NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F082453

Metagenome / Metatranscriptome Family F082453

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F082453
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 58 residues
Representative Sequence IGTPAEVRDGLQQYLDATGYQRVLLLMALPGLETPLALRSMRLFAEEVAPKLT
Number of Associated Samples 104
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.68 %
% of genes near scaffold ends (potentially truncated) 94.69 %
% of genes from short scaffolds (< 2000 bps) 93.81 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (85.841 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(12.389 % of family members)
Environment Ontology (ENVO) Unclassified
(24.779 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(38.938 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.74%    β-sheet: 0.00%    Coil/Unstructured: 59.26%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF00296Bac_luciferase 7.96
PF01436NHL 4.42
PF02668TauD 4.42
PF07690MFS_1 4.42
PF01266DAO 4.42
PF00496SBP_bac_5 2.65
PF07969Amidohydro_3 2.65
PF01464SLT 2.65
PF00106adh_short 1.77
PF13624SurA_N_3 1.77
PF01425Amidase 1.77
PF05954Phage_GPD 0.88
PF08448PAS_4 0.88
PF04909Amidohydro_2 0.88
PF02518HATPase_c 0.88
PF07883Cupin_2 0.88
PF00881Nitroreductase 0.88
PF13231PMT_2 0.88
PF03928HbpS-like 0.88
PF13185GAF_2 0.88
PF00561Abhydrolase_1 0.88
PF02627CMD 0.88
PF02245Pur_DNA_glyco 0.88
PF13561adh_short_C2 0.88
PF01738DLH 0.88
PF00676E1_dh 0.88
PF01717Meth_synt_2 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 7.96
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 4.42
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 1.77
COG05672-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymesEnergy production and conversion [C] 0.88
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.88
COG0620Methionine synthase II (cobalamin-independent)Amino acid transport and metabolism [E] 0.88
COG1071TPP-dependent pyruvate or acetoin dehydrogenase subunit alphaEnergy production and conversion [C] 0.88
COG20943-methyladenine DNA glycosylase MpgReplication, recombination and repair [L] 0.88
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.88
COG3500Phage protein DMobilome: prophages, transposons [X] 0.88

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms85.84 %
UnclassifiedrootN/A14.16 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10223098All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300004024|Ga0055436_10157416All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300004157|Ga0062590_101073780All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300004463|Ga0063356_102910540All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium737Open in IMG/M
3300004480|Ga0062592_100946144All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium781Open in IMG/M
3300005172|Ga0066683_10785248All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300005186|Ga0066676_10825927All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300005206|Ga0068995_10125481All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300005289|Ga0065704_10369822All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300005332|Ga0066388_103545327All Organisms → cellular organisms → Bacteria → Proteobacteria797Open in IMG/M
3300005336|Ga0070680_101330453All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300005353|Ga0070669_101505418All Organisms → cellular organisms → Bacteria → Proteobacteria585Open in IMG/M
3300005438|Ga0070701_11302897All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300005447|Ga0066689_10744573All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300005467|Ga0070706_100688278All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300005468|Ga0070707_100773828All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300005518|Ga0070699_100717504All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia914Open in IMG/M
3300005540|Ga0066697_10084159All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1838Open in IMG/M
3300005545|Ga0070695_101576768All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300005554|Ga0066661_10240399All Organisms → cellular organisms → Bacteria1121Open in IMG/M
3300005574|Ga0066694_10414185All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300005586|Ga0066691_10565086All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium677Open in IMG/M
3300005598|Ga0066706_10761943All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales766Open in IMG/M
3300005713|Ga0066905_100509978All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300005842|Ga0068858_102199641All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300005876|Ga0075300_1005089All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1319Open in IMG/M
3300006794|Ga0066658_10657059All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300006845|Ga0075421_102385824All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300006871|Ga0075434_100923213All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300006880|Ga0075429_101890133Not Available517Open in IMG/M
3300006904|Ga0075424_101253290All Organisms → cellular organisms → Bacteria789Open in IMG/M
3300007004|Ga0079218_11130406All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales803Open in IMG/M
3300007076|Ga0075435_100449546All Organisms → cellular organisms → Bacteria1111Open in IMG/M
3300007076|Ga0075435_101348605All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300009012|Ga0066710_101030325All Organisms → cellular organisms → Bacteria → Proteobacteria1271Open in IMG/M
3300009012|Ga0066710_104684439All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300009094|Ga0111539_10867203All Organisms → cellular organisms → Bacteria1050Open in IMG/M
3300009100|Ga0075418_11406305All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300009148|Ga0105243_10347357Not Available1361Open in IMG/M
3300009792|Ga0126374_11491088All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria554Open in IMG/M
3300009806|Ga0105081_1024332All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300010047|Ga0126382_11176141Not Available685Open in IMG/M
3300010048|Ga0126373_11592458All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria718Open in IMG/M
3300010335|Ga0134063_10481328All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria619Open in IMG/M
3300011119|Ga0105246_10344209All Organisms → cellular organisms → Bacteria1220Open in IMG/M
3300012164|Ga0137352_1114694Not Available532Open in IMG/M
3300012201|Ga0137365_11060872Not Available585Open in IMG/M
3300012208|Ga0137376_10970928All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria728Open in IMG/M
3300012360|Ga0137375_10061938All Organisms → cellular organisms → Bacteria4005Open in IMG/M
3300012685|Ga0137397_10744802All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300012918|Ga0137396_10002092All Organisms → cellular organisms → Bacteria10819Open in IMG/M
3300012918|Ga0137396_11256806All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300012922|Ga0137394_10399564Not Available1172Open in IMG/M
3300012922|Ga0137394_11237916All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300012929|Ga0137404_10014670All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales5525Open in IMG/M
3300012944|Ga0137410_10055565All Organisms → cellular organisms → Bacteria2834Open in IMG/M
3300012944|Ga0137410_10765591All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria808Open in IMG/M
3300012948|Ga0126375_10269235Not Available1165Open in IMG/M
3300012972|Ga0134077_10460816All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium558Open in IMG/M
3300012986|Ga0164304_11784039All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300014302|Ga0075310_1161806All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300014870|Ga0180080_1033647Not Available795Open in IMG/M
3300015054|Ga0137420_1328130All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1352Open in IMG/M
3300015245|Ga0137409_10090192All Organisms → cellular organisms → Bacteria2853Open in IMG/M
3300015259|Ga0180085_1155330Not Available687Open in IMG/M
3300015372|Ga0132256_102713516All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300018028|Ga0184608_10129361Not Available1076Open in IMG/M
3300018028|Ga0184608_10292433Not Available716Open in IMG/M
3300018031|Ga0184634_10059874All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1596Open in IMG/M
3300018081|Ga0184625_10191724Not Available1071Open in IMG/M
3300018081|Ga0184625_10539578All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300018433|Ga0066667_10231147All Organisms → cellular organisms → Bacteria1386Open in IMG/M
3300020221|Ga0194127_10423944All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300021073|Ga0210378_10267483All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium645Open in IMG/M
3300021078|Ga0210381_10332090All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium553Open in IMG/M
3300021090|Ga0210377_10301064All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium982Open in IMG/M
3300021560|Ga0126371_12697141All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium602Open in IMG/M
3300022534|Ga0224452_1112042All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium837Open in IMG/M
3300025560|Ga0210108_1019760All Organisms → cellular organisms → Bacteria1217Open in IMG/M
3300025899|Ga0207642_10878758All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300025910|Ga0207684_10404937All Organisms → cellular organisms → Bacteria1173Open in IMG/M
3300025922|Ga0207646_10201630All Organisms → cellular organisms → Bacteria1797Open in IMG/M
3300025923|Ga0207681_11695443All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Crenalkalicoccus → Crenalkalicoccus roseus528Open in IMG/M
3300025938|Ga0207704_10089319All Organisms → cellular organisms → Bacteria2019Open in IMG/M
3300026088|Ga0207641_12182682All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300026095|Ga0207676_12599135All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium503Open in IMG/M
3300026118|Ga0207675_101681202All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria655Open in IMG/M
3300026316|Ga0209155_1209754All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium610Open in IMG/M
3300026328|Ga0209802_1246341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_2_65_11619Open in IMG/M
3300026331|Ga0209267_1060377All Organisms → cellular organisms → Bacteria1683Open in IMG/M
3300026333|Ga0209158_1216200All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300026361|Ga0257176_1069180All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300026515|Ga0257158_1108357All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300026535|Ga0256867_10061870All Organisms → cellular organisms → Bacteria1492Open in IMG/M
3300027187|Ga0209869_1026468Not Available663Open in IMG/M
3300027748|Ga0209689_1076256All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1788Open in IMG/M
3300027748|Ga0209689_1132683All Organisms → cellular organisms → Bacteria1234Open in IMG/M
3300027909|Ga0209382_11828933All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium590Open in IMG/M
3300028047|Ga0209526_10150444All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1630Open in IMG/M
3300028715|Ga0307313_10285259Not Available514Open in IMG/M
3300028819|Ga0307296_10327152Not Available836Open in IMG/M
3300030006|Ga0299907_10626132All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300030006|Ga0299907_11064704All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300031198|Ga0307500_10108533All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300031682|Ga0318560_10450188All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300031740|Ga0307468_101155104All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria694Open in IMG/M
3300031890|Ga0306925_11665469All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300032000|Ga0310903_10376460All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium717Open in IMG/M
3300032180|Ga0307471_101297738All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300033551|Ga0247830_10116353All Organisms → cellular organisms → Bacteria1906Open in IMG/M
3300034178|Ga0364934_0101210All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1083Open in IMG/M
3300034669|Ga0314794_068662All Organisms → cellular organisms → Bacteria706Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil12.39%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.50%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.19%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.19%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.54%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.54%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.65%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.65%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.77%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.77%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.77%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.77%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.77%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.77%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.77%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.77%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.89%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.89%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.89%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.89%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.89%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.89%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.89%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.89%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.89%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005206Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005876Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_401EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009806Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012164Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2EnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014302Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2EnvironmentalOpen in IMG/M
3300014870Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10DEnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015259Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10DEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300020221Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100mEnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300021090Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redoEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022534Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1EnvironmentalOpen in IMG/M
3300025560Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026515Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-AEnvironmentalOpen in IMG/M
3300026535Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)EnvironmentalOpen in IMG/M
3300027187Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300031198Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_SEnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034178Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17EnvironmentalOpen in IMG/M
3300034669Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1022309813300002561Grasslands SoilVRDNLSRYVDATGYERVLLLMALPGLASNLALRSMRLFAEEVAPAMATPSPAR*
Ga0055436_1015741613300004024Natural And Restored WetlandsEVRDGLRKYCDATGYERVLLVMALPGMEAGLALRSMRLFSEQIAPAMLPA*
Ga0062590_10107378013300004157SoilADGWALIGTAADVREGLQQYLEATGYQRVLLLMALPGLPTPLALRSMRLFTSDVAPALRLQAQPR*
Ga0063356_10291054023300004463Arabidopsis Thaliana RhizosphereLGTPDEVREGLQQYLEATGYQRVLLLMALPGLPTALALRSMRLFAEKVAPAVASV*
Ga0062592_10094614413300004480SoilVREGPQQYLEATGYQRVLLLMALPGLSTALALRSMRLFAEKVAPAVAAV*
Ga0066683_1078524823300005172SoilVRESLQQYLEATGYQRVMLLMALPGLDTALALRSMRLFVDEVVPAMTPVAPAQL*
Ga0066676_1082592713300005186SoilYLADGWALIGTPSEVRDNLSRYVDATGYERVLLLMALPGLASNLALRSMRLFAEEVAPAMATPSPAR*
Ga0068995_1012548113300005206Natural And Restored WetlandsEVRDGLQRYLDVTGYRRVLLLMALPGIATAAALRSMRLFAHDVAPSLTAPAVTSDLR*
Ga0065704_1036982223300005289Switchgrass RhizosphereLIGTPDEVRDGLNRYLDATGYERVLLLMAMPGLATDLALRSMRLFAEEVAPKLERRR*
Ga0066388_10354532723300005332Tropical Forest SoilMALVGTPREVRKGLEEYLDATGYQRVMLLMDLLWLETEAVLRSTRLFSEESW*
Ga0070680_10133045323300005336Corn RhizosphereREYLGDGWALIGTPAEVREGLQNYLDATGYQHVLLLMALPGLDTSLALRSMRLFAEQVAPAMVPVNGRVATGP*
Ga0070669_10150541823300005353Switchgrass RhizospherePDEVRESLQRYLDAAAFGRVMLLMALPGLETDLALRSMRLFAEEVAPALEGQLRA*
Ga0070701_1130289713300005438Corn, Switchgrass And Miscanthus RhizosphereFRDYLDDGLAMIGSPDEVRDRLQEYLEATGYHHVLLLMALPGLGTAEALRSMRLLAEEVRPGMTPHAQRA*
Ga0066689_1074457323300005447SoilDGWALIGTPSEVRDNLSRYVDATGYERVLLLMALPGLASNLALRSMRLFAEEVAPAMATPSPAR*
Ga0070706_10068827813300005467Corn, Switchgrass And Miscanthus RhizosphereLIGTPAEVRDSLRQYRDVTGYERVLLVMALPGLDTSLALRSMRLFAEEVAPAMVPVAGRRNP*
Ga0070707_10077382823300005468Corn, Switchgrass And Miscanthus RhizosphereDGWALIGTPAEVRDSLRQYRDVTGYERVLLVMALPGLDTSLALRSMRLFAEEVAPAMVPVAGRRGNP*
Ga0070699_10071750423300005518Corn, Switchgrass And Miscanthus RhizosphereQKFREATGYERVLLVMALPGLDTGRALRSMRLFAEHIAPVMVPV*
Ga0066697_1008415923300005540SoilPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFAEKVAPALVSV*
Ga0070695_10157676813300005545Corn, Switchgrass And Miscanthus RhizosphereALFGAPGEVRDGLQQYLDATGYQRVLLLMALPGIETALALRSMRLFAEEVAPALTPVAAG
Ga0066661_1024039923300005554SoilPAEVRDGLSRYLDATGYERVLLLMALPGLSTELALGSMRLFAEEVAPKLERGR*
Ga0066694_1041418523300005574SoilDGWALIGTPAEVRDGLQQYLDATGYQRVLLLMALPGLETPLALRSMRLFAEEVAPKLT*
Ga0066691_1056508623300005586SoilPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFAEKVAPALVPA*
Ga0066706_1076194323300005598SoilPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFAEKVAPALA*
Ga0066905_10050997813300005713Tropical Forest SoilGTPSEVRKRLQEYLDATGYQRVMLLMAIPGLATNLALRSMRLFAEESW*
Ga0068858_10219964113300005842Switchgrass RhizosphereEVREGLQSYLHATGYQRVLLLMALPGLDTRHALRSMRLFASDVAPALTGDLQRA*
Ga0075300_100508913300005876Rice Paddy SoilVRDGLQRYCEATGYERVLLVMALPGLDTALALRSMRLFAEEVAPALAPAGGPATTGS*
Ga0066658_1065705913300006794SoilIGTPAEVRDGLQQYLDATGYQRVLLLMALPGIETPLALRSMRLFADEVAPKLSAPVAHQRSS*
Ga0075421_10238582413300006845Populus RhizosphereATGWTLLGTADEVREGLRQYLEATGYQRVLLLMALPGLPTGLALRSMRLFAEQVAPAVTAV*
Ga0075431_10132313113300006847Populus RhizosphereDEVREGLRQYLDATGYERVLLIMALPGLSTAHALRSMRLFAEEIAPTLTAPRRDNVMDFLQRRV*
Ga0075434_10092321323300006871Populus RhizosphereDGWALIGTPSQVRDGLQQYLDATGYQRVLLLMALPGIDTKLALRSMRLFTEQVAPALVAPTAQARLV*
Ga0075429_10189013313300006880Populus RhizosphereVRDGLQQYREATGYRRVLLLMALPGLATPLALRSMRLFAEKVAPAMASV*
Ga0075424_10125329023300006904Populus RhizosphereDDLQKFREATGYERVLLVMALPGLDTGRALRSMRLFAEHIAPVMIPV*
Ga0079218_1113040613300007004Agricultural SoilDGWALIGTAGEVRDGLQDYLDATGYRRVLLLMALPGLETPLALRSMRLFAEAVAPAMRGTVPMTR*
Ga0075435_10044954623300007076Populus RhizosphereGWALIGTPAEVRDGLSRYLDATGYERVLLLMALPGLSTELALGSMRLFAEEVAPKLERGR
Ga0075435_10134860523300007076Populus RhizosphereIGTPGEVRDGLQAYVDATGHRRMLLVMALPGLETGPALESMRLFAEQVAPALERSGSAAP
Ga0066710_10103032533300009012Grasslands SoilLIGTPDEVRDGLQHHVATLGYRRVLLLMALPGMATDLALRSMRLFAEQVAPAMRAVTQNA
Ga0066710_10468443913300009012Grasslands SoilLFGTPGEVRDGLQQYLDATGYQRVLLLMALPGIETALALRSMRLFAEEVAPALTPVAAG
Ga0111539_1086720323300009094Populus RhizosphereMALVGTPADVRKGLQEFVDATGHGRGLLLMAVPGLPTELALRSMHLFAEEAG*
Ga0075418_1140630513300009100Populus RhizosphereTLTAIGTPDEVRDGLNRYLDATGYERVLLVMALPGLSTELALRSMRLFAEEVGPKLERAR
Ga0105243_1034735723300009148Miscanthus RhizosphereVGTPDEVRDDLQRFREATGYERVLLVMALPGLDTGRALRSMRLFAEHIAPVMVPV*
Ga0126374_1149108823300009792Tropical Forest SoilDGLQQYCEVTGYGRVLLVMALPGLDTHVALRSMRLFAEEVAPAMTPVAGRA*
Ga0105081_102433223300009806Groundwater SandFLVQRLQQYLEATGYRRVMLLMALPGLDTALALRSMRLFADEVAPAMAPVAPAQR*
Ga0126382_1117614123300010047Tropical Forest SoilVRKQFQEYLDATGYQRVMLLMAIPGLDTELALRSMRLFAEESW*
Ga0126373_1159245813300010048Tropical Forest SoilDYLADGWALIGTPAEVRDGLQQYCEVTGYGRVLLVMALPGLDTHVALRSMRLFAEEVAPAMTPVAGRA*
Ga0134063_1048132813300010335Grasslands SoilGTPAEVRDGLQQYLEVTGYQRVLLLMALPGLPTPLALRSMRMFATEVAPALTQVAQPR*
Ga0105246_1034420923300011119Miscanthus RhizosphereEVREGLQAYLHATGYHRVLLLMALPGLDTRHALRSMRLFASDVAPALTGDLLRA*
Ga0137352_111469413300012164SoilLDDGWALVGTPGEVRDGLQSYLLATGYQRVLLLMALPGLDTSLALRSMRLFAEQVAPALAPPTRRVATGP*
Ga0137365_1106087223300012201Vadose Zone SoilGSPDDVKDGLQSYLDATGYRRVLLLMAMPGLETERALSSMRLFAEQVAPAMKSVPQSA*
Ga0137376_1097092813300012208Vadose Zone SoilIGTPAEVRDGLQQYLDATGYQRVLLLMALPGLETPLALRSMRLFAEEVAPKLT*
Ga0137375_1006193843300012360Vadose Zone SoilDEYLATGWTLLGTADEVREGLQQYLEATGYQRVLLLMALPGLPTGLALRSMRLFQEKVAPGMTSVR*
Ga0137397_1074480223300012685Vadose Zone SoilVRDGLQKYRDATGYERVLLVMALPGMNTGLALRSMRLFAEEIAPAIVPA*
Ga0137396_1000209213300012918Vadose Zone SoilWALIGTPAEVRDGLSRYLEATGYERVLLLMALPGLSTELALRSMRLFAEEVAPKLDHGREAA*
Ga0137396_1125680613300012918Vadose Zone SoilDYLDDGWALIGTPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFADEVAPALVPA*
Ga0137394_1039956423300012922Vadose Zone SoilDEYLATGWTLIGTADEVRESLQQYLEATGYQRVMLLMALPGLDTALALRSMRLFVDEVVPAMTPVAPAQL*
Ga0137394_1123791613300012922Vadose Zone SoilALIGTPDEVRDGLDRYLEATGYERVLLLMALPGLSTDLALRSMRLFAEEVSPKLERRR*
Ga0137404_1001467013300012929Vadose Zone SoilEYLADGWALIGTPAEVRDRLQQYLEATGYQRVLLLMALPGIETTLALRSMRMFAEQVAPALAAPAAASGQR*
Ga0137410_1005556543300012944Vadose Zone SoilALIGTPAEVRDGLSRYLEATGYERVLLLMALPGLSTELTLRSMRLFAEEVAPAMAMPA*
Ga0137410_1076559123300012944Vadose Zone SoilEYLADGWALIGTAADVRDGLQQYLEVTGYQRVLLLMALPGLPTALALRSMRLFTTEVAPALTQVAQPR*
Ga0126375_1026923523300012948Tropical Forest SoilIGTPSEVRKQLQEYLDATGYQRVMLLMAVPGLETELALRSMRLFAEEIW*
Ga0134077_1046081613300012972Grasslands SoilLTDGWALIGAPAEVRDGLQQYLDATGYQRVLLLMALPGIETALALRSMRLFAEAVAPAVSGVVHAHRGGR*
Ga0164304_1178403913300012986SoilVRAGLNRYLDATGYERVLLLMALPGLSTDLALRSMRLFADEVAPKVARRR*
Ga0075310_116180613300014302Natural And Restored WetlandsATGWTLLGTADEVREGLQQYLEATGYRRVLLLMALPGLDTALALRSMRLFAEKVAPAVAPV*
Ga0180080_103364723300014870SoilEVRDRLLAYLEATGYHHVLLLMALPGLGTPEALRSMRLFAEEVRPAMKSVAQRA*
Ga0137420_132813023300015054Vadose Zone SoilAEVTDGLQQYLDATGYQRVLLLMALPGIETPLALRSMRLFAEEVAPKLT*
Ga0137409_1009019213300015245Vadose Zone SoilGWALIGTPAEVRDGLSRYLEATGYERVLLLMALPGLSTELTLRSMRLFAEEVAPAMAMPA
Ga0180085_115533013300015259SoilLVGTPSEVRKQLQEYLDATGYQRVMLLMAVPGLETNLALRSMRLFAEESW*
Ga0132256_10271351613300015372Arabidopsis RhizosphereDGWALIGTPSQVRDGLQQYLDATGYQRVLLLMALPGIDTKLALRSMRLFTEQVAPALVASVAQVRLA*
Ga0184608_1012936123300018028Groundwater SedimentFREYLDDGWALIGTSAEVRDGLQKYLDATGYRHVLLLMALPGLDTSLALRSMRLFAEQVAPAMAPANRPVATGR
Ga0184608_1029243313300018028Groundwater SedimentYLADGWALIGTPGEVRDGLQTYLDATGYQHVLLLMALPGLDTSLALRSMRLFAEQVAPAMAPANRRVATGP
Ga0184634_1005987413300018031Groundwater SedimentLATDWMIIGTAEAVREGLEQYLEATGYRRVLLLMALPGLATGLALRSMRLFQEKVAPAMTSVR
Ga0184625_1019172413300018081Groundwater SedimentIGTPSDVRKGLQEYLDATGYQRVMLLMAVPGLENNLALRSMRLFAEESW
Ga0184625_1053957813300018081Groundwater SedimentQDYLADGWALIGTPDEVRDGLNCYLDATGYERVLLLMALPGLSTDLALRSMRLFADEVAPKLARRR
Ga0066667_1023114723300018433Grasslands SoilLRRFEEYLATGWTLIGTADEVRESLQQYLEATGYQRVMLLMALPGLDTALALRSMRLFVDEVVPAMTPVAPAQL
Ga0194127_1042394423300020221Freshwater LakeLQAVLEVSGHQRVLLVMALPALDTDVALRSMRLFAEKVGPALRPVALSA
Ga0210378_1026748313300021073Groundwater SedimentFEEYLATDWMIIGTAEAVREGLEQYLEATGYRRVLLLMALPGLATGLALRSMRLFQEKVAPAMTSVR
Ga0210381_1033209023300021078Groundwater SedimentIIGTAEAVREGLEQYLEATGYRRVLLLMALPGLATGLALRSMRLFQEKVAPAMTSVR
Ga0210377_1030106413300021090Groundwater SedimentGTADEVREGLQQYIEATGYQRVLLLMALPGLPTGLAVRSMRLFQEKVAPAMTSVR
Ga0126371_1269714123300021560Tropical Forest SoilQGLQEYMDATGHQRVMLLMALPGLATNLALESMRLFAEEVAPILKPIAC
Ga0224452_111204223300022534Groundwater SedimentWMIIGTAEAVREGLEQYLEATGYRRVLLLMALPGLATGLALRSMRLFQEKVAPAMTSVR
Ga0210108_101976023300025560Natural And Restored WetlandsTPEEVRDGLRKYCDATGYERVLLVMALPGMEAGLALRSMRLFSEQIAPAMLPA
Ga0207642_1087875823300025899Miscanthus RhizosphereMIGSPDEVRDRLQEYLEATGYHHVLLLMALPGLGTAEALRSMRLFAEEVRPGMKPHAQRA
Ga0207684_1040493723300025910Corn, Switchgrass And Miscanthus RhizosphereIGTPAEVRDSLRQYRDVTGYERVLLVMALPGLDTSLALRSMRLFAEEVAPAMVPVAGRRN
Ga0207646_1020163013300025922Corn, Switchgrass And Miscanthus RhizospherePAEVRDSLRQYRDVTGYERVLLVMALPGLDTSLALRSMRLFAEEVAPAMVPVAGRRGNP
Ga0207681_1169544313300025923Switchgrass RhizosphereMVGSPDEVRESLQRYLDAAAFGRVMLLMALPGLETDLALRSMRLFAEEVAPALEGQLRA
Ga0207704_1008931913300025938Miscanthus RhizosphereEVRDGLRQYVEATGHQRILLLMALPGLETEAALRSMRLFTEKVAPELTAVVPK
Ga0207641_1218268213300026088Switchgrass RhizosphereGRALIGTPDEVRDGLRQYVEATGHQRILLLMALPGLETEAALRSMRLFTETVAPELAAVVPK
Ga0207676_1259913523300026095Switchgrass RhizospherePDEVREGLQQYLEATGYQRVLLLMALPGLSTALALRSMRLFAEKVAPAVAAV
Ga0207675_10168120223300026118Switchgrass RhizosphereDYLSDGWALIGTAAEVRDGLQLFLEVTGYQRVLLLTALPGLPTPLALRSMKMFMTEVAPALRQVAQPR
Ga0209155_120975423300026316SoilTPAHVRDGLQQYLEATSYQRVLLLMALPGIETKLALRSMRLFAEQVAPALTPPAVSARVG
Ga0209802_124634123300026328SoilLRRFEEYLATGWTLIGTADEVRESLQQYLEATGYQRVMLLMALPGLDTALALRSMRLFVDEV
Ga0209267_106037723300026331SoilPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFAEKVAPALA
Ga0209158_121620013300026333SoilTAAEVRDGLSRYLDATGYERVLLLMALPGLSTELAFRSMRLFADEVAPKLERGR
Ga0257176_106918013300026361SoilYLGDGWALIGTPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFADKVAPALVPA
Ga0257158_110835713300026515SoilLIGTPDEVRDGLQKYCEATGYGRVLLVMALPGLRTDLALRSMRLFADKVAPALVPA
Ga0256867_1006187013300026535SoilATGWTLLGTADEVREGLQQYLEATGYRRVLLLMALPGLDTALALRSMRLFAEKVAPAVAP
Ga0209869_102646813300027187Groundwater SandFLVQRLQQYLEATGYRRVMLLMALPGLDTALALRSMRLFADEVAPAMAPVAPAQR
Ga0209689_107625613300027748SoilALIGTPAEVRDGLQQYLDATGYQRVLLLMALPGLETPLALRSMRLFAEEVAPKLT
Ga0209689_113268313300027748SoilALIGTPAEVRDGLQQYLDATGYQRVLLLMALPGIETPLALRSMRLFADEVAPKLSAPVAPQRSW
Ga0209382_1182893323300027909Populus RhizosphereEEYLATGWTLLGTADEVREGLRQYLEATGYQRVLLLMALPGLPTGLALRSMRLFAEQVAPAVTAV
Ga0209526_1015044413300028047Forest SoilEVRDGLQKYRDATGYERVLLVMALPGMNTGLALRSMRLFAEEIAPAIVPA
Ga0307313_1028525923300028715SoilDDGWALIGTSAEVRDGLQKYLDATGYRHVLLLMALPGLDTSLALRSMRLFAEQVAPAMAPANRPVATGR
Ga0307296_1032715213300028819SoilDGWALIGTSAEVRDGLQKYLDATGYRHVLLLMALPGLDTSLALRSMRLFAEQVAPAMAPANRPVATGR
Ga0299907_1062613213300030006SoilEYLATGWTLLGTADEVREGLQQYLEATGYRRVLLLMALPGLDTALALRSMRLFAEKVAPAMAPV
Ga0299907_1106470423300030006SoilVREGLQQYLEATGYRRVLLLMALPGLDTALALRSMRLFAEKVAPAVAPV
Ga0307500_1010853313300031198SoilLIGTPDEVRDGLNRYLDATGYERVLLLMALPGLSTDLALRSMRLFADEVAPKLARRR
Ga0318560_1045018813300031682SoilTPDEVRAGLERYLDATGYERVLLVMALPGLATELALRSMRLFAEEVAPKLSPRRQSP
Ga0307468_10115510413300031740Hardwood Forest SoilFQDYLSDGWALIGTAAEVRDGLQQFLEVTGYQRVLLLTALPGLPTPLALRSMKMFMTEVAPALRQVAQPR
Ga0306925_1166546913300031890SoilRAGLERYLDATGYERVLLVMALPGLATELALRSMRLFAEEVAPKLSPRRQSP
Ga0310903_1037646013300032000SoilGTPDEVREGLQQYLEATGYQRVLLLMALPGLPTALALRSMRLFAEKVAPAVASV
Ga0307471_10129773813300032180Hardwood Forest SoilEVRDGLSRYVEATGYERVLLLMALPGLSTELTLRSMRLFSEEVASRLD
Ga0247830_1011635313300033551SoilCDGLQQYLEATGYQRVLLLMAVPGLPTDLALRSMRLFVDQVAPALTPVAAPAWSAP
Ga0364934_0101210_892_10683300034178SedimentMIIGTAEAVREGLDQYLEATGYRRVLLLMALPGLPTGLALRSMRLFQEKVAPAMTSVR
Ga0314794_068662_544_7053300034669SoilPDEVRDGLEQYLEATGYERVLLLMALPGLPTELALRSMRLFAEEVAPKLERAR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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