Metagenome / Metatranscriptome Family F083002

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083002
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	45 residues
Representative Sequence	LGRGVLASGEFARHCRDEFTALGEFTLPGFSAAQLVFGLEDEVPVR
Number of Associated Samples	90
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	90.27 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.301 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (55.752 % of family members)
Environment Ontology (ENVO)	Unclassified (56.637 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.673 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.11% β-sheet: 20.27% Coil/Unstructured: 71.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13767	DUF4168	5.31
PF13191	AAA_16	1.77
PF00496	SBP_bac_5	1.77
PF01177	Asp_Glu_race	1.77
PF00034	Cytochrom_C	1.77
PF01042	Ribonuc_L-PSP	1.77
PF01243	Putative_PNPOx	1.77
PF05685	Uma2	1.77
PF00583	Acetyltransf_1	0.88
PF00903	Glyoxalase	0.88
PF12625	Arabinose_bd	0.88
PF07386	DUF1499	0.88
PF00535	Glycos_transf_2	0.88
PF01227	GTP_cyclohydroI	0.88
PF02668	TauD	0.88
PF00252	Ribosomal_L16	0.88
PF13374	TPR_10	0.88
PF07883	Cupin_2	0.88
PF01380	SIS	0.88
PF00536	SAM_1	0.88
PF02515	CoA_transf_3	0.88
PF12872	OST-HTH	0.88
PF07885	Ion_trans_2	0.88
PF01925	TauE	0.88
PF07452	CHRD	0.88
PF00962	A_deaminase	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.77
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	1.77
COG0197	Ribosomal protein L16/L10AE	Translation, ribosomal structure and biogenesis [J]	0.88
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.88
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.88
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	0.88
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG4446	Uncharacterized conserved protein, DUF1499 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.83 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.40 %
Unclassified	root	N/A	17.70 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.58 %
Unclassified	root	N/A	17.70 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.65 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.42 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.65 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.65 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.77 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	1.77 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.65 %
Cupriavidus basilensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	1.77 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.77 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.65 %
Cupriavidus basilensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	1.77 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.77 %
Afipia sp. Root123D2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10041480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1920	Open in IMG/M
3300005332\|Ga0066388_106964057	Not Available	569	Open in IMG/M
3300005434\|Ga0070709_11630240	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005764\|Ga0066903_104854827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300006057\|Ga0075026_100236520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	975	Open in IMG/M
3300006176\|Ga0070765_100056376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3232	Open in IMG/M
3300010048\|Ga0126373_11360448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	776	Open in IMG/M
3300010359\|Ga0126376_10805588	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300010360\|Ga0126372_10886636	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300010366\|Ga0126379_13597753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300010376\|Ga0126381_100774022	All Organisms → cellular organisms → Bacteria → Proteobacteria	1377	Open in IMG/M
3300010376\|Ga0126381_102010128	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300012096\|Ga0137389_10810852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300012918\|Ga0137396_10196609	All Organisms → cellular organisms → Bacteria	1482	Open in IMG/M
3300012948\|Ga0126375_10499808	Not Available	906	Open in IMG/M
3300016270\|Ga0182036_11267698	Not Available	614	Open in IMG/M
3300016294\|Ga0182041_10736115	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300016294\|Ga0182041_11264571	Not Available	674	Open in IMG/M
3300016319\|Ga0182033_10040372	All Organisms → cellular organisms → Bacteria	3073	Open in IMG/M
3300016319\|Ga0182033_11468355	Not Available	615	Open in IMG/M
3300016371\|Ga0182034_12048234	Not Available	505	Open in IMG/M
3300016387\|Ga0182040_10155531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1635	Open in IMG/M
3300016387\|Ga0182040_11108426	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300016387\|Ga0182040_11293148	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300016422\|Ga0182039_10725504	Not Available	878	Open in IMG/M
3300020579\|Ga0210407_10557332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300020579\|Ga0210407_11344197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300020581\|Ga0210399_10488885	All Organisms → cellular organisms → Bacteria → Proteobacteria	1023	Open in IMG/M
3300020581\|Ga0210399_10553912	Not Available	953	Open in IMG/M
3300020583\|Ga0210401_10847310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	773	Open in IMG/M
3300020583\|Ga0210401_10906845	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300021086\|Ga0179596_10193014	Not Available	989	Open in IMG/M
3300021168\|Ga0210406_10092113	All Organisms → cellular organisms → Bacteria	2581	Open in IMG/M
3300021170\|Ga0210400_10748600	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300021362\|Ga0213882_10128607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1033	Open in IMG/M
3300021401\|Ga0210393_10702232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	825	Open in IMG/M
3300021406\|Ga0210386_10270443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1452	Open in IMG/M
3300021407\|Ga0210383_11655458	Not Available	525	Open in IMG/M
3300021432\|Ga0210384_10945433	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300021478\|Ga0210402_11749211	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300021560\|Ga0126371_12482995	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300022532\|Ga0242655_10093694	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300022714\|Ga0242671_1112401	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300026481\|Ga0257155_1066829	Not Available	575	Open in IMG/M
3300026498\|Ga0257156_1043829	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300027502\|Ga0209622_1039469	Not Available	850	Open in IMG/M
3300027824\|Ga0209040_10200996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1034	Open in IMG/M
3300027862\|Ga0209701_10526079	Not Available	639	Open in IMG/M
3300031057\|Ga0170834_108133949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	514	Open in IMG/M
3300031231\|Ga0170824_106472397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus → Cupriavidus basilensis	748	Open in IMG/M
3300031231\|Ga0170824_118891775	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300031446\|Ga0170820_15377776	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300031543\|Ga0318516_10566142	Not Available	650	Open in IMG/M
3300031545\|Ga0318541_10563354	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300031561\|Ga0318528_10278021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	898	Open in IMG/M
3300031561\|Ga0318528_10689308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	547	Open in IMG/M
3300031572\|Ga0318515_10513081	Not Available	639	Open in IMG/M
3300031573\|Ga0310915_10280328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1176	Open in IMG/M
3300031640\|Ga0318555_10360025	Not Available	788	Open in IMG/M
3300031668\|Ga0318542_10454980	Not Available	664	Open in IMG/M
3300031680\|Ga0318574_10399223	All Organisms → cellular organisms → Bacteria → Proteobacteria	803	Open in IMG/M
3300031713\|Ga0318496_10795413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	521	Open in IMG/M
3300031719\|Ga0306917_10553048	Not Available	904	Open in IMG/M
3300031723\|Ga0318493_10234164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	977	Open in IMG/M
3300031744\|Ga0306918_10012388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4892	Open in IMG/M
3300031754\|Ga0307475_11504532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	516	Open in IMG/M
3300031763\|Ga0318537_10049909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1517	Open in IMG/M
3300031763\|Ga0318537_10245098	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300031765\|Ga0318554_10444888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300031779\|Ga0318566_10435392	All Organisms → cellular organisms → Bacteria → Proteobacteria	644	Open in IMG/M
3300031780\|Ga0318508_1140453	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300031781\|Ga0318547_10002097	All Organisms → cellular organisms → Bacteria → Proteobacteria	7607	Open in IMG/M
3300031781\|Ga0318547_10426236	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300031793\|Ga0318548_10419595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	656	Open in IMG/M
3300031796\|Ga0318576_10180050	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300031819\|Ga0318568_10562669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	711	Open in IMG/M
3300031823\|Ga0307478_11154533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	646	Open in IMG/M
3300031835\|Ga0318517_10244170	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300031835\|Ga0318517_10510640	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300031846\|Ga0318512_10168366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1063	Open in IMG/M
3300031879\|Ga0306919_10030277	All Organisms → cellular organisms → Bacteria → Proteobacteria	3404	Open in IMG/M
3300031879\|Ga0306919_10353093	All Organisms → cellular organisms → Bacteria → Proteobacteria	1123	Open in IMG/M
3300031879\|Ga0306919_11478993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. Root123D2	512	Open in IMG/M
3300031880\|Ga0318544_10297361	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300031897\|Ga0318520_10200556	All Organisms → cellular organisms → Bacteria → Proteobacteria	1177	Open in IMG/M
3300031897\|Ga0318520_10336744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	914	Open in IMG/M
3300031910\|Ga0306923_12328260	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031912\|Ga0306921_11373182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	778	Open in IMG/M
3300031941\|Ga0310912_10291633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1262	Open in IMG/M
3300031941\|Ga0310912_10348748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1149	Open in IMG/M
3300031941\|Ga0310912_11083622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	612	Open in IMG/M
3300031945\|Ga0310913_10171948	All Organisms → cellular organisms → Bacteria	1506	Open in IMG/M
3300031945\|Ga0310913_10667131	All Organisms → cellular organisms → Bacteria → Proteobacteria	736	Open in IMG/M
3300031946\|Ga0310910_11034589	Not Available	641	Open in IMG/M
3300031959\|Ga0318530_10350034	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300031962\|Ga0307479_10135387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2411	Open in IMG/M
3300031962\|Ga0307479_11551262	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300032010\|Ga0318569_10295439	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300032010\|Ga0318569_10426684	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300032035\|Ga0310911_10066557	All Organisms → cellular organisms → Bacteria → Proteobacteria	1916	Open in IMG/M
3300032035\|Ga0310911_10277709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962	Open in IMG/M
3300032042\|Ga0318545_10086334	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300032059\|Ga0318533_10103190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1976	Open in IMG/M
3300032059\|Ga0318533_10786202	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300032064\|Ga0318510_10019831	All Organisms → cellular organisms → Bacteria → Proteobacteria	2127	Open in IMG/M
3300032065\|Ga0318513_10220812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300032068\|Ga0318553_10631588	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300032090\|Ga0318518_10044636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2086	Open in IMG/M
3300032180\|Ga0307471_102068406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	715	Open in IMG/M
3300032261\|Ga0306920_102237633	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300032515\|Ga0348332_12612000	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300033289\|Ga0310914_10030579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4290	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.23%
Aquatic	Environmental → Aquatic	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.46%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Sediment	Environmental → Aquatic → Sediment	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.15%
Loam	Environmental → Terrestrial → Soil → Loam	5.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	79.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	55.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100414801	3300001867	Forest Soil	ILASDEFVRHCPGEFAALGEFSLAGFSAPQLVFGLADEAVRS*
Ga0066388_1069640571	3300005332	Tropical Forest Soil	GRAILASDEFARYCPSEFTALGKFSLAGFSAPQLIYDLAD*
Ga0070709_116302402	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	KLTSQLGRAVLASGEFARHCAGEFTPLGEFRLAGFSTPQLVFGLEDSVQHQ*
Ga0066903_1048548272	3300005764	Tropical Forest Soil	ASGEFARHCPAEFAAIGEFTLTGFSEPQLVFGLEDEA*
Ga0075026_1002365203	3300006057	Watersheds	GILASGEFAKHCRGEFTALGEFTLPGFSAAQPVFGLEDEVPVR*
Ga0070765_1000563765	3300006176	Soil	EFARCCPDEFTALGQFSLAGFSATQLIFGLAASV*
Ga0126373_113604481	3300010048	Tropical Forest Soil	GEFARHCRGEFTPLGEFTLAGFSAVQQVFGLDDEAPAAA*
Ga0126376_108055883	3300010359	Tropical Forest Soil	ARYCPDEFTARGEFSLAGFSEPQPIFDLVDSLQSQ*
Ga0126372_108866362	3300010360	Tropical Forest Soil	SGEFARYCPGDFTGLGEFTLAGFSTPQMIFDLVNSANSQ*
Ga0126379_135977531	3300010366	Tropical Forest Soil	VASGEFARHCTGEFAPLGEFALPGFAAPQQVFGLEDEAPPRQ*
Ga0126381_1007740221	3300010376	Tropical Forest Soil	RLRRVILASSEFARHCGGEFAALGEFTLAGFSAPQQIFGLLEEG*
Ga0126381_1020101283	3300010376	Tropical Forest Soil	ASSEFAEHCRREFTALGEFTLPGFSAAQKIFGLADEVPVR*
Ga0137389_108108523	3300012096	Vadose Zone Soil	GQLGRAILASDEFSRHCPGEFTALGEFSLAGFSAPQLVFGLEDESLQG*
Ga0137396_101966093	3300012918	Vadose Zone Soil	GRTILASGEFSHHCPSEFTALGEFSLAGFSAPQLVFGLEDEFLQ*
Ga0126375_104998083	3300012948	Tropical Forest Soil	EKLAGELGRRVLASGEFAKHCRNGFTALGEFTLPGFSAAQLVFGLEDEVPVR*
Ga0182036_112676982	3300016270	Soil	RAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLGDSV
Ga0182041_107361152	3300016294	Soil	SGEFARHCRGEFTPLGEFTLAGFSAVQEVFGLDDEAPAAA
Ga0182041_112645711	3300016294	Soil	DEFARYCPGEFIALGEFSLAGFSAPQSIYDLADSV
Ga0182033_100403721	3300016319	Soil	LGRGVLASGEFARHCRDEFTALGEFTLPGFSAAQLVFGLEDEVPVR
Ga0182033_114683552	3300016319	Soil	AILASGEFARHCPGGFTALGEFALAGFSVSQSVYGLEDEAVGGS
Ga0182034_120482341	3300016371	Soil	MEKLAGRLQRVILASSEFARHCGAEFAALGEFTLAGFSAPQQIFGLTAHEGVAGRGA
Ga0182040_101555311	3300016387	Soil	IEKLTGQLGRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLADSV
Ga0182040_111084261	3300016387	Soil	AGELGRGVLASSEFAKHCRGDFTSLGEFTLPGFSTAQTVFGFADEIPIG
Ga0182040_112931482	3300016387	Soil	ASSEFAEHCRGEFTALGEFTLPGFSAAQEVFGLADEIPIR
Ga0182039_107255042	3300016422	Soil	DEFARYCPGEFTALGEFSLAGFSAPQLIYDLGDSV
Ga0210407_105573321	3300020579	Soil	DEFTRCCPGEFTALGEFSLAGFSAPQLIYDLTDSV
Ga0210407_113441972	3300020579	Soil	QLGRTILASGEFARHCAEEFTPLGEFRLAGFSAPQLVFGLEDSVQRQ
Ga0210399_104888853	3300020581	Soil	LASGEFARHCAGEFTPLGEYRLAGFSAPQLVFGLEDSVQRQ
Ga0210399_105539121	3300020581	Soil	AILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLADSV
Ga0210401_108473101	3300020583	Soil	EKLTGQLGRAILASGEFAGHCAGEFTPLGEFRLAGFSAPQLVFGLTDEVVRP
Ga0210401_109068453	3300020583	Soil	ASEEFARHCRGEFAPLGEFTLPGFSTAQSVFGLEDDAPVRR
Ga0179596_101930144	3300021086	Vadose Zone Soil	LGRAILASDEFSRHCPSEFTALGEFSLAGFSAPQLVFGLEDESLQ
Ga0179584_11624794	3300021151	Vadose Zone Soil	GRAILASGEFARHCAGEFTPLGEFRLAGFSSPQLVFALAVE
Ga0210406_100921134	3300021168	Soil	KLTSQLGRAVLASGEFARHCAGEFTPLGEFRLAGFSTPQLVFGLEDSVQHQ
Ga0210400_107486002	3300021170	Soil	LASGEFAKHCRGEFTALGEFTLPGFSAAQPVFGLEDEVPVR
Ga0213882_101286071	3300021362	Exposed Rock	TGQLERTILASGEFARYCPSDFTALGEFTLAGFSTPQMIFDLVNSANSQ
Ga0210393_107022321	3300021401	Soil	EKLTGQLGRAILASDEFARCCPGEFTALGEFSLAGFSAPQLIYDLTDSV
Ga0210386_102704433	3300021406	Soil	IEKLTSQLGRAVLASGEFARCCPDEFTALGQFSLAGFSATQLIFGLAASV
Ga0210383_116554582	3300021407	Soil	GRAVLASGEFARCCPDEFTALGQFSLAGFSATQLIFGLAASVSGQ
Ga0210384_109454331	3300021432	Soil	AILASDEFARCCPGEFTALGEFSLAGFSAPQLIYDLTDSV
Ga0210402_117492111	3300021478	Soil	LASIEFARHCPDEFISLGEFTLPGFSAAQSVFGLEDEVPLG
Ga0126371_124829952	3300021560	Tropical Forest Soil	ARYCPEDFTPRGEFSLAGFSAPQPIFDLVDSRQSQ
Ga0242655_100936941	3300022532	Soil	AVLAPGEFARHCAGEFTPLGEYRLAGFSAPQLVFGLEDSVQRQ
Ga0242671_11124011	3300022714	Soil	LTGKLGRAILASGEFARHCAGEFTPLGEFRLAGFSAPQLVFGLEDSVQRQ
Ga0257155_10668291	3300026481	Soil	SQLGRAVLASGEFARCCPDEFTAFGQFSLAGFSATQLIFGLAASV
Ga0257156_10438291	3300026498	Soil	AAGEFARHCAGEFTPLGEFRLAGFSTPQLVFGLEDSVQHQ
Ga0209622_10394694	3300027502	Forest Soil	LTGQLGRAILASEEFARHCPGEFSALGEFTLPGFSALQLAFGLED
Ga0209040_102009962	3300027824	Bog Forest Soil	EILASGEFASHCRGEFVALGEFTLPGFSTAQEMFGLGDEGLPG
Ga0209701_105260792	3300027862	Vadose Zone Soil	ASGEFADHCRPELVAVGEFALAGFSAPQTVFGLADEAAPESV
Ga0170834_1081339491	3300031057	Forest Soil	RIEKLTSQLGRSVLASGEFAGHCTGEFTPLGEFRLAGFTAPQLVFGLEDSVQRQ
Ga0170824_1064723972	3300031231	Forest Soil	ASGEFARHCRGDFTALGEFTLSGFSAAQQVFGLEDEAPAVA
Ga0170824_1188917751	3300031231	Forest Soil	ARIEKLTSQLGRAVLASGEFARCCPDEFIALGQFSLAGFSATQLIFGLAASV
Ga0170820_153777761	3300031446	Forest Soil	QVGREILASGEFARHCPDEFTALGEFTLPGFSATQQVFGLENEAPAVA
Ga0318516_105661422	3300031543	Soil	ILASDEFARYCPGEFTDLGEFSLAGFSAPQLIYDLGDSV
Ga0318541_105633543	3300031545	Soil	ARIEKLAGELGRGVLASGEFANHCRGEFTSLGQFTLPGFSTAQTVFGLADEIPIG
Ga0318528_102780213	3300031561	Soil	GALGRGVLASGEFAEHCRGEFTALGEFTLAGFSAAQQIFGLEDEIPVR
Ga0318528_106893082	3300031561	Soil	IEKLAGELGRGVLASGEFATHCRGEFTALGEFTLPGFSAAQEIFGLADEIPVE
Ga0318515_105130812	3300031572	Soil	ARIEKLTGQLGRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLGDSV
Ga0310915_102803283	3300031573	Soil	IEKLAGELGRGVLASGEFARHCRDEFTALGEFTLPGFSAAQLVFGLEDEVPVR
Ga0318555_103600251	3300031640	Soil	QLGRAILASDEFARHCPGEFAPLGEFSLAGFSTPQLVFGLRDESLAALNAKNARRQ
Ga0318542_104549801	3300031668	Soil	RLGRAILASGEFARHCPAGFAALGEFALAGFSATQSVYGLEDEAVEGS
Ga0318574_103992233	3300031680	Soil	VLASGEFVKHCRGEFTSLGEFTLPGFSTAQTVFGLADEIPIG
Ga0318496_107954131	3300031713	Soil	ELGRGILASDEFARCCPGEFTALGEFTLAGFSAAQQIFGLEDEIPVR
Ga0306917_105530482	3300031719	Soil	GRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLGDSV
Ga0318493_102341641	3300031723	Soil	QLGRAILASGEFARYCPADFTALGEFSLAGFSAPQAVFGLEETRSQR
Ga0306918_100123881	3300031744	Soil	QLGRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLADSV
Ga0307475_115045322	3300031754	Hardwood Forest Soil	IEKLAGELGRGILASNEFARHCRGEFTALGEFTLPGFSAAQSVFGLEDEVPIR
Ga0318537_100499091	3300031763	Soil	KLTGQLGRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLADSV
Ga0318537_102450981	3300031763	Soil	GEFANHCRGEFTSLGQFTLPGFSTAQTVFGLADEIPIG
Ga0318554_104448881	3300031765	Soil	GEFAQHCAGEFTALGEFTLPGFSAAQRVFGLEDETPI
Ga0318566_104353922	3300031779	Soil	AKHCRGEFTSLGEFTLPGFSTAQTVFGLADETPIG
Ga0318508_11404531	3300031780	Soil	EKLAGELGRGVLASGEFANHCRGEFTSLGQFTLPGFSTAQTVFGLADEIPIG
Ga0318547_100020971	3300031781	Soil	AMPDRSAILASGEFARYCPADFTALGEFSLAGFSAPQAVFGLEETRSQR
Ga0318547_104262361	3300031781	Soil	PAVNFAQRIEKLTSQLGREILASGEFAQHCRGEFTALGEFTLAGFSAAQQVFGLEGDAPAVA
Ga0318548_104195953	3300031793	Soil	GILASSEFAQHCAGEFTALGEFTLPGFSAAQRVFGLEDETPIR
Ga0318576_101800501	3300031796	Soil	QLGRVILASGEFARHCSHEFTALGQFNLAGFSAPQLVFGLAESIHRQ
Ga0318568_105626691	3300031819	Soil	ALGRGVLASGEFAEHCRGEFTALGEFTLAGFSAAQQIFGLEDEIPVR
Ga0307478_111545332	3300031823	Hardwood Forest Soil	LEKLAGELGRGILASGEFAKHCRGEFTALGEFTLPGFSAAQPVFGLEDEVPVR
Ga0318517_102441702	3300031835	Soil	LGRAILASDEFARYCPGEFTALGEFSLVGFSAPQLIYDLGDSV
Ga0318517_105106401	3300031835	Soil	ARIEKLAGELGRGILASGEFAKHCRTEFTALGEFTLPGFSAAQLVFGLEDEVPVRQ
Ga0318512_101683663	3300031846	Soil	ASGEFARHCRDEFTALGEFILPGFSTAQPVFGLEEDTPAVA
Ga0306919_100302775	3300031879	Soil	ARIEKLTGQLGRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLADSV
Ga0306919_103530933	3300031879	Soil	EFAKHCRGEFTSLGEFTLPGFSTAQTVFGLADETPIG
Ga0306919_114789931	3300031879	Soil	GRLGRVILASSEFARHCGSEFAALGEFTLAGFSAPQQIYGLLEEG
Ga0318544_102973612	3300031880	Soil	ASGEFAKHCRTEFTALGEFTLPGFSAAQLVFGLEDEVPVRQ
Ga0318520_102005561	3300031897	Soil	LTSQLGRAILASGEFARYCPGDFTGLGEFTLAGFSTPQMIFDLGNSANTQ
Ga0318520_103367441	3300031897	Soil	IEKLAGELGRGVLASGEFVKHCRGEFTSLGEFTLPGFSTAQTVFGLADEIPIG
Ga0306923_123282602	3300031910	Soil	RAILASGEFARYCPGDFTALGEFSLAGFSAPQLVFGLEDSAQSQ
Ga0306921_113731821	3300031912	Soil	GEFAQHCPGEFTALGEFTLPGFSAAQRVFGLQDEAPIR
Ga0310912_102916331	3300031941	Soil	IEKLTSQLRRAILASGEFVRHCPGEFTALGEFSLAGFSAPQLVFGLADEAVRC
Ga0310912_103487481	3300031941	Soil	LTGQLGRAILASDEFARYCPGEFTDLGEFSLAGFSAPQLIYDLGDSV
Ga0310912_110836222	3300031941	Soil	LAGELGRGVLASGEFAEHCRGEFTALGEFTLAGFSAAQQIFGLEDEIPVR
Ga0310913_101719481	3300031945	Soil	GRVILASGEFARHCSHEFTALGQFNLAGFSAPQLVFGLAESIYRQ
Ga0310913_106671311	3300031945	Soil	LGRGVLASGEFVKHCRGEFTSLGEFTLPGFSTAQTVFGLADEIPIG
Ga0310910_110345893	3300031946	Soil	GQLGREILASGEFARHCRDEFTALGEFILPGFSTAQPVFGLEEDTPAVA
Ga0318530_103500342	3300031959	Soil	VLASGEFAEHCRGEFTALGEFTLAGFSAAQQIFGLEDEIPVR
Ga0307479_101353873	3300031962	Hardwood Forest Soil	IEKLAGELGRGILASNEFARHCRGEFTALGEFTLPGFSAAQTVFGLEDEVPLR
Ga0307479_115512622	3300031962	Hardwood Forest Soil	RIEKLTSQLGRAVLASGEFARCCPDEFTALGQFSLAGFSATQLIFGLAASV
Ga0318569_102954391	3300032010	Soil	EKLAGRLRRVILASGEFARHCGGEFAALGEFTLAGFSAPQQIFGLLEEG
Ga0318569_104266841	3300032010	Soil	ASGEFATHCRGEFTALGEFTLPGFSAAQEVFGLADEIPIR
Ga0310911_100665572	3300032035	Soil	GEFAQHCRGEFTALGEFTLAGFSAAQQVFGLEGDAPAVA
Ga0310911_102777093	3300032035	Soil	ELRRGVLASSEFAEHWRGEFTALGEFTLPGFSSAQLVFGLEDEVPVRQ
Ga0318545_100863343	3300032042	Soil	ILASGEFARHCSHEFTALGQFNLAGFSAPQLVFGLAESIYRQ
Ga0318533_101031903	3300032059	Soil	EKLTGQLGRVILASGEFARHCSHEFTALGQFNLAGFSAPQLVFGLAESIHRQ
Ga0318533_107862023	3300032059	Soil	ELGRVILASDEFARCCPGEFTALGEFTLAGFSAAQQIFGLEDEIPVR
Ga0318510_100198311	3300032064	Soil	AQHCCGEFTALGEFTLPGFSAPQQVFGLASDAPALA
Ga0318513_102208123	3300032065	Soil	SSEFAEHCRGEFTALGEFTLAGFSAAQQIFGLEDEIPV
Ga0318553_106315881	3300032068	Soil	GQLGRVILASGEFARHCSHEFTALGQFNLAGFSAPQLVFGLAESIHRQ
Ga0318518_100446363	3300032090	Soil	EFAEHCRGEFTALGEFTLPGFSAAQEIFGLADETPIA
Ga0307471_1020684063	3300032180	Hardwood Forest Soil	LAGELGRGILASSEFAKHSAGEFRALGEFTLPGFSASQRVFGLEDETPIR
Ga0306920_1022376332	3300032261	Soil	QLGRAILASGEFARHCAGEFTPLGEFKLTGFSAPQLVFGLEDSVQHQ
Ga0348332_126120001	3300032515	Plant Litter	GEFARHCPDEFAAIGEFALRGFAATQPVFGLRDETP
Ga0310914_100305793	3300033289	Soil	RIEKLTGQLGRAILASDEFARYCPGEFTALGEFSLAGFSAPQLIYDLADSV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083002

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences