NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F082641

Metagenome / Metatranscriptome Family F082641

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F082641
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 54 residues
Representative Sequence MKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSAGATA
Number of Associated Samples 100
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.11 %
% of genes near scaffold ends (potentially truncated) 30.97 %
% of genes from short scaffolds (< 2000 bps) 79.65 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (92.035 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands
(7.965 % of family members)
Environment Ontology (ENVO) Unclassified
(32.743 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(39.823 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.78%    β-sheet: 0.00%    Coil/Unstructured: 51.22%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF00873ACR_tran 41.59
PF02310B12-binding 12.39
PF04055Radical_SAM 9.73
PF13519VWA_2 3.54
PF13767DUF4168 2.65
PF00571CBS 2.65
PF00664ABC_membrane 0.88
PF07750GcrA 0.88
PF13533Biotin_lipoyl_2 0.88
PF03176MMPL 0.88
PF09864MliC 0.88
PF00753Lactamase_B 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG1033Predicted exporter protein, RND superfamilyGeneral function prediction only [R] 0.88
COG2409Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamilyGeneral function prediction only [R] 0.88
COG5352Uncharacterized conserved proteinFunction unknown [S] 0.88

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.04 %
UnclassifiedrootN/A7.96 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090015|GPICI_8953971All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1380Open in IMG/M
3300000156|NODE_c0668733All Organisms → cellular organisms → Bacteria2680Open in IMG/M
3300000891|JGI10214J12806_13077089All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium831Open in IMG/M
3300000953|JGI11615J12901_11117968All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1067Open in IMG/M
3300001976|JGI24752J21851_1008849All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1313Open in IMG/M
3300001990|JGI24737J22298_10014632All Organisms → cellular organisms → Bacteria2546Open in IMG/M
3300003319|soilL2_10068373All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1550Open in IMG/M
3300003324|soilH2_10294338All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1845Open in IMG/M
3300003911|JGI25405J52794_10006035All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2205Open in IMG/M
3300003994|Ga0055435_10129382All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria690Open in IMG/M
3300004024|Ga0055436_10045647All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1174Open in IMG/M
3300004062|Ga0055500_10058896All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria786Open in IMG/M
3300004114|Ga0062593_101543265All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria718Open in IMG/M
3300004145|Ga0055489_10020113All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1592Open in IMG/M
3300004156|Ga0062589_101237734All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria717Open in IMG/M
3300004157|Ga0062590_100660452All Organisms → cellular organisms → Bacteria933Open in IMG/M
3300004463|Ga0063356_103083617All Organisms → cellular organisms → Bacteria → Proteobacteria718Open in IMG/M
3300004463|Ga0063356_106141087All Organisms → cellular organisms → Bacteria → Proteobacteria515Open in IMG/M
3300004480|Ga0062592_101726086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales610Open in IMG/M
3300004643|Ga0062591_102085233All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria587Open in IMG/M
3300005093|Ga0062594_100052470All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2100Open in IMG/M
3300005093|Ga0062594_101347218All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300005103|Ga0066813_1001875All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales852Open in IMG/M
3300005162|Ga0066814_10016487All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria981Open in IMG/M
3300005162|Ga0066814_10018748All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria941Open in IMG/M
3300005168|Ga0066809_10050288All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria933Open in IMG/M
3300005183|Ga0068993_10058137All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1146Open in IMG/M
3300005276|Ga0065717_1000133All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2951Open in IMG/M
3300005280|Ga0065696_1219476All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088530Open in IMG/M
3300005329|Ga0070683_101359142All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria683Open in IMG/M
3300005332|Ga0066388_100324543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2185Open in IMG/M
3300005332|Ga0066388_101570268All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1156Open in IMG/M
3300005340|Ga0070689_101361096All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria640Open in IMG/M
3300005438|Ga0070701_10938955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria600Open in IMG/M
3300005440|Ga0070705_100164460All Organisms → cellular organisms → Bacteria1487Open in IMG/M
3300005440|Ga0070705_100480702All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria938Open in IMG/M
3300005529|Ga0070741_10004486All Organisms → cellular organisms → Bacteria32540Open in IMG/M
3300005530|Ga0070679_101701108All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria579Open in IMG/M
3300005547|Ga0070693_100217758All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1249Open in IMG/M
3300005618|Ga0068864_102239769All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria553Open in IMG/M
3300005764|Ga0066903_106276184All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria621Open in IMG/M
3300005764|Ga0066903_107961437All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria544Open in IMG/M
3300005841|Ga0068863_102573140All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria518Open in IMG/M
3300005842|Ga0068858_100637966All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1035Open in IMG/M
3300006042|Ga0075368_10150793All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales971Open in IMG/M
3300006604|Ga0074060_11830025All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria582Open in IMG/M
3300006806|Ga0079220_10568146Not Available796Open in IMG/M
3300006845|Ga0075421_102391105Not Available553Open in IMG/M
3300006854|Ga0075425_100084121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3600Open in IMG/M
3300009177|Ga0105248_11404683All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300009553|Ga0105249_10115097All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2547Open in IMG/M
3300010359|Ga0126376_12248094All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria591Open in IMG/M
3300010362|Ga0126377_10032984All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4393Open in IMG/M
3300010362|Ga0126377_10159459All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales2127Open in IMG/M
3300010371|Ga0134125_11396665All Organisms → cellular organisms → Bacteria → Proteobacteria763Open in IMG/M
3300010371|Ga0134125_12727841Not Available537Open in IMG/M
3300010396|Ga0134126_11850463All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales661Open in IMG/M
3300012489|Ga0157349_1036791All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300012494|Ga0157341_1018883All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300012508|Ga0157315_1002548All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1149Open in IMG/M
3300012513|Ga0157326_1006829All Organisms → cellular organisms → Bacteria1225Open in IMG/M
3300012896|Ga0157303_10000934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3894Open in IMG/M
3300012901|Ga0157288_10000021All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales15444Open in IMG/M
3300012907|Ga0157283_10021215All Organisms → cellular organisms → Bacteria1234Open in IMG/M
3300012910|Ga0157308_10308847All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria582Open in IMG/M
3300012943|Ga0164241_11042856All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300012948|Ga0126375_10008850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales4123Open in IMG/M
3300012985|Ga0164308_10510996All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1007Open in IMG/M
3300014262|Ga0075301_1067553All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300014321|Ga0075353_1120053All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300015371|Ga0132258_10282287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4075Open in IMG/M
3300015371|Ga0132258_13055592All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1158Open in IMG/M
3300015372|Ga0132256_102575603All Organisms → cellular organisms → Bacteria → Proteobacteria609Open in IMG/M
3300015373|Ga0132257_100955213All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1077Open in IMG/M
3300015374|Ga0132255_102697313All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300015374|Ga0132255_104608145All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales584Open in IMG/M
3300019356|Ga0173481_10000447All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales8787Open in IMG/M
3300021560|Ga0126371_12007911All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales696Open in IMG/M
3300022737|Ga0247747_1003598All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1479Open in IMG/M
3300022901|Ga0247788_1005967All Organisms → cellular organisms → Bacteria1978Open in IMG/M
3300025538|Ga0210132_1014463All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1075Open in IMG/M
3300025900|Ga0207710_10072385All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1583Open in IMG/M
3300025901|Ga0207688_10014620All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4264Open in IMG/M
3300025907|Ga0207645_10140378All Organisms → cellular organisms → Bacteria1574Open in IMG/M
3300025912|Ga0207707_10311679All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1359Open in IMG/M
3300025917|Ga0207660_10124985All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1952Open in IMG/M
3300025925|Ga0207650_10504756All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1011Open in IMG/M
3300025932|Ga0207690_11696131Not Available528Open in IMG/M
3300025959|Ga0210116_1020079All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1240Open in IMG/M
3300025965|Ga0210090_1016112All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1021Open in IMG/M
3300025985|Ga0210117_1021267All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria949Open in IMG/M
3300026035|Ga0207703_10103068Not Available2422Open in IMG/M
3300026116|Ga0207674_11187751All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300026725|Ga0207474_102081All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria639Open in IMG/M
3300026995|Ga0208761_1013173All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria731Open in IMG/M
3300027765|Ga0209073_10249769Not Available689Open in IMG/M
3300027775|Ga0209177_10486532Not Available512Open in IMG/M
3300027866|Ga0209813_10062847All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1189Open in IMG/M
3300027876|Ga0209974_10059924All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1287Open in IMG/M
3300027992|Ga0247750_1002892All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1280Open in IMG/M
(restricted) 3300031150|Ga0255311_1000248All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici7794Open in IMG/M
(restricted) 3300031150|Ga0255311_1118363Not Available579Open in IMG/M
(restricted) 3300031197|Ga0255310_10032088All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1359Open in IMG/M
3300031716|Ga0310813_10019258All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4624Open in IMG/M
3300031720|Ga0307469_12475719All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria507Open in IMG/M
3300031740|Ga0307468_100014791All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3225Open in IMG/M
3300031858|Ga0310892_10544185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales779Open in IMG/M
3300031913|Ga0310891_10004295All Organisms → cellular organisms → Bacteria3005Open in IMG/M
3300031913|Ga0310891_10123950All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria816Open in IMG/M
3300032174|Ga0307470_10650175All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria796Open in IMG/M
3300032174|Ga0307470_11675422All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria534Open in IMG/M
3300032205|Ga0307472_100623568All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales956Open in IMG/M
3300033513|Ga0316628_100252183Not Available2162Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands7.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil7.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.31%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere5.31%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.42%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.54%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.54%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.54%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.54%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.65%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil2.65%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.65%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere2.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.65%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.77%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.77%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.77%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.77%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere1.77%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.77%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.89%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.89%
Switchgrass Rhizosphere Bulk SoilHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere Bulk Soil0.89%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.89%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.89%
Sugar Cane Bagasse Incubating BioreactorEngineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090015Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000156Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobicEngineeredOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300001976Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7Host-AssociatedOpen in IMG/M
3300001990Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3Host-AssociatedOpen in IMG/M
3300003319Sugarcane bulk soil Sample L2EnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300003911Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300003994Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004024Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004145Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005103Soil and rhizosphere microbial communities from Laval, Canada - mgLAAEnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005183Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300005276Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5Host-AssociatedOpen in IMG/M
3300005280Switchgrass rhizosphere microbial community from Michigan, USA - East Lansing bulk soilHost-AssociatedOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006042Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3Host-AssociatedOpen in IMG/M
3300006604Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012489Unplanted soil (control) microbial communities from North Carolina - M.Soil.5.yng.040610EnvironmentalOpen in IMG/M
3300012494Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610Host-AssociatedOpen in IMG/M
3300012508Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510Host-AssociatedOpen in IMG/M
3300012513Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510Host-AssociatedOpen in IMG/M
3300012896Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012907Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1EnvironmentalOpen in IMG/M
3300012910Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300014262Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1EnvironmentalOpen in IMG/M
3300014321Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300019356Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022737Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5EnvironmentalOpen in IMG/M
3300022901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4EnvironmentalOpen in IMG/M
3300025538Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025959Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025965Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025985Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026725Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026995Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027866Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027992Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPICI_030185302088090015SoilMKCWREPSLEDILSDPITQAVISADGVDTGELEAMLRQVAHKRRSVRRSAGATA
NODE_066873353300000156Sugar Cane Bagasse Incubating BioreactorMKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVSRSGATAWL*
JGI10214J12806_1307708913300000891SoilILSDPITQAVISADRVDTGELDAMLRQVAHKRRSVRRSAGATA*
JGI11615J12901_1111796823300000953SoilMKYCREPSLEDILADPIIQAVIDADGVDAHELDAMLRGVARKRRSAERTASFAPW*
JGI24752J21851_100884923300001976Corn, Switchgrass And Miscanthus RhizosphereLSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR*
JGI24737J22298_1001463213300001990Corn RhizosphereWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
soilL2_1006837323300003319Sugarcane Root And Bulk SoilMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRQIAHKRRSVRRSAGATT*
soilH2_1029433823300003324Sugarcane Root And Bulk SoilMNCCREPSLEDILSDPIVKAVIDADGLDANELDAMLRGVAQRRRSVQRTVGARP*
JGI25405J52794_1000603523300003911Tabebuia Heterophylla RhizosphereMHFLPVRQSKVNPMTCWREPSLEDILSDPITKAVISADGVDTGELDAMLRCVAQKRRSAERSTGAAVWRR*
Ga0055435_1012938213300003994Natural And Restored WetlandsMKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGVGVVS*
Ga0055436_1004564713300004024Natural And Restored WetlandsMKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAAGSIGRGR*
Ga0055500_1005889613300004062Natural And Restored WetlandsMKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR*
Ga0062593_10154326523300004114SoilMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVEHKRRSAPDSIGRGR*
Ga0055489_1002011323300004145Natural And Restored WetlandsMKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGIGVVS*
Ga0062589_10123773423300004156SoilMRCYREPSLEDILADPIIQAVIDADGVDANELDAMLRGVAHERRSAEGMASAAWRRW*
Ga0062590_10066045223300004157SoilMRCWREPSLEEILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA*
Ga0063356_10308361723300004463Arabidopsis Thaliana RhizosphereMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR*
Ga0063356_10614108723300004463Arabidopsis Thaliana RhizosphereMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRHVAHKRRSTADSIGRGR*
Ga0062592_10172608623300004480SoilMNYCREPSLEDILSDPIIKAVIDADGVDANELGAMLRRVANTRRLAADSVGRRW*
Ga0062591_10208523313300004643SoilIRSRFMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0062594_10005247023300005093SoilMKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL*
Ga0062594_10134721823300005093SoilILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA*
Ga0066813_100187523300005103SoilMRACREPSLQDILSDPITRAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0066814_1001648723300005162SoilMRACREPSLHDILSDPITQAVISADGVDTGELEAMLRQVAQKRRSAADSMGRGR*
Ga0066814_1001874823300005162SoilMKCWREPSLEDILSDPITQAVISADGVNTGELDAMLRWVAHKRRSAQRSASATA*
Ga0066809_1005028813300005168SoilMRACREPSLQDILSDPITQAVISADGVDTGELDPMLRQVAQKRRSAADSMGRGR*
Ga0068993_1005813723300005183Natural And Restored WetlandsMKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR*
Ga0065717_100013333300005276Arabidopsis RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0065696_121947613300005280Switchgrass Rhizosphere Bulk SoilMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSAGATA*
Ga0070683_10135914213300005329Corn RhizosphereMKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRS
Ga0066388_10032454343300005332Tropical Forest SoilMTCWREPSLEDILSDPIVKAVIDADDVDTNELDAMLRRVAHKRRVDFGATMRQ*
Ga0066388_10157026823300005332Tropical Forest SoilMNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAQKRRSAERSMGASVWRR*
Ga0070689_10136109623300005340Switchgrass RhizosphereEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQRSASATA*
Ga0070701_1093895513300005438Corn, Switchgrass And Miscanthus RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQRSASATA*
Ga0070705_10016446013300005440Corn, Switchgrass And Miscanthus RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA*
Ga0070705_10048070223300005440Corn, Switchgrass And Miscanthus RhizosphereMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVAHKRRSAANSIGHGR*
Ga0070741_10004486373300005529Surface SoilMKCCREPSLEDILSDPIVKAVIDADGVDTNELNAMLRCVAHRRRSLERGAPLVARR*
Ga0070679_10170110823300005530Corn RhizosphereMKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGA
Ga0070693_10021775823300005547Corn, Switchgrass And Miscanthus RhizosphereMKCWREPSPEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGAMAWL*
Ga0068864_10223976913300005618Switchgrass RhizosphereAIRSRFMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR
Ga0066903_10627618423300005764Tropical Forest SoilMTCWREPSLEDILSDPIVKAVIEADDVDTNELDAMLRRVAHKRRVGLGATARQ*
Ga0066903_10796143713300005764Tropical Forest SoilMTCWREPSLEDILSDPIIRAVIEADGVDTTELNAMLRRIAHKRGAAAAGATH*
Ga0068863_10257314013300005841Switchgrass RhizospherePSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0068858_10063796623300005842Switchgrass RhizosphereMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0075368_1015079323300006042Populus EndosphereMKCYRELSLEDMLADPIIQAVIDAVGVDANELDAMLRGVAHERRSAERMASAAWRR*
Ga0074060_1183002523300006604SoilMKCWREPSLEDILSDPITQAVISADGVNTGELDAMLRWVAHKRRSAQRS
Ga0079220_1056814613300006806Agricultural SoilSLEDILSDPITQAVISADGVDTGELDAMLRGVVQKRRSAERATGAAFWRR*
Ga0075421_10239110513300006845Populus RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELEAMLRQVAHKRRSVRRSAGATA*
Ga0075425_10008412123300006854Populus RhizosphereMNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRCVAQKRRSAERSMGATVWRR*
Ga0105248_1140468313300009177Switchgrass RhizosphereIRSRFMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0105249_1011509723300009553Switchgrass RhizosphereMKCWREPSLEDILSDPITQAVISADAVDTGELDALLRRVAHKRRSAQRSASATA*
Ga0126376_1224809423300010359Tropical Forest SoilMNCWREPSLEDILSDPITKAVIEADGVDMHELGAMLRQIAQQRRTGVSATMRV*
Ga0126377_1003298423300010362Tropical Forest SoilMTCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRRVAHKRRVGFSAATRQ*
Ga0126377_1015945923300010362Tropical Forest SoilMNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRCVAHKRRKAEGALLTKMR*
Ga0134125_1139666523300010371Terrestrial SoilMKCWREPSLEDILSDPITQAVISADGVDTNKLDAMLRHVANTRRSTANSIGRGG*
Ga0134125_1272784123300010371Terrestrial SoilMKCWREPSLEDILSDPITQAVISADRVDANELDAMLRRVAQSRRLVADSIGQGR*
Ga0134126_1185046323300010396Terrestrial SoilMKCWREPSPEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL*
Ga0157349_103679113300012489Unplanted SoilLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157341_101888313300012494Arabidopsis RhizosphereEPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157315_100254823300012508Arabidopsis RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASAT
Ga0157326_100682923300012513Arabidopsis RhizosphereSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157303_1000093413300012896SoilMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRR
Ga0157288_10000021123300012901SoilMKCYRELCLEDMLADPIIQAVIGADGVDANELDAMLRGVAHERRSAERMASAAWRR*
Ga0157283_1002121513300012907SoilQAIRSRFMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA*
Ga0157308_1030884723300012910SoilMNYCREPSLEDILSDPIIKAVIDADGVDANELGAMLRRVANARRLAADSVGRGW*
Ga0164241_1104285623300012943SoilMNYCREPSLEDILSDPIIKAVIDADGVDANELGAMLRRVANTRRLAADSVGRGW*
Ga0126375_1000885063300012948Tropical Forest SoilMTYWREPSLEDILSDPIVKAVIDADDVDTNELDAMLRRVAHKRRVDFGATMRQ*
Ga0164308_1051099613300012985SoilMKCWREPSLEDILSDPITQAVISADGVDENELDAMLRRVAHTRRSTADSIGRGR*
Ga0075301_106755313300014262Natural And Restored WetlandsCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGVGVVS*
Ga0075353_112005313300014321Natural And Restored WetlandsRSRSMKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR*
Ga0132258_1028228723300015371Arabidopsis RhizosphereMIFCRNKKPGVSPMRECREPSLQDILSDPITQAVISADGVDTGELDAMLRQVAQKRRSAADSMGRGR*
Ga0132258_1305559223300015371Arabidopsis RhizosphereMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVAHKRRSAANSIGRGR*
Ga0132256_10257560323300015372Arabidopsis RhizosphereMIFCRNKKPGVSPMRACREPSLQDILSDPITQAVISADGVDTGELDAMLRQVAQKRRSAADSMGRGR*
Ga0132257_10095521323300015373Arabidopsis RhizosphereMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRRW*
Ga0132255_10269731323300015374Arabidopsis RhizosphereCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR*
Ga0132255_10460814513300015374Arabidopsis RhizosphereMKCWREPSLEDILSDPITQAVISADRVDANELDDMLRRLAQSRRLV
Ga0173481_1000044723300019356SoilMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR
Ga0126371_1200791113300021560Tropical Forest SoilMKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGHSGATAWL
Ga0247747_100359813300022737SoilMKCWREPSLEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQ
Ga0247788_100596723300022901SoilMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA
Ga0210132_101446323300025538Natural And Restored WetlandsMKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGVGVVS
Ga0207710_1007238523300025900Switchgrass RhizosphereMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIGQGR
Ga0207688_1001462023300025901Corn, Switchgrass And Miscanthus RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDALLRRVAHKRRSAQRSASATA
Ga0207645_1014037813300025907Miscanthus RhizosphereMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVEHKRRSAPDSIGRGR
Ga0207707_1031167923300025912Corn RhizosphereMKCWREPSLEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL
Ga0207660_1012498523300025917Corn RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRQVAHKRRSVRRSAGATA
Ga0207650_1050475613300025925Switchgrass RhizosphereDAMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAAWRR
Ga0207690_1169613113300025932Corn RhizosphereMKCWREPSPEDILSDPIVKAVIEADGVDTNELDAMLRQIAHKRSVGRSGATAWL
Ga0210116_102007923300025959Natural And Restored WetlandsMKCWREPSLEDILSDPLTQAVISADGVDANELDAMLRRVAHKRRSAAGGKGDGIGVVS
Ga0210090_101611233300025965Natural And Restored WetlandsMKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRRVAHQRRSAADSIGRGR
Ga0210117_102126723300025985Natural And Restored WetlandsMKCWRELSLEDILSDPLTQAVISADGVDANELDAMLRCVAHQRRSAADSIGRGR
Ga0207703_1010306813300026035Switchgrass RhizosphereMKCWREPSLEDILSDPITQAVISADRVDASELDAMLRRVAQSRRLVGDSIG
Ga0207674_1118775113300026116Corn RhizosphereCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSASATA
Ga0207474_10208113300026725SoilMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASAA
Ga0208761_101317323300026995SoilMKCWREPSLEDILSDPITQAVISADGVNTGELDAMLRWVAHKRRSAQRSASATA
Ga0209073_1024976923300027765Agricultural SoilLEDILSDPITQAVISADGVDTGELDAMLRGVVQKRRSAERATGAAFWRR
Ga0209177_1048653213300027775Agricultural SoilMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRGVVQKRRSAERATGAAFW
Ga0209813_1006284723300027866Populus EndosphereMKCYRELSLEDMLADPIIQAVIDAVGVDANELDAMLRGVAHERRSAERMASAAWRR
Ga0209974_1005992423300027876Arabidopsis Thaliana RhizosphereMKCWREPSLEDILSDPITQAVISADGVDTGELDAMLRRVAHKRRSAQRSAGATA
Ga0247750_100289213300027992SoilMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAERMASA
(restricted) Ga0255311_100024863300031150Sandy SoilMKCWREPSLEDILSDPITQAVISADGVDIGELDAMLRQVAHKRRSARRSAGATA
(restricted) Ga0255311_111836313300031150Sandy SoilMKCWREPSLEDILSDPITQAVISADGVDTGVLDAMLRQVAHKRRSARRSAGATA
(restricted) Ga0255310_1003208823300031197Sandy SoilMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRRVAHKRRSAADSIGRGR
Ga0310813_1001925823300031716SoilMKCWREPSLEDILSDPITQAVISADGVDANELDAMLRHVAHKRRSTADSIGRGR
Ga0307469_1247571913300031720Hardwood Forest SoilKPGVSPMRACREPSLQDILSDPIIQAVISADGVDPGELDLMLRQVAQKRRSVADSIGRGR
Ga0307468_10001479133300031740Hardwood Forest SoilMNYCREPSLEDILSDPIIKAVIDADGVNANELGAMLRRIANTRRLAAESASRGW
Ga0310892_1054418523300031858SoilMRACREPSLQDILSDPITQAVISADGVDTGELDAMLRQVAQKRRSAADSMGRGR
Ga0310891_1000429523300031913SoilMKCWREPSLEDILSDPITQAVISADAVDTGELDALLRRVAHKRRSAQRSASATA
Ga0310891_1012395023300031913SoilMKCYRELSLEDMLADPIIQAVIDADGVDANELDAMLRGVAHERRSAE
Ga0307470_1065017523300032174Hardwood Forest SoilMNYCREPSLEDILSDPIIKAVIDADGVNANELGAMLRRIANTRRLAA
Ga0307470_1167542223300032174Hardwood Forest SoilMRACREPSLQDILSDPIIQAVISADGVDPGELDAMLRQVAQKRRSTADSIGRGR
Ga0307472_10062356823300032205Hardwood Forest SoilMNCWREPSLEDILSDPITQAVISADGVDTGELDAMLRCVAQKRRSAERSAGAALWRR
Ga0316628_10025218313300033513SoilMTCYREPSLEDILSDPITQAVISADGVDPGQLNTMLRCVAQKRRSAEAAQRFQK

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