Metagenome Family F082199

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082199
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	65 residues
Representative Sequence	MSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS
Number of Associated Samples	71
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	45.54 %
% of genes near scaffold ends (potentially truncated)	21.24 %
% of genes from short scaffolds (< 2000 bps)	76.11 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (80.531 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (35.398 % of family members)
Environment Ontology (ENVO)	Unclassified (53.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.522 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.45% β-sheet: 0.00% Coil/Unstructured: 42.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00072	Response_reg	1.77
PF04226	Transgly_assoc	1.77
PF01058	Oxidored_q6	1.77
PF00106	adh_short	0.88
PF04311	DUF459	0.88
PF13340	DUF4096	0.88
PF13458	Peripla_BP_6	0.88
PF00361	Proton_antipo_M	0.88
PF01278	Omptin	0.88
PF02371	Transposase_20	0.88
PF01068	DNA_ligase_A_M	0.88
PF00346	Complex1_49kDa	0.88
PF04185	Phosphoesterase	0.88
PF03404	Mo-co_dimer	0.88
PF07077	DUF1345	0.88
PF00374	NiFeSe_Hases	0.88
PF10066	DUF2304	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	1.77
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	1.77
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	1.77
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.77
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	1.77
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	0.88
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.88
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.88
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.88
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	0.88
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.88
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
All Organisms	root	All Organisms	19.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
cellular organisms	root	All Organisms → cellular organisms	19.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.19 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.77 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.88 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.88 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.53 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.77 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.88 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.88 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002910\|JGI25615J43890_1078246	Not Available	576	Open in IMG/M
3300002917\|JGI25616J43925_10328272	Not Available	568	Open in IMG/M
3300004268\|Ga0066398_10088564	Not Available	699	Open in IMG/M
3300005332\|Ga0066388_100011608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6974	Open in IMG/M
3300005332\|Ga0066388_100109771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3250	Open in IMG/M
3300005332\|Ga0066388_100423625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1974	Open in IMG/M
3300005332\|Ga0066388_103738645	Not Available	777	Open in IMG/M
3300005332\|Ga0066388_103890534	Not Available	762	Open in IMG/M
3300005332\|Ga0066388_107266431	Not Available	556	Open in IMG/M
3300005332\|Ga0066388_108440380	Not Available	513	Open in IMG/M
3300005439\|Ga0070711_100990309	Not Available	721	Open in IMG/M
3300005531\|Ga0070738_10000819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	77485	Open in IMG/M
3300005764\|Ga0066903_100133699	All Organisms → cellular organisms → Bacteria	3499	Open in IMG/M
3300005764\|Ga0066903_100267767	Not Available	2661	Open in IMG/M
3300005764\|Ga0066903_100650993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1842	Open in IMG/M
3300005764\|Ga0066903_102267390	Not Available	1048	Open in IMG/M
3300005764\|Ga0066903_103879653	Not Available	803	Open in IMG/M
3300005764\|Ga0066903_104624014	Not Available	733	Open in IMG/M
3300005764\|Ga0066903_106321395	Not Available	618	Open in IMG/M
3300005764\|Ga0066903_107239401	Not Available	574	Open in IMG/M
3300007255\|Ga0099791_10009669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4013	Open in IMG/M
3300007258\|Ga0099793_10072457	Not Available	1560	Open in IMG/M
3300007258\|Ga0099793_10306212	Not Available	772	Open in IMG/M
3300007788\|Ga0099795_10034037	Not Available	1773	Open in IMG/M
3300009143\|Ga0099792_10634842	Not Available	684	Open in IMG/M
3300009792\|Ga0126374_11085397	Not Available	634	Open in IMG/M
3300010043\|Ga0126380_10055123	Not Available	2171	Open in IMG/M
3300010043\|Ga0126380_10784997	Not Available	777	Open in IMG/M
3300010043\|Ga0126380_12294435	Not Available	501	Open in IMG/M
3300010048\|Ga0126373_13016867	Not Available	525	Open in IMG/M
3300010049\|Ga0123356_12233417	Not Available	684	Open in IMG/M
3300010358\|Ga0126370_10085427	Not Available	2135	Open in IMG/M
3300010358\|Ga0126370_11696956	Not Available	608	Open in IMG/M
3300010359\|Ga0126376_10002840	All Organisms → cellular organisms → Bacteria	9923	Open in IMG/M
3300010359\|Ga0126376_11954309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	627	Open in IMG/M
3300010360\|Ga0126372_10051609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2791	Open in IMG/M
3300010360\|Ga0126372_10400498	Not Available	1252	Open in IMG/M
3300010360\|Ga0126372_11045366	Not Available	831	Open in IMG/M
3300010360\|Ga0126372_11128672	Not Available	804	Open in IMG/M
3300010361\|Ga0126378_10062936	Not Available	3517	Open in IMG/M
3300010361\|Ga0126378_13216282	Not Available	519	Open in IMG/M
3300010362\|Ga0126377_10087442	Not Available	2814	Open in IMG/M
3300010366\|Ga0126379_10564710	Not Available	1219	Open in IMG/M
3300010366\|Ga0126379_13053556	Not Available	560	Open in IMG/M
3300010376\|Ga0126381_101818563	Not Available	879	Open in IMG/M
3300010398\|Ga0126383_10857063	Not Available	993	Open in IMG/M
3300010398\|Ga0126383_13207629	Not Available	534	Open in IMG/M
3300010868\|Ga0124844_1106450	Not Available	1068	Open in IMG/M
3300011269\|Ga0137392_10087620	Not Available	2428	Open in IMG/M
3300012199\|Ga0137383_10051909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2932	Open in IMG/M
3300012199\|Ga0137383_10293297	Not Available	1191	Open in IMG/M
3300012199\|Ga0137383_11291476	Not Available	521	Open in IMG/M
3300012202\|Ga0137363_11426057	Not Available	583	Open in IMG/M
3300012203\|Ga0137399_10244379	Not Available	1470	Open in IMG/M
3300012203\|Ga0137399_11243111	Not Available	627	Open in IMG/M
3300012205\|Ga0137362_11121580	Not Available	668	Open in IMG/M
3300012207\|Ga0137381_11404290	Not Available	590	Open in IMG/M
3300012207\|Ga0137381_11660452	Not Available	529	Open in IMG/M
3300012211\|Ga0137377_10118859	All Organisms → cellular organisms → Bacteria	2518	Open in IMG/M
3300012361\|Ga0137360_10892749	Not Available	766	Open in IMG/M
3300012361\|Ga0137360_11614687	Not Available	553	Open in IMG/M
3300012582\|Ga0137358_10131014	All Organisms → cellular organisms → Bacteria → Proteobacteria	1705	Open in IMG/M
3300012917\|Ga0137395_10412128	Not Available	968	Open in IMG/M
3300012918\|Ga0137396_10755276	Not Available	716	Open in IMG/M
3300012924\|Ga0137413_10251717	Not Available	1213	Open in IMG/M
3300012925\|Ga0137419_10471968	Not Available	992	Open in IMG/M
3300012927\|Ga0137416_10206396	Not Available	1580	Open in IMG/M
3300012927\|Ga0137416_10303293	Not Available	1324	Open in IMG/M
3300012927\|Ga0137416_11229262	Not Available	675	Open in IMG/M
3300012930\|Ga0137407_11340659	Not Available	680	Open in IMG/M
3300012944\|Ga0137410_10092559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2229	Open in IMG/M
3300015242\|Ga0137412_10090491	Not Available	2489	Open in IMG/M
3300015245\|Ga0137409_10234044	Not Available	1638	Open in IMG/M
3300017970\|Ga0187783_10075117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	2488	Open in IMG/M
3300020199\|Ga0179592_10269451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	761	Open in IMG/M
3300021086\|Ga0179596_10004193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	4190	Open in IMG/M
3300021086\|Ga0179596_10084961	Not Available	1406	Open in IMG/M
3300021404\|Ga0210389_10095685	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300021404\|Ga0210389_11181055	Not Available	589	Open in IMG/M
3300021560\|Ga0126371_10015462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6976	Open in IMG/M
3300021560\|Ga0126371_12354855	Not Available	644	Open in IMG/M
3300024288\|Ga0179589_10074568	All Organisms → cellular organisms → Bacteria → Proteobacteria	1337	Open in IMG/M
3300024330\|Ga0137417_1306579	Not Available	1936	Open in IMG/M
3300025916\|Ga0207663_11326972	Not Available	579	Open in IMG/M
3300026351\|Ga0257170_1034552	Not Available	687	Open in IMG/M
3300026351\|Ga0257170_1068644	Not Available	501	Open in IMG/M
3300026355\|Ga0257149_1016514	Not Available	990	Open in IMG/M
3300026356\|Ga0257150_1000459	Not Available	5220	Open in IMG/M
3300026356\|Ga0257150_1011981	Not Available	1184	Open in IMG/M
3300026356\|Ga0257150_1013083	Not Available	1138	Open in IMG/M
3300026481\|Ga0257155_1011405	Not Available	1195	Open in IMG/M
3300026481\|Ga0257155_1084256	Not Available	518	Open in IMG/M
3300026489\|Ga0257160_1047862	Not Available	735	Open in IMG/M
3300026494\|Ga0257159_1012147	Not Available	1358	Open in IMG/M
3300026496\|Ga0257157_1019414	Not Available	1103	Open in IMG/M
3300026498\|Ga0257156_1041559	Not Available	940	Open in IMG/M
3300026508\|Ga0257161_1126961	Not Available	535	Open in IMG/M
3300026515\|Ga0257158_1097803	Not Available	578	Open in IMG/M
3300026551\|Ga0209648_10090756	Not Available	2526	Open in IMG/M
3300026551\|Ga0209648_10091290	Not Available	2517	Open in IMG/M
3300026557\|Ga0179587_10220226	Not Available	1207	Open in IMG/M
3300027512\|Ga0209179_1082210	Not Available	711	Open in IMG/M
3300027706\|Ga0209581_1101050	Not Available	989	Open in IMG/M
3300027874\|Ga0209465_10032874	Not Available	2449	Open in IMG/M
3300028536\|Ga0137415_10301344	Not Available	1407	Open in IMG/M
3300028536\|Ga0137415_10621189	Not Available	892	Open in IMG/M
3300031715\|Ga0307476_10045655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2969	Open in IMG/M
3300031715\|Ga0307476_10872806	Not Available	664	Open in IMG/M
3300031718\|Ga0307474_10305726	Not Available	1226	Open in IMG/M
3300031753\|Ga0307477_11057524	Not Available	531	Open in IMG/M
3300032076\|Ga0306924_10792792	Not Available	1057	Open in IMG/M
3300032174\|Ga0307470_10623940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	810	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.11%
Arthropoda	Host-Associated → Arthropoda	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.11%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.53%
Loam	Environmental → Terrestrial → Soil → Loam	17.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	35.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.16%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25615J43890_10782462	3300002910	Grasslands Soil	MSNLETYREKALECVRAAEEIHGLRERVELLGLASVYMALADYVDRGHEHGAAHRGDQYQDMQKNS*
JGI25616J43925_103282721	3300002917	Grasslands Soil	RGPELRPLLSQRMCEMSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHDAAHRSDQCQDMQKNS*
Ga0066398_100885641	3300004268	Tropical Forest Soil	KALECARAANGVQDSGERIGLLGLASVYMALADYVDHQHEHAARHWSDQDQDMHKDVSAH
Ga0066388_1000116085	3300005332	Tropical Forest Soil	MSNLETYREKAEKCARAADEARGSGERVELLGLASVYMALADYVDRRHEHGEAHRGDQDR
Ga0066388_1001097712	3300005332	Tropical Forest Soil	MSNLETYRDKALKCLHAADEAHDSGERVELLGLASVYMALADYVDRQHEHGAAHRGDQDR
Ga0066388_1004236254	3300005332	Tropical Forest Soil	MSNLETYREKAAECMRAADEVRGSGQRVELLGLASVYMALADYVDRQHEHDTAHRSDQD*
Ga0066388_1037386451	3300005332	Tropical Forest Soil	MSNTETYRENALKCARAADQAHNSGERVELLGLASVYKALADYVDRRHEHGTAHSGDQDQV*
Ga0066388_1038905342	3300005332	Tropical Forest Soil	EMSNLETYREKALKCMRAADDVHYSGERVELLGLASVYMALADYVDHWHEHDTAHRGDQDQDKQNDS*
Ga0066388_1072664312	3300005332	Tropical Forest Soil	SCKKEWQPGSRASPFLRERMCEMSNLETYREKAAECMRAADEVRGSGQRVELLGLASVYMALADYVDRQHEHDTAHRSDQD*
Ga0066388_1084403802	3300005332	Tropical Forest Soil	MCESSLETYREKALKCARAAGEVHDSGERVELLGLASVYMALADYVDRRPDRDQGVQKDN
Ga0070711_1009903091	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSNLETFRDKALECVRAANDGVHDSGERVELLGLASVYTALADYVDHQHEHRTAHGQDQDIQKDS*
Ga0070738_1000081954	3300005531	Surface Soil	MSNVETYREKALKCAHAADRASSTGERAELFGLASIYMALADYVDRTHEHGAAHRGGQDQEMQRSS*
Ga0066903_1001336996	3300005764	Tropical Forest Soil	MCEMSNLETYRQKALKCMRAADEAHYSGERVELLGLASVYMALADYVDRWHEHDTAHRGDQDQDKQNDS*
Ga0066903_1002677675	3300005764	Tropical Forest Soil	MSNLETYREKALECARAAKGVQDSGERIGLLGLASVYRALADYVDHQHEHGAGNWGDQDQDLHKDGSAR*
Ga0066903_1006509933	3300005764	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSSERIGLLGLASVYKALADYVDHQHEHGAGHWGDQDQDMHKDGSVR*
Ga0066903_1022673904	3300005764	Tropical Forest Soil	MSNLETYRDKAAKCIRAADEVRGSGQRVELLGLASVYMALADYVDHQHVDDTAHRGDQDQD*
Ga0066903_1038796531	3300005764	Tropical Forest Soil	MSILETYREKARECVRAADEVHNLSERVELLGLASVYMALADHVERGQHGTAHRGDQNQDMH*
Ga0066903_1046240141	3300005764	Tropical Forest Soil	KQGWQPGSRAWPFLKERMCEMSNLETYRENAVKCAHAAREAHDAGERVELLGLASVYMALADYVDCQHKHDTAHRSD*
Ga0066903_1063213951	3300005764	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSGERIGLLGLASVYMALADYVDHQHEHAARHWSDQDQDMHKDVSAH*
Ga0066903_1072394011	3300005764	Tropical Forest Soil	MSNLETYREKALECVRAADEVHDSGERAELLGLASVYRALADYVDRREHGTAYRGD*
Ga0099791_100096693	3300007255	Vadose Zone Soil	MCEMSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHDAAHRGDQCQDMQKNS*
Ga0099793_100724572	3300007258	Vadose Zone Soil	MCEMSNLETYQEKARECARAANEAHSSAERVELLGLASVYKALADYVDRRHEHGTAHSGDQDQG*
Ga0099793_103062121	3300007258	Vadose Zone Soil	MCEMSNLETYREKALECVRAADAVHDSGERVELLGLASVYMALADYVDRGHEDGTAHRGDQDMQKNN*
Ga0099795_100340374	3300007788	Vadose Zone Soil	MCEMSNLETYREKALECVRAADAVHDSGERVELLGLASVYMALADYVDRGHEHGAAHRGDQYQDMQKDS*
Ga0099792_106348422	3300009143	Vadose Zone Soil	MCEMSNLETYREKALECARAAEEIQGSRERVELLGLASVYMALADYVDRGHEHGAAHRGDQCQDMQKNG*
Ga0126374_110853972	3300009792	Tropical Forest Soil	MCEMSNLETYREKALKCARAADEAHESGERVALLGLARVYMALADYVDRRHEHGMANRGDQDKDMQKGS*
Ga0126380_100551232	3300010043	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSSERIGLLGLASVYKALADYVDHQHEHGAGHWGDQDQDMDKDGSVR*
Ga0126380_107849971	3300010043	Tropical Forest Soil	MREMSNLETYREKALKCARAANDAQNSDERVELLGLASVYKALADYVDRWHEHGVAHSGDQDQG*
Ga0126380_122944351	3300010043	Tropical Forest Soil	MCEMSNLETYREKARECVRAADEVHNSTERVELLGLASVYMALADYVDRGHEYGTAHRGDEDQG*
Ga0126373_130168672	3300010048	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSSERIGLLGLASVYKALADYVDHQHEHGAGHWGDQDQDMHK
Ga0123356_122334171	3300010049	Termite Gut	MSNLETYREKALKCARAADQVHDTAERVELLGLASVYMALADYVDTRHEHASHRGELDHDTKRTV*
Ga0126370_100854273	3300010358	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSGERIGLLGLASVYTALADYVDHQHEHGAGNWGDQDQDMHKDGPAR*
Ga0126370_116969561	3300010358	Tropical Forest Soil	MCEMSNLETYRENAVKCARAAHEAHDVAERVELFGLASVYMALADYVDRQHEHDAGHRSGHEQD*
Ga0126376_100028403	3300010359	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSGERIGLLGLASVYRALADYVDHQHEHGAGNWGDQDQDLHKDGSAR*
Ga0126376_119543092	3300010359	Tropical Forest Soil	MCEMSNLETYREKAEKCARAADEARGSGERVELLGLASVYMALADYVDRQHEHDTAHCSDQD*
Ga0126372_100516093	3300010360	Tropical Forest Soil	MCEMSNLETYREKAAECMRAADEVRGSGQRVELLGLASVYMALADYVDRQHEHDTAHRSDQD*
Ga0126372_104004983	3300010360	Tropical Forest Soil	MCEMSNLETYREKAQECARAADKVHNSRERVELLGLASVYMALADYVDRGHEHGTAHRGDQDMH*
Ga0126372_110453661	3300010360	Tropical Forest Soil	MHEMSIPETYRDKALKCARAADEAHESGERVALLGLARVYMALADYVDRQHEHGAARRCDQDL*
Ga0126372_111286722	3300010360	Tropical Forest Soil	FALPFLSERMCEMSNLETYREKAEKCARAADEARGSGERVELLGLASVYMALADYVDRRHEHGEAHRGDQDR*
Ga0126378_100629361	3300010361	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSGERIGLLGLASVYTALADYVDHQHEHGAGNWGDQDQDLHKDGSAR*
Ga0126378_132162821	3300010361	Tropical Forest Soil	MSNLEAYREKALECARAANGVQDSSERIGLLGLASVYKALADYVDHQHEHGAGHWGDQDQDMDKDGSVR*
Ga0126377_100874426	3300010362	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSGERIGLLGLASVYRALADYVDHQHEHGAGNWGDQDQDMHKDGSVR*
Ga0126379_105647102	3300010366	Tropical Forest Soil	MCEMSNLETYREKALECVRAAAEVHDCGERIELLGLASVYMALSDYVDHQHVHGTAPRGDQD*
Ga0126379_130535561	3300010366	Tropical Forest Soil	MREMSNLETYREKALKCARAADDAQNSDERVELLGLASVYKALADYVDRWHEHGVAHSGDQDQS*
Ga0126381_1018185631	3300010376	Tropical Forest Soil	MVAGVQSFAFSLRMCEMSNLETYRENAAKCVRAADRAHDLRERVELLGLASVYMALADYVDRQHEHGTAHRGDQNQD*
Ga0126383_108570632	3300010398	Tropical Forest Soil	SRRKCEMSNLETYREKALECVRAAAEVHDCGERIELLGLASVYRALSDYVDHQHVHGTAPRGDQD*
Ga0126383_132076291	3300010398	Tropical Forest Soil	MSNLETYREKALECARAAKGVQDSGERIGLLGLASVYRALADYVDHQHEHGAGHWGDQDQDMDKDGSVR*
Ga0124844_11064502	3300010868	Tropical Forest Soil	MAAKCVRAADKARGPGERVELLGLASVYMALADYVDRQHQHDTAHYSDRDQNLSTRQRG*
Ga0137392_100876202	3300011269	Vadose Zone Soil	MCEMSNLESYREKARECVRAADDVHNSGERVELLGLASVYMALADYVDRGHEHGTANRNDQDEEMRKHS*
Ga0137383_100519093	3300012199	Vadose Zone Soil	MSEMSNLETYREKAQKCIRAADEVHNSGERVELLGLASVYMALADYVDRGQHRTAHCGDHDQDMQKHS*
Ga0137383_101271232	3300012199	Vadose Zone Soil	MREMSNLETYREKALKCVHAADEAHNSGERVELLGLAGVYMALADYVDRQHE
Ga0137383_102932971	3300012199	Vadose Zone Soil	MPNPETYREKALKCARAANEAHNSGERVDLLGLASVYKALADYVDRQHEHGTAHSGDQDQG*
Ga0137383_112914761	3300012199	Vadose Zone Soil	ELRPFLSQRMCEMSNLETCKEKAQECVRAAKWVHNSGERVELLGLASVYMALADYVDHRHEHGTARSGDQDQG*
Ga0137363_114260571	3300012202	Vadose Zone Soil	MCEMSNLETYREKALECVRAADAVHNSGERVELLGLASVYMALADYVDRGHEDGTAGRGDQDMQKNN*
Ga0137399_102443791	3300012203	Vadose Zone Soil	MCEMSNLETYREKALECVRAADAVHDSGERVELLGLASVYMALADYVDRGHEDGTAGRGDQDMQKNN*
Ga0137399_112431112	3300012203	Vadose Zone Soil	MSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS*
Ga0137362_111215801	3300012205	Vadose Zone Soil	MCKMPNPETYREKALKCARAANEAHNSGERVDLLGLASVYKALADYVDRQHEHGTAHSGDQDQG*
Ga0137381_114042902	3300012207	Vadose Zone Soil	MREMSNLETYREKALKCVHAADEAHNSGERVELLGLASVYMALADYVDRQHEHGTAHRSDQNQD*
Ga0137381_116604521	3300012207	Vadose Zone Soil	MCEMSNLETCKEKAQECVRAAKWVHNSGERVELLGLASVYMALADYVDHRHEHGTARSGDQDQG*
Ga0137377_101188596	3300012211	Vadose Zone Soil	CKEKAQECVRAAKWVHNSGERVELLGLASVYMALADYVDHRHEHGTARSGDQDQG*
Ga0137360_108927492	3300012361	Vadose Zone Soil	MCEMSNLETYREKALECVRAAEEIHGLRERVELLGLASVYMALADYVDRGHEHGAAHRGDQYQDIQKDS*
Ga0137360_116146871	3300012361	Vadose Zone Soil	MTNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS*
Ga0137358_101310143	3300012582	Vadose Zone Soil	MCEMSNLETYREKALKCVRAADAVHDSGERVELLGLASVYMALADYVDRGHEDGTAHRGDQDMQKNN*
Ga0137395_104121281	3300012917	Vadose Zone Soil	MCEMSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGQHGTAHRGDQDQDMQKDS*
Ga0137396_107552761	3300012918	Vadose Zone Soil	MSNLESYREKARECVRAADKVHNSGKRVELLGLASVYMALADYVDRGHEHGTANRNDQDEEMRKHS*
Ga0137413_102517174	3300012924	Vadose Zone Soil	QRMCEMSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS*
Ga0137419_104719683	3300012925	Vadose Zone Soil	ALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS*
Ga0137416_102063961	3300012927	Vadose Zone Soil	KALECARAAEEIQGSRERVELLGLASVYMALADYVDRGHEDGTAHRGDQDMQKNN*
Ga0137416_103032932	3300012927	Vadose Zone Soil	MCEMSNLESYREKARECVRAADEVHNSGERVELLGLASVYMALADYVDRGHEHGTPNRNDQDEEMRKHS*
Ga0137416_112292621	3300012927	Vadose Zone Soil	MCEMSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHDAAHRSDQCQDMQKNS*
Ga0137407_113406591	3300012930	Vadose Zone Soil	MCEMSILETYQEKARECARAADEGRNSGERIELLCLASVYMALADYVDRRHEHGTAHSGDQDQG*
Ga0137410_100925593	3300012944	Vadose Zone Soil	MCEMSNLESYREKARECVRAADEVHNSGERVELLGFASVYMALADYVDRGHEHGTANRNDQDEEMRKHS*
Ga0137412_100904913	3300015242	Vadose Zone Soil	MCEMSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS*
Ga0137409_102340441	3300015245	Vadose Zone Soil	LECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS*
Ga0187783_100751171	3300017970	Tropical Peatland	LETYREKALECARAADSVHDSRERIGLLGLASVYMALADFVDDQHEHSTVHRNDQGRDVQKDN
Ga0179592_102694511	3300020199	Vadose Zone Soil	MSNLETYQEKARECARAANEAHSSAERVELLGLASVYKALADYVDRRHEHGTAHSGDQDQ
Ga0179596_100041938	3300021086	Vadose Zone Soil	MSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS
Ga0179596_100849612	3300021086	Vadose Zone Soil	MSNLETYREKALECARAAEEIQGSRERVELLGLASVYMALADYVDRGHEHGAAHRGDQCQDMQKNG
Ga0210389_100956854	3300021404	Soil	MSNLETYREKALKCMHAADEAHQSGERVELLGLASVYMALADYVDRRHEQGSAYRADNHRKSP
Ga0210389_111810551	3300021404	Soil	GVATRGICEMSNLETYREKALQCTRAADEVRDPTQRVELLGLASIYMALADYVDARHEHGPAYRDAQD
Ga0126371_100154625	3300021560	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSSERIGLLGLASVYKALADYVDHQHEHGAGHWGDQDQDMHKDGSVR
Ga0126371_123548551	3300021560	Tropical Forest Soil	MSNLETYRQKALKCMRAADEAHYSGERVELLGLASVYMALADYVDRWHEHDTAHRGDQDQDKQNDS
Ga0179589_100745681	3300024288	Vadose Zone Soil	MSNLETYREKALECVRAADAVHDSGERVELLGLASVYMALADYVDRGHEDGTAHRGDQDMQKNN
Ga0137417_13065791	3300024330	Vadose Zone Soil	MSNLETYREKRWNALLRRRGSRFGERVELLGLASVYMALADYVDRGQHGTAHRGTKTKIC
Ga0207663_113269721	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSNLETYREKALQCANAANSVRDSGERVELLGLASVYMALADYVDHPHEHGTLPRGEQH
Ga0257170_10345522	3300026351	Soil	REKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS
Ga0257170_10686441	3300026351	Soil	MSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQ
Ga0257149_10165142	3300026355	Soil	MSNLETYREKALECARAAEEIQGSRERVELLGLASVYMALADYVDRGHEHDAAHRSDQCQDMQKNS
Ga0257150_10004597	3300026356	Soil	MSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGQHGTAHRGDQDQDMQNDS
Ga0257150_10119811	3300026356	Soil	LETYQEKARECARAANEAHSSAERVELLGLASVYKALADYVDRRHEHGTAHSGDQDQG
Ga0257150_10130832	3300026356	Soil	MSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHDAAHRSDQCQDMQKNS
Ga0257155_10114052	3300026481	Soil	SQRMCEMSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGQHGTAHRGDQDQDMQNDS
Ga0257155_10842562	3300026481	Soil	PKRVCEMSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS
Ga0257160_10478622	3300026489	Soil	MSNLETYREKALECARAAEEIQGSRERVELLGLASVYMALADYVDRGHEHGAAHRGDQYLDMQKNS
Ga0257159_10121471	3300026494	Soil	MSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHGAAHRGD
Ga0257157_10194142	3300026496	Soil	MCEMSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHDAAHRGDQCQDMQKNS
Ga0257156_10415592	3300026498	Soil	YREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGQHGTAHRGDQDQDMQNDS
Ga0257161_11269612	3300026508	Soil	SRKVCEMSNLETYREKALECVRAADEVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS
Ga0257158_10978032	3300026515	Soil	MCEMSNLETYQEKARECARAANEAHSSAERVELLGLASVYKALADYVDRRHEHGTAHSGDQDQG
Ga0209648_100907563	3300026551	Grasslands Soil	MSNLETYREKALECVRAAEEIHGLRERVELLGLASVYMALADYVDRGHEHGAAHRGDQYQDMQKNS
Ga0209648_100912905	3300026551	Grasslands Soil	MSNLETYREKARECARAADEVHNSGERVELLGLASVYMALADYVDREHRHDTVFRDDQDQDMQKAS
Ga0179587_102202261	3300026557	Vadose Zone Soil	MSNLETYREKALKCVRAAEEIHGSRERVELLGLASVYMALADYVDRGHEHGAAHRGDQCQDMQKNS
Ga0209179_10822102	3300027512	Vadose Zone Soil	MSNLETYREKALECVRAADAVHDSGERVELLGLASVYMALADYVDRGHEHGTAHRCNQDQDMQKDS
Ga0209581_11010501	3300027706	Surface Soil	MSNVETYREKALKCAHAADRASSTGERAELFGLASIYMALADYVDRTHEHGAAHRGGQDQEMQRSS
Ga0209465_100328742	3300027874	Tropical Forest Soil	MSNLETYREKALECARAANGVQDSGERIGLLGLASVYMALADYVDHQHEHAARHWSDQDQDMHKDVSAH
Ga0137415_103013441	3300028536	Vadose Zone Soil	MSNLESYREKARECVRAADEVHNSGERVELLGLASVYMALADYVDRGHEHGTPNRNDQDEEMRKHS
Ga0137415_106211891	3300028536	Vadose Zone Soil	KALECARAAEEIQGSRERVELLGLASVYMALADYVDRGHEDGTAHRGDQDMQKNN
Ga0307476_100456553	3300031715	Hardwood Forest Soil	MLNLETYQEKALEWMRAAGEVHDSGECVELLGLASVYAALANYVDRQDAHGRRPGPDARG
Ga0307476_108728061	3300031715	Hardwood Forest Soil	MSNLETYREKAVKCVRAAEEVHDSRERVALLGLASVYTALADYVDRRHKHDGDQDQDAER
Ga0307474_103057263	3300031718	Hardwood Forest Soil	MCEMPNVETYHEKALECMRAAGEAHDSGECAELLGLASVYGALADYVDRQHEHGGDQDHRRKDS
Ga0307477_110575241	3300031753	Hardwood Forest Soil	MCEMLNLETYQEKALEWMRAAGEVHDSGECVELLGLASVYAALANYVDRQDAHGRRPGPDARG
Ga0306924_107927921	3300032076	Soil	MSNLETYRDKALKCARAADEAHDSGERVELLGLASVYMALADYVDRQHEGGTAQVRRQP
Ga0307470_106239402	3300032174	Hardwood Forest Soil	MSNLETYREKALQCANAANSVHDSGERVELLGLASVYMALADYVDHPHEHGTLPRGEQH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F082199

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences