Metagenome / Metatranscriptome Family F081824

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081824
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	71 residues
Representative Sequence	MSPPQRRIEDRIRELCANAVTAADGDLEPALQELSQLLRGTIEHMRESATRLLVEGRPLPEPRRRANDNEV
Number of Associated Samples	90
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	28.95 %
% of genes near scaffold ends (potentially truncated)	45.61 %
% of genes from short scaffolds (< 2000 bps)	82.46 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.895 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.912 % of family members)
Environment Ontology (ENVO)	Unclassified (35.965 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.281 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.49% β-sheet: 0.00% Coil/Unstructured: 50.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF13581	HATPase_c_2	2.63
PF07730	HisKA_3	1.75
PF01548	DEDD_Tnp_IS110	1.75
PF00486	Trans_reg_C	1.75
PF13365	Trypsin_2	1.75
PF00072	Response_reg	0.88
PF00027	cNMP_binding	0.88
PF00294	PfkB	0.88
PF01833	TIG	0.88
PF03544	TonB_C	0.88
PF06782	UPF0236	0.88
PF00392	GntR	0.88
PF02586	SRAP	0.88
PF04545	Sigma70_r4	0.88
PF00953	Glycos_transf_4	0.88
PF06452	CBM9_1	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.75
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.75
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.75
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.75
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.75
COG0472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
All Organisms	root	All Organisms	42.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
cellular organisms	root	All Organisms → cellular organisms	42.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.07 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.30 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.51 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.30 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.51 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.30 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.51 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.30 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.88 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.30 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.88 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.30 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.88 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.30 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.88 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.88 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0970365	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_103620099	Not Available	502	Open in IMG/M
3300000650\|AP72_2010_repI_A1DRAFT_1021245	Not Available	562	Open in IMG/M
3300000789\|JGI1027J11758_12369492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300000789\|JGI1027J11758_13071128	Not Available	616	Open in IMG/M
3300000955\|JGI1027J12803_102023048	Not Available	757	Open in IMG/M
3300000955\|JGI1027J12803_104304466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1138	Open in IMG/M
3300001867\|JGI12627J18819_10437151	Not Available	534	Open in IMG/M
3300004139\|Ga0058897_10983930	Not Available	702	Open in IMG/M
3300004153\|Ga0063455_101290266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300004631\|Ga0058899_12148151	Not Available	632	Open in IMG/M
3300004633\|Ga0066395_10016471	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2857	Open in IMG/M
3300004633\|Ga0066395_10071815	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1596	Open in IMG/M
3300004633\|Ga0066395_10619887	Not Available	635	Open in IMG/M
3300005174\|Ga0066680_10801779	Not Available	567	Open in IMG/M
3300005177\|Ga0066690_10789631	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300005332\|Ga0066388_100465046	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1905	Open in IMG/M
3300005434\|Ga0070709_10005206	All Organisms → cellular organisms → Bacteria → Acidobacteria	7035	Open in IMG/M
3300005434\|Ga0070709_11487136	Not Available	550	Open in IMG/M
3300005435\|Ga0070714_100180992	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300005435\|Ga0070714_100689767	Not Available	985	Open in IMG/M
3300005435\|Ga0070714_101230003	Not Available	731	Open in IMG/M
3300005436\|Ga0070713_101726907	Not Available	607	Open in IMG/M
3300005437\|Ga0070710_10289390	Not Available	1066	Open in IMG/M
3300005439\|Ga0070711_100037884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3238	Open in IMG/M
3300005538\|Ga0070731_10118195	Not Available	1756	Open in IMG/M
3300005554\|Ga0066661_10133267	All Organisms → cellular organisms → Bacteria → Acidobacteria	1510	Open in IMG/M
3300005554\|Ga0066661_10845310	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	535	Open in IMG/M
3300005555\|Ga0066692_10005886	All Organisms → cellular organisms → Bacteria	5463	Open in IMG/M
3300005555\|Ga0066692_10746803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300005557\|Ga0066704_10712288	Not Available	631	Open in IMG/M
3300005569\|Ga0066705_10943130	Not Available	512	Open in IMG/M
3300005586\|Ga0066691_10371061	Not Available	848	Open in IMG/M
3300005598\|Ga0066706_10728852	Not Available	787	Open in IMG/M
3300005602\|Ga0070762_10937475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300005764\|Ga0066903_100137750	All Organisms → cellular organisms → Bacteria	3459	Open in IMG/M
3300006028\|Ga0070717_10264445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1522	Open in IMG/M
3300006028\|Ga0070717_10618733	Not Available	982	Open in IMG/M
3300006163\|Ga0070715_10269191	Not Available	898	Open in IMG/M
3300006175\|Ga0070712_100045317	All Organisms → cellular organisms → Bacteria	3036	Open in IMG/M
3300006175\|Ga0070712_101412895	Not Available	607	Open in IMG/M
3300006175\|Ga0070712_101460915	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300006806\|Ga0079220_10185469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1185	Open in IMG/M
3300006854\|Ga0075425_100144393	All Organisms → cellular organisms → Bacteria	2725	Open in IMG/M
3300006903\|Ga0075426_10492338	Not Available	910	Open in IMG/M
3300006954\|Ga0079219_10676359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300007076\|Ga0075435_101284010	Not Available	641	Open in IMG/M
3300009090\|Ga0099827_10058748	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300010048\|Ga0126373_10552149	Not Available	1200	Open in IMG/M
3300010360\|Ga0126372_10550909	Not Available	1095	Open in IMG/M
3300010361\|Ga0126378_10794605	Not Available	1056	Open in IMG/M
3300010361\|Ga0126378_12839957	Not Available	553	Open in IMG/M
3300010366\|Ga0126379_10171575	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
3300010376\|Ga0126381_101792018	Not Available	886	Open in IMG/M
3300010376\|Ga0126381_102508304	Not Available	739	Open in IMG/M
3300010376\|Ga0126381_104207043	Not Available	558	Open in IMG/M
3300010398\|Ga0126383_11275966	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	824	Open in IMG/M
3300010398\|Ga0126383_11377858	Not Available	795	Open in IMG/M
3300012199\|Ga0137383_10262710	Not Available	1264	Open in IMG/M
3300012208\|Ga0137376_10037766	Not Available	3881	Open in IMG/M
3300012357\|Ga0137384_10308953	Not Available	1314	Open in IMG/M
3300012359\|Ga0137385_10644717	Not Available	887	Open in IMG/M
3300012961\|Ga0164302_11060628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300012971\|Ga0126369_10087641	All Organisms → cellular organisms → Bacteria	2781	Open in IMG/M
3300012971\|Ga0126369_10634935	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300012986\|Ga0164304_10413589	Not Available	962	Open in IMG/M
3300015371\|Ga0132258_10063787	All Organisms → cellular organisms → Bacteria → Acidobacteria	8505	Open in IMG/M
3300015372\|Ga0132256_102120509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300015374\|Ga0132255_101034074	Not Available	1233	Open in IMG/M
3300016270\|Ga0182036_11134820	Not Available	648	Open in IMG/M
3300016319\|Ga0182033_10178872	All Organisms → cellular organisms → Bacteria	1667	Open in IMG/M
3300016341\|Ga0182035_11938965	Not Available	535	Open in IMG/M
3300016357\|Ga0182032_10597363	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	918	Open in IMG/M
3300020579\|Ga0210407_10012599	All Organisms → cellular organisms → Bacteria → Acidobacteria	6288	Open in IMG/M
3300020579\|Ga0210407_10075853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2528	Open in IMG/M
3300021088\|Ga0210404_10076009	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300021088\|Ga0210404_10564759	Not Available	645	Open in IMG/M
3300021180\|Ga0210396_10844411	Not Available	783	Open in IMG/M
3300021180\|Ga0210396_11085448	Not Available	674	Open in IMG/M
3300021403\|Ga0210397_11203115	Not Available	589	Open in IMG/M
3300021432\|Ga0210384_11434792	Not Available	595	Open in IMG/M
3300021559\|Ga0210409_10074111	All Organisms → cellular organisms → Bacteria	3161	Open in IMG/M
3300021560\|Ga0126371_10137269	All Organisms → cellular organisms → Bacteria → Acidobacteria	2492	Open in IMG/M
3300021560\|Ga0126371_10351205	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300022525\|Ga0242656_1097000	Not Available	573	Open in IMG/M
3300022709\|Ga0222756_1089200	Not Available	514	Open in IMG/M
3300022715\|Ga0242678_1056924	Not Available	578	Open in IMG/M
3300022717\|Ga0242661_1112853	Not Available	579	Open in IMG/M
3300025905\|Ga0207685_10263463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	839	Open in IMG/M
3300025928\|Ga0207700_11304909	Not Available	647	Open in IMG/M
3300026334\|Ga0209377_1034530	Not Available	2388	Open in IMG/M
3300027371\|Ga0209418_1083445	Not Available	573	Open in IMG/M
3300027576\|Ga0209003_1057942	Not Available	698	Open in IMG/M
3300027765\|Ga0209073_10448464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300027821\|Ga0209811_10237401	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300027842\|Ga0209580_10270736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300027882\|Ga0209590_10680402	Not Available	659	Open in IMG/M
3300027884\|Ga0209275_10043035	Not Available	2138	Open in IMG/M
3300030847\|Ga0075405_11779307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300031057\|Ga0170834_105939233	Not Available	1046	Open in IMG/M
3300031590\|Ga0307483_1023075	Not Available	620	Open in IMG/M
3300031715\|Ga0307476_10666387	Not Available	771	Open in IMG/M
3300031715\|Ga0307476_11259783	Not Available	540	Open in IMG/M
3300031718\|Ga0307474_11102082	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300031740\|Ga0307468_100282516	Not Available	1192	Open in IMG/M
3300031753\|Ga0307477_10049352	All Organisms → cellular organisms → Bacteria	2893	Open in IMG/M
3300031754\|Ga0307475_11167949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300031833\|Ga0310917_10733188	Not Available	669	Open in IMG/M
3300031962\|Ga0307479_10401390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1355	Open in IMG/M
3300031962\|Ga0307479_11357634	Not Available	670	Open in IMG/M
3300032001\|Ga0306922_10688379	Not Available	1077	Open in IMG/M
3300032174\|Ga0307470_10133525	Not Available	1489	Open in IMG/M
3300032174\|Ga0307470_10613192	Not Available	816	Open in IMG/M
3300032205\|Ga0307472_102219541	Not Available	554	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.74%
Host-Associated	Host-Associated	5.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.74%
Plants	Host-Associated → Plants	5.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.30%
Loam	Environmental → Terrestrial → Soil → Loam	25.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.16%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.28%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.53%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.39%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.63%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000650	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A1	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_09703652	2228664022	Soil	MSLPHRRIEDRIRELCAKAVAATDGDLEPALRELTELLRGTIEHMRKGAKSLLVEGKPLLGPRRRAND
INPhiseqgaiiFebDRAFT_1036200991	3300000364	Soil	CAKAVVAPDGDLEPILQELLQLLCSTISHMRDSATSLLVEGKPLSEPRRRATDNEVGARVVESER*
AP72_2010_repI_A1DRAFT_10212451	3300000650	Forest Soil	MPHHRRIEDRIRQLCAKVADATDGDLEPALRELSQLLRGTVEHMRNSAASLLLKRKALSEPRRREADNEA*
JGI1027J11758_123694921	3300000789	Soil	EDRIRELCAKAVASSDADLEPALQELSQLVRRTIEHMRESAKRLLVEGTPLPEPRRRVTDNEV*
JGI1027J11758_130711281	3300000789	Soil	MSLPHRRIEDRIRELCAKAVAATDGDLEPALRELTELLRGTIEHMRKGAKSLLVEGKPLLGPRRRAN
JGI1027J12803_1020230482	3300000955	Soil	MSLPHRRIEDRIRELCAKAVAATDGDLEPALRELTELLRGTIEHMRKGAKSLLVEGKPLLGPRRRAND*
JGI1027J12803_1043044663	3300000955	Soil	MPTSQRRIEDRIRELCANAVTATDGDLEPALQELSQLLRGTIEHIRESATRLLVEGTPLLEPRRRAND*
JGI12627J18819_104371511	3300001867	Forest Soil	MSPPERRIEDRIRYLCAKVATAPDGDLETALRELSQLLRGTIEHMRESATKLLVEGTPLPEPRRRANDNP
Ga0058897_109839301	3300004139	Forest Soil	PQRRIEDRIRELCAKAVVATDGDLEPALRELSELLRGTIEHMRKGAKSLLVEGKPLLEPRRRAND*
Ga0063455_1012902662	3300004153	Soil	SMSPPQRRIEDRIQELCAKAVTSTDSDLEPALQELSQLLGATIEHMRESATRLLVEGTPLLEPRRRSTDNVV*
Ga0058899_121481512	3300004631	Forest Soil	MSPPQRRIEDRIRELCAKAKPATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV*
Ga0066395_100164716	3300004633	Tropical Forest Soil	MSLPQRRIEDRIRELCAKAASAADGDLEPALQELTQLLRGTIKHMRESATSLLVKGKPLSEPRRRATDNEVGRGGLRP*
Ga0066395_100718152	3300004633	Tropical Forest Soil	MSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLLEPRRRENDNKA*
Ga0066395_106198872	3300004633	Tropical Forest Soil	PQRRIEDRIRELCAKAASATDGDLEPALQELTQLLRGTIEHMRESATSLLIKGQPLSEPRRRATDNEVG*
Ga0066680_108017791	3300005174	Soil	MSSPQRRIEDRIRELCANATTATNGDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPRRRANDNEFEMEVSNRVEAREG*
Ga0066690_107896312	3300005177	Soil	HRPCNAYQSMSPSQRRIEDRIREFCVNAVTVTDGDPEPALQELSSLLRGTIKHMRESATRLLIEGAPLLEPRRRSSDNEV*
Ga0066388_1004650461	3300005332	Tropical Forest Soil	MPSPNRRIEDRIRYLCAKAAASTDGDLEPVLQELSQLLRTTVDHIRESATRLLIEGAPLPEPRRRASDNDLANHGT
Ga0070709_100052065	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRLMSPPQRRIEDRIRELCAKAASATDGDLEPALQELTQLLRTTIEYMRESAARLLVEGTPLPEPRRRATDNEGRVR*
Ga0070709_114871361	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MVTLRVDVFPRRRIEDRIRELCVTAVTTTDRDPEPDLRELSQLLRATIEHMRESATRLLVEGAPLSEPRRRSSDNVGQPRA*
Ga0070714_1001809922	3300005435	Agricultural Soil	MSPPQRRIEDRIRELCVTAMTATNGDLEPTLLELSQLLGATVAHMRESATRLLVEGAPLSEPRRRSGDNIVKPAALPVRPQESEPA*
Ga0070714_1006897673	3300005435	Agricultural Soil	MLTPTIFMPHHRRIEDRIRKLCAKVADATDGDLEPALRELSQLLRGTVEHMRNSAASLLVEGKPLSEPRRRATDNDR*
Ga0070714_1012300031	3300005435	Agricultural Soil	MSLPQRRIEDRIRELCAKAVAATDGDLEPALRELSELLRGTIEHMRNGAKSLLVEGKPLLEPRRRAND*
Ga0070713_1017269071	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLPPQRRIEDRIRELSVKAVAATDGDLAPALQELSQLLRGTIEHMRTSATKLLIEATPLPEPRRRANDKDAA*
Ga0070710_102893903	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSPPQRRIKDRIRELCANAVAATDGDLEAALQELSQLLRGTIEHMRGSATRLLVEGTPLLEPRRRSTDNEV*
Ga0070711_1000378844	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPPPQRRIEDRIRELCAKTTAADDADLEQALEELSQLLHRTIEHMRKGATTLLVERKALLEPRRRANDNDV*
Ga0070731_101181953	3300005538	Surface Soil	MLTRLMSPPQRRIEDRIRELCAKAASATDGDLEPALQELTQLLRTTIEHMRESATRLLVEGAPLPEPRRRATDNEVA*
Ga0066661_101332671	3300005554	Soil	MSPPQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPRRRANDNECEMEVSNRVEAREG*
Ga0066661_108453101	3300005554	Soil	PQRRIEDRIRELCVNAVTATDGDPEPALQELSSVLRRTIKHMRESATRLLIEGAPLLEPRRRSSDNEV*
Ga0066692_100058861	3300005555	Soil	MSPPQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPRR
Ga0066692_107468031	3300005555	Soil	QRRIEDRIRELCANATTATNGDLEPILQELSQLLRGTIEHMRKGAKSLLVEGKPLLEPRRRENDNEV*
Ga0066704_107122882	3300005557	Soil	MSPPQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPGRRANDNECEMEVSNRVEAREG*
Ga0066705_109431302	3300005569	Soil	MSPLQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPRRRANDNEV*
Ga0066691_103710612	3300005586	Soil	MSPPQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPGRRAKDNEV*
Ga0066706_107288522	3300005598	Soil	MSPPQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPRRRANDNEV*
Ga0070762_109374752	3300005602	Soil	LCANAVAAADGDLEPALQELSQLLRGTIEHMRESATRLLVEGAPLLEPRRRATDNEV*
Ga0066903_1001377505	3300005764	Tropical Forest Soil	MRELCANAVSAGDGDLEPVLQELARLLRGTIDHMRKSATSLLVEGKPLPEPRRRTNDNEAR*
Ga0070717_102644453	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSPPQRRIEDRICELCAKTVAATDGELDLILRELSELLRETIEHVRESATRLLVEGTPLPEPRRRAHDNEV*
Ga0070717_106187333	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSPPQRRIEDRIRELCAKAVASSDADLEPALQELSQLVRRTIEHMRESAKRLLVEGTPLPEPRRRVTDNEV*
Ga0070715_102691911	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	TNASFCVTLTSIEMSPPQRRIEDRIRELCAEAASATNGDLEPTLQELSQLLRETVEHMRKSATRLLVEGTPLSEPRRRANDKLR*
Ga0070712_1000453175	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPPPQRRIEDRIRELCVKAVTSTEADLEPALQELSQLLRGTIQHMRESATRLLVEGNSLSEPRRRANDNEV*
Ga0070712_1014128951	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLFPCNHDSFMSHQRRIEDRIRKLCAKVVDATDDDLKPASRELSQLLDGTIQHMRKSATSLLVEGKPLSE
Ga0070712_1014609151	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MFRVMLTSRPMSPPQRRIEDRICELCAKAATATGDLEPALQELSQLLRGTIEHMRKSATRLLVEAKPLPEPRRRSTDNDGNAV
Ga0079220_101854693	3300006806	Agricultural Soil	MLTSTISMSPPQRRIEDRIRELCAKAASATDGDLEPALQELTELLRGTIEHMRESATSLLVKGQPLSEPRRRATDSEVG*
Ga0075425_1001443932	3300006854	Populus Rhizosphere	MLFPCNHDSFMSHQRRIEDRIRKLCAKVVDATDDDLKPASRELSQLLDGTIQHMRKSATSLLVEGKPLSEPRRRATDHEV*
Ga0075426_104923382	3300006903	Populus Rhizosphere	MSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLPEPRRRETDNEV*
Ga0079219_106763592	3300006954	Agricultural Soil	MSPPQRRIEDRIRELCAKAASATDGDLEPALQELTELLRGTIEHMRESATSLLVKGQPLSEPRRRATDNEVG*
Ga0075435_1012840101	3300007076	Populus Rhizosphere	KRCRTHYSLWGILQTTLPCNAYIHNSMSPPQRRIEDRIRELCAKAVASSDADLEPALQELSQLVRRTIEHMRESAKRLLVEGTPLPEPRRRVTDNEV*
Ga0099827_100587481	3300009090	Vadose Zone Soil	MSPPQRRIEDRIRELCAKAEAATDGDLEQALQELSQLLRGTIEHMRKGATCLLVEVKPLSEPRRRVNDNEV*
Ga0126373_105521491	3300010048	Tropical Forest Soil	MIVPQRRIEDRMRELCANAVSAGDGDLEPVLQELARLLRGTIDHMRKSATSLLVEGKPLPEPRRRTNDNEAR*
Ga0126372_105509093	3300010360	Tropical Forest Soil	MSPPQRRIEDRIRELCAKAVAATDDDLEPALQELSQLLRETVEHMRSSAKRLLVEGTPLPEPRRRANDNEV*
Ga0126378_107946051	3300010361	Tropical Forest Soil	MIVPQRRIEDRMRELCANAVSAGDGDLERVLQELARLLRGTIDHMRKSATSLLVEGKPLPEPRRRTNDNEAW*
Ga0126378_128399571	3300010361	Tropical Forest Soil	MPSPNRRIEDRIRYLCAKAAASTDGDLEPVLQELSQLLRTTVDHIRESATRLLIEGAP
Ga0126379_101715754	3300010366	Tropical Forest Soil	FVWMIVPQRRIEDRMRELCANAVSAGDGDLEPVLQELARLLRGTIDHMRKSATSLLVEGKPLPEPRRRTNDNEAR*
Ga0126381_1017920182	3300010376	Tropical Forest Soil	MIVPQRRIEDRMRELCANAVSAGDGDLEPVLQELARLLRGTIDHMRKSATSLLVEGKPLPEPRRRTNDNEAW*
Ga0126381_1025083041	3300010376	Tropical Forest Soil	NAYITPSMSPPQRRIEDRIRDLCAKAMTTTDGDLEAVLQELSQLLHTTIEHMRKNPTSLLLEGTPLREPRRRANDNEV*
Ga0126381_1042070431	3300010376	Tropical Forest Soil	MAPPQRRIEDRIRELCAKAASAGNGDREPVLQELSLLLRGTVDHMRKSATSLLVEGKPLPEPRRRRNDNETHRGELAGRIRKLD*
Ga0126383_112759662	3300010398	Tropical Forest Soil	MRIPQRRVEDHIRELCEKVLSATDGDLEPVLQELSQLVRGTIEHMRKSATSLLVERTPLLEPRRRAHDNEV*
Ga0126383_113778582	3300010398	Tropical Forest Soil	MSPPNRRIEDRIRELCAQAAAATDGDLEPILQELLQLLRTTVEHLRESATKLLVEGEPLPEPRRRANDNDLVKP*
Ga0137383_102627101	3300012199	Vadose Zone Soil	LCANATTATNGDLEPILQELSQLLRGTIEHMRKGAKSLLVEGKPLLEPRRRENDNEV*
Ga0137376_100377665	3300012208	Vadose Zone Soil	LWGIAQSHFDTYPFKGLFMSSPQRRIEDRIRELCANATTATNGDLEPILQELSQLLRGTIEHMRKGAKSLLVEGKPLLEPRRRENYNEV*
Ga0137384_103089531	3300012357	Vadose Zone Soil	MSPPQRRIEDRIRELCAKAEAATDGDLEQALLELSQLLRGTIEHMRKGATCLLVEVKPLSEPRRRVNDNEV*
Ga0137385_106447171	3300012359	Vadose Zone Soil	PPQRRIEDRIRELCANAEAATDGDLEQALQELSQLLRGTIEHMRKGATCLLVEVKPLSEPRRRVNDNEV*
Ga0164302_110606282	3300012961	Soil	MSPPQRRIEDRIRELCAKAASATNGDLEPTLQELSQLLRETVEHMRKSATRLLVEGTPLS
Ga0126369_100876412	3300012971	Tropical Forest Soil	MAPLQRRIEDRIRELSVNAVSARDGDLEPVLQELARLLRGTVVHMRKSAASLLVEGKPLPEPRRRNNDKRRVELPDRR*
Ga0126369_106349351	3300012971	Tropical Forest Soil	MSPSQRRIEDRIRELCANATSARDGDLEPVLQELSLLLRGTIDHMRKSATSLLVEGKPLP
Ga0164304_104135891	3300012986	Soil	MSPPQRRIEDRIAELCAKAAAATDGDLEPALQELTQLLRTTVEHMRESATRLLIEVTPLPEPRRRSTDNELANGTSE
Ga0132258_100637875	3300015371	Arabidopsis Rhizosphere	MPSPQRRIEDRIRELCGKAVAATDGDLGPALEELSQLLRGTIEHMRTSATKLLVEGAPLPEPRRRANDNEGA*
Ga0132256_1021205091	3300015372	Arabidopsis Rhizosphere	NAGARVMLTPTIFMPHHRRIEDRIRKLCAKVEDATDGDLEPALQELSQLLRGTVEHMRNSAASLLVEGKPLSEPRRRATDNDR*
Ga0132255_1010340741	3300015374	Arabidopsis Rhizosphere	MSPPRRRIEDRIAELCAKAAAATDGDLEPALQELTQLLRTTVEHMRESATRLLIEVTPLPEPRRRSTDNELANGTS
Ga0182036_111348201	3300016270	Soil	MSPPNRRIEDRIRELCARAAAATDGDLEPVLQQLSHLLRTTVEHMRQSATKLLLEGAPL
Ga0182033_101788721	3300016319	Soil	MRELCANAVSAGNGDLERVLQELARLLRGTIDHMRKSATSLLVEGKPLPEPRRRTNDNEA
Ga0182035_119389651	3300016341	Soil	MFPPNRRIEDRIRELCARAAAATDGDLEPVLQQLSHLLRTTVEHMRQSATKLLLEGAPLQEPRRRANDHT
Ga0182032_105973631	3300016357	Soil	MSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLLEPRRRENDKEV
Ga0210407_100125997	3300020579	Soil	MSLPQRRIEDRIRELCAKAVAATDGDLEPALRELSELLRGTIEHMRNGAKSLLVEGKPLLEPRRRAND
Ga0210407_100758535	3300020579	Soil	MSPPQRRIEDRIRELCANAVTAADGDLEPALQELSQLLRGTIEHMRESATRLLVEGRPLPEPRRRANDNEV
Ga0210404_100760093	3300021088	Soil	MSPPQRRIEDRIRELCANAVAATDGDLEAALQELSQLLRGTIEHMRESATRLLVEGTPLLEPRRRSTDNEV
Ga0210404_105647591	3300021088	Soil	MSPQRRIEDRIRELCANAKTATNGDLEPILQELSQLLRGTIEHMRKSATSLFVEGKPLSEPRRRANDNEV
Ga0210396_108444111	3300021180	Soil	RIEDRIRELCAKAKPATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV
Ga0210396_110854481	3300021180	Soil	MSLPQRRIEDRIRELCAKAVVATDGDLEPALRELSELLRGTIEHMRKGAKSLLVEGKPLLEPRRRAND
Ga0210397_112031151	3300021403	Soil	MSPPQRRIEDRIRELCAKAKPATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPL
Ga0210384_114347921	3300021432	Soil	MSPPQRRIEDRIRELCAKAKPATNHDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRTTSKR
Ga0210409_100741112	3300021559	Soil	MSPPQRRIEDRIRELCAKAKPATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV
Ga0126371_101372694	3300021560	Tropical Forest Soil	MSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLLEPRRRENDNKA
Ga0126371_103512052	3300021560	Tropical Forest Soil	MSPPNRRIEDRIRELCAKAAAATDGDLEPILQELLQLLRTTVEHLRESATKLLVEGEPLPEPRRRANDNDLVKP
Ga0242656_10970001	3300022525	Soil	IRELCAKAKPATNHDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV
Ga0222756_10892001	3300022709	Soil	PQRRIEDRIRELCAKAKPATNHDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV
Ga0242678_10569241	3300022715	Soil	ELCAKAKPATNHDLEPILQELSQLLRGTMEHMRTGAITLLVEGKPLSEPRRRANDNEV
Ga0242661_11128532	3300022717	Soil	LGGLFMSPPQRRIEDRIRELCAKAKPATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV
Ga0207685_102634632	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MPPPQRRIEDRIRELCAAAGTATDGELRPILRELSLLLGATIGHIRDSATRLLVAATPLSEPRRRSTDNIVKPSALP
Ga0207700_113049091	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRLMSPPQRRIEDRIRELCAKAASATDGDLEPALQELTQLLRTTIEYMRESAARLLVEGTPLPEPRRRATDNEGRVR
Ga0209377_10345304	3300026334	Soil	MSPPQRRIEDRIRELCANAKPATNDDLEPILQELSQLLRATIEHMRKGATTLLVEGKPLSEPR
Ga0209418_10834451	3300027371	Forest Soil	MSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLPEPRRRETDNEV
Ga0209003_10579421	3300027576	Forest Soil	CLHRHSPMSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLPEPRRRETDNEV
Ga0209073_104484642	3300027765	Agricultural Soil	MSPPQRRIEDRIRELCAKAASATDGDLEPALQELTELLRGTIEHMRESATSLLVKGQPLSEPRRRAT
Ga0209811_102374012	3300027821	Surface Soil	MPPPQRRIEDRIRELCAAAGTATDGELRPILRELSLLLGATIGHIRDSATRLLVAATPLSEPRRRSTDNIVKPSALPVQ
Ga0209580_102707362	3300027842	Surface Soil	MSPPQRRIEDRIRELCANAVTATDGDLEAALQELSQLLRGTIEHMRESATRLLVEGTPLLEPRRRSTDNEV
Ga0209590_106804022	3300027882	Vadose Zone Soil	MSPPQRRIEDRIRELCAKAEAATDGDLEQALQELSQLLRGTIEHMRKGATCLLVEVKPLSEPRRRVNDNEV
Ga0209275_100430354	3300027884	Soil	MALPQRRIEDRIRELCANANTAIDGDLEPTLQELSQLLGVTIEHLRKRAKSLLIERKPLSEPRRRAGDQV
Ga0075405_117793071	3300030847	Soil	MPPSQRRIEDRIRELCANVVTATDGDLEPALQELSQLLRGTIGHMRESATRLLVEGTPLLEPRRRAND
Ga0170834_1059392331	3300031057	Forest Soil	EDRIRELCVKAVTSTEADLEPALQELSQLLRGTIQHMRESATRLLVEGNSLSEPRRRANDNEV
Ga0307483_10230751	3300031590	Hardwood Forest Soil	MTPPQRRIEDRIRGLCAKAVAATDGDLEPALQELSQLLRTTIEHMRDSATRLLVEGTPLPEPRRRANDNEV
Ga0307476_106663872	3300031715	Hardwood Forest Soil	MSPPQRRIEDRIRELCAKAKPATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEVSDGSQHRVEAREI
Ga0307476_112597831	3300031715	Hardwood Forest Soil	RRIEDRIRELCANANTAIEGDLEPTLQELSQLLGETIKHLRNRAKSLLIERKPLSEPRRRAGDNEV
Ga0307474_111020821	3300031718	Hardwood Forest Soil	RRIEDRIRELCANAVTATDGDLEAALQELSQLLRGTIEHMRASATRLLVEGTPLLEPRRRSTDNEV
Ga0307468_1002825162	3300031740	Hardwood Forest Soil	MSLPQRRIEDRIHELCAKAVAAADADLEPALQELSQLLRTTIEHMRESATRLLVEGTPLSEPRRRANDNEA
Ga0307477_100493522	3300031753	Hardwood Forest Soil	MSPPQRRIEDRIRELCAKARRATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPRRRANDNEV
Ga0307475_111679491	3300031754	Hardwood Forest Soil	MSPPQRRIEDRIRELCANAVTATDGDLEAALQELSQLLRGTIEHMRASATRLLVEGTPLLEPRRRSTDN
Ga0310917_107331881	3300031833	Soil	MFPPQRRIEDRIRDLCAKAVDATDGDLEPALQELTQLLRGTIVHMRESAMKLLIEGTPLPEPRRRANDNPILKHDEE
Ga0307479_104013902	3300031962	Hardwood Forest Soil	MSPPQRRIEDRIRELCAKAKSATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEPR
Ga0307479_113576341	3300031962	Hardwood Forest Soil	MSPPQRRIEDRIRELCAKAKRATNDDLEPILQELSQLLRGTIEHMRKGAITLLVEGKPLSEP
Ga0306922_106883792	3300032001	Soil	RHSPMSHPQRRIEDRIRELCAKAVVATDGDLEPVLQELLQLLGGTIDHMRKSATSLLVEGKPLLEPRRRENDNKA
Ga0307470_101335253	3300032174	Hardwood Forest Soil	MSLPQRRIEDRILGLCAKAVAATDGDLEPALQELSQLLRTTIEHMRESATRLLVEGTPLPEPRRRANDNEV
Ga0307470_106131922	3300032174	Hardwood Forest Soil	MSFPQRRIEDRIHELCAKAVAAADADLEPALQELSQLLRTTIEHMRESATRLLVEGTPLSEPRRRANDNEA
Ga0307472_1022195411	3300032205	Hardwood Forest Soil	MSLPQRRIEDRIHELCAKAVAAADADLEPALQELSQLLRTTIEHMRESATRLLVEGTPLSEPRRRANDNEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081824

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences