Metagenome / Metatranscriptome Family F082411

Basic Information
Family ID	F082411
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	43 residues
Representative Sequence	MTAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLPEAASVLQ
Number of Associated Samples	95
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.23 %
% of genes near scaffold ends (potentially truncated)	99.12 %
% of genes from short scaffolds (< 2000 bps)	95.58 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (56.637 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.168 % of family members)
Environment Ontology (ENVO)	Unclassified (43.363 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.788 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.29% β-sheet: 11.43% Coil/Unstructured: 84.29%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00313	CSD	44.25
PF01165	Ribosomal_S21	40.71
PF03600	CitMHS	0.88
PF00171	Aldedh	0.88
PF10237	N6-adenineMlase	0.88
PF03928	HbpS-like	0.88
PF01048	PNP_UDP_1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	40.71
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.88
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.88
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.88
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.88
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.88
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.64 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.64 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.64 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	54.87 %
Unclassified	root	N/A	43.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.36 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	14.16 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.36 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	6.19 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.36 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.77 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10105933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1363	Open in IMG/M
3300004635\|Ga0062388_101248424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	738	Open in IMG/M
3300005184\|Ga0066671_10893438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	563	Open in IMG/M
3300005186\|Ga0066676_10402688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	923	Open in IMG/M
3300005337\|Ga0070682_101842655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300005341\|Ga0070691_10523151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	689	Open in IMG/M
3300005561\|Ga0066699_10137187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1657	Open in IMG/M
3300005602\|Ga0070762_10660134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	699	Open in IMG/M
3300005764\|Ga0066903_107790020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	551	Open in IMG/M
3300006028\|Ga0070717_10130641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2159	Open in IMG/M
3300006028\|Ga0070717_10186462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1811	Open in IMG/M
3300006031\|Ga0066651_10319998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300006046\|Ga0066652_100285393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1460	Open in IMG/M
3300006797\|Ga0066659_10832920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300010048\|Ga0126373_10470653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1294	Open in IMG/M
3300010048\|Ga0126373_12506400	Not Available	575	Open in IMG/M
3300010061\|Ga0127462_199245	Not Available	689	Open in IMG/M
3300010100\|Ga0127440_1073826	Not Available	948	Open in IMG/M
3300010358\|Ga0126370_11767532	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300010359\|Ga0126376_11094095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	805	Open in IMG/M
3300010359\|Ga0126376_11959532	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300010359\|Ga0126376_13064038	Not Available	517	Open in IMG/M
3300010360\|Ga0126372_11584195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	693	Open in IMG/M
3300010362\|Ga0126377_12331756	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300010376\|Ga0126381_102507454	Not Available	739	Open in IMG/M
3300010398\|Ga0126383_12622019	All Organisms → cellular organisms → Bacteria → Proteobacteria	587	Open in IMG/M
3300011120\|Ga0150983_11144540	Not Available	663	Open in IMG/M
3300011120\|Ga0150983_11433318	Not Available	961	Open in IMG/M
3300011332\|Ga0126317_10214539	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300012376\|Ga0134032_1172697	Not Available	1017	Open in IMG/M
3300012379\|Ga0134058_1025229	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300012924\|Ga0137413_10219602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1288	Open in IMG/M
3300012987\|Ga0164307_10783369	All Organisms → cellular organisms → Bacteria → Proteobacteria	756	Open in IMG/M
3300013296\|Ga0157374_11598983	Not Available	676	Open in IMG/M
3300015264\|Ga0137403_10152344	All Organisms → cellular organisms → Bacteria → Proteobacteria	2277	Open in IMG/M
3300015374\|Ga0132255_104685456	Not Available	579	Open in IMG/M
3300015374\|Ga0132255_105751511	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300016294\|Ga0182041_10768704	Not Available	859	Open in IMG/M
3300016319\|Ga0182033_10817872	Not Available	822	Open in IMG/M
3300016341\|Ga0182035_10330484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1260	Open in IMG/M
3300016341\|Ga0182035_10672232	All Organisms → cellular organisms → Bacteria → Proteobacteria	900	Open in IMG/M
3300016387\|Ga0182040_11713154	Not Available	537	Open in IMG/M
3300016404\|Ga0182037_10654111	Not Available	896	Open in IMG/M
3300016422\|Ga0182039_10547672	Not Available	1005	Open in IMG/M
3300016422\|Ga0182039_11768407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300020581\|Ga0210399_10654409	Not Available	866	Open in IMG/M
3300021476\|Ga0187846_10110313	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179	Open in IMG/M
3300021560\|Ga0126371_10466462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1409	Open in IMG/M
3300022525\|Ga0242656_1048326	Not Available	732	Open in IMG/M
3300022531\|Ga0242660_1251173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300022533\|Ga0242662_10150640	Not Available	703	Open in IMG/M
3300022724\|Ga0242665_10098126	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300022724\|Ga0242665_10153157	Not Available	730	Open in IMG/M
3300025926\|Ga0207659_11744572	All Organisms → cellular organisms → Bacteria → Proteobacteria	530	Open in IMG/M
3300026041\|Ga0207639_11785297	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300026088\|Ga0207641_12252749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300026304\|Ga0209240_1104268	Not Available	1008	Open in IMG/M
3300026308\|Ga0209265_1163113	All Organisms → cellular organisms → Bacteria → Proteobacteria	580	Open in IMG/M
3300026325\|Ga0209152_10075576	Not Available	1229	Open in IMG/M
3300027698\|Ga0209446_1109968	Not Available	709	Open in IMG/M
3300030730\|Ga0307482_1179080	Not Available	633	Open in IMG/M
3300030829\|Ga0308203_1011938	All Organisms → cellular organisms → Bacteria → Proteobacteria	1021	Open in IMG/M
3300030839\|Ga0073999_11171330	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300030902\|Ga0308202_1078748	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300030903\|Ga0308206_1027761	Not Available	1007	Open in IMG/M
3300031022\|Ga0138301_1861343	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300031091\|Ga0308201_10054803	Not Available	1014	Open in IMG/M
3300031446\|Ga0170820_15733335	Not Available	744	Open in IMG/M
3300031543\|Ga0318516_10263052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	997	Open in IMG/M
3300031545\|Ga0318541_10864698	Not Available	504	Open in IMG/M
3300031564\|Ga0318573_10350610	Not Available	792	Open in IMG/M
3300031564\|Ga0318573_10590130	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300031564\|Ga0318573_10746530	Not Available	526	Open in IMG/M
3300031572\|Ga0318515_10083446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1659	Open in IMG/M
3300031590\|Ga0307483_1022309	Not Available	626	Open in IMG/M
3300031640\|Ga0318555_10510079	Not Available	652	Open in IMG/M
3300031720\|Ga0307469_11473132	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300031724\|Ga0318500_10360774	Not Available	719	Open in IMG/M
3300031744\|Ga0306918_10737624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	770	Open in IMG/M
3300031747\|Ga0318502_10554611	Not Available	690	Open in IMG/M
3300031748\|Ga0318492_10269268	Not Available	883	Open in IMG/M
3300031751\|Ga0318494_10451859	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300031753\|Ga0307477_10902754	Not Available	583	Open in IMG/M
3300031763\|Ga0318537_10286838	Not Available	609	Open in IMG/M
3300031770\|Ga0318521_10139715	Not Available	1368	Open in IMG/M
3300031771\|Ga0318546_10526117	All Organisms → cellular organisms → Bacteria → Proteobacteria	830	Open in IMG/M
3300031779\|Ga0318566_10114052	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300031860\|Ga0318495_10212546	Not Available	870	Open in IMG/M
3300031890\|Ga0306925_10958594	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300031897\|Ga0318520_10194457	Not Available	1194	Open in IMG/M
3300031910\|Ga0306923_11513404	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300031912\|Ga0306921_10040489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5257	Open in IMG/M
3300031945\|Ga0310913_11270722	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300031954\|Ga0306926_12192149	Not Available	615	Open in IMG/M
3300031954\|Ga0306926_12392960	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300031954\|Ga0306926_12412381	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300031981\|Ga0318531_10493608	Not Available	554	Open in IMG/M
3300031981\|Ga0318531_10595967	Not Available	501	Open in IMG/M
3300032035\|Ga0310911_10363495	Not Available	836	Open in IMG/M
3300032035\|Ga0310911_10568881	Not Available	657	Open in IMG/M
3300032041\|Ga0318549_10521721	Not Available	534	Open in IMG/M
3300032042\|Ga0318545_10249642	Not Available	637	Open in IMG/M
3300032043\|Ga0318556_10148954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1207	Open in IMG/M
3300032054\|Ga0318570_10040179	All Organisms → cellular organisms → Bacteria → Proteobacteria	1902	Open in IMG/M
3300032059\|Ga0318533_10094104	All Organisms → cellular organisms → Bacteria	2064	Open in IMG/M
3300032065\|Ga0318513_10416178	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300032066\|Ga0318514_10336608	Not Available	799	Open in IMG/M
3300032094\|Ga0318540_10198536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	966	Open in IMG/M
3300032094\|Ga0318540_10578671	Not Available	541	Open in IMG/M
3300033290\|Ga0318519_10009137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3968	Open in IMG/M
3300033290\|Ga0318519_10503477	Not Available	730	Open in IMG/M
3300033290\|Ga0318519_10650608	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300034448\|Ga0370540_03625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	793	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.69%
Host-Associated	Host-Associated	5.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.04%
Plants	Host-Associated → Plants	5.31%
Aquatic	Environmental → Aquatic	2.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.54%
Freshwater	Environmental → Aquatic → Freshwater	2.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%
Cave	Environmental → Terrestrial → Cave	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.19%
Loam	Environmental → Terrestrial → Soil → Loam	7.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.65%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.77%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010061	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030839	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFB (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034448	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_101059331	3300004633	Tropical Forest Soil	MSAHKFSVGQTVHFSPDRGQEVAIRGRFTVVTLLPEAFGA
Ga0062388_1012484243	3300004635	Bog Forest Soil	MIAHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASVLQYRVKSQL
Ga0066671_108934381	3300005184	Soil	MSLHRFTVGQSVRFSPDRLQDSASRGRFKVVRLLPESANVLQ
Ga0066676_104026881	3300005186	Soil	MTAHKFSVGQTVRFSPDRNQESTRRGSFKVLRLLPEEASV
Ga0070682_1018426551	3300005337	Corn Rhizosphere	MQPPKFAVGQTVRFSPDRRQLSSARGEFKIVRLLPEEASVFQY
Ga0070691_105231513	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MMSPHKYAIGQTVRFSPDRNQGATVRGSFKITRLLPEAASVLQYRVK
Ga0066699_101371871	3300005561	Soil	MAARKFAVGQTVRFSPDRVQLRSARGQFEVLRLLPEDASIFQYR
Ga0070762_106601341	3300005602	Soil	MAARKFAVGQTVRFSPDRVQLRSARGQFKVLRLLPEDASIFQYRVKSE
Ga0066903_1077900201	3300005764	Tropical Forest Soil	MSAQHKFAVGQTVRYSPGLGQGSAGPGSFKIIRLLPETASV
Ga0070717_101306411	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNAPKYAVGQTVRFSPDRHQLSSARGQFKVVRLLP
Ga0070717_101864625	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLHKFAVGQTVRFSPDRNQDGTRGRGSFKIVRLLPESESIFQYRVKS
Ga0066651_103199981	3300006031	Soil	MTRKFAVGQTVRFSPDRHQLSSARGQFKIVRLLPEDASV
Ga0066652_1002853935	3300006046	Soil	MTRKFAVGQTVRFSPDRHQLSSARGQFKIVRLLPEDASVFQYRVKS
Ga0066659_108329204	3300006797	Soil	MQPPKFAVGQTVRFSPDRRQLSSARGEFKIVRLLP
Ga0126373_104706531	3300010048	Tropical Forest Soil	MSAHKFAVGQTVRFSPDRNQEGTARGSFKIVRLLPEEASVFQYRVKSQ
Ga0126373_125064003	3300010048	Tropical Forest Soil	MAVHKFAVGQTVRFSPDRNQQGTVRGSFKIVRLLPEEASVL
Ga0127462_1992453	3300010061	Grasslands Soil	MTRKFAVGQTVRFSPDRHQLSSARGQFKIVRLLPEDASVFQYRVKSQSD
Ga0127440_10738261	3300010100	Grasslands Soil	MQPPKFAVGQTVRFAPDRRQLSSARGEFKIVRLLP
Ga0126370_117675321	3300010358	Tropical Forest Soil	MSVHKFAVGQTVRFSPDRNQQGTARGSFKIVRLLPEDAS
Ga0126376_110940951	3300010359	Tropical Forest Soil	MMLRATMTTHKFAVGEAVSFSPDKGQEHTGGELFEIVR
Ga0126376_119595323	3300010359	Tropical Forest Soil	MAVHKFAVGQTVRFSPDRNQEVTVRGSFKIVRLLPEEASVFQY
Ga0126376_130640382	3300010359	Tropical Forest Soil	MSAHKFSVGQTVRFSPDRNQEGATRGSFTVVRLLPEESSVFQYRVKS
Ga0126372_115841951	3300010360	Tropical Forest Soil	MSAHKFSVGQTVHFSPDRGQEVAARGRFTIVSLLPEAANGFQYRVKSQTD
Ga0126377_123317562	3300010362	Tropical Forest Soil	MSPHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLPEAASV
Ga0126381_1025074541	3300010376	Tropical Forest Soil	VSAHKFGIGQTVRFSPDRNQRVEVRGSFTVVRLLPEAASILQYRVKSQL
Ga0126383_126220191	3300010398	Tropical Forest Soil	MSAQHKFAVGQTVRYSPGLGQGSPGPGSFKIVRLLPEAASILQYR
Ga0150983_111445401	3300011120	Forest Soil	MMIAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLP
Ga0150983_114333181	3300011120	Forest Soil	MAARKFAVGQTVRFSPDRVQLRSARGQFKVLRLLPEDASIFQYR
Ga0126317_102145391	3300011332	Soil	MTAHKFTVGQTVRFSPDRNQEATGRGSFKIVRLLPEE
Ga0134032_11726974	3300012376	Grasslands Soil	MSEHKFAVGQTVRFLPGRYQGGTAPGSFKIVRLMPESASVFQY
Ga0134058_10252293	3300012379	Grasslands Soil	MTAHKFSVGQTVRFSPDRNQESTRRGSFKVLRLLP
Ga0137413_102196021	3300012924	Vadose Zone Soil	MNARKYAVGQTVRFSPDRHQLSSARGQFKVVRLLPE
Ga0164307_107833694	3300012987	Soil	MQPPKFAVGQTVRFSPDRRQLSSARGEFKIVRLLPEEASVFQYRVKSKVD
Ga0157374_115989833	3300013296	Miscanthus Rhizosphere	MEAHKFTVGQTVRFSPHRNELSSAQGNFKIVRQLPEAA
Ga0137403_101523443	3300015264	Vadose Zone Soil	MSGYKFAIGQSVRFSPDRIQLSSGRGRFKIVRLLPE
Ga0132255_1046854561	3300015374	Arabidopsis Rhizosphere	MEAHKFTVGQTVRFSPHRNELSSAQGNFKIVRQLPEAANVYQYRVKSQ
Ga0132255_1057515113	3300015374	Arabidopsis Rhizosphere	MQAPKFAVGQTVRFSPDRHQLSSAGGQFKVVRLLPEDAS
Ga0182041_107687041	3300016294	Soil	MSEHKFGVGQTVRLSPDRNQQVAARGSFKIVRLLPEEASVLQY
Ga0182033_108178723	3300016319	Soil	MTAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLPEAASVLQ
Ga0182035_103304843	3300016341	Soil	MTAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLPEAASVLQYRV
Ga0182035_106722321	3300016341	Soil	MTVHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAAS
Ga0182040_117131542	3300016387	Soil	MSAQHKFAVGQTVRFSPGLGQGSPGSGSFKIVRLLPEAASVLQYRVKSQLDG
Ga0182037_106541114	3300016404	Soil	MSEHKFGVGQTVRFSPDRNQQGAARGSFKVVRLLPEEASVLQ
Ga0182039_105476721	3300016422	Soil	MATHKFAVGHTVRFSPDRGQEHEKGEFFKIVRLLPEAGGVL
Ga0182039_117684072	3300016422	Soil	MATHKFAVGQTVRFSPDPGQEHAKGGLFKIVRLLPEAGNM
Ga0210399_106544092	3300020581	Soil	MMIAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLL
Ga0187846_101103133	3300021476	Biofilm	MSPHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASVL
Ga0126371_104664625	3300021560	Tropical Forest Soil	MSAQHKFAVGQTVRYSPGLGQGAAGPGSFKIIRLLPETASVLQ
Ga0242656_10483261	3300022525	Soil	MSPHKFAVGQTVRFSPDRNQGVTVRGGFKVVRLLPEAASVLQYRVK
Ga0242660_12511731	3300022531	Soil	MDSHKFTVGQAVQFSPDRQQSAVRGSRFKIVRLLPEAGSVP
Ga0242662_101506401	3300022533	Soil	MMIAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLPEA
Ga0242665_100981261	3300022724	Soil	MSVHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASVL
Ga0242665_101531571	3300022724	Soil	MSPHKFAVGQTVRFSPDRNQGVTVRGGFKVVRLLPEAASVLQY
Ga0207659_117445723	3300025926	Miscanthus Rhizosphere	MMSPHKYAIGQTVRFSPDRNQGATVRGSFKITRLLPE
Ga0207639_117852973	3300026041	Corn Rhizosphere	MMSPHKYAIGQTVRFSPDRNQGATVRGSFKITRLLPEAASVLQ
Ga0207641_122527491	3300026088	Switchgrass Rhizosphere	MQPPKFAVGQTVRFSPDRRQLSSARGEFKIVRLLPEEASVFQYRVKSKV
Ga0209240_11042681	3300026304	Grasslands Soil	MLHKFAVGQTVRFSPDRNQDGTRGRGSFKIVRLLPESESIFQYRV
Ga0209265_11631131	3300026308	Soil	MQPPKFAVGQTVRFSPDRRQLSSARGEFKIVRLLPEEASVFQ
Ga0209152_100755764	3300026325	Soil	MQPPKFAVGQTVRFSPDRVQLRSARGQFEVLRLLPEDASIFQYRVKSQ
Ga0209446_11099681	3300027698	Bog Forest Soil	MSAHKFTIGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASILQYRVKS
Ga0307482_11790802	3300030730	Hardwood Forest Soil	MSAHKFAVGQTVRFSPDRNQGITVRGSFKIVRLLPETASILQYRVKS
Ga0308203_10119384	3300030829	Soil	MSAHKFAVGQTVRFSPDRNQGTTVRGSFKITRLLPEAASVLQYAKMRDNK
Ga0073999_111713303	3300030839	Soil	MNARKYAVGQTVRFSPDRHQLSSARGQFKVVRLLPEDAS
Ga0308202_10787483	3300030902	Soil	MSPHKFVIGQTVRFQPDRNQGTTARGQFKITRLLPETASVLQYRVKS
Ga0308206_10277611	3300030903	Soil	MSVHKFAVGQTVRFLPGRYQGGTAPGSFKIVRLMPESASVF
Ga0138301_18613431	3300031022	Soil	MNAPKYAVGQTVRFSPDRHQLSSARGQFKVVRLLPEDASVFQ
Ga0308201_100548031	3300031091	Soil	MMSAHKYAIGQTVRFSPDRNQGTTVRGSFKITRLLPEAASVLQ
Ga0170820_157333351	3300031446	Forest Soil	MYAHKFAVGQTVRFSPDRNQGVEVRGSFKIVRLLPETAS
Ga0318516_102630521	3300031543	Soil	MATHKFAVGQTVRFSPDRYQEPATKGGLFKIVRPLPEAGGAL
Ga0318541_108646981	3300031545	Soil	MSAQHKFAVGQTVRFLPDLGQGVPSSGSFKIVRLL
Ga0318573_103506103	3300031564	Soil	MSAQHKFAVGQTVRFLPDLGQGVPSSGSFKIVRLLPEAASALQYRVKSQ
Ga0318573_105901302	3300031564	Soil	MSPQHKFAIGQTVRFSPDLGQGNAVPGSFKITRLLPEAASVLQY
Ga0318573_107465303	3300031564	Soil	MSPQHKFAIGQTVRFSPGLGQGSPGSGSFKITRLLPEAASVLQY
Ga0318515_100834461	3300031572	Soil	MVTHKFAVGQTVRFSPDPGQEHAKGGLFKIVRLLPE
Ga0307483_10223091	3300031590	Hardwood Forest Soil	MSAHKFAVGQTVRFSPDRNQGITVRGSFKIVRLLPETASILQYR
Ga0318555_105100791	3300031640	Soil	MLAQHKFAVGQTVRFLPDLGQGSPSSGSFKIVRLLPEAASVLQYRVKSQL
Ga0307469_114731322	3300031720	Hardwood Forest Soil	MSVCKFAVGQAVRFSPDRYPGGASPGTLKVVRLQPEAASVLQYRVKS
Ga0318500_103607741	3300031724	Soil	MSAQHKFAVGQTVRFSADLGQGSPGSASFKIVRLLPEAASVLQY
Ga0306918_107376243	3300031744	Soil	MSAQHKFAVGQTVRFLPDLGQGVPSSGSFKIVRLLP
Ga0318502_105546111	3300031747	Soil	MSAQHKFAVGQTVRFSADLGQGSPGSASFKIVRLLPE
Ga0318492_102692681	3300031748	Soil	MSAHHKFAVGQTVRFLPDLGQGAPSSGSFKIVRLLPEAASALQYRVKSQVDGH
Ga0318494_104518591	3300031751	Soil	MSPHKFAVGQTVRFSPDRNQGVTVRGSFKIVRLLPEAASVLQYRVKS
Ga0307477_109027541	3300031753	Hardwood Forest Soil	MAPHKFAVGQKVHFSPDRQQLHSGQGWFNVVRMLPEAANVLQYRVKSEVD
Ga0318537_102868383	3300031763	Soil	MSAHHKFAVGQTVRFLPDLGQGAPSSGSFKIVRLLPEAAS
Ga0318521_101397151	3300031770	Soil	MSAHHKFAVGQTVRFLPDLGQGAPSSGSFKIVRLLPEAASALQYRVKSQV
Ga0318546_105261174	3300031771	Soil	VAVHKFAVGQTVRFSPDRNQEGTARGSFKIVRLLPEEASVLQYRVKSQL
Ga0318566_101140521	3300031779	Soil	MSVHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASVLQYR
Ga0318495_102125461	3300031860	Soil	MSAQHKFAVGQTVRFSADLGQGSPGSASFKIVRLLPEAASVLQYRVKSQLDGH
Ga0306925_109585941	3300031890	Soil	MLAQHKFAVGQTVRFLPDLGQGSPSSGSFKIVRLLPEAASVLQYRVT
Ga0318520_101944575	3300031897	Soil	VAVHKFAVGQTVRFSPDRNQEGTARGSFKIVRLLPEEASVLQYRVKSQLDG
Ga0306923_115134043	3300031910	Soil	MSVHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASVLQYRV
Ga0306921_100404891	3300031912	Soil	MTVRKFAVGQSVRFSPDRNQGVTVRGGFKVVRLLPGAASILQYRVKSQLDGHE
Ga0310913_112707221	3300031945	Soil	MLAQHKFAVGQTVRFLPDLGQGSPSSGSFKIVRLLPEAASVLQY
Ga0306926_121921493	3300031954	Soil	MSPQHKFAIGQTVRFSPGLGQGSPGSGSFKITRLLPEAASVLQYRVKS
Ga0306926_123929601	3300031954	Soil	MLAQHKFAVGQTVRFLPDLGQGSPSSGSFKIVRLLPEAAS
Ga0306926_124123812	3300031954	Soil	MSVHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAA
Ga0318531_104936081	3300031981	Soil	MSAQHKFAIGQTVRFSPGLGQGSPGSGSFKIVRLLPESASVLQY
Ga0318531_105959671	3300031981	Soil	MSAQHKFAVGQTVRFLPDLGQGTPSSGSFKIVRLLPEAASALQYRVK
Ga0310911_103634954	3300032035	Soil	MSAHHKFAVGQTVRFLPDLGQGAPSSGSFKIVRLLPEAASALQYR
Ga0310911_105688811	3300032035	Soil	MTVRKFAVGQSVRFSPDRNQGVTVRGGFKVVRLLPGAASILQYRVKSQL
Ga0318549_105217212	3300032041	Soil	MSDHKFGVGQTVRFSPDRNQQVAARGSFKIVRLLPEEASVLQY
Ga0318545_102496421	3300032042	Soil	MSAQHKFAVGQTVRFLPDLGQGTPSSGSFKIVRLLPEAASALQY
Ga0318556_101489541	3300032043	Soil	MSPQHKFAIGQTVRFSPGLGQGSPGSGSFKITRLLPEAAS
Ga0318570_100401795	3300032054	Soil	MTVHKFAVGQTVRFSPDRSQGVTVRGSFKVVRLLPEAASVLQYRVKSQLD
Ga0318533_100941041	3300032059	Soil	MSAQHKFAVGQTVRFSADLGQGSPGSASFKIVRLLPEAASVLQYRV
Ga0318513_104161781	3300032065	Soil	MTVHKFAVGQTVRFSPDRSQGVTVRGSFKVVRLLPEAASVLQYRVKSQLDGH
Ga0318514_103366083	3300032066	Soil	MTVHKFAVGQSVRFSPDRNQGVTVRGGFKVVRLLPGAASILQYR
Ga0318540_101985363	3300032094	Soil	MSPQHKFAIGQTVRFSPDLGQGNAVPGSFKITRLLPEAASVLQYRVKSQL
Ga0318540_105786711	3300032094	Soil	MSAQHKFAVGQTVRFLPDLGQGTPSSGSFKIVRLLPEAASALQYRVKSQ
Ga0318519_100091379	3300033290	Soil	VAVHKFAVGQTVRFSPDRNQEGTARGSFKIVRLLP
Ga0318519_105034771	3300033290	Soil	MSEHKFGVGQTVRFSPDRNQQVAARGSFKIVRLLPEEASVLQYRVKSQ
Ga0318519_106506082	3300033290	Soil	MRRPGEQNMSPHKFAVGQTVRFSPDRNQGVTVRGSFKVVRLLPEAASVLQY
Ga0370540_03625_668_793	3300034448	Soil	MPAHKFAVGQTVRFSPDRNQEHTARGSFKIVRLLPEEASVFQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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