Metagenome / Metatranscriptome Family F082983

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082983
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	84 residues
Representative Sequence	LGMNLEEIREFLTLETRLDELRATYRATKGATTKKARAEQKATLEEALVLNESLAEQISAKLARMDGFRAKLAHDAARCRELLAELE
Number of Associated Samples	92
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.96 %
% of genes near scaffold ends (potentially truncated)	89.38 %
% of genes from short scaffolds (< 2000 bps)	92.04 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.717 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (22.124 % of family members)
Environment Ontology (ENVO)	Unclassified (22.124 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.947 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.96% β-sheet: 0.00% Coil/Unstructured: 33.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.47.2.1: t-snare proteins	d1ez3a_	1ez3	0.77029
c.37.1.0: automated matches	d6qpqa1	6qpq	0.75063
a.238.1.1: BAR domain	d2q13a1	2q13	0.74106
f.37.1.1: ABC transporter transmembrane region	d3g60a1	3g60	0.73369
a.7.1.1: Spectrin repeat	d2spca_	2spc	0.72604

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04993	TfoX_N	22.12
PF12680	SnoaL_2	14.16
PF07858	LEH	7.96
PF07969	Amidohydro_3	3.54
PF00376	MerR	1.77
PF13411	MerR_1	1.77
PF06737	Transglycosylas	1.77
PF00106	adh_short	0.88
PF05532	CsbD	0.88
PF02353	CMAS	0.88
PF00180	Iso_dh	0.88
PF00583	Acetyltransf_1	0.88
PF03706	LPG_synthase_TM	0.88
PF13515	FUSC_2	0.88
PF02739	5_3_exonuc_N	0.88
PF00578	AhpC-TSA	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	22.12
COG3631	Ketosteroid isomerase-related protein	General function prediction only [R]	7.96
COG4308	Limonene-1,2-epoxide hydrolase LimA/EphG	Secondary metabolites biosynthesis, transport and catabolism [Q]	7.96
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.88
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.88
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.88
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.88
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.72 %
Unclassified	root	N/A	36.28 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.64 %
Unclassified	root	N/A	36.28 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	53.10 %
Unclassified	root	N/A	36.28 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.39 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.77 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.28 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.65 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.77 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.77 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	1.77 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Gordoniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1.77 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.88 %
Gordonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1.77 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.88 %
Gordonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.65 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1.77 %
Pseudonocardia sp. CNS-004	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. CNS-004	0.88 %
Gordonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia	0.88 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.88 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001408\|JGI20206J14855_1039883	Not Available	693	Open in IMG/M
3300004092\|Ga0062389_101587743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	837	Open in IMG/M
3300004092\|Ga0062389_103187070	Not Available	614	Open in IMG/M
3300004092\|Ga0062389_104300621	Not Available	536	Open in IMG/M
3300005591\|Ga0070761_10549979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	715	Open in IMG/M
3300006059\|Ga0075017_100817487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	721	Open in IMG/M
3300006102\|Ga0075015_100499894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300006176\|Ga0070765_100480130	Not Available	1167	Open in IMG/M
3300006176\|Ga0070765_102221547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300006642\|Ga0075521_10003413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5603	Open in IMG/M
3300006795\|Ga0075520_1225976	Not Available	785	Open in IMG/M
3300009672\|Ga0116215_1092139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1359	Open in IMG/M
3300009824\|Ga0116219_10437771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	727	Open in IMG/M
3300010379\|Ga0136449_103766161	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300010396\|Ga0134126_11132029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300014165\|Ga0181523_10172728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1262	Open in IMG/M
3300014165\|Ga0181523_10370838	Not Available	800	Open in IMG/M
3300014165\|Ga0181523_10688238	Not Available	559	Open in IMG/M
3300014167\|Ga0181528_10450158	Not Available	705	Open in IMG/M
3300014493\|Ga0182016_10062741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2807	Open in IMG/M
3300014495\|Ga0182015_10117618	Not Available	1829	Open in IMG/M
3300014495\|Ga0182015_10765358	Not Available	607	Open in IMG/M
3300014501\|Ga0182024_11708039	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300014657\|Ga0181522_11006875	Not Available	516	Open in IMG/M
3300014658\|Ga0181519_10585401	Not Available	688	Open in IMG/M
3300014838\|Ga0182030_10229852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2157	Open in IMG/M
3300016404\|Ga0182037_11490276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	600	Open in IMG/M
3300016422\|Ga0182039_10185435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1647	Open in IMG/M
3300016445\|Ga0182038_12042003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300017821\|Ga0187812_1309122	Not Available	502	Open in IMG/M
3300017946\|Ga0187879_10715257	Not Available	558	Open in IMG/M
3300017972\|Ga0187781_11022316	Not Available	605	Open in IMG/M
3300017973\|Ga0187780_11185268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	559	Open in IMG/M
3300017974\|Ga0187777_10711494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300018043\|Ga0187887_10762516	Not Available	572	Open in IMG/M
3300018062\|Ga0187784_10727694	Not Available	793	Open in IMG/M
3300019786\|Ga0182025_1312797	Not Available	1661	Open in IMG/M
3300019786\|Ga0182025_1355747	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300019787\|Ga0182031_1545809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1731	Open in IMG/M
3300020021\|Ga0193726_1334911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300021402\|Ga0210385_11108253	Not Available	608	Open in IMG/M
3300021407\|Ga0210383_11407920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300025634\|Ga0208589_1016828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2126	Open in IMG/M
3300026879\|Ga0207763_1023480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	596	Open in IMG/M
3300027003\|Ga0207722_1031157	Not Available	580	Open in IMG/M
3300027330\|Ga0207777_1087925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300027570\|Ga0208043_1121868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300027574\|Ga0208982_1091481	Not Available	617	Open in IMG/M
3300027662\|Ga0208565_1052975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1297	Open in IMG/M
3300027696\|Ga0208696_1145935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300027889\|Ga0209380_10217067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1123	Open in IMG/M
3300027895\|Ga0209624_10977619	All Organisms → cellular organisms → Bacteria → Terrabacteria group	549	Open in IMG/M
3300027908\|Ga0209006_10246205	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300027908\|Ga0209006_11518262	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	506	Open in IMG/M
3300028574\|Ga0302153_10058543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1294	Open in IMG/M
3300028742\|Ga0302220_10336026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
3300028762\|Ga0302202_10218084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300028773\|Ga0302234_10480098	Not Available	531	Open in IMG/M
3300028783\|Ga0302279_10004891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15357	Open in IMG/M
3300028877\|Ga0302235_10159029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1006	Open in IMG/M
3300028879\|Ga0302229_10527892	Not Available	520	Open in IMG/M
3300028906\|Ga0308309_10767707	Not Available	838	Open in IMG/M
3300028906\|Ga0308309_11004463	Not Available	723	Open in IMG/M
3300029636\|Ga0222749_10374269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	750	Open in IMG/M
3300029907\|Ga0311329_10352115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1047	Open in IMG/M
3300029908\|Ga0311341_10428833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	762	Open in IMG/M
3300029910\|Ga0311369_11459829	All Organisms → cellular organisms → Bacteria → Terrabacteria group	515	Open in IMG/M
3300029913\|Ga0311362_10025818	All Organisms → cellular organisms → Bacteria	9923	Open in IMG/M
3300029951\|Ga0311371_10429762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia	1780	Open in IMG/M
3300029956\|Ga0302150_10006222	All Organisms → cellular organisms → Bacteria	4999	Open in IMG/M
3300029999\|Ga0311339_10801323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	907	Open in IMG/M
3300029999\|Ga0311339_11979381	Not Available	500	Open in IMG/M
3300030007\|Ga0311338_10493124	Not Available	1287	Open in IMG/M
3300030520\|Ga0311372_11457536	Not Available	848	Open in IMG/M
3300030520\|Ga0311372_12320221	Not Available	612	Open in IMG/M
3300030524\|Ga0311357_11552862	Not Available	558	Open in IMG/M
3300030580\|Ga0311355_10244156	Not Available	1843	Open in IMG/M
3300030580\|Ga0311355_10584910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1056	Open in IMG/M
3300030617\|Ga0311356_10081701	Not Available	3411	Open in IMG/M
3300030618\|Ga0311354_10620363	Not Available	1047	Open in IMG/M
3300030618\|Ga0311354_10735701	Not Available	939	Open in IMG/M
3300030618\|Ga0311354_10780843	Not Available	904	Open in IMG/M
3300030688\|Ga0311345_10515274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300030688\|Ga0311345_11167138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300030739\|Ga0302311_10979130	All Organisms → cellular organisms → Bacteria → Terrabacteria group	536	Open in IMG/M
3300030906\|Ga0302314_11680926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300031090\|Ga0265760_10153982	Not Available	755	Open in IMG/M
3300031234\|Ga0302325_12104141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300031234\|Ga0302325_12726638	Not Available	582	Open in IMG/M
3300031236\|Ga0302324_103394147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. CNS-004	519	Open in IMG/M
3300031525\|Ga0302326_12199993	Not Available	704	Open in IMG/M
3300031525\|Ga0302326_12235239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300031546\|Ga0318538_10631567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300031549\|Ga0318571_10022587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1665	Open in IMG/M
3300031549\|Ga0318571_10444814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300031680\|Ga0318574_10911314	Not Available	515	Open in IMG/M
3300031708\|Ga0310686_111369719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300031708\|Ga0310686_118230936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	782	Open in IMG/M
3300031718\|Ga0307474_10100901	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
3300031719\|Ga0306917_11103940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300031769\|Ga0318526_10273374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300031796\|Ga0318576_10504667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300031859\|Ga0318527_10306060	All Organisms → cellular organisms → Bacteria → Terrabacteria group	677	Open in IMG/M
3300031890\|Ga0306925_10851212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	942	Open in IMG/M
3300031893\|Ga0318536_10356877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300031893\|Ga0318536_10582647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300031910\|Ga0306923_12390289	Not Available	524	Open in IMG/M
3300031962\|Ga0307479_11928239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	541	Open in IMG/M
3300032261\|Ga0306920_102878918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300032898\|Ga0335072_10901531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	828	Open in IMG/M
3300032898\|Ga0335072_11679374	Not Available	531	Open in IMG/M
3300033289\|Ga0310914_11316740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300034282\|Ga0370492_0176398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.61%
Aquatic	Environmental → Aquatic	12.39%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.52%
Peat	Environmental → Terrestrial → Peat	30.09%
Freshwater	Environmental → Aquatic → Freshwater	10.62%
Sediment	Environmental → Aquatic → Sediment	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	30.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.27%
Loam	Environmental → Terrestrial → Soil → Loam	11.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	30.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.73%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.19%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	22.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.50%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.19%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.31%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.65%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.65%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.77%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001408	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026879	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 50 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027574	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029956	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_2	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20206J14855_10398832	3300001408	Arctic Peat Soil	LREVLGMNLDEIKEFLSFETRLDELRSTYRATKGSTTKKARAEQKETLREALELNETLAEQLNAKLARMDSFRAKLAGDARRCRDLLAELD*
Ga0062389_1015877432	3300004092	Bog Forest Soil	VLGMNLDEIKAFLSFETRLDQLRTTYRATKDSSTKEARAEQKATLLEALELNESLAEKLKAKIARMDSFRSKVAGDAQRCRELLATLD*
Ga0062389_1031870701	3300004092	Bog Forest Soil	FLSFETRLDVLRADYRAKKDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEDAPAAPS*
Ga0062389_1043006211	3300004092	Bog Forest Soil	LREVLGMNLDEIREFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRAKLRGDAQRCRELLTELE*
Ga0070761_105499792	3300005591	Soil	LHLKRILELREVLGMNLEEIKEFLSFEGRLDQLRADYHAAKGATTKRAIREQKATLSEALELNEALAEQLNAKLARMDSFRAKLAADAQRCRDLLAELD*
Ga0075017_1008174871	3300006059	Watersheds	RILELREVLGMNLDEIREFLSLETRLDELRATYRATKGATTKKARAEQKATLQEALVLNESLAQQIGAKLERMDGFRAKLVSDARRCKELLADLE*
Ga0075015_1004998941	3300006102	Watersheds	SYRASKGATSKKAMAQQKATLQEALVLNESLAEQISAKLARMEGFRAKLLSDAGRCRQLLGELE*
Ga0070765_1004801303	3300006176	Soil	LSFETRLDELRATYRAAKGSTTKKARAEQKETLREALELNETLAEQLNAKLARMDSFRAKLAGDARRCRDLLAELD*
Ga0070765_1022215472	3300006176	Soil	REFLALETRLDELRASYRATRGATTKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRAKLRSDAERCRELLTELE*
Ga0075521_100034139	3300006642	Arctic Peat Soil	FETRLDELRTTYRATKVSTTKGARAEQRATLREALELNESLAEQLNVKLARMDSFRAKVAGDAQRCRELLAKLD*
Ga0075520_12259761	3300006795	Arctic Peat Soil	SFETRLDELRTTYRATKVSTTKGARAEQRATLREALELNESLAEQLNVKLARMDSFRAKVAGDAQRCRELLAKLD*
Ga0116215_10921394	3300009672	Peatlands Soil	LELREVLGMNLDEIREFLSLETRLDELRATYRATKGATTKKARAEQKATLQEALVLNESLAQQIGAKLVRMDGFRAKLVGDAQRCRELLSELE*
Ga0116219_104377711	3300009824	Peatlands Soil	LGMNLEEIREFLSLETRLEELRATYRATKGATSKKARAEQKATLQEALVLNESLAQQIGAKLARMDGFRAKLVGDARRCRELLSELE*
Ga0136449_1037661611	3300010379	Peatlands Soil	NRILELREVLGMNLDEIKGFLSFETRLDELRTTYRATKASSSEGARAEQRATLLEALELNESLAEKLTSKIARMDSFREKVAGDARRCRELLAALD*
Ga0134126_111320292	3300010396	Terrestrial Soil	MNLDEIREFLTLETRLDEVKATYRANKGDTTKKARTVQKAMLREAAELNESLAKQLTDKLARMEAFQSKLAGDAKRCREILAEME*
Ga0181523_101727281	3300014165	Bog	DEIREFLSLETRLDQLRASYRASKGATSKKARSEQKATLQEAMELNESLAQQINAKLARMDGFRAKLLSDAQRCRELLGELG*
Ga0181523_103708381	3300014165	Bog	DEIREFLSLETRLDQLRASYRASKGATSKKARSEQKATLQEAMELNESLAQQINAKLARMDGFRVKLLSDAQRCRELLGELE*
Ga0181523_106882382	3300014165	Bog	ETRLDQLRASYRASEGATTKKARAEQKATLQEAMELNESLARQINAKLARMDGFRAKLLSDAQRCRELLGELE*
Ga0181528_104501582	3300014167	Bog	RILELREVLGMNLDEIKEFLSFETRLDALRTDYRAKKDATSPQARDAQKATLREALELIESLAEQLNAKLARMDAFRSKLTGDAQRCRDLLGELDAVPTTTT*
Ga0182016_100627414	3300014493	Bog	MNLDEIKEFPSFETRLEVLRTDGRATKDAKDATTPRAHAEQKATLREALELIESLAEQLNAKLARMDSFRATLTDDAKRCRVLLSELDDAPAAPS*
Ga0182015_101176182	3300014495	Palsa	FLSFETRLDVLRADYRAKKDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPI*
Ga0182015_107653581	3300014495	Palsa	KEFLSFEMRLDILRSDYRAKKDATTARARDEQKATLQEALELIESLAEQLNAKLARMDRFRAKLTGDAQRCRDLLDELEDASVERR*
Ga0182024_117080391	3300014501	Permafrost	RILELREVLGMNLDEIKAFLSFETRLDELRTTYRATKASSTAGARAEQKATLLEALELNESLAEKLKAKIARMDTFRAKVAGDAQRCRELLATLD*
Ga0181522_110068752	3300014657	Bog	LGMNLDEIREFLALETRLEELRASYRATKGVPTKKARQEQKATLEEALVLNESLAGQLSAKLARMDAFRAKLEGDARRCRELLDELD*
Ga0181519_105854011	3300014658	Bog	VLGMNLDEIREFLSVQSRLAALKATYRATKESTTNKPRSEQKATLLEALELNQTLAEQLDAKLARMDAFRAKVTGDAKRCRELLSALD*
Ga0182030_102298523	3300014838	Bog	LDELRASYRATKDATTKKALAEQKATLEEALVLNDSLAEQISAKLTRMDGFRAKLRSDAQRCRELLTELD*
Ga0182037_114902761	3300016404	Soil	NLDEIREFLALETRLDELRVTYRATKGERTAKARAEQRATLEEAMRLNESLAEQIGAKLSRMEGFRAKLEHDAQRCRELLGELG
Ga0182039_101854351	3300016422	Soil	MNLDEIREFLTLETRLDEVKATYRANKGDTTTKARAVQKAMLQEAADLNESLAKQLTDKLARMEAFQTKLAGDARRCREILAEME
Ga0182038_120420031	3300016445	Soil	ETRLDELRVTYRATKGKRTAKALAEQRATLEEAMRLNESLAEQISTKLARMEGFRSKLEHDAQRCRELLADLG
Ga0187812_13091221	3300017821	Freshwater Sediment	IREFLTLETRLDELRASYRATKGATTKKGRAEQKATLEEALVLNESLAQQISAKLARMDGFRTKLLSDARRCRELLAELE
Ga0187879_107152572	3300017946	Peatland	ILELREVLGMNLEEIREFLSLETRLDQLRASYRASEGATTKKARAEQKATLQEAMELNESLARQINAKLARMDGFRAKLLSDAQRCRELLGELE
Ga0187781_110223162	3300017972	Tropical Peatland	ETRLDELRASYRATKGATSKKAKAAQKATLEEALVLNESLAEQITVKLARMDGFRAKLVHDAGRCRELLAELE
Ga0187780_111852681	3300017973	Tropical Peatland	LGMNLEEIREFLTLETRLDELRATYRATKGATTKKARAEQKATLEEALVLNESLAEQISAKLARMDGFRAKLAHDAARCRELLAELE
Ga0187777_107114942	3300017974	Tropical Peatland	IEEVGRFVPKMSRLDELRATYRATKGATTKKARAGQKATLQEALVLNESLAEQISVKLARMDGFRAQLARDAARCRELLAELE
Ga0187887_107625162	3300018043	Peatland	LETRLDQLRASYRASEGATTKKARAEQKATLQEAMELNESLARQINAKLARMDGFRAKLLSDAQRCRELLGELE
Ga0187784_107276941	3300018062	Tropical Peatland	LDEIREFLALETRLDELRASYRAAKGATSKRARAEQKATLQEALMLNESLAEQIRAKLARMDAFRAKLERDAGRCRELLAQLAELP
Ga0182025_13127972	3300019786	Permafrost	MNLEEIKEFLSFEGRLDILRSTYRATVSATTAQARAEQRSTLQEALELIASLADRLNMKLTRMEGFRSKLTDDAERCRGLLAELDDAPVPPS
Ga0182025_13557474	3300019786	Permafrost	MNLDDIKEFLSFEMRLDALRSDYRAKKDGTTPQARAEQKETLREVLELLESLADQLNAKLARMDSFRAKLTGDAQRCRDFSMSWETSRRSTR
Ga0182031_15458092	3300019787	Bog	MNLEEIREFLSFETRLDELRTTYRATKVSTTKGARAEQRATLREALELNESLAEQLNVKLARMDSFRAKVAGDAQRCRELLATLD
Ga0193726_13349112	3300020021	Soil	SFEGRLDELREAYRARKGATSKRAIAEQRATLSEALELNETLATQLNAKLARMDTFRAKLSADAQRCRELLTELD
Ga0210385_111082532	3300021402	Soil	RYTLEDLADLQRILELREVLGMNLEEIKDFLALETRLDELRVSYRARKGATTKKALAEQRATLEEALVLNESLAEQISTKLARMDGFRAKLRSDAQRCRELLTELG
Ga0210383_114079202	3300021407	Soil	FLARETRLDELRASYRATKDATSEKALADQKATLQEALVLNESLAEQITAKLARMDGFRSKLRSDAQRCRELLTELE
Ga0208589_10168282	3300025634	Arctic Peat Soil	MNLDEIKEFLSFETRLDELRSTYRATKGSTTKKARAEQKETLREALELNETLAEQLNAKLARMDSFRAKLAGDARRCRDLLAELD
Ga0207763_10234802	3300026879	Tropical Forest Soil	TYRATKGERTAKARAEQKATLEEAMRLNESLAEQISAKLSRMEGFRAKLEHDAQRCRELLDELG
Ga0207722_10311572	3300027003	Tropical Forest Soil	YRATKGERTAKARAEQKATLEEAMRLNESLAEQISAKLSRMEGFRAKLEHDAQRCRELLDELG
Ga0207777_10879252	3300027330	Tropical Forest Soil	NLDEIREFLALETRLDEVKATYRANKGDTTKHARAVQKAMLQEAADLNESLAKQLTDKLSRMEAFQTKLAGDAKRCREILAEME
Ga0208043_11218682	3300027570	Peatlands Soil	LGMNLDEIREFLSLETRLDQLRASYRASEGATSKKARAEQKATLEEALVLNESLAQQISAKLARMDGFRTKLLGDARRCRELLAELD
Ga0208982_10914811	3300027574	Forest Soil	RDELRASYRATKDATSKKALAEQKATLQEALVLNESLAEQISAKLARMDGFRSKLRSDAQRCRELLTELD
Ga0208565_10529754	3300027662	Peatlands Soil	TRLDELRATYRATKGATTKKARAEQKATLQEALVLNESLAQQIGAKLVRMDGFRAKLVGDAQRCRELLSELE
Ga0208696_11459352	3300027696	Peatlands Soil	LELREVLGMNLDEIREFLALETRLDELRASYRAAKGATTKKARAEQKATLEEALVLNESLAQQISAKLARMDGFRTKLLSDARRCRELLAELD
Ga0209380_102170673	3300027889	Soil	IKEFLSFETRLDELRTTYRATKGSTTKKARAEQKETLREALELNETLAEQLNAKLARMDSFRAKLAGDARRCRDLLAELD
Ga0209624_109776192	3300027895	Forest Soil	REVLGMNLDEIREFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRAKLRSDAQRCRELLTELE
Ga0209006_102462051	3300027908	Forest Soil	NRILELREVLGLNLDEIKEFLSFETRLDELRATYRATKGSTTKKARAEQKETLREALELNETLAEQLNAKLARMDSFRAKLAGDARRCRDLLSELD
Ga0209006_115182622	3300027908	Forest Soil	VIGMNLEEIREFLALETRLDELKATYRANKGDTTKKARAVQKATLQEAAELNESLAKQLTDKLARMHAFQTKLAGDAQRCREILAEMQ
Ga0302153_100585433	3300028574	Bog	TRLDELRATYRATKDVTSRKALVEQKATLQEALVLNDSLAEQISAKLARMDGFRAKLRSDAQRCRELLAELD
Ga0302220_103360262	3300028742	Palsa	EVLGMNLDEIREFLALDTRLDELRASYRARKGATSTKALAEQRATLQEALVLNESLAEQISVKLARMGGFRAKLRSDAKRCRELLTELE
Ga0302202_102180841	3300028762	Bog	LDELRATYRATKDVTSRKALVEQKATLQEALVLNDSLAEQISAKLTRMDGFRAKLRSDAQRCRELLAELD
Ga0302234_104800982	3300028773	Palsa	NLDEIKEFLSFETRLDVLRADYRAKKDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPS
Ga0302279_1000489116	3300028783	Bog	YRATKDVTSRKALVEQKATLQEALVLNDSLAEQISAKLTRMDGFRAKLRSDAQRCRELLAELD
Ga0302235_101590291	3300028877	Palsa	ILELREVLGMNLDEIREFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRSKLRSDAQRCRELLTELE
Ga0302229_105278921	3300028879	Palsa	DLTQLGRILELREVLGMNLDEIKEFLSFETRLDVLRADYRAKKDATTPRALDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPS
Ga0308309_107677072	3300028906	Soil	MNLDEIKEFLSYETRLDVLRADYRAKRDATTPRARDEQRATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPT
Ga0308309_110044631	3300028906	Soil	YRATKDATSRKALDEQKATLQEALVLNESLAEQISAKLARMDGFRSKLRNDAQRCRELLTELE
Ga0222749_103742692	3300029636	Soil	DEIREFLTLETRLDEVKATYRANKGDTTKKARAVQKAMLQEAAELNESLAKQLTDKLARMEAFQTKLAGDAKRCREILAEME
Ga0311329_103521151	3300029907	Bog	NLDEIREFLALETRLDELRASYRATKDATSKKALAEQKATLEEAAVLNESLAEQISAKLARMDGFRAKLRSDAQRCRELLTELD
Ga0311341_104288332	3300029908	Bog	GMNLDEIREFLALETRLDELRATYRATKDVTSKKALAEQKATLQEALVLNDSLAEQISAKLARMDGFRAKLRSDAQRCRELLAELD
Ga0311369_114598291	3300029910	Palsa	VLGMNLDEIRDFLALEARLDELRASYHAARNATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRSKLRSDAQRCRELLTELE
Ga0311362_1002581811	3300029913	Bog	LETRLDELRATYRATKDVTSRKALVEQKATLQEALVLNDSLAEQISAKLTRMDGFRAKLRSDAQRCRELLAELD
Ga0311371_104297621	3300029951	Palsa	TPADLAHLERILELREVLGMNLDDIREFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRSKLRSDAQRCRELLTELE
Ga0302150_100062224	3300029956	Bog	DELRATYRATKDVTSKKALAEQKATLQEALVLNDSLAEQISAKLARMDGFRAKLRSDAQRCRELLAELD
Ga0311339_108013231	3300029999	Palsa	DFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRAKLRSDAQRCRELLTELE
Ga0311339_119793811	3300029999	Palsa	ETRLDVLRADYRAKQDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELGDAPAAPS
Ga0311338_104931242	3300030007	Palsa	MNLDEIKEFLSFETRLDVLRADYRAKKDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPS
Ga0311372_114575362	3300030520	Palsa	NLDEIKEFLSFETRLDVLRTDYRAKKDATTPDARDEQKATLREALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLSELEHAPAARG
Ga0311372_123202211	3300030520	Palsa	IKEFLNFEARLDELRTSYQATKGVTTQRARAKQQATLQEALLLNETLAEQLNAKLMRMDDFRAKLAGDAARCRQLLSELD
Ga0311357_115528622	3300030524	Palsa	LELREVLGMNLDEIKEFLSFETRLDVLRADYRAKKDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPS
Ga0311355_102441563	3300030580	Palsa	SDLTQLGRILELREVLGMNLDEIKEFLSFETRLDVLRADYRAKKDATTPRALDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPS
Ga0311355_105849101	3300030580	Palsa	RASYRARKGATSKKALGEQKTTLQEALVLNESLAEQISAKLARMDGFRAKLRNDAQRCRELLAELE
Ga0311356_100817014	3300030617	Palsa	MNLDEIREFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRSKLRSDAQRCRELLTELE
Ga0311354_106203632	3300030618	Palsa	EVLGMNLDEIKEFLSFETRLDVLRADYRAKKDATTPRALDQQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELEGAPAAPS
Ga0311354_107357012	3300030618	Palsa	VLRRDYRAKKDATTPRSRDEQKATLEEALELIESLAQQLNAKLARMDTFRTKLTGDAQRCRDLLRELEDTPTEQS
Ga0311354_107808431	3300030618	Palsa	QLRRILELREVLGMNLDDIKEFLSFETRLDVLRTDYRSKKDATSPEARDDQKATLREALELIEMLAEQLNAKLARMDVFRAKLAGDAQRCRDLLGEFEDKSTTPS
Ga0311345_105152743	3300030688	Bog	LRATYRATKDVTSRKALVEQKATLQEALVLNDSLAEQISAKLTRMDGFRAKLRSDAQRCRELLAELD
Ga0311345_111671381	3300030688	Bog	LNRILELREVLGMNLDEIKEFLSFETRLDELRATYHASKGATTKKARAEQKATLHEALKLNESLAEQLNAKLQRMDDFRAKLAGNAQKCRDLIAELE
Ga0302311_109791301	3300030739	Palsa	DEIREFLALETRLDELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRSKLRSDAQRCRELLTELE
Ga0302314_116809262	3300030906	Palsa	LERILELREVLGMNLDEIKDFLSLETRLDELRATYRATKGVSTPKAKAEQKATLEEALVLNESLAEQIGTKLARMDAFRTKLANDALRCRELLDELD
Ga0265760_101539821	3300031090	Soil	QLNRILELREVLGMNLDEIKEFLSFETRLDELRTTYRATKGSTTKKARAEQKETLREALELNETLAEQLNAKLARMDSFRAKLAGDARRCRDLLAELD
Ga0302325_121041411	3300031234	Palsa	NLDEIREFLALETRLDELRASYRAAKGATSKRALAEQKATLQEALVLNESLAEQISAKLTRMDGFRAKLTSDAQRCRELLTELD
Ga0302325_127266381	3300031234	Palsa	MNLDDIKEFLSFETRLDVLRTDYRSKKDATSPEARDDQKATLREALELIEMLAEQLNAKLARMDVFRAKLAGDAQRCRDLLGEFEDKSTTPS
Ga0302324_1033941471	3300031236	Palsa	LRATYRATKGVSTPKAKAEQKATLEEALVLNESLAEQIGTKLARMDAFRTKLANDALRCRELLDELD
Ga0302326_121999931	3300031525	Palsa	IKEFLSFETRLDVLRADYRAKQDATTPRARDEQKATLQEALELIESLAEQLNAKLARMDSFRAKLTGDAQRCRDLLNELGDAPVAPS
Ga0302326_122352392	3300031525	Palsa	DELRASYRATRGATSKKALAEQKATLQEALVLNESLAEQISAKLTRMDGFRAKLRSDAQRCRELLTELE
Ga0318538_106315671	3300031546	Soil	VTYRATKGKRTAKALAEQRATLEEAMRLNESLAEQISTKLARMEGFRSKLEHDAQRCRELLADLG
Ga0318571_100225874	3300031549	Soil	TYRATKGERTAKARAEQRATLEEAMRLNESLAEQIGAKLSRMEGFRAKLEHDAQRCRELLDELG
Ga0318571_104448141	3300031549	Soil	LELREVLGMNLDEIREFLTLETRLDEVKATYRANKGDTTTKARAVQKAMLQEAADLNESLAKQLTDKLARMEAFQTKLAGDARRCREILAEME
Ga0318574_109113142	3300031680	Soil	VTYRATKGKRTAKALAEQRATLEEAMRLNESLAEQISTKLARMEGFRSKLEHDAQRCRE
Ga0310686_1113697192	3300031708	Soil	MNLDEIREFLALETRLDELKATYRANKGDTTKQARAVQKETLQEVAELNETLAKQLTDKLERMHAFQTKLAGDAQRCREILAEME
Ga0310686_1182309362	3300031708	Soil	REVLGMNLDEIREFLALETRLDEVRATYRANKGETTKKARAVQKAMLQEAAELNESLAKQLSDKLTRMEAFQTKLAGDAKRCREILAEME
Ga0307474_101009011	3300031718	Hardwood Forest Soil	LTLETRLDEVKATYRANKGDTTTKARAVQKAMLEEAATLNESLAKQLTDKLARMEAFQTKLAGDAERCREILAEME
Ga0306917_111039402	3300031719	Soil	EFLALETRLDELRVAYRATRGATSEKARAAQKATLQEALELNESLAKQLADKLARMDAFRAKLAGDARRCRELLSELD
Ga0318526_102733742	3300031769	Soil	ALETRLDELRVTYRATKGERTAKARAEQKATLEEAMRLNESLAEQISAKLSRMEGFRAKLEHDAQRCRELLDELG
Ga0318576_105046672	3300031796	Soil	LSSGRKRGGCRPRTGGPEFLALETRLDELRVTYRATKGERTAKARAEQRATLEEAMRLNESLAEQIGAKLSRMEGFRAKLEHDAQRCRELLDELG
Ga0318527_103060602	3300031859	Soil	IREFLALETRLDELRVAYRATSGATSKKARAAQKATLQEALELNESLAKQLADKLARMDAFRAKLAGDARRCRELLDELD
Ga0306925_108512123	3300031890	Soil	IREFLALETRLDELRVTYRATKGERTAKARAEQRATLEEAMRLNESLAEQIGAKLSRMEGFRAKLEHDAQRCRELLDELG
Ga0318536_103568772	3300031893	Soil	EFLALETRLDELRVTYRATKGKRTAKALAEQRATLEEAMRLNESLAEQISTKLARMEGFRSKLEHDAQRCRELLADLG
Ga0318536_105826472	3300031893	Soil	LDELRATYRATKGVGTKKARAEQKATLEEALELNETLAQQLSAKLARMDAFRAKLVHDAQRCRELLAELD
Ga0306923_123902892	3300031910	Soil	ILELREVLGMNLDEIKEFLSFETRLDELRDTYRATKGVGTRKARVEQKATLTEALELNETLAQQLSTKLARMDAFRARLAHDAQRCRELLAELD
Ga0307479_119282392	3300031962	Hardwood Forest Soil	TLETRLDEVRATYRANKGETTKKARAVQKAMLQEAAELNESLAKQLADKLARMEAFQAKLAGDAKRCREILAEME
Ga0306920_1028789182	3300032261	Soil	LERILELREVLGMNLDEIKEFLSFETRLDELRASYRATEGVGTKKARAEQKATLTEALELNETLAQQLSTKLARMDAFRAKLAHNAERCRELLADLD
Ga0335072_109015311	3300032898	Soil	EIREFLSLETRLDELRASYRARKGATSTKARAEQQETLREAMVLNESLAQQISTKLARMDEFRAKLLHDARRCRELLAELD
Ga0335072_116793741	3300032898	Soil	LELREVLGMNLDEIREFLSLETRLDELRATYRATKGSTTKKARAEQKATLQEAMVLNESLAEQISTKLERMDGFRAKLRHDAQRCRELLAELD
Ga0310914_113167401	3300033289	Soil	VLGMNLDEIKEFLAFETRLDELRATYRATKGVGTKKARAEQKATLEEALELNETLAQQLSAKLARMDAFRAKLVHDAQRCRELLAELD
Ga0370492_0176398_15_272	3300034282	Untreated Peat Soil	MNLDEIREFLALETRLDELRATYRATKDVTSKKALAEQKATLQEALVLNDSLAEQISAKLARMDGFRAKLRSDAQRCRELLAELD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082983

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences