKAAERLLRHFTGADENKVIRPALVWCNENS*
JGI25616J43925_101997021	3300002917	Grasslands Soil	VCLLKENLRNLPSFQQSIDHGSYSIEWHAWRSAVMPTFTTFVYERSSEPLLRHFAGSDENEVIWQALTWCERNS*
JGI25616J43925_102510911	3300002917	Grasslands Soil	MRNSPSFQRSIDYGHFSIELHACRRVESGTFAMFIYEKIGERLLRHFTGSDENEVIRQALKW
JGI25616J43925_103657571	3300002917	Grasslands Soil	VRNSPSFQRRVDHGHHVIELHAWRKPEGSSFATFIYEKAAERLLRHFTGADENEVISQSLVWCERNS*
Ga0066680_103856611	3300005174	Soil	MKRLRNLPSFKRSTDHGQYVIELHAWVSPEAASFTTFIFEKATERVLRHFTGSDEYTVIRQALAWCDENS*
Ga0066678_105450461	3300005181	Soil	MNRLRNLPSFKRSTDHGQYVIELHAWVSPEAASFTTFIFEKATERVLRHFTGSDEYTVIRQALAWCDENS*
Ga0070709_117877411	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VKNSPSFRRRIDHGHYAIELHGWRIPESCTFATFIYEKNPERLVRHITGTDEAEVIRQALLWCEAN*
Ga0070714_1001928992	3300005435	Agricultural Soil	VKNSPSFKRSIDHGHHLIELHAWQSGETCTFATFVYAKKPERLLRHFTGSDENEVIRQALVWCEENSGV*
Ga0070708_1007471123	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VRNSPSFQRNIDHGHFSIELHAWRSAEGCTFATFIYDQVSERLLRHFTGPDENEVIRQALVWCEQNS*
Ga0070706_1000635363	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIRYIGKSEELAIFQGSLDHGNYVIELHAWRHADGCTFATFIYERVPERLLRHITGTDENEVIRRALVCCEKELAP*
Ga0070706_1007245671	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	SMLCSIKILRNSPSFQRSVDHGQYVIELHAWRSPESASFATFIYEKTGERLLRHFTGSDENEVIRQARVWCDENS*
Ga0070706_1008841992	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAKVAISWVESLNCTSFQRIVDHGHFSIELHTRRSAESYTFATFIYEKAGKRLLRHFTGSDENEVIRQALVWCEKNS*
Ga0070707_1001171543	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VSVREAVRNSASFQQSIDHGPYSIDLHAWRSAERPTFAAFVYQRSSERLLRHFTGSDENEVIWQALKWCEENS*
Ga0070698_1009728491	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MFAAKVATSWVESLNCTSFQRIVDHGHFSIELHTWRSAESYTFATFIYEKVGKRLLRHFTGSDENEVICQALVWCEKNS*
Ga0070697_1006569161	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VRNSPSFQCCVDHGHFSIELHTWWSAESCTFATFIYEKGGERLLQQFTGSDENEVIWQAL
Ga0070697_1013824983	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	FQCSVDHGHFSIELHPWWSAESCTFATFIYDKGGERLLQQFTGSDENEVICQALKWCEQN
Ga0070697_1016541332	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VRNSPSFEGSLDHGHYVIELHAWRHAQDCTFATFIYEKVPERLLRHITGTDENEVIRRALVCCEKELA
Ga0066703_107894871	3300005568	Soil	VRNSPSFQKSVDHGHHVFELHVWRTPEGTSFATFIYEKVAERLLRHFTGSHENEVIRQALKWCEENL*
Ga0070715_104325571	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	CQRKVRNSPSFQRSIDHGQYAIELHAWRSPESASFATFIYEKAGERLLRHFTGSDENEVIRQALKWCEEN*
Ga0070716_1000459377	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDENEVIRQALIWCEENS*
Ga0070716_1010030961	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VRNSPSFKRSIDHGHYVIELHAWRTADRCTFATFIYEKAAWRLLRHFTGSDENEVIQQALKWCEEH*
Ga0070716_1010405721	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VSLLSSIIFPEVRNSPSFQRSIDQGHFSIELHAWRRAENGTFAMFVYEKVGERLLRHFTGSDENEVIRQAVMWCEKNS*
Ga0099793_100603471	3300007258	Vadose Zone Soil	VRNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDENEVIRQALKWCEEN*
Ga0150983_124471862	3300011120	Forest Soil	MRNSPSFQRSINYGHFSIELHACRRVESSTFAMFIYEKIDERLLRHFTGSDENEVIRQALIWCDENS*
Ga0137383_105804161	3300012199	Vadose Zone Soil	LALFILPAFEVDHGPLSIELHAWRRAESGTFAMFIYEKIGERLLRHFTGSDENEVIRQALVWCEKNS*
Ga0137383_108366252	3300012199	Vadose Zone Soil	NSPSFQRSIDHGQYVIESHAWLSPESASFATFIYEKAGERLLRHFTGSDENEVIRQALKWCEEN*
Ga0137363_106469513	3300012202	Vadose Zone Soil	VRNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDKNEVIRQALIWCEENS*
Ga0137363_106667272	3300012202	Vadose Zone Soil	VRNSPSFQKSIDHGHHVIELHAWRRPEGTSFATFIYEKAAERLLRHFTGSDENEVIRQALMWCEEN*
Ga0137399_102173493	3300012203	Vadose Zone Soil	VKNSPSFQRSLDHGHNVIELHAWRKPESCTFATFIYEKVPERLLRHITGTDENEVIRQALIWCEKE*
Ga0137399_103493872	3300012203	Vadose Zone Soil	VKNSPSFKRSIDHGHHLIELHAWQSGETCTFATFVDAKSPKRLLRHFTGSDENEVIRQALVWCEENS*
Ga0137399_117144141	3300012203	Vadose Zone Soil	MISASFQRSIDQGPFLIELHTWLSAEKATFATFIYEKAGERLLRRHFTGSHQNEVIRQALIWCDENS*
Ga0137362_103318121	3300012205	Vadose Zone Soil	YLFSIDHGQYVIELHAWPSPEIASFATFIYEEAAERLLRHFTASDENKVIRQALVWCSENSLSLTNGF*
Ga0137362_108415632	3300012205	Vadose Zone Soil	MKRLRNLPSFQRSIDHGQYVIQLHAWRSPESDSFATFIYEKAAERVMRHFTGADENEVIRQAQVWCDENS*
Ga0137362_111545051	3300012205	Vadose Zone Soil	VKNSPSFRRSIDHGHHLIELHALQSAETCMFATFVYAKSPERLMRHFTGSDENEVIRQALVWCEENSGEL*
Ga0137378_109331451	3300012210	Vadose Zone Soil	EVRNSPSFQKSVDHGHHVFELHVWRTPEGTSFATFIYEKVAERLLRHFTGSHENEVIRQALKWCEENL*
Ga0137377_101177506	3300012211	Vadose Zone Soil	MKRLRNLPSFQRSIDHGQYVIQLHVWRSQEGASVVTFIFEKAGERLLRHFTGSDEYEVIRQALAWCDENS*
Ga0137387_113300612	3300012349	Vadose Zone Soil	VCVCQRKVRNSLSFQRSIGHEQYVIELHAWRSPERTSFATFIYEKAAERLLRHFTGSDENQVIRQALVWCEENS*
Ga0137386_111051152	3300012351	Vadose Zone Soil	RKVRNSLSFQRSIGHEQYVIELHAWRSPERTSFATFIYEKAAERLLRHFTGSDENQVIRQALVWCEENS*
Ga0137384_104475161	3300012357	Vadose Zone Soil	RAPSFGRAGISSWPEGVVCVCQRKVRNSLSFQRSIGHEQYVIELHAWRSPERTSFATFIYEKAAERLLRHFTGSDENQVIRQALVWCEENS*
Ga0137360_110032082	3300012361	Vadose Zone Soil	RSIDQGPFSIELHTWRTAEKAMFATFIYEKAGERLFRRNFTGSNQNEVIRQALVWCDENS
Ga0137361_101265033	3300012362	Vadose Zone Soil	VKNSPSFRRSIDHGHHLIELHAWRNETCTFATFVYAKSPERLLRHFTGSDENEVIRQALVWCEENSGEL*
Ga0137361_102392102	3300012362	Vadose Zone Soil	VRNSPSFQKSVDHGHHVIELHAWRRPEGTSFAAFIYEKAAERLLRHFTGSDENEVIRQALMWCEEN*
Ga0137361_102492651	3300012362	Vadose Zone Soil	LPSFQCSVDHGHFSIELHTWSSAESCTFATFIYEKGGERLLQQFTGSDENEVIWQALKWSEKL
Ga0137361_104104351	3300012362	Vadose Zone Soil	LRNLPSFKRSTDHGQYVIELHAWVSPEAASFTTFIFEKATERVLRHFTGSDEYTVIRQALAWCDENS*
Ga0137361_111846671	3300012362	Vadose Zone Soil	LRNLPSFQRSIDHGQYVIQLHVWRSQEGASFAAFVYAKGPERLLRHFTGWNENKVIRQALVWCDENS*
Ga0137358_100779591	3300012582	Vadose Zone Soil	DQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDENEVIRQALKWCEEN*
Ga0137358_102849591	3300012582	Vadose Zone Soil	MRNSASFQQSVDHGPFSIELHAWKSAERPTFATFVYQRSSERLLRYFTGSDENEVICQALKWCEEN*
Ga0137358_104281892	3300012582	Vadose Zone Soil	VCVCQRKVRNSLSFQRSIDHEQYVIELHAWRSPESASFATFIYEKAAERLLRHFTGSDENQVIRQALVWCEENS*
Ga0137358_109115831	3300012582	Vadose Zone Soil	VKNSPSFRRSIDHGHHLIELHAWRSETCTFATFVYAKSPERLLRHFTGSDENEVIRQALVWCEENSGEL*
Ga0137397_102516291	3300012685	Vadose Zone Soil	VPVGEVRNSPSFQRRVDYGHHVIELHAWRRPEGSSFATFIYEKTAERLLRHFTSADENEVIRQSLVWCEQNS*
Ga0137394_107559921	3300012922	Vadose Zone Soil	KKEELFRQSSPPAGLLKVSLLSSIIFPEVRNSPSFQRSIDQGHFSIELHAWRRAENGTFAMFVYEKVGERLLRHFTGSDENEVIRQALKWCEENL*
Ga0137359_100104474	3300012923	Vadose Zone Soil	VRNSPSFQGSFDHGHYVIELHAWRHTEDCTFATFIYEKIQQRLLQHITGTDENEVIRQALVWCEKE*
Ga0137359_100558291	3300012923	Vadose Zone Soil	MLCSIKILRNSPSFQRSIDHGQYVIQLHVWRSQEGASVVTFIFEKAGERLLRHFTGSDEYEVIRQAL
Ga0137359_100777112	3300012923	Vadose Zone Soil	MFAAKVAISWVESLNCTSFQRIVDHGHFSIELHTWRSAESYTFATFIYEKAGKRLLRHFTGSDETEVIRQALAWCERN*
Ga0137359_101875752	3300012923	Vadose Zone Soil	MLCSISILRNSPSFQRSIDHGQYVIELHGWRSPEIASFATFIYEKAAERLLRRFTGADENEVLRKARVWCDENS*
Ga0137359_107391242	3300012923	Vadose Zone Soil	VRNSPSFQKSVDHDHHVIELHAWRRPEGTSFAAFIYEKAAERLLRHFTGSDENEVIRHALMWCEEN*
Ga0137359_117063311	3300012923	Vadose Zone Soil	SMLCSIKILTNSPSFQRRIDHGHYVIELHAWRSPESATFATFIYEKAGERLVRHFTGSDENEVIRQALMWCEKD*
Ga0137419_109166881	3300012925	Vadose Zone Soil	VRNSPSFQGSFDHGHYVIELHAWRHTETCTFATFIYEKARERLLQHITGTDENEVIRQALVWCEKE*
Ga0137404_106965292	3300012929	Vadose Zone Soil	MKRLRNLPSFQRSIDHGQYVIQLHVWRSQEGASVVTFIFEKAGERLLRHFTGSDEYEVIRQALAWSDENS*
Ga0137404_108965692	3300012929	Vadose Zone Soil	MKRLRNLPSFKRSTDHGQYVIELHAWVSPEAASFTTFIFEKATERVLRHFTGSDEYTVIRQALAWCDE
Ga0137407_103915873	3300012930	Vadose Zone Soil	FCSMKRLRNLPSFKRSTDHGQYVIELHAWVSPEAASFTTFIFEKATERVLRHFTGSDEYTVIRQALAWCDENS*
Ga0137407_107938912	3300012930	Vadose Zone Soil	VRNSPSFQKSVDHGHHVFELHVWRTPEGTSFATFIYEKVAERLLRHFTGSHENEVIRQALKWC
Ga0137412_101630013	3300015242	Vadose Zone Soil	MRNLPSLQRTVDHGQYVIELHAWMSPESASFATFIYEKTGERLLRHFTGSDENEVIRQARMWCEKNN*
Ga0179592_102886711	3300020199	Vadose Zone Soil	VRNSPSFQKSVDHGHHVIELHAWRSPESASFAAFIYEKAGRRLLRHFTGSDENEVIRQAVKWCEEN
Ga0215015_105732461	3300021046	Soil	VRNSPSFQRSIDQGHFSIELHAWRRAESGTFAMFVYEKVGERLLRHFTGSDENEVIRQALKWCDENL
Ga0210404_107319911	3300021088	Soil	VRNSPSFQGSLDHGHYVIELHAWRHAEDCTFATFIYETVPERLLRHITGTDENEVIRRALVYCEKEL
Ga0210405_112971171	3300021171	Soil	VGNSLSFQRSIDHGHHLIELDAWRSAEGCTFATFIYEKNSERLLRHITGTDENEVIRQALVWCEREPIC
Ga0210384_102725081	3300021432	Soil	VRNSPSFQQSIDHGAFSVELHAWRRAETSTFAMFIYEKIGERLLQHFTGSDENEVIRQALKWCEEN
Ga0233356_10002211	3300023046	Soil	VRNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDENEVIRQALKWCEEN
Ga0207684_112297242	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MCIRWSKNLKNSPSFQRSIDQGPFSIELHTWLSAEKATFATFIYEKAGERLFRQHFTDSDQNEVIRQALKWCE
Ga0207646_101229412	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSVREAVRNSASFQQSIDHGPYSIDLHAWRSAERPTFAAFVYQRSSERLLRHFTGSDENEVIWQALKWCEENS
Ga0207665_100659752	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VRNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTGSDENEVIRQALIWCEENS
Ga0209240_10025938	3300026304	Grasslands Soil	MQRLRNLPSFQRSIDHGQYVIELHAWPSPEIASFATFIYEKAAERLLRHFTGSDENEVLRKARVWCEKIS
Ga0209240_10228452	3300026304	Grasslands Soil	LRNSPSFELIVDRGHFSIELHAWRSAESCTFATFIYEKAGERLLQHFTGSDENKVTRQAQVWCDENS
Ga0209240_10785782	3300026304	Grasslands Soil	VCLLKENLRNLPSFQQSIDHGSYSIEWHAWRSAVMPTFTTFVYERSSEPLLRHFAGSDENEVIWQALTWCERNS
Ga0209647_100128323	3300026319	Grasslands Soil	MRNSPSFQRSIDYGHFSIELHACRRVESSTFAMFIYEKIGERLLRHFTGSDENEVIRQALKWCEEN
Ga0209647_100430114	3300026319	Grasslands Soil	MRTSPSFQRSINYGHFSIELHACRRVESSTFAMFIYEKIDERLLRHFTGSDENEVIRQALIWCDENS
Ga0209647_10076763	3300026319	Grasslands Soil	MKRLRNLPSFQRSIDHGQYVIELHAWWSPESASIATFIYEKAAERLLRHFTGADENKVIRQALVWCNENS
Ga0209647_10585344	3300026319	Grasslands Soil	MRSIDHGHYVIELHAWRSAESCTFATFIYEKAGERLLRHFTGSDENEVIRQALVWCEKN
Ga0257150_10049833	3300026356	Soil	FSSALFCFDSQRYELSEQDLRNSPSFELIVDRGHFSIELHAWRSAESCTFATFIYEKAGERLLQHFTGSDENKVTRQAQVWCDENS
Ga0257168_11571522	3300026514	Soil	MLCSIKILRNSPSFQRSVDHGQYVIELHAWRSPESASFATFIYEKIGERLLRHFTGSDENEVIRQARAWCDENS
Ga0179593_10021681	3300026555	Vadose Zone Soil	RHYQRKVRNSPSFQRTIDRGQYVIELYAWLSPESASFATFIYEKAGERLLRHFTGSDENEVIRQARMWCEKNN
Ga0179587_102069933	3300026557	Vadose Zone Soil	VKNSPSFQRSLDHGHNVIELHAWRKPERGKFATFIYEKVPERLLRHITGTDENEVIRQALIWCEKE
Ga0179587_102656281	3300026557	Vadose Zone Soil	VKGKLEDLPSFQQSIDHGSYSIEWHAWRSAVMPTFTTFVYERSSEPLLRHFAGSDENEVIWQALTWCERNS
Ga0209524_10108851	3300027521	Forest Soil	IDHGPFSIELHAWRSAERPTFATFVYQRSSERLRRYFTGSDENEVIWQALKWCEQNS
Ga0209419_11296441	3300027537	Forest Soil	MRRLWNLPSFQRSIDRGQYLIQLHAWRSPEGASFVTFIFEKAGERILRHFTGSDENKVIRQALAWCDENS
Ga0209527_10069043	3300027583	Forest Soil	YGLPGNFNASFQLAVDHGHFSIELHTWRNAESSTFATFIYDKAGQRLLQQFTGPDQNEVIWQALKWCEENSR
Ga0209076_10661442	3300027643	Vadose Zone Soil	VCLLKENLRNLPSFQQSIDHGSYSIEWHAWRSAVMPTFTTFVYERSSEPLLRHFAGSDENEVIWQALTWCERN
Ga0209328_100105341	3300027727	Forest Soil	VPVGEVRNSPSFQRRVDYGHHVIELHAWRRPEGSSFATFIYEKAAERLLRHFTSADENEVIRQSLVWCEQNS
Ga0209328_100179263	3300027727	Forest Soil	VRNWPSFQRSIDHGHYLIELHAWGSPETISFATFVYEKAAGRLLRHFTGSDENEVIRQALKWCEQN
Ga0208989_100267912	3300027738	Forest Soil	MQRLRNLPSFRRSIDHDQYVIELHARRSPESASFATFIYEKADERLLRHFTGADENKVIRQALR
Ga0208989_100527292	3300027738	Forest Soil	VKNSPSFQRSLDHGHNVIELHAWRKPERCTFATFIYEKVPERLLRHITGTDENEVIRQALIWCEKE
Ga0307477_105362212	3300031753	Hardwood Forest Soil	MKRLRNLPSFQRSIDHGEYVIELHAWPSPESDSFATFIHEKAAERLLRHFTGANENEVIRQARFWCDENS
Ga0307475_111213062	3300031754	Hardwood Forest Soil	VRNSPSFQRSIDHGHHVIELHAWRSPEGTTFATSIYEKAAERLLRHFIGADENEVTRQSLVWCEEN
Ga0307479_103945082	3300031962	Hardwood Forest Soil	VRNSPSFQRSIDHGNYVVELHAWRKTDGRMFATFIYEKAAGRLLRHFIGTDENEVIRQALKWCEENS
Ga0307479_104443551	3300031962	Hardwood Forest Soil	VRNSPSFQGSIDQGHFSIELHAWRHAESGTFAMFVYEKIGERLLRHFTASDENEVIRQALKWCEEN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081815

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences