Metagenome / Metatranscriptome Family F081816

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081816
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	87 residues
Representative Sequence	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRAGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR
Number of Associated Samples	83
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.21 %
% of genes near scaffold ends (potentially truncated)	30.70 %
% of genes from short scaffolds (< 2000 bps)	89.47 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.018 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.807 % of family members)
Environment Ontology (ENVO)	Unclassified (31.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.123 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.97% β-sheet: 23.73% Coil/Unstructured: 48.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
d.153.1.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases)	d1ofda3	1ofd	0.73
d.58.6.1: Nucleoside diphosphate kinase, NDK	d3gp9a1	3gp9	0.72
d.58.19.1: Bacterial exopeptidase dimerisation domain	d1r3na2	1r3n	0.71
d.58.6.0: Nucleoside diphosphate kinase, NDK	d4dz6a1	4dz6	0.71
d.58.30.1: 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK	d1f9ya_	1f9y	0.7

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00487	FA_desaturase	10.53
PF04679	DNA_ligase_A_C	2.63
PF00756	Esterase	0.88
PF00196	GerE	0.88
PF04299	FMN_bind_2	0.88
PF13792	Obsolete Pfam Family	0.88
PF13602	ADH_zinc_N_2	0.88
PF13549	ATP-grasp_5	0.88
PF03670	UPF0184	0.88
PF00128	Alpha-amylase	0.88
PF14106	DUF4279	0.88
PF04279	IspA	0.88
PF13769	Virulence_fact	0.88
PF00916	Sulfate_transp	0.88
PF01872	RibD_C	0.88
PF02687	FtsX	0.88
PF09851	SHOCT	0.88
PF04545	Sigma70_r4	0.88
PF10604	Polyketide_cyc2	0.88
PF13185	GAF_2	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	10.53
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	10.53
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.63
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.88
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.88
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.88
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.88
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.88
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.88
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.88
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.88
COG2917	Intracellular septation protein A	Cell cycle control, cell division, chromosome partitioning [D]	0.88
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
All Organisms	root	All Organisms	42.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
cellular organisms	root	All Organisms → cellular organisms	42.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	17.54 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	14.91 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.75 %
unclassified Propionibacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales	0.88 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	11.40 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.88 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	0.88 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Nocardioides euryhalodurans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans	1.75 %
Nocardioides nitrophenolicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides nitrophenolicus	1.75 %
Nocardioides panacis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	0.88 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	0.88 %
Nocardioides seonyuensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides seonyuensis	0.88 %
Nocardioides immobilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides immobilis	0.88 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	0.88 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.88 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.02 %
Nocardioides euryhalodurans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans	1.75 %
Nocardioides nitrophenolicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides nitrophenolicus	1.75 %
Nocardioides sp. B-3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. B-3	0.88 %
Nocardioides panacis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	0.88 %
Nocardioides seonyuensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides seonyuensis	0.88 %
Nocardioides immobilis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides immobilis	0.88 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	0.88 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	0.88 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0493608	Not Available	512	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0726621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides nitrophenolicus	1567	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0729587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides nitrophenolicus	1339	Open in IMG/M
3300000956\|JGI10216J12902_104890911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides immobilis	1137	Open in IMG/M
3300000956\|JGI10216J12902_112587794	Not Available	601	Open in IMG/M
3300000956\|JGI10216J12902_116679268	Not Available	702	Open in IMG/M
3300001213\|JGIcombinedJ13530_102497564	Not Available	646	Open in IMG/M
3300002184\|JGI24770J26754_10019295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	3652	Open in IMG/M
3300002184\|JGI24770J26754_10057249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1660	Open in IMG/M
3300002568\|C688J35102_120361705	Not Available	1014	Open in IMG/M
3300002568\|C688J35102_120765832	Not Available	1520	Open in IMG/M
3300002568\|C688J35102_120857027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1848	Open in IMG/M
3300004114\|Ga0062593_100389271	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1240	Open in IMG/M
3300004114\|Ga0062593_102012953	Not Available	642	Open in IMG/M
3300004114\|Ga0062593_103501460	Not Available	504	Open in IMG/M
3300004156\|Ga0062589_101366443	Not Available	689	Open in IMG/M
3300004156\|Ga0062589_101899950	Not Available	600	Open in IMG/M
3300004480\|Ga0062592_101608134	Not Available	628	Open in IMG/M
3300004643\|Ga0062591_101683969	Not Available	642	Open in IMG/M
3300005093\|Ga0062594_100424606	Not Available	1087	Open in IMG/M
3300005093\|Ga0062594_102055384	Not Available	612	Open in IMG/M
3300005093\|Ga0062594_102396956	Not Available	576	Open in IMG/M
3300005093\|Ga0062594_102837549	Not Available	539	Open in IMG/M
3300005344\|Ga0070661_101774718	Not Available	523	Open in IMG/M
3300005367\|Ga0070667_100090652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2628	Open in IMG/M
3300005441\|Ga0070700_100783393	Not Available	766	Open in IMG/M
3300005441\|Ga0070700_101342250	Not Available	602	Open in IMG/M
3300005444\|Ga0070694_100795503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300005468\|Ga0070707_100158468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2205	Open in IMG/M
3300005530\|Ga0070679_100403325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1313	Open in IMG/M
3300005563\|Ga0068855_102091203	Not Available	570	Open in IMG/M
3300005578\|Ga0068854_101800295	Not Available	561	Open in IMG/M
3300005614\|Ga0068856_100551552	Not Available	1174	Open in IMG/M
3300005615\|Ga0070702_100599611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	825	Open in IMG/M
3300005615\|Ga0070702_101760104	Not Available	517	Open in IMG/M
3300005616\|Ga0068852_101522114	Not Available	691	Open in IMG/M
3300005618\|Ga0068864_102349630	Not Available	539	Open in IMG/M
3300006163\|Ga0070715_10406730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	758	Open in IMG/M
3300006237\|Ga0097621_100609188	Not Available	999	Open in IMG/M
3300006237\|Ga0097621_101207530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300006792\|Ga0075530_1095599	Not Available	977	Open in IMG/M
3300006904\|Ga0075424_100822835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	991	Open in IMG/M
3300009011\|Ga0105251_10139591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1097	Open in IMG/M
3300009098\|Ga0105245_12308760	Not Available	592	Open in IMG/M
3300009176\|Ga0105242_10446892	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1218	Open in IMG/M
3300010349\|Ga0116240_10176537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1564	Open in IMG/M
3300012212\|Ga0150985_117637849	Not Available	616	Open in IMG/M
3300012212\|Ga0150985_120969336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides seonyuensis	590	Open in IMG/M
3300012908\|Ga0157286_10314010	Not Available	578	Open in IMG/M
3300012909\|Ga0157290_10368463	Not Available	551	Open in IMG/M
3300012943\|Ga0164241_11262834	Not Available	546	Open in IMG/M
3300012985\|Ga0164308_10195882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1535	Open in IMG/M
3300013296\|Ga0157374_10700622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1026	Open in IMG/M
3300013308\|Ga0157375_11571263	Not Available	777	Open in IMG/M
3300014295\|Ga0075305_1075995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides panacis	650	Open in IMG/M
3300014969\|Ga0157376_11557037	Not Available	695	Open in IMG/M
3300015077\|Ga0173483_10600919	Not Available	605	Open in IMG/M
3300015372\|Ga0132256_101029479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	939	Open in IMG/M
3300015374\|Ga0132255_105318363	Not Available	545	Open in IMG/M
3300017792\|Ga0163161_10628948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	888	Open in IMG/M
3300018422\|Ga0190265_10639426	Not Available	1184	Open in IMG/M
3300018422\|Ga0190265_11389174	Not Available	817	Open in IMG/M
3300018429\|Ga0190272_10499851	Not Available	1032	Open in IMG/M
3300018432\|Ga0190275_10004173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	10399	Open in IMG/M
3300018432\|Ga0190275_12700995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	573	Open in IMG/M
3300018432\|Ga0190275_13385693	Not Available	516	Open in IMG/M
3300018466\|Ga0190268_10593898	Not Available	782	Open in IMG/M
3300018469\|Ga0190270_10129175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2006	Open in IMG/M
3300018469\|Ga0190270_11333326	Not Available	761	Open in IMG/M
3300018469\|Ga0190270_11800392	Not Available	668	Open in IMG/M
3300018469\|Ga0190270_12717776	Not Available	558	Open in IMG/M
3300018481\|Ga0190271_10651611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1174	Open in IMG/M
3300019356\|Ga0173481_10335791	Not Available	716	Open in IMG/M
3300019377\|Ga0190264_10056421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1615	Open in IMG/M
3300019377\|Ga0190264_10166631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1163	Open in IMG/M
3300019377\|Ga0190264_10937701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	682	Open in IMG/M
3300022756\|Ga0222622_10931371	Not Available	637	Open in IMG/M
3300025721\|Ga0209587_1115470	Not Available	719	Open in IMG/M
3300025901\|Ga0207688_10046701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2418	Open in IMG/M
3300025901\|Ga0207688_10453354	Not Available	800	Open in IMG/M
3300025914\|Ga0207671_10386029	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1113	Open in IMG/M
3300025927\|Ga0207687_11543229	Not Available	570	Open in IMG/M
3300025935\|Ga0207709_10713939	Not Available	803	Open in IMG/M
3300025938\|Ga0207704_10149751	Not Available	1645	Open in IMG/M
3300025940\|Ga0207691_11388843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300025981\|Ga0207640_12000913	Not Available	525	Open in IMG/M
3300025986\|Ga0207658_10645021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	954	Open in IMG/M
3300026075\|Ga0207708_10877195	Not Available	776	Open in IMG/M
3300026078\|Ga0207702_10337427	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1439	Open in IMG/M
3300026095\|Ga0207676_12013296	Not Available	576	Open in IMG/M
3300027870\|Ga0209023_10023833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	5148	Open in IMG/M
3300027870\|Ga0209023_10098217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	2082	Open in IMG/M
3300028597\|Ga0247820_11147051	Not Available	559	Open in IMG/M
3300028707\|Ga0307291_1119145	Not Available	664	Open in IMG/M
3300028782\|Ga0307306_10189482	Not Available	586	Open in IMG/M
3300028802\|Ga0307503_10108935	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300028861\|Ga0302259_1145530	Not Available	587	Open in IMG/M
3300029923\|Ga0311347_10516431	Not Available	726	Open in IMG/M
3300031091\|Ga0308201_10098592	Not Available	839	Open in IMG/M
3300031229\|Ga0299913_10011003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	8059	Open in IMG/M
3300031229\|Ga0299913_10016127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6802	Open in IMG/M
3300031229\|Ga0299913_11244224	Not Available	703	Open in IMG/M
3300031824\|Ga0307413_11249925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
(restricted) 3300031825\|Ga0255338_1019121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3630	Open in IMG/M
3300031858\|Ga0310892_10685618	Not Available	702	Open in IMG/M
3300031908\|Ga0310900_10253394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. B-3	1269	Open in IMG/M
3300031938\|Ga0308175_100256388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1759	Open in IMG/M
3300031938\|Ga0308175_101570241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans	736	Open in IMG/M
3300031938\|Ga0308175_103259055	Not Available	503	Open in IMG/M
3300031939\|Ga0308174_10105465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides euryhalodurans	2029	Open in IMG/M
3300031939\|Ga0308174_11579720	Not Available	563	Open in IMG/M
3300032074\|Ga0308173_10461525	Not Available	1130	Open in IMG/M
3300032080\|Ga0326721_10134924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	1232	Open in IMG/M
3300034268\|Ga0372943_0149948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1416	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.18%
Host-Associated	Host-Associated	28.95%
Engineered	Engineered	0.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.91%
Plants	Host-Associated → Plants	28.95%
Aquatic	Environmental → Aquatic	5.26%
Wastewater	Engineered → Wastewater	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.16%
Freshwater	Environmental → Aquatic → Freshwater	3.51%
Peat	Environmental → Terrestrial → Peat	1.75%
Roots	Host-Associated → Plants → Roots	1.75%
Marine	Environmental → Aquatic → Marine	0.88%
Sediment	Environmental → Aquatic → Sediment	0.88%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.88%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.39%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.75%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Sand	Environmental → Terrestrial → Soil → Sand	0.88%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.39%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.51%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.63%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.75%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.88%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.26%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	3.51%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.63%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.75%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.75%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.88%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002184	Freshwater and sediment microbial communities from Lake Erie, Canada	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006792	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010349	AD_HKTAca	Engineered	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014295	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025721	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027870	Freshwater and sediment microbial communities from Lake Erie, Canada (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031825 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - MeOH1_35cm_T4_195	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_04936081	2228664021	Soil	MPQTIIYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRTGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR
ICChiseqgaiiDRAFT_07266212	3300000033	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLXVRXGDKXLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR*
ICChiseqgaiiDRAFT_07295872	3300000033	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRTGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR*
JGI10216J12902_1048909112	3300000956	Soil	MPQTITYRGPRVLVGAFAHLLREEGAEFDQPREDRTELAEVAVVAMEVRAGANVNDGTLDAIIGAAVARFKKRFGDDVASIEIAGDQDQRLSWP*
JGI10216J12902_1125877942	3300000956	Soil	MARSTMPQTISYRGPRVLVGALAHLLREEGLTFEQPREDRTEVVAVAVVDLIVSAAEEEPPDRTLDAMIEAAVARFEKRFGDGV
JGI10216J12902_1166792682	3300000956	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVTEVAVVVLAVTAGDKVLDETLDAMIEAAVTRFKKRFGDDVASVEITDDEDLD*
JGIcombinedJ13530_1024975642	3300001213	Wetland	MPQTITYRGPMVLAGAFAHLLREQGVEFARPREDRRGVDETVVVVLAVTAGDNVLDRTLYVMIDAAVAKFKKRFGDDAATIEIAEGEGHR*
JGI24770J26754_100192954	3300002184	Freshwater And Sediment	MPQTITYRGPRVLVGALAHLLRQEGLAFDQPPEDRTELDPVAVVVLEVRAADQAHDLTRATMIDAAVAKFTKRFGDDAALIEITDS*
JGI24770J26754_100572493	3300002184	Freshwater And Sediment	MPQTITYRGPRVLVGALAHLLRQEGLAFDQPPEDRTELDPVAVVVLEVRARDTALDPTRAAMIDAAVAKFTKRFGDDAALIEIADR*
C688J35102_1203617053	3300002568	Soil	MSQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVAEVAVVVLAVRAGDQVLDRSLDAMIDAAVATFVKRFGDDVASVEIADSGDQR*
C688J35102_1207658322	3300002568	Soil	MPQTITYRGPVVLAGALTHLLREEGVEFDQPREDRTVFAEVVVVVLAVRAGDKVLDRTLDAMIDAAVAKFKKRFGDDIASVETGDGEDQR*
C688J35102_1208570272	3300002568	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFNQPREDRTEVVGVAVVVLVVRAGDEVLDRTLDAMIDAAVARFKKRFGDDAASVEIADSDQL*
Ga0062593_1003892712	3300004114	Soil	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTI
Ga0062593_1020129531	3300004114	Soil	TYRGPRVLVGALAHLLREEGVEFDQPREDRTEVLAVAEVVMAVRAGDEMLDRTLDAAVEAAVAKFEKRFGDVASIEVADDEDQG*
Ga0062593_1035014601	3300004114	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLAVRAGDKELDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR*
Ga0062589_1013664432	3300004156	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRAGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR*
Ga0062589_1018999501	3300004156	Soil	MPQTITYRGPTVLVGALAHLLREEGLEFDQPLEDRRIVAEMAVVVLEVRAGGKVPDRGLDAMIDTAVGRFKKRFGDDFASIEIADSEGK
Ga0062592_1016081342	3300004480	Soil	MPKTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVPVAVVVLTVRAGDKALDRTLDAMIETAVAKFKKRFGDDGASFEIADGEDQR*
Ga0062591_1016839691	3300004643	Soil	RGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS*
Ga0062594_1004246061	3300005093	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTDVVEVAVVVLVVRAGDNVLDRTLDAMIDAAVGRFKKRFGDDVASVEIADSEDQP*
Ga0062594_1020553841	3300005093	Soil	MPKTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVPVAVVVLTVRAGDKALDRTLDAMIETAVAKFKKRFGDDGASFEIAGGEDQR*
Ga0062594_1023969561	3300005093	Soil	MPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASI
Ga0062594_1028375491	3300005093	Soil	MPQTITYRGPTVLVGALAHLLREEGLEFDQPLEDRRVVAEMAVVVLEVRAGDKVPDRGLDAMIETAVGRFKERFGDDFASIEIADSEGQR*
Ga0070661_1017747182	3300005344	Corn Rhizosphere	AGRHAVRRSPMPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFAGSGPR*
Ga0070667_1000906524	3300005367	Switchgrass Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEFGRRS*
Ga0070700_1007833932	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTDVVEVAVVVLVVRAGDKVLDRTLDAMIDAAVGRFKKRFGDDVASVEIADSEDQP*
Ga0070700_1013422502	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTITYRGPTVLVGALAHLLREEGLEFDQPLEDRRVVAEMAVVVLEVRAGDKVPDRGLDAMIDTAVGRFKKRFGDDFASIEIADSEGKR*
Ga0070694_1007955031	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS*
Ga0070707_1001584684	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTDVLAVAVVVMTVRAGDQMLDRTLDATIEAAVAKFKKRFGDDAASIEVAGD*
Ga0070679_1004033251	3300005530	Corn Rhizosphere	TITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS*
Ga0068855_1020912031	3300005563	Corn Rhizosphere	DPATEAGRHAVRRSPMPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFAESGPR*
Ga0068854_1018002951	3300005578	Corn Rhizosphere	VLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS*
Ga0068856_1005515521	3300005614	Corn Rhizosphere	MPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFAESGPR*
Ga0070702_1005996111	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	GWRSLMLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS*
Ga0070702_1017601041	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFDQPGEDRTEVVEVAVVVLAVRAGDNVLDRTLDAMIDAAVGRFKKRFGDDVASVEIADSEDQP*
Ga0068852_1015221142	3300005616	Corn Rhizosphere	VPQTITYRGPPVLVGALAHLLRQEGLEFKQPRNDRTQLAAVVVVVLTVRSGDNVPDRTLDAMIDTAVAKFRKRFGDDAASVDVGNGEDEPQRDL
Ga0068864_1023496301	3300005618	Switchgrass Rhizosphere	HLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFAESGPR*
Ga0070715_104067301	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHFLRKEGVEFHQPRENRTEVVEVAVVVLAVTAGDEGLDRTLDAMIDAAVAKFKNRFGDDVTSIEIADGADQS*
Ga0097621_1006091883	3300006237	Miscanthus Rhizosphere	MPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGD
Ga0097621_1012075302	3300006237	Miscanthus Rhizosphere	RTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS*
Ga0075530_10955993	3300006792	Arctic Peat Soil	MPQTITYRGPRVLVGALAHLLREEGAEFDQPREDRTEVVEVAVVVLAVRAGDKVFDRTLDAMVEAAVAKFKKRFGDDVASVEITDDEDQR*
Ga0075424_1008228352	3300006904	Populus Rhizosphere	ALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESALSRFRTRFGDDTIFLEVAEVGRRS*
Ga0105251_101395912	3300009011	Switchgrass Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRLRTRFGDDTIFLEVAEVGRRS*
Ga0105245_123087602	3300009098	Miscanthus Rhizosphere	MAQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFAESGPR*
Ga0105242_104468921	3300009176	Miscanthus Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTISLEVAEVGRRS*
Ga0116240_101765373	3300010349	Anaerobic Digestor Sludge	MAQTITYRGPRVLVGALAHLLREEGVAFDQPPEDRTDLDPVAVVLIEVRAGEALGPPPGAMIDAAVAKFTKRFGDDTALIEIADTEMRPPS*
Ga0150985_1176378491	3300012212	Avena Fatua Rhizosphere	MPQTITYRGPRVLVGALAQLLREEGVEFKQPREDRTEVVEVAVVVFVVRAGDKVLDRTLDAMMDAAVARFKKRFGDDVASVEIADSDQR*
Ga0150985_1209693361	3300012212	Avena Fatua Rhizosphere	VITTPPEGIPMPQTITYRGPVVLAGALAHLLREEGVEFDQPQEDRTIFAEVVVVVLTVSAGDKVLDRTLDAMIEAAVAKFKKRFGEDIASIEAVDAQDQP*
Ga0157286_103140101	3300012908	Soil	MPQTITYRGPTVLVGALAHLLREEGLEFDQPLEDRRVVAEMAVVVLEVRAGGKVPDRGLDAMIDTAVGRFKKRFGDDFASIEIADSEGKR*
Ga0157290_103684632	3300012909	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVPVAVVVLTVRAGDKALDRTLDAMIETAVAKFKRRFGDDGASFEIADGEDQR*
Ga0164241_112628342	3300012943	Soil	YRGPRVLVGALAHLLREEGVEFDQPREDRTEVAEVAVVVLAVRAGDKVLDRTLDDMIDAAVARFKKRFGDNVASVEIAEG*
Ga0164308_101958822	3300012985	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTEVVEVAVVVLAVRAGDKVLDRTLDAMIAAAVARLKKRFGDDVASVEIADSEDQR*
Ga0157374_107006222	3300013296	Miscanthus Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTISLEVAEVGRIS*
Ga0157375_115712631	3300013308	Miscanthus Rhizosphere	VGALAHLLRQEGLEFDQPLEDRRVVAEMAVVVLEVRAGGKVPDRGLDAMIETAVGRFKERFGDDFASIEIADSEGQR*
Ga0075305_10759951	3300014295	Natural And Restored Wetlands	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREERTEIAEVAVVVLEVRAGDNVPDRTLGATVDAAVAKFKKRFGDQAASVEIEDG*
Ga0157376_115570371	3300014969	Miscanthus Rhizosphere	MPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEADVAKFTKRFGDDSASIEFAESGPR*
Ga0173483_106009191	3300015077	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRTGGKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR*
Ga0132256_1010294791	3300015372	Arabidopsis Rhizosphere	GPPVLAGALAHLLREEGVEFKQPRDDRTEVAEAVVVVLTVTAGDNAPDRTLDAKIDAALAKFKKRFGEDATSVDVADSDDGR*
Ga0132255_1053183631	3300015374	Arabidopsis Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTEVVEVAVVVLPVSAGDKVLDRTLDAMIDTAVTKFKNRFGDDVAAVEITDDEDQR*
Ga0163161_106289482	3300017792	Switchgrass Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLE
Ga0190265_106394263	3300018422	Soil	MPRTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRAGTNELDRTLDARVEAAIARFNKRFGDDAASVEITDDED
Ga0190265_113891741	3300018422	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTELVEVAVVVLAVRAGDTVPDRSLDAMIEAAVARFKKRFGDDVASVEMTDDEDQP
Ga0190272_104998512	3300018429	Soil	MPRTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVLEVAVVVLVVRAGANELDRTLDARVEAAIARFKKRFGDDAASVEMTDDKD
Ga0190275_100041737	3300018432	Soil	MPRTLTYRGPRVLVGALAHLLREEGVEFDQPREDRTEVLEVAVVVLVVRAGTNELDRTLDARVEAAIARFKKRFGDDAASVEMTDDKD
Ga0190275_127009951	3300018432	Soil	MPQTITYRGPRVLVGALAHLLREEGLEFDQPREDRTELAEVAVVVLAVRAGDTVPDRTLDAMIEAAVARFKKRFGDDAASVEVTDDEDQP
Ga0190275_133856931	3300018432	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFHQPREDRTEVAEVAVVVLAVRAGDQALDRTLDAMIDAAVARFKKR
Ga0190268_105938981	3300018466	Soil	MPKTITYRGPRVLVGALAHLLREEGVEFDQPGEDRTEVVEVAVVVLAVRAGDKVLDRTLDAMIDAAVAKFTKRFGDDVAAVEIADN
Ga0190270_101291752	3300018469	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPRENRTEVVEVAVVVLVVRAGDGVLDRTLDAMIDAAVARFKKRFGDDVASVEIADS
Ga0190270_113333261	3300018469	Soil	MPKTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVPVAVVVLTVRAGDKALDRTLDAMIETAVAKFKKRFGDDGASFEIADGEDQR
Ga0190270_118003921	3300018469	Soil	MPRTITYWGPPVLVGALAHLLREEGLEFDQPLEDRRVVVAVAVVVLEVSAGDKGPDRALDAMIDTAVGRFKKRFGDDFASIEIADSDGQR
Ga0190270_127177761	3300018469	Soil	MPQTITYRGPTVLVGALAHLLREEGLEFHQPSEDRRVVAEMAVVVLEVRAGGKVPDRALDDMIDTAVWRFKKRFGDDYASIEIADSEGQR
Ga0190271_106516113	3300018481	Soil	MSQTITYRGPRVLVGALAHLLREEGVEFDQPGEDRTEVVEVAVVVLAVRAGDKVLDRTLDAMIDAAVAKFKKRFGDDAASVEIADSEDQR
Ga0173481_103357912	3300019356	Soil	MPKTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVPVAVVVLTVRAGDKALDRTLDAMIETAVAKFKKRFGDDGASFEIAGGEDQR
Ga0190264_100564212	3300019377	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDRPREDRTEVVEVAVVVLAVRAGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEISDDEDQR
Ga0190264_101666312	3300019377	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPRENRTEVVEVAVVILVVRAGDGVLDRTLDAMIDAAVAKFTKRFGDDVAAVEIADN
Ga0190264_109377011	3300019377	Soil	MPQTITYRGPRVLVGALAHLLREEGLEFDQPREDRTELAEVAVVVMAVRAGNTVPDRALDAMIEAAVARFKKRFG
Ga0222622_109313711	3300022756	Groundwater Sediment	MPQTIITYRGPVVLAGALAHLLREEGVEFDQPREDRRVVAEVVVVVLAVSAGDKVLDRTLGAMIDAAVAKFKKRFGEDIASIEIVDSEGQR
Ga0209587_11154702	3300025721	Arctic Peat Soil	MPQTITYRGPRVLVGALAHLLREEGAEFDQPREDRTEVVEVAVVVLAVRAGDKVFDRTLDAMVEAAVAKFKKRFGDDVASVEITDDEDQR
Ga0207688_100467012	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS
Ga0207688_104533542	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTTITYRGPVVLAGAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFA
Ga0207671_103860291	3300025914	Corn Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVARFRTR
Ga0207687_115432292	3300025927	Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTDVVEVAVVVLVVRAGDKVLDRTLDAMIDAAFARFKKRFGDDVASV
Ga0207709_107139392	3300025935	Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTDVVEVAVVVLVVRAGDNVLDRTLDAMIDAAVGRFKKRFGDDVASVEIADSEDQP
Ga0207704_101497512	3300025938	Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTDVVEVAVVVLVVRAGDKVLDRTLDAMIDAAVGRFKKRFGDDVASVEIANSEDQR
Ga0207691_113888431	3300025940	Miscanthus Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDD
Ga0207640_120009131	3300025981	Corn Rhizosphere	RGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEVGRRS
Ga0207658_106450211	3300025986	Switchgrass Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFGDDTIFLEVAEFGRRS
Ga0207708_108771952	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPQTITYRGPRVLVGALAHLLREEGVEFKQPREDRTDVVEVAVVVLVVRAGDKVLDRTLDAMIDAAVGRFKKRFGDDVASVEIADSEDQP
Ga0207702_103374271	3300026078	Corn Rhizosphere	MLRTITYRGPPVLVGALAHLLREEGVEFERPREDRTGVAAEVVVVLTVRAGDAAPDRPLDELIESAVSRFRTRFG
Ga0207676_120132961	3300026095	Switchgrass Rhizosphere	GAFAHLLREEGVEFDRPREDRRSVEETVVVILTVRAGDNVLDRTLDAMIEAAVAKFTKRFGDDSASIEFAESGPR
Ga0209023_100238335	3300027870	Freshwater And Sediment	MPQTITYRGPRVLVGALAHLLRQEGLAFDQPPEDRTELDPVAVVVLEVRARDTALDPTRAAMIDAAVAKFTKRFGDDAALIEIADR
Ga0209023_100982174	3300027870	Freshwater And Sediment	MPQTITYRGPRVLVGALAHLLRQEGLAFDQPPEDRTELDPVAVVVLEVRAADQAHDLTRATMIDAAVAKFTKRFGDDAALIEITDS
Ga0247820_111470511	3300028597	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRAGDKVLDQTLDAMIEAAVTRFKKRFGDDVASIEITDDEDQR
Ga0307291_11191451	3300028707	Soil	MPLTITYRGPRVLVGALAHLLREEGVEFHQPRENRTEVVEVSVVVLAVRAGDKVLDRTLNAMIDAAVAKFKNRFGDDVASIEIADREDQR
Ga0307306_101894821	3300028782	Soil	LAHLLREEGVEFHQPRENRTEVVEVSVVVLAVRAGDKVLDRTLNAMIDAAVAKFKNRFGDDVASIEIADREDQR
Ga0307503_101089353	3300028802	Soil	MPKTITYRGAAVLAGALAHLLREEGVEFDQPREQRTGVAEVAVTVIDVRAGETVSDEALGAMIGAAVAKFEKRFGDDAAAIEITNGDGQG
Ga0302259_11455301	3300028861	Fen	MPHTITYRGPKVLAGAFAHLLREEGVKFDRPREDRTVEAVVVVLAVRAGDKVPDRTLDAMIDAAVAKFKKRFGDDVASIEIADSEGQR
Ga0311347_105164311	3300029923	Fen	MPHTITYRGPKVLAGAFAHLLREEGVKFDRPREDRTVEAVVVVLAVRAGDKVPDRTLDAMIDAAVAKFKKRFGDDVASIE
Ga0308201_100985922	3300031091	Soil	MPQAITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVVAVRAGDKVLDRTLDAMLDAAVAKFKNRFGDDAASIEVADSEDRP
Ga0299913_100110037	3300031229	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRAGDKVLDRTLDAMIEAAVARFKKRFGDDVATVENTGDEDQP
Ga0299913_100161275	3300031229	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVAEVALVVLAVRGGDKELDRTLDAMIEAAVARFEKRFGDDVASVEITHDEDHR
Ga0299913_112442242	3300031229	Soil	MPRTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLAVKAGDTVLDRTLDAMIEAAVARFKKRFGDDVASIEVADDEDQR
Ga0307413_112499252	3300031824	Rhizosphere	MARSPMPQTINYQGPRVLVGALAHLLREEGLTFDQPREDRTEVVAVAVVDLVVSAEEEPPDRTLDAMIEAAVARFTKRFGDGVASIQSAPDDRF
(restricted) Ga0255338_10191212	3300031825	Sandy Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPRENRTDLVPVATVVLAVRAGDGVPDRTLDAMIEAAVAKFTKRFGDDVASVEIVRDEDQR
Ga0310892_106856181	3300031858	Soil	ITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRTGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR
Ga0310900_102533942	3300031908	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVLVVRTGDKVLDRTLDAMIEAAVARFKKRFGDDVAAVEITDDEDQR
Ga0308175_1002563882	3300031938	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFEQPRENRSEVVEVAVVVVTVRAGDKVLDRTLDDLIDAAVTKFKNRFGDDVASIEIADSEDQR
Ga0308175_1015702412	3300031938	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPRENRSEVAEVAVVVVVVRAGDKVPDQTLDALIDAAVTKFKNR
Ga0308175_1032590551	3300031938	Soil	MATQTDSPPSTPSTEVPSPRTVTYRGPTVLAGALAHLLRAEGLEFEQPRVDRREVAEKVDVVMAVTAGDNVVDRTLDDMIETALAKFRKRFG
Ga0308174_101054651	3300031939	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPRENRSEVVEVAVVVVAVRAGDKVLDRTLDSLIDAAVTKFKNRFGDDVASIEIADSEDPR
Ga0308174_115797201	3300031939	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPRENRSEVAEVAVVVVVVRAGDKVPDQTLDALIDAAVTKFKNRFGDDAASIEIADDEDQR
Ga0308173_104615252	3300032074	Soil	MPKTITYRGPRVLVGALAHLLREEGVEFDQPRENRSEVVEVAVVVVAVRAGDKVLDRTLDSLIDAAVTKFKNRFGDDVASIEIADSEDPR
Ga0326721_101349241	3300032080	Soil	MPQTITYRGPRVLVGALAHLLREEGVEFDQPREDRTEVVEVAVVVMVVRAGDDVVDRTLDAMIEAAVVRFKKRFGDGVASVEIADDEDQR
Ga0372943_0149948_1139_1411	3300034268	Soil	MPQTITYQGPMVLAGAFAHLLRQEGVDFDRPREDRTGVVEAVVVVLAVRAGDTLIDGTLDARIDAAFAKFEKRFGHDVASIELSHSEGQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters