Metagenome / Metatranscriptome Family F082956

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082956
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	MKTLNGFAALSLSLILGLVPFALIAVDDFVVAKAGVSTTVAANPEHALGMEGR
Number of Associated Samples	80
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.53 %
% of genes near scaffold ends (potentially truncated)	22.12 %
% of genes from short scaffolds (< 2000 bps)	68.14 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.106 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.743 % of family members)
Environment Ontology (ENVO)	Unclassified (38.053 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.027 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.85% β-sheet: 0.00% Coil/Unstructured: 48.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF06580	His_kinase	31.86
PF01263	Aldose_epim	10.62
PF06629	MipA	3.54
PF11154	DUF2934	2.65
PF00072	Response_reg	1.77
PF04397	LytTR	1.77
PF08448	PAS_4	0.88
PF07805	Obsolete Pfam Family	0.88
PF04945	YHS	0.88
PF07969	Amidohydro_3	0.88
PF00326	Peptidase_S9	0.88
PF00144	Beta-lactamase	0.88
PF16670	PI-PLC-C1	0.88
PF01042	Ribonuc_L-PSP	0.88
PF02798	GST_N	0.88
PF01625	PMSR	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	31.86
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	31.86
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	10.62
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	10.62
COG3713	Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family	Cell wall/membrane/envelope biogenesis [M]	3.54
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	69.91 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	21.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	17.70 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Zoogloeaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae	17.70 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.88 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Uliginosibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium	17.70 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.88 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Uliginosibacterium gangwonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	17.70 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.88 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Uliginosibacterium gangwonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	17.70 %
Sphingomonas sp. BGYR3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. BGYR3	0.88 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001124\|JGI12692J13336_1006833	Not Available	611	Open in IMG/M
3300001454\|JGI20204J15135_1021238	Not Available	605	Open in IMG/M
3300001546\|JGI12659J15293_10109260	Not Available	601	Open in IMG/M
3300001593\|JGI12635J15846_10585475	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300001661\|JGI12053J15887_10018826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	3852	Open in IMG/M
3300001867\|JGI12627J18819_10000248	All Organisms → cellular organisms → Bacteria → Proteobacteria	17635	Open in IMG/M
3300002245\|JGIcombinedJ26739_100393455	All Organisms → cellular organisms → Bacteria → Proteobacteria	1265	Open in IMG/M
3300002917\|JGI25616J43925_10029719	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300004080\|Ga0062385_10047501	All Organisms → cellular organisms → Bacteria → Proteobacteria	1836	Open in IMG/M
3300004082\|Ga0062384_100398675	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300004091\|Ga0062387_101041365	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300004091\|Ga0062387_101385644	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300004092\|Ga0062389_101709724	All Organisms → cellular organisms → Bacteria → Proteobacteria	810	Open in IMG/M
3300005534\|Ga0070735_10343491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	896	Open in IMG/M
3300005591\|Ga0070761_10399306	Not Available	838	Open in IMG/M
3300005602\|Ga0070762_10008188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5171	Open in IMG/M
3300005602\|Ga0070762_10028744	All Organisms → cellular organisms → Bacteria → Proteobacteria	2955	Open in IMG/M
3300005712\|Ga0070764_10180503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1175	Open in IMG/M
3300005712\|Ga0070764_10231621	All Organisms → cellular organisms → Bacteria → Proteobacteria	1046	Open in IMG/M
3300005952\|Ga0080026_10072798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	929	Open in IMG/M
3300005993\|Ga0080027_10042514	All Organisms → cellular organisms → Bacteria → Proteobacteria	1635	Open in IMG/M
3300005994\|Ga0066789_10056911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1706	Open in IMG/M
3300006176\|Ga0070765_101468705	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300009633\|Ga0116129_1030645	All Organisms → cellular organisms → Bacteria → Proteobacteria	1786	Open in IMG/M
3300011120\|Ga0150983_15458918	Not Available	553	Open in IMG/M
3300011271\|Ga0137393_10366221	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300012683\|Ga0137398_10507775	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300012925\|Ga0137419_10191147	All Organisms → cellular organisms → Bacteria → Proteobacteria	1509	Open in IMG/M
3300015160\|Ga0167642_1006293	All Organisms → cellular organisms → Bacteria → Proteobacteria	2161	Open in IMG/M
3300019999\|Ga0193718_1015748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1673	Open in IMG/M
3300020021\|Ga0193726_1000005	All Organisms → cellular organisms → Bacteria → Proteobacteria	784561	Open in IMG/M
3300020021\|Ga0193726_1083317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1471	Open in IMG/M
3300020027\|Ga0193752_1059499	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1639	Open in IMG/M
3300020034\|Ga0193753_10000113	All Organisms → cellular organisms → Bacteria → Proteobacteria	73555	Open in IMG/M
3300020034\|Ga0193753_10001646	All Organisms → cellular organisms → Bacteria → Proteobacteria	18851	Open in IMG/M
3300020034\|Ga0193753_10049441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2260	Open in IMG/M
3300020579\|Ga0210407_10117002	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300020579\|Ga0210407_11180333	Not Available	577	Open in IMG/M
3300020580\|Ga0210403_10000076	All Organisms → cellular organisms → Bacteria → Proteobacteria	107968	Open in IMG/M
3300020580\|Ga0210403_10217642	All Organisms → cellular organisms → Bacteria → Proteobacteria	1567	Open in IMG/M
3300020580\|Ga0210403_11172760	Not Available	593	Open in IMG/M
3300020581\|Ga0210399_10504917	Not Available	1005	Open in IMG/M
3300020582\|Ga0210395_10092167	All Organisms → cellular organisms → Bacteria → Proteobacteria	2237	Open in IMG/M
3300020582\|Ga0210395_10705645	Not Available	754	Open in IMG/M
3300020582\|Ga0210395_10894742	Not Available	660	Open in IMG/M
3300021170\|Ga0210400_10007217	All Organisms → cellular organisms → Bacteria → Proteobacteria	9243	Open in IMG/M
3300021181\|Ga0210388_10065154	All Organisms → cellular organisms → Bacteria → Proteobacteria	3060	Open in IMG/M
3300021401\|Ga0210393_10008325	All Organisms → cellular organisms → Bacteria → Proteobacteria	8139	Open in IMG/M
3300021403\|Ga0210397_10460282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	959	Open in IMG/M
3300021403\|Ga0210397_11358955	Not Available	552	Open in IMG/M
3300021404\|Ga0210389_10048445	All Organisms → cellular organisms → Bacteria	3259	Open in IMG/M
3300021404\|Ga0210389_10090438	All Organisms → cellular organisms → Bacteria → Proteobacteria	2353	Open in IMG/M
3300021404\|Ga0210389_10635489	Not Available	838	Open in IMG/M
3300021405\|Ga0210387_10027404	All Organisms → cellular organisms → Bacteria → Proteobacteria	4470	Open in IMG/M
3300021405\|Ga0210387_10615407	Not Available	965	Open in IMG/M
3300021405\|Ga0210387_11064956	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300021407\|Ga0210383_10344182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1285	Open in IMG/M
3300021407\|Ga0210383_10350008	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273	Open in IMG/M
3300021407\|Ga0210383_11484804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. BGYR3	561	Open in IMG/M
3300021432\|Ga0210384_10034554	All Organisms → cellular organisms → Bacteria → Proteobacteria	4694	Open in IMG/M
3300021474\|Ga0210390_10048052	All Organisms → cellular organisms → Bacteria	3501	Open in IMG/M
3300021474\|Ga0210390_10346863	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257	Open in IMG/M
3300021474\|Ga0210390_11601557	Not Available	513	Open in IMG/M
3300021475\|Ga0210392_10113528	All Organisms → cellular organisms → Bacteria → Proteobacteria	1802	Open in IMG/M
3300021475\|Ga0210392_10783530	Not Available	712	Open in IMG/M
3300021475\|Ga0210392_10795734	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300021475\|Ga0210392_11391404	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300021478\|Ga0210402_10002207	All Organisms → cellular organisms → Bacteria → Proteobacteria	19165	Open in IMG/M
3300021478\|Ga0210402_10020708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5639	Open in IMG/M
3300021478\|Ga0210402_10245303	Not Available	1653	Open in IMG/M
3300021559\|Ga0210409_10286018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1488	Open in IMG/M
3300022726\|Ga0242654_10388289	Not Available	533	Open in IMG/M
3300023259\|Ga0224551_1040357	Not Available	810	Open in IMG/M
3300025463\|Ga0208193_1020973	All Organisms → cellular organisms → Bacteria → Proteobacteria	1754	Open in IMG/M
3300025625\|Ga0208219_1084874	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300025627\|Ga0208220_1016216	All Organisms → cellular organisms → Bacteria → Proteobacteria	2437	Open in IMG/M
3300025633\|Ga0208480_1004587	All Organisms → cellular organisms → Bacteria → Proteobacteria	4689	Open in IMG/M
3300026281\|Ga0209863_10067874	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300027037\|Ga0209005_1000077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	8211	Open in IMG/M
3300027496\|Ga0208987_1016844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1236	Open in IMG/M
3300027528\|Ga0208985_1003387	All Organisms → cellular organisms → Bacteria → Proteobacteria	2844	Open in IMG/M
3300027609\|Ga0209221_1055570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1047	Open in IMG/M
3300027879\|Ga0209169_10238910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	952	Open in IMG/M
3300027895\|Ga0209624_10356419	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300028036\|Ga0265355_1004798	All Organisms → cellular organisms → Bacteria → Proteobacteria	1027	Open in IMG/M
3300028906\|Ga0308309_10926026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	756	Open in IMG/M
3300030043\|Ga0302306_10341827	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300030399\|Ga0311353_10305550	All Organisms → cellular organisms → Bacteria → Proteobacteria	1456	Open in IMG/M
3300030813\|Ga0265750_1036888	Not Available	694	Open in IMG/M
3300030814\|Ga0265741_120000	Not Available	526	Open in IMG/M
3300031022\|Ga0138301_1542999	Not Available	629	Open in IMG/M
3300031040\|Ga0265754_1033692	Not Available	537	Open in IMG/M
3300031057\|Ga0170834_100501708	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300031057\|Ga0170834_107616763	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300031122\|Ga0170822_17078062	Not Available	571	Open in IMG/M
3300031128\|Ga0170823_10898665	Not Available	744	Open in IMG/M
3300031231\|Ga0170824_103589041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1138	Open in IMG/M
3300031231\|Ga0170824_115465306	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300031236\|Ga0302324_100383443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	2106	Open in IMG/M
3300031446\|Ga0170820_12781031	Not Available	761	Open in IMG/M
3300031474\|Ga0170818_108192690	Not Available	710	Open in IMG/M
3300031616\|Ga0307508_10352282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1064	Open in IMG/M
3300031708\|Ga0310686_100093144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	8165	Open in IMG/M
3300031708\|Ga0310686_101192026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4579	Open in IMG/M
3300031708\|Ga0310686_113833069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	3073	Open in IMG/M
3300031715\|Ga0307476_10002833	All Organisms → cellular organisms → Bacteria → Proteobacteria	10279	Open in IMG/M
3300031715\|Ga0307476_10332334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	1117	Open in IMG/M
3300031715\|Ga0307476_11173041	Not Available	563	Open in IMG/M
3300031718\|Ga0307474_10000255	All Organisms → cellular organisms → Bacteria → Proteobacteria	39207	Open in IMG/M
3300031718\|Ga0307474_10000332	All Organisms → cellular organisms → Bacteria → Proteobacteria	34589	Open in IMG/M
3300031718\|Ga0307474_10008184	All Organisms → cellular organisms → Bacteria → Proteobacteria	7544	Open in IMG/M
3300031823\|Ga0307478_10004804	All Organisms → cellular organisms → Bacteria → Proteobacteria	9547	Open in IMG/M
3300032515\|Ga0348332_11854940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Uliginosibacterium → Uliginosibacterium gangwonense	841	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.04%
Aquatic	Environmental → Aquatic	6.19%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.61%
Freshwater	Environmental → Aquatic → Freshwater	6.19%
Peat	Environmental → Terrestrial → Peat	3.54%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Roots	Host-Associated → Plants → Roots	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.37%
Loam	Environmental → Terrestrial → Soil → Loam	17.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.54%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.42%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.42%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.77%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.77%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001124	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3	Environmental	Open in IMG/M
3300001454	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015160	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G7C, Adjacent to main proglacial river, mid transect (Watson river))	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300027037	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030814	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12692J13336_10068331	3300001124	Forest Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTPVAANSVHALG
JGI20204J15135_10212382	3300001454	Arctic Peat Soil	MKTLTGFAALSLSLILGLVPFALIAVNDFVVAKAEVSTTVAAHAEHALGMEGR*
JGI12659J15293_101092602	3300001546	Forest Soil	MKTIHSLAALSLSLILGLAPFALIVADDFVVAKAEVSTSVGANSV
JGI12635J15846_105854752	3300001593	Forest Soil	MKTINGIAALSLSLILGLVPFALIAADDFVVAKAEVSTPVAANSVHALGMEGR*
JGI12053J15887_100188262	3300001661	Forest Soil	MKALNSLAALSLSLILGLAPFAVIAVDDFVVAKAEVSTTVASNPEHALGTEGR*
JGI12627J18819_100002485	3300001867	Forest Soil	MKTLAGLAALSLSLVLGLAPFALIAVDDAVAAKADVATTVASAPEHALGVEGR*
JGIcombinedJ26739_1003934552	3300002245	Forest Soil	MKTIHSLAALSLSLILGLAPFALIVADDFVVAKAEVSTSVGANSVHALGVEGR*
JGI25616J43925_100297193	3300002917	Grasslands Soil	MKTLNSFAALSLSLILGLAPFALIAVNDLAIAKAEMSTTVAANPVHALGMEGR*
Ga0062385_100475013	3300004080	Bog Forest Soil	MKALNYLAALCLSLVLGAAPFALIAVNDFVVAKADVSTAVGSDADHALGTEGR*
Ga0062384_1003986752	3300004082	Bog Forest Soil	MKTIHSLAALPLSLILGLVPFALIAADDFVVAKAEVSTTVAANSVHALGMEGR*
Ga0062387_1010413651	3300004091	Bog Forest Soil	MKTIHSLAALPRSLILGLVPFALIAADDFVVAKAEVSTTVAANSVHALGMEGR*
Ga0062387_1013856441	3300004091	Bog Forest Soil	MKTINSFAALSLSLILGLAPFALIAVDDFVVAKAEVSTTAAAGPEHALGMEGR*
Ga0062389_1017097242	3300004092	Bog Forest Soil	MKTINSFAALSLSLILGLAPFALIAVDDFVVAKAEVSTPVAANSVHALGVEGR*
Ga0070735_103434911	3300005534	Surface Soil	MKALNGLAALSLSLILGLAPFAVIAVDDFVVAKSELSTTAAANPEHALGVEGR*
Ga0070761_103993061	3300005591	Soil	MKTIHGFAALSLSLILGLVPFALIAVNDLVVAKAEVSTTVAANPEHALGVEGR*
Ga0070762_100081882	3300005602	Soil	MKTIHSFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAANSVHALGVEGR*
Ga0070762_100287444	3300005602	Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTPVAANSVHALGVEGR*
Ga0070764_101805031	3300005712	Soil	MKALNYLAALSLSLILGVAPFAVIAIDDFVVAKADVSTTVASDADHALGTEGR*
Ga0070764_102316212	3300005712	Soil	MKTIHGFAALSLSLILGLVPFALIALDDFVVAKAEVSTTVAASPEHALGMEGR*
Ga0080026_100727982	3300005952	Permafrost Soil	EKHMKTLNGLAALSLSLILGLIPFALIAVDDFVVAKAEVSTSAAASPEHALGMEGR*
Ga0080027_100425142	3300005993	Prmafrost Soil	MKTLNGLAALSLSLILGLVPFALIAVDDFVVAAKPNTSTMVASNSEHALGIEGR*
Ga0066789_100569113	3300005994	Soil	TLNGLAALSLSLILGLVPFALIAVDDFVVAAKPNTSTMVASNSEHALGIEGR*
Ga0070765_1014687051	3300006176	Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTAAAGPEHALGMEGR*
Ga0116129_10306452	3300009633	Peatland	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSIPVAANSVHALGVEGR*
Ga0150983_154589182	3300011120	Forest Soil	GFAALSLSLILGLAPFALIAVNDLVVAKAEVSTTVAAHAEHALGMEGR*
Ga0137393_103662212	3300011271	Vadose Zone Soil	MKTLNSFAALSLSLILGLAPFALIAVNDLAVAKAEMSTTVAANPVHALGMEGR*
Ga0137398_105077752	3300012683	Vadose Zone Soil	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKAEFSTTVTSHSEHALGMEGR*
Ga0137419_101911472	3300012925	Vadose Zone Soil	MKTLNSFAALSLSLILGLAPFALIAVNDLAVAKAEISTTVAANPVHALGMEGR*
Ga0167642_10062933	3300015160	Glacier Forefield Soil	MKTIQGLAALPLSLILGLVPFALIALDDFVVAKAEVSTTVAASQEHALGMEGR*
Ga0193718_10157482	3300019999	Soil	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKTEVSTSITPHSEHALGMEGR
Ga0193726_1000005568	3300020021	Soil	MKTIHGLAALPLSLILGLVPFALIAVDDFVVAKAEVSTTVAASPEHALGMEGR
Ga0193726_10833171	3300020021	Soil	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVASHSEHALGMEGR
Ga0193752_10594993	3300020027	Soil	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTAASHSEHALGMEGR
Ga0193753_1000011347	3300020034	Soil	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKTEVSTTAASHSEHALGMEGR
Ga0193753_1000164610	3300020034	Soil	MKALNGFAALSLSLILGLVPFALIAADDFVVAKAEVSTTVASHSEHALGMEGR
Ga0193753_100494411	3300020034	Soil	MKTIHGLAALSLSLILGLVPFALIAVDDFVVAKAEVSTTAAASPEHALGMEGR
Ga0210407_101170023	3300020579	Soil	MKTLNSFAALSLSLILGLAPFALIAANDLVVAKAEFSTTAAANSAHALGMEGR
Ga0210407_111803332	3300020579	Soil	MKTLNGFAALSLSLILGLAPFALIAANDLAVAKSEISTTVAANPVHALGMEGR
Ga0210403_1000007631	3300020580	Soil	MKTLNRFAALSLSLILGLAPFALIAVNDLAVASPKISTAPAANSVHALGM
Ga0210403_102176422	3300020580	Soil	MKTLNSFAALSLSLILGLAPFALIAVNDLAVAKAETSTTVAANPVHALGMEGR
Ga0210403_111727602	3300020580	Soil	AALSIIALETPMKTLNSFAALSLSLILGLTPFALIAADDLVVATSKISTTVAANSAHALGTEGR
Ga0210399_105049172	3300020581	Soil	MKTLNSFAALSLSLILGLTPFALIAADDLVVATSKISTTVAANSAHALGTEGR
Ga0210395_100921672	3300020582	Soil	MKTIHSFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAANSVHALGVEGR
Ga0210395_107056451	3300020582	Soil	MKTLNSFAALSLSLILGLAPFALIAADDLVVAKAELSTTAASNSTHALGMEGR
Ga0210395_108947422	3300020582	Soil	SVSTVYTHQEKHMKTLNGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAANAEHALGMEGR
Ga0210400_100072177	3300021170	Soil	MKTLNSFAALSLSLILGLAPFALIAVNDLAVAKAETSTTVAADPVHALGMEGR
Ga0210388_100651544	3300021181	Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTAAAGPEHALGMEGR
Ga0210393_100083254	3300021401	Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTPVAANSVHALGVEGR
Ga0210397_104602822	3300021403	Soil	TVSIQREILMKTLNSLAALTLSVLLGVAPFAVIAVDDFVVAKAEVSTSVVSNSEHALGTEGR
Ga0210397_113589552	3300021403	Soil	EKHMKTIHSFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAANSVHALGVEGR
Ga0210389_100484454	3300021404	Soil	LILGLTPFALIAADDLVVATSKISTTVAANSAHALGTEGR
Ga0210389_100904383	3300021404	Soil	MKALNGLAALSLSFVLGLAPFALIAVDDAVAAKADVSTTVASAAEHALGLEGR
Ga0210389_106354892	3300021404	Soil	MKTIQGFAALPLSLILGLAPFALIALDDFVVAKAEVSTTVAAGPEHALGMEGR
Ga0210387_100274043	3300021405	Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAASPEHALGMEGR
Ga0210387_106154072	3300021405	Soil	MKTIQGLAALPLSLILGLVPFALIAVDDFVVAKAEVSTTVAAGPEHALGMEGR
Ga0210387_110649562	3300021405	Soil	MKTINSFAALSLSLILGLAPFALIAVDDFVVAKAEVSTSVAANSVHALGVEGR
Ga0210383_103441822	3300021407	Soil	MKTLNGFAALSLSLILGLVPFALIAVDDFVVAKAEASSVAANPEHALGVEGR
Ga0210383_103500082	3300021407	Soil	MKTLNGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAAHAEHALGIEGR
Ga0210383_114848041	3300021407	Soil	MKTVQGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAAHAEHALGIEGR
Ga0210384_100345545	3300021432	Soil	VKTLNGFAALSLSLILGLAPFALIAANDLAVAKSELSTTVAANPVHALGMEGR
Ga0210390_100480525	3300021474	Soil	MKTLNGFAALSLSLILGLAPFALIAANDLVVAKAEVSTTVAAHAEHALGMEGR
Ga0210390_103468632	3300021474	Soil	MKTLNSFAALALSLILGLAPFALIAANDMVVATPRISTTVAANAEHALGMEGR
Ga0210390_116015571	3300021474	Soil	TLAGLAALSLSLVLGLAPFALIAVDDAVAAKADVATTVASAPEHALGVEGR
Ga0210392_101135282	3300021475	Soil	MKTLNGFAAVALSLILGLVPFAVIAVDDFVVAKAEVSTSVASHSEHALGMEGR
Ga0210392_107835301	3300021475	Soil	MKALNYLAALSLSLILGLAPFAVIAVDDFVVAKADVSTTVASDANHALATEGR
Ga0210392_107957342	3300021475	Soil	MKTFHSFAALSLSLILGLAPFALIAVDDFVVAKAEVFTPIAANPEHALGMEGR
Ga0210392_113914041	3300021475	Soil	MKTLHSLAALSLSLILGLAPFAVIAVDDFVVAKGEVSSSSASNPEHALGVEGR
Ga0210402_1000220710	3300021478	Soil	MKTLNSFAALSLSLILGLAPFALIAADDLVVATSKISTTVAANSAHALGTEGR
Ga0210402_100207083	3300021478	Soil	MKTLNGFAALSLSLILGLAPFALIAVDDFVVATAKISTTVASNSEHALGIEGR
Ga0210402_102453032	3300021478	Soil	MKTLNSFAALSLSLILGLAPFALIAADDLVVATSNISTTVAANSAHALGTEGR
Ga0210409_102860181	3300021559	Soil	MKTLNSLAALSLSLILGLAPFALIAANDMAVATPKFSTVVAANSEHALGMEGR
Ga0242654_103882891	3300022726	Soil	KTLNSFAALSLSLILGLAPFALIAADDLVVATSNISTTVAANSAHALGTEGR
Ga0224551_10403572	3300023259	Soil	MKTIQGFAALSLSMILGLAPFALIAVNDFVVAKAEVSTTVAAHAEHALGIEGR
Ga0208193_10209732	3300025463	Peatland	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSIPVAANSVHALGVEGR
Ga0208219_10848742	3300025625	Arctic Peat Soil	MKTIHGFAALSLSLILGLAPFALIAVDDFVVAKAEVSTPVAATAEHALGTEGR
Ga0208220_10162163	3300025627	Arctic Peat Soil	MKTLNGFAALTLSLILGLVPFALIAMDDFVVAKAEVSATAPANAEHALGIEGR
Ga0208480_10045873	3300025633	Arctic Peat Soil	MKTLTGFAALSLSLILGLVPFALIAVNDFVVAKAEVSTTVAAHAEHALGMEGR
Ga0209863_100678742	3300026281	Prmafrost Soil	MKTLNGLAALSLSLILGLVPFALIAVDDFVVAAKPNTSTMVASNSEHALGIEGR
Ga0209005_10000774	3300027037	Forest Soil	MKTLAGLAALSLSLVLGLAPFALIAVDDAVAAKADVATTVASAPEHALGVEGR
Ga0208987_10168442	3300027496	Forest Soil	MKALNSLAALSLSLILGLAPFAVIAVDDFVVAKAEVSTTVASNPEHALGTEGR
Ga0208985_10033873	3300027528	Forest Soil	MKTIHSFAALSLSLILGLAPFALIAMDDFVVAKAEVSTTVAASPEHALGMEGR
Ga0209221_10555701	3300027609	Forest Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTPVAANSVQALGVEGR
Ga0209169_102389101	3300027879	Soil	MKALNYLAALSLSLILGVAPFAVIAIDDFVVAKADVSTTVASDADHALGTEGR
Ga0209624_103564192	3300027895	Forest Soil	MKTIHSLAALSLSLILGLAPFALIVADDFVVAKAEVSTSVGANSVHALGVEGR
Ga0265355_10047982	3300028036	Rhizosphere	MKTIHSFAALSLSLILGLAPFALIAVDDFVVAKAEVSTSVAADSVHALGVEGR
Ga0308309_109260261	3300028906	Soil	AALSLSLILGLTPFALIAADDLVVATSKISTTVAANSAHALGTEGR
Ga0302306_103418271	3300030043	Palsa	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAADPE
Ga0311353_103055502	3300030399	Palsa	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTTVAADPEHALGVEGR
Ga0265750_10368882	3300030813	Soil	MKTIHGFAALSLSLILGLVPFALIAANDFVVAKAEVSTTAPANAEHALGIEGR
Ga0265741_1200001	3300030814	Soil	HGFAALSLSLILGLVPFALIAVDDFVVAKAEVSIPVAANSAHALGVEGR
Ga0138301_15429991	3300031022	Soil	LNGFAALSLSLILGLAPFALIAANDLAVAKAEISTTVAANPVHALGMEGR
Ga0265754_10336922	3300031040	Soil	MKTLNGFAALSLSLILALVPFALIAVDDFVVAKAEVSTTVAANAEHALGMEGR
Ga0170834_1005017082	3300031057	Forest Soil	MKTIHSFAALSLSLILGLAPFALIAVDDFVVAKAEVSTPVAANSVHALGVEGR
Ga0170834_1076167632	3300031057	Forest Soil	MKTLNGFAALSLSLILGLAPFALIAANDLAVAKAEISTTVAANPVHALGMEGR
Ga0170822_170780621	3300031122	Forest Soil	KTLNGFAALSLSLILGLAPFALIAANDLAVAKAEISTTVAANPVHALGMEGR
Ga0170823_108986652	3300031128	Forest Soil	APMKTLNSFAALSLSLILGLAPFALIAADDLVVAKAETSTTVAANSAHALGTEGR
Ga0170824_1035890411	3300031231	Forest Soil	MKALNGFAALSLSLILGLVPFALIAVDDFVVAKAEISTTVASHSEHALGMEGR
Ga0170824_1154653062	3300031231	Forest Soil	MKTLNGFAALSLSLILGLVPFALIAVDDFVVAKAGVSTTVAANPEHALGMEGR
Ga0302324_1003834433	3300031236	Palsa	HGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTPVAANSVHALGVEGR
Ga0170820_127810312	3300031446	Forest Soil	MKALNGFAALSLSLILGLVPFALIAVDDLVVAKAEVSTTAASHSEHALGMEGR
Ga0170818_1081926901	3300031474	Forest Soil	VMKALNGFAALSLSLILGLVPFALIAVDVLVVAKAEVSTTAASHSEHALGMEGR
Ga0307508_103522822	3300031616	Ectomycorrhiza	MKALNGLAALSLSLILGLVPFALIAVDDFAVAKTEVSTTVASHSEHALGMEGR
Ga0310686_1000931447	3300031708	Soil	MKTINGFAALSLSLILGLVPFALIAVDDCVVAKAEVSTTVAAHQEHALGMEGR
Ga0310686_1011920263	3300031708	Soil	MKTIHSFAALSLSLILGLAPFALIAMDDFVVAKAEVSTTVAANSVHALGVEGR
Ga0310686_1138330694	3300031708	Soil	YNHSENHMKTLNGFAALSLSLILGLAPFALIAVNDLVVAKAEVSTTVAAHGEHALGMEGR
Ga0307476_100028336	3300031715	Hardwood Forest Soil	MKTLNGFAALSLSLILGLAPFALIAVNDLVVAKAEVSTTVAAHAEHALGMEGR
Ga0307476_103323341	3300031715	Hardwood Forest Soil	VYNYLEKHMKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSSTVAAGPEHALGMEG
Ga0307476_111730412	3300031715	Hardwood Forest Soil	MKTLNSFAALSLSLILGLVPFALIAVDDFVVATAKISTTVAPNSEHALGMEGR
Ga0307474_100002556	3300031718	Hardwood Forest Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTSAAANSVHALGVEGR
Ga0307474_1000033217	3300031718	Hardwood Forest Soil	MKTIQGLAALPLSLILGLVPFALIAVDDFVVAKAEVSTTVTAGPEHALGMEGR
Ga0307474_100081842	3300031718	Hardwood Forest Soil	MKTIHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTSVAANSVHALGTEGR
Ga0307478_100048046	3300031823	Hardwood Forest Soil	MKTVHGFAALSLSLILGLVPFALIAVDDFVVAKAEVSTPVAANSVHALGVEGR
Ga0348332_118549401	3300032515	Plant Litter	HSENHMKTLNGFAALSLSLILGLAPFALIAANDLVVAKAEVSTTVAAHAEHALGMEGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082956

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences