Metagenome / Metatranscriptome Family F083009

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083009
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	63 residues
Representative Sequence	MASEQCQHSKRVSGVVRLDFARPDALDGPMYSGAVSVGVCEECGHIELYAKLHHLLGDWLRKT
Number of Associated Samples	87
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.91 %
% of genes near scaffold ends (potentially truncated)	30.09 %
% of genes from short scaffolds (< 2000 bps)	65.49 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.867 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.009 % of family members)
Environment Ontology (ENVO)	Unclassified (32.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (84.071 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.79% β-sheet: 32.97% Coil/Unstructured: 58.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00158	Sigma54_activat	19.47
PF13426	PAS_9	7.08
PF00989	PAS	4.42
PF03707	MHYT	4.42
PF14310	Fn3-like	2.65
PF00330	Aconitase	1.77
PF00575	S1	1.77
PF13481	AAA_25	0.88
PF00072	Response_reg	0.88
PF01790	LGT	0.88
PF00196	GerE	0.88
PF00581	Rhodanese	0.88
PF14417	MEDS	0.88
PF08421	Methyltransf_13	0.88
PF13620	CarboxypepD_reg	0.88
PF04972	BON	0.88
PF00886	Ribosomal_S16	0.88
PF14559	TPR_19	0.88
PF02683	DsbD	0.88
PF08448	PAS_4	0.88
PF01479	S4	0.88
PF10282	Lactonase	0.88
PF00753	Lactamase_B	0.88
PF04239	DUF421	0.88
PF13188	PAS_8	0.88
PF08447	PAS_3	0.88
PF04185	Phosphoesterase	0.88
PF13185	GAF_2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG3300	MHYT domain, NO-binding membrane sensor	Signal transduction mechanisms [T]	4.42
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	4.42
COG0228	Ribosomal protein S16	Translation, ribosomal structure and biogenesis [J]	0.88
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG2323	Uncharacterized membrane protein YcaP, DUF421 family	Function unknown [S]	0.88
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.87 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.87 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.87 %
Unclassified	root	N/A	45.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.42 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.42 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.77 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.88 %
unclassified Ectothiorhodospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.77 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.88 %
Ectothiorhodospiraceae bacterium 2226	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium 2226	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.13 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.27 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.77 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	0.88 %
Ectothiorhodospiraceae bacterium 2226	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium 2226	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001154\|JGI12636J13339_1000036	All Organisms → cellular organisms → Bacteria	16239	Open in IMG/M
3300001593\|JGI12635J15846_10038050	Not Available	3776	Open in IMG/M
3300001593\|JGI12635J15846_10137974	Not Available	1692	Open in IMG/M
3300001593\|JGI12635J15846_10436730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300004091\|Ga0062387_100004831	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4336	Open in IMG/M
3300004092\|Ga0062389_101787974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300004119\|Ga0058887_1462500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300004121\|Ga0058882_1355439	Not Available	760	Open in IMG/M
3300004468\|Ga0068977_1085610	Not Available	557	Open in IMG/M
3300004602\|Ga0068960_1261988	Not Available	528	Open in IMG/M
3300004631\|Ga0058899_11997215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300004635\|Ga0062388_100012217	All Organisms → cellular organisms → Bacteria	4645	Open in IMG/M
3300005541\|Ga0070733_10019679	Not Available	4206	Open in IMG/M
3300005541\|Ga0070733_10042986	Not Available	2823	Open in IMG/M
3300005541\|Ga0070733_10076896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2108	Open in IMG/M
3300005541\|Ga0070733_10341332	Not Available	993	Open in IMG/M
3300005541\|Ga0070733_10527656	Not Available	790	Open in IMG/M
3300005542\|Ga0070732_10324662	Not Available	925	Open in IMG/M
3300005591\|Ga0070761_10220164	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300005602\|Ga0070762_10002776	All Organisms → cellular organisms → Bacteria	8307	Open in IMG/M
3300005610\|Ga0070763_10650134	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300005712\|Ga0070764_10034152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → unclassified Ectothiorhodospiraceae → Ectothiorhodospiraceae bacterium 2226	2571	Open in IMG/M
3300005921\|Ga0070766_10284479	Not Available	1058	Open in IMG/M
3300006050\|Ga0075028_100005696	All Organisms → cellular organisms → Bacteria	4868	Open in IMG/M
3300006176\|Ga0070765_100019124	All Organisms → cellular organisms → Bacteria	5071	Open in IMG/M
3300009520\|Ga0116214_1307453	Not Available	609	Open in IMG/M
3300009521\|Ga0116222_1014184	All Organisms → cellular organisms → Bacteria	3693	Open in IMG/M
3300009521\|Ga0116222_1066425	Not Available	1560	Open in IMG/M
3300009522\|Ga0116218_1296363	Not Available	724	Open in IMG/M
3300009524\|Ga0116225_1289323	Not Available	732	Open in IMG/M
3300009525\|Ga0116220_10217460	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300009672\|Ga0116215_1054190	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300009700\|Ga0116217_10054092	All Organisms → cellular organisms → Bacteria	2892	Open in IMG/M
3300009700\|Ga0116217_10251578	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300010343\|Ga0074044_10003463	All Organisms → cellular organisms → Bacteria → Acidobacteria	13415	Open in IMG/M
3300010860\|Ga0126351_1232806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300011074\|Ga0138559_1033934	Not Available	504	Open in IMG/M
3300011083\|Ga0138560_1118057	Not Available	503	Open in IMG/M
3300011120\|Ga0150983_11191169	Not Available	562	Open in IMG/M
3300011120\|Ga0150983_15609746	Not Available	500	Open in IMG/M
3300012362\|Ga0137361_11636073	Not Available	564	Open in IMG/M
3300012363\|Ga0137390_10642555	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300012922\|Ga0137394_10537180	Not Available	992	Open in IMG/M
3300017822\|Ga0187802_10007589	All Organisms → cellular organisms → Bacteria	3393	Open in IMG/M
3300017933\|Ga0187801_10035592	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300017933\|Ga0187801_10117356	Not Available	1019	Open in IMG/M
3300017943\|Ga0187819_10295344	Not Available	942	Open in IMG/M
3300017943\|Ga0187819_10377726	Not Available	816	Open in IMG/M
3300017955\|Ga0187817_10165495	Not Available	1407	Open in IMG/M
3300017995\|Ga0187816_10010377	All Organisms → cellular organisms → Bacteria	3435	Open in IMG/M
3300018006\|Ga0187804_10220267	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300020579\|Ga0210407_10178158	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1647	Open in IMG/M
3300020580\|Ga0210403_11206204	Not Available	583	Open in IMG/M
3300020582\|Ga0210395_10085913	All Organisms → cellular organisms → Bacteria	2321	Open in IMG/M
3300020582\|Ga0210395_10976526	Not Available	628	Open in IMG/M
3300020582\|Ga0210395_11120923	Not Available	580	Open in IMG/M
3300020583\|Ga0210401_10022958	All Organisms → cellular organisms → Bacteria	5976	Open in IMG/M
3300021168\|Ga0210406_10644954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	822	Open in IMG/M
3300021168\|Ga0210406_10807281	Not Available	713	Open in IMG/M
3300021170\|Ga0210400_10009364	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7932	Open in IMG/M
3300021170\|Ga0210400_10069857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2749	Open in IMG/M
3300021171\|Ga0210405_10047012	All Organisms → cellular organisms → Bacteria	3421	Open in IMG/M
3300021180\|Ga0210396_10031285	All Organisms → cellular organisms → Bacteria	4919	Open in IMG/M
3300021181\|Ga0210388_11810001	Not Available	503	Open in IMG/M
3300021406\|Ga0210386_11765568	Not Available	510	Open in IMG/M
3300021407\|Ga0210383_10860124	Not Available	774	Open in IMG/M
3300021420\|Ga0210394_10071464	All Organisms → cellular organisms → Bacteria	3006	Open in IMG/M
3300021432\|Ga0210384_10223103	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1696	Open in IMG/M
3300021432\|Ga0210384_11050182	Not Available	717	Open in IMG/M
3300021433\|Ga0210391_10023339	All Organisms → cellular organisms → Bacteria	4985	Open in IMG/M
3300021433\|Ga0210391_10674353	Not Available	810	Open in IMG/M
3300021474\|Ga0210390_10636295	Not Available	892	Open in IMG/M
3300021478\|Ga0210402_11894634	Not Available	522	Open in IMG/M
3300021479\|Ga0210410_10592231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	985	Open in IMG/M
3300021559\|Ga0210409_10024727	All Organisms → cellular organisms → Bacteria	5812	Open in IMG/M
3300021560\|Ga0126371_12773856	Not Available	594	Open in IMG/M
3300022505\|Ga0242647_1007804	Not Available	904	Open in IMG/M
3300022509\|Ga0242649_1055430	Not Available	567	Open in IMG/M
3300027370\|Ga0209010_1000007	All Organisms → cellular organisms → Bacteria	230472	Open in IMG/M
3300027565\|Ga0209219_1001069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4740	Open in IMG/M
3300027568\|Ga0208042_1076239	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300027591\|Ga0209733_1159739	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300027604\|Ga0208324_1002725	All Organisms → cellular organisms → Bacteria	6557	Open in IMG/M
3300027604\|Ga0208324_1016062	All Organisms → cellular organisms → Bacteria	2360	Open in IMG/M
3300027604\|Ga0208324_1152058	Not Available	629	Open in IMG/M
3300027641\|Ga0208827_1154744	Not Available	635	Open in IMG/M
3300027660\|Ga0209736_1028594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1665	Open in IMG/M
3300027674\|Ga0209118_1000192	All Organisms → cellular organisms → Bacteria	40114	Open in IMG/M
3300027674\|Ga0209118_1000208	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	37744	Open in IMG/M
3300027696\|Ga0208696_1023110	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	2321	Open in IMG/M
3300027729\|Ga0209248_10009313	All Organisms → cellular organisms → Bacteria	3099	Open in IMG/M
3300027853\|Ga0209274_10038007	All Organisms → cellular organisms → Bacteria	2254	Open in IMG/M
3300027853\|Ga0209274_10176335	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300027855\|Ga0209693_10016986	All Organisms → cellular organisms → Bacteria	3470	Open in IMG/M
3300027867\|Ga0209167_10110710	Not Available	1414	Open in IMG/M
3300027879\|Ga0209169_10061340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1947	Open in IMG/M
3300027905\|Ga0209415_10556323	Not Available	864	Open in IMG/M
3300028906\|Ga0308309_10060675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2774	Open in IMG/M
3300028906\|Ga0308309_10795854	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300028906\|Ga0308309_11519718	Not Available	571	Open in IMG/M
3300030659\|Ga0316363_10296386	Not Available	647	Open in IMG/M
3300030706\|Ga0310039_10128567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1039	Open in IMG/M
3300030707\|Ga0310038_10246438	Not Available	829	Open in IMG/M
3300031090\|Ga0265760_10205099	Not Available	667	Open in IMG/M
3300031090\|Ga0265760_10229419	Not Available	636	Open in IMG/M
3300031708\|Ga0310686_100127572	All Organisms → cellular organisms → Bacteria	2778	Open in IMG/M
3300031708\|Ga0310686_100693186	All Organisms → cellular organisms → Bacteria	11235	Open in IMG/M
3300031718\|Ga0307474_10494722	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300031754\|Ga0307475_10267053	Not Available	1372	Open in IMG/M
3300031754\|Ga0307475_10766385	Not Available	767	Open in IMG/M
3300031962\|Ga0307479_11665376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300032160\|Ga0311301_10024265	All Organisms → cellular organisms → Bacteria	16548	Open in IMG/M
3300032515\|Ga0348332_10058953	Not Available	560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.50%
Aquatic	Environmental → Aquatic	11.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.61%
Freshwater	Environmental → Aquatic → Freshwater	10.62%
Sediment	Environmental → Aquatic → Sediment	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.95%
Loam	Environmental → Terrestrial → Soil → Loam	24.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.40%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	24.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.01%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.27%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	11.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.08%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004602	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 52 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011074	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011083	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 45 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022505	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12636J13339_100003615	3300001154	Forest Soil	MVAEQCQHSNKVSGLVRLDYARQDAPDGPVYSGTVSVGVCEECGHIELYAKLHHLLCDWLRKT*
JGI12635J15846_100380504	3300001593	Forest Soil	MSFEPCQHPNRVNGRVRLDFARQEAAEGPVYSGTVSVAICEDCGYIELHAEFQHLLCDWLRRA*
JGI12635J15846_101379744	3300001593	Forest Soil	MAPEPCQHSKRVSGIVKLDFARPDALDGPMYSGTVSVGVCEECGHIELYAKLHHLLSDWLHKT*
JGI12635J15846_104367301	3300001593	Forest Soil	TGAINNEHAVSNRLPEGGNMAPDKCQHPRVVSSVVKMDFVRPDDVDGPVYSGTVSAGICEDCGQIKLYAKSHRLLVDWLLKA*
Ga0062387_1000048314	3300004091	Bog Forest Soil	MPSEQCPHPSRVSGLVRLDFARPDAPDGPTYSGAVSAAVCEKCGHIEMHAKLDRLLCDWLRKT*
Ga0062389_1017879741	3300004092	Bog Forest Soil	MAAEQCQHSKRVTTVVRLDFARQDAPDGPMYSGAVSAGVCEECGHVELYAKLHHLLCDWLLAT*
Ga0058887_14625001	3300004119	Forest Soil	MAPAPCEHTRRVSGVVRLDFARPDALDGPMYSGAVSVGVCEECGHVELYAQLHHLLSDWLRKA*
Ga0058882_13554392	3300004121	Forest Soil	MAWEQCQHFNRVNGVIQLDFARREDPDGSMYTGEVNCAVCEACGHIELYASLHHLLCDWLRKA*
Ga0068977_10856101	3300004468	Peatlands Soil	MASEQCQHSKRVSGVVRLDFARPDALDGPMYSGAVSVGVCEECGHIELYAKLHHLLGDWLRKT*
Ga0068960_12619882	3300004602	Peatlands Soil	SRLPRGGEMAPEPCQHSKRVSGVVKLDFTRPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT*
Ga0058899_119972152	3300004631	Forest Soil	MAPEPCEHSKRVSGVVKLDFARPEAVDGPVYSGAVSVAVCEECGHIELYAKLHHLLGDWLRKT*
Ga0062388_1000122173	3300004635	Bog Forest Soil	MASEPCQHSNRVSGLVRLDFARQNAPEGPIYSGAVSASVCEDCGHIELYAKTHHLLSDWLQKT*
Ga0070733_100196793	3300005541	Surface Soil	MASEPCQHSKRVSGLVRLDFARQSAPEGPIYSGAVSASVCEDCGHIELYAKTHHLLSDWLHKT*
Ga0070733_100429863	3300005541	Surface Soil	MAAEQCQHSKRVRGLVRLDFARQDAPDGPTYSGAVSVGVCEECGHMELYGKLHRLLCDWLRKS*
Ga0070733_100768962	3300005541	Surface Soil	MASEPCQHSNRINGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQKT*
Ga0070733_103413322	3300005541	Surface Soil	MASEPCQHSNRVNGLVKLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQKT*
Ga0070733_105276562	3300005541	Surface Soil	MAPEQCRHSNRISGLVRLDFARPDAPDGPMYSGEISVGVCDECGHIELYAKLNHLLCDWLRKT*
Ga0070732_103246621	3300005542	Surface Soil	MAPEPCEHSRRVSGVVRLDFARPDALDGPMYSGAVSVGVCEECGHIELYAKLHHLLGDRLRKA*
Ga0070761_102201641	3300005591	Soil	VAARGRMASEPCQHSKRVSGLVRLDFARQNAPEGPMYSGAVSASVCEDCGHIELYAKTHHLLSDWLHKT*
Ga0070762_100027767	3300005602	Soil	MASESCEHSNRVSGLVRLDFARREAPDGPTYSGAVSAGVCEECGHIELYAKLPNLLRDWLMKA*
Ga0070763_106501341	3300005610	Soil	MASESCQHSKRISAVVKLDFVRPNALDGPIYSGAVSVVICEGCGHIELYAKLHHLLSDWLQKT*
Ga0070764_100341522	3300005712	Soil	SESCEHSNRVSGLVRFDFARREAPDGPTYSGAVSAGVCEECGHIELYAKLPNLLRDWLMKA*
Ga0070766_102844792	3300005921	Soil	MASEPCQHSNRVSGLVRLDFARQNAPEGSIYSGAVSASVCEDCGQIEL
Ga0075028_1000056963	3300006050	Watersheds	VAREKCHHVNRVSGLLSLDFARRDAPDGPVYSGTVSIGVCEECGHIELCADLHNLLCDWLRRT*
Ga0070765_1000191242	3300006176	Soil	MASEPCQHTNRVSGLLRLDFARQNAPEGPMYSGAVSASVCEDCGHIELYAKMHHLLSDWLQKT*
Ga0116214_13074531	3300009520	Peatlands Soil	MAPEPCQDSKRVSGVVKLDFTRPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT*
Ga0116222_10141843	3300009521	Peatlands Soil	MASEPCQHSNRVNGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGNLHHLLCDWLQKT*
Ga0116222_10664252	3300009521	Peatlands Soil	MASEPCQHSKRVSGLVRLDFARPEAPDGPGYTGAVSAGVCEECGHIEMYAKLHHLLCDW
Ga0116218_12963631	3300009522	Peatlands Soil	MAPEPCQHFKRVSGVVTLDFARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLQKT*
Ga0116225_12893232	3300009524	Peatlands Soil	AGCREGGKMAPEPCQHFKRVSGVVTLDFARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLQKT*
Ga0116220_102174602	3300009525	Peatlands Soil	VRLDFARQDAPDGSIYSGAVSAGICEACGHIELYGKLHHLLCDWLQKT*
Ga0116215_10541902	3300009672	Peatlands Soil	MASEPCQHSKRVSGLVRLDFARPEAPDGPGYTGAVSAGVCEECGHIEMYAKLHHLLCDWLQKT*
Ga0116217_100540923	3300009700	Peatlands Soil	MASEPCQHSKRVSGLVRLDFARPEAPDGPAYTGAVSAGVCEECGHIEMYAKLHHLLCDWLQKT*
Ga0116217_102515782	3300009700	Peatlands Soil	MAPEPCQHSKRVSGVVKLDFTRPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT*
Ga0074044_100034636	3300010343	Bog Forest Soil	MAPEPCQHFKRASGVVKLDFARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLDDWLRKT*
Ga0126351_12328062	3300010860	Boreal Forest Soil	EGEMIAEQCRHSNRVSGVVKLDLARQDVPDGPVYSGTVSVGVCEECGHVELYAKLHHLLCDWLRKT*
Ga0138559_10339342	3300011074	Peatlands Soil	MASEQCQHSKRVSGVVRLDFARPDALDGPMYSGAVSVGVSEECGHIELYAKLHHLLGDWLRKT*
Ga0138560_11180571	3300011083	Peatlands Soil	MAPEPCQHFKRVSGVVTLDFALPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLQKT*
Ga0150983_111911691	3300011120	Forest Soil	MAPEPCEHSRRVSGVVKLDFVRPEALDGPTYSGAVSVGVCEECGHVELYAKLHHLLGDWLRKA*
Ga0150983_156097461	3300011120	Forest Soil	MAAEQCQHSDRVRGLVRLDFARQDAPDGPMYSGAVSVGVCEQCGHVEMYAKLHHLLCDWLRKS*
Ga0137361_116360732	3300012362	Vadose Zone Soil	AHARRVSGVVTLDFARQDDPDGSVYSGVVSVGVCEECGHMELYAKLHSLLCDWLRMTES*
Ga0137390_106425552	3300012363	Vadose Zone Soil	GELAPEHCAHTRRVSGVVTLDFARQDDPDGSVYSGVVSVGVCEECGHMELYAKLHSLLCDWLRMTES*
Ga0137394_105371802	3300012922	Vadose Zone Soil	MAPEHCPHARRVSGLVTLDFARQGDPVVSLYTGVVSVGVCEECGHIELYAKLHGLLCDWLRKAES*
Ga0187802_100075892	3300017822	Freshwater Sediment	MAPEPCQHFKRVSGVVKLDFARPDALDGPIYSGAVSVCVCEDCGHIELYAKLHHLLDDWLRKT
Ga0187801_100355922	3300017933	Freshwater Sediment	MAPEPCKHSKRVSGVVKLDFARPDAVDGPVYSGAVSVGVCEECGQIELYAKLHHLLGDWLRKT
Ga0187801_101173561	3300017933	Freshwater Sediment	MAPEPCEHSKRVSGVVKLDFARPDALDGPIYSGAVSVGVCEDCGHIELYARLHHLLGDWLRKT
Ga0187819_102953442	3300017943	Freshwater Sediment	MAPEPCKHSKRVSGVVKLDFSRPDAVDGPVYSGAVSVGVCEECGQIEMYAKLHHLLGDWLRKT
Ga0187819_103777261	3300017943	Freshwater Sediment	MAPEPCQHFKRVSGVVKLDFARQDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT
Ga0187817_101654951	3300017955	Freshwater Sediment	MAPEPCKHSKRVSGVVKLDFARPDAVDGPVYSGAVSVGVCEECGQIELYAKLHH
Ga0187816_100103775	3300017995	Freshwater Sediment	MAPEPCEHSKRVSGVVKLDFARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT
Ga0187804_102202671	3300018006	Freshwater Sediment	MAPEPCQHFKRVSGVVKLDFARPDALDGPIYSGAVSVGVCEDCGHIELYARLHHLLGD
Ga0210407_101781582	3300020579	Soil	MASERCQHSKRISGLVKLDFARPDDLDGPVYSGAVAVGVCEECGHVELYAKLHRLLGDWLRKT
Ga0210403_112062042	3300020580	Soil	MASQQCQHSNRVSGLVKLDFARQDAPDGSTYSGTILAGVCEDCGHIELYAKLHHLLSDWLLKT
Ga0210395_100859132	3300020582	Soil	MASEPCQHSNRVNGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQKT
Ga0210395_109765261	3300020582	Soil	GENLAPEQCQHSKRISGVVKLDFARPDAPDGPTYAGSIAVGVCQDCGHIEAFAKLHHLLCDWLHKA
Ga0210395_111209231	3300020582	Soil	MAAEQCQHSKRVRGLVRLDFARQDAPDGPTYSGAVSVGVCEECGHMELYGKLHRLLC
Ga0210401_100229584	3300020583	Soil	MAAEQCQHSKRVRGLVRLDFARQDAPDGPTYSGAVSVGVCEECGHMELYGKLHRLLCDWLRKS
Ga0210406_106449542	3300021168	Soil	MASDQCQHSKRASGLVRLDFARPDAPDGPTYSGGVSVGVCEECGQIELYAKLHRLLCDWLLKT
Ga0210406_108072811	3300021168	Soil	MWYRTVAARGRMASEQCQHSNRVSGLVRVEFTRPDAPDGSTYSGAVSAGVCEACGHIEIYAKLHHLLCDWLQKT
Ga0210400_100093642	3300021170	Soil	MASEQCQHSKRISGLVKLDFARPDDLDGPVYSGAVAVGVCEVCGHIELYAKLHHLQGDWLRKT
Ga0210400_100698571	3300021170	Soil	MAPEQCQHPKRVSGVVKLDFTRPDAPDGPTYSGAVSAGICEECGHIELYAKLHHLLGDWLRKT
Ga0210405_100470124	3300021171	Soil	MASEPCQHSNRVNGLVKLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQKT
Ga0210396_100312853	3300021180	Soil	MAPEPCQHFRRITGVVRLDFARPDAVDGPIYSGAVSVGVCEECGHIELYAKLHHLLGDWLRKT
Ga0210388_118100011	3300021181	Soil	MASESCEHSNRVSGLVRFDFARREAPDGPTYSGAVSAGVCEECGHIELYAKLPNLLRDWLMKA
Ga0210386_117655681	3300021406	Soil	MASEPCQHSKRVNGLVRLDFARQDAPDGSTYSGAVSAGICEVCGHIELY
Ga0210383_108601243	3300021407	Soil	MASEPFQHSKRVSGLVRLDFARSEAPDGPTYSGAVSAGVCEECGHVEVYAKLHRLLCDWLLKT
Ga0210394_100714642	3300021420	Soil	MASEPCQHSKRVSGLVRLDFARQSSPEGPIYSGAVSASVCEDCGHIELYAKTHHLLSDWLHKT
Ga0210384_102231031	3300021432	Soil	GGEMAPEPCQHFRRITGVVRLDFARPDAVDGPIYSGAVSVGVCEECGHIELYAKLHHLLGDWLRKT
Ga0210384_110501822	3300021432	Soil	MAPEPCQHSKRVSGVVKLDFARPDAPDGPMYSEAVSVGVCEKCGHIELYAKLHHLLSDWLRKT
Ga0210391_100233393	3300021433	Soil	MASESCEHSNRVSGLVRLDFARREAPDGPTYSGAVSAGVCEECGHIELYAKLPNLLRDWLMKA
Ga0210391_106743531	3300021433	Soil	MASEPCQHSNRVSGLVRLDFARKDAPEGPMYSGAVSASVCEDCGHIEL
Ga0210390_106362951	3300021474	Soil	MAPEPCKHSRRVSGVVKLDFVRPDALDGPTYSGAVSVGVCEECGHVELYAKLHHLLGDWLRKA
Ga0210402_118946341	3300021478	Soil	MASEQCQHSNRISSLVRLDFARQDAPDGPTYSGVVSAGVCEECGHIEIYAKLHHLLCDWLLKT
Ga0210410_105922312	3300021479	Soil	LVRLDFARQDAPDGSTYSGAVSAGICEVCGHIELYGKLHHLLCDWLQKT
Ga0210409_100247273	3300021559	Soil	MASEPCQHSNRVNGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQRT
Ga0126371_127738561	3300021560	Tropical Forest Soil	MAAEQCQHSNRVRGLVRFDFTRQDAPDGPAYSGAVSVGICEQCGHVEMYAKLHHLLCDWLRKS
Ga0242647_10078041	3300022505	Soil	MASEPCQHSNRVSGLVRLDFARQNAPEGPMYSGAVSASVCEDCGHVELYAKTHHLLSDWLQKT
Ga0242649_10554301	3300022509	Soil	LFMPCCPVAVRGRMAAEQCQHSKRVRGLVRLDFARQDAPDGPTYSGAVSVGVCEECGHMELYGKLHRLLCDWLRKS
Ga0209010_1000007216	3300027370	Forest Soil	MASEPCQHSNRVSGLVRLDFARQDAPEGPMYSGAVSASVCEDCGHIELYAKIHHLLCDWLGQA
Ga0209219_10010694	3300027565	Forest Soil	MSFEPCQHPNRVNGRVRLDFARQDAAEGPVYSGTVSVAICEDCGYIELHAEFQHLLCDWLRRA
Ga0208042_10762392	3300027568	Peatlands Soil	MASEPCQHSKRVSGLVRLDFARPEAPDGPGYTGAVSAGVCEECGHIELYAKLHHLLGDWL
Ga0209733_11597392	3300027591	Forest Soil	MSFEPCQHPNRVNGRVRLDFARQEAAEGPVYSGTVSVAICEDCGYIELHAEFQHLLCDWLRRA
Ga0208324_10027253	3300027604	Peatlands Soil	MASEQCQHSKRVSGVVRLDFARPDALDGPMYSGAVSVGVCEECGHIELYAKLHHLLGDWLRKT
Ga0208324_10160623	3300027604	Peatlands Soil	MASEPCQHSNRVNGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGNLHHLLCDWLQKT
Ga0208324_11520581	3300027604	Peatlands Soil	MAPEPCQHFKRVSGVVTLDFARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLQKT
Ga0208827_11547441	3300027641	Peatlands Soil	WIQNRVRRTSRLPRGGEMAPEPCQHSKRVSGVVKLDFTRPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT
Ga0209736_10285942	3300027660	Forest Soil	MAPEPCQHSKRVSGIVKLDFARPDALDGPMYSGTVSVGVCEECGHIELYAKLHHLLSDWLHKT
Ga0209118_100019213	3300027674	Forest Soil	MVAEQCQHSNKVSGLVRLDYARQDAPDGPVYSGTVSVGVCEECGHIELYAKLHHLLCDWLRKT
Ga0209118_100020810	3300027674	Forest Soil	MIAEQCRHSNRISGVVKVDLARQDVPDGPVYSGAVSVGICEECGHIELYAKLHHLLCDWLRKS
Ga0208696_10231102	3300027696	Peatlands Soil	MASEPCQHSNRVNGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYAKLHHLLGDWLRKT
Ga0209248_100093131	3300027729	Bog Forest Soil	MASEPCQHTNSVSGLLRLDFARQNAPEGPIYSGAVSASVCEDCGHIELYAKTHHLLSDWLQKT
Ga0209274_100380072	3300027853	Soil	MASEPCQHTNRVSGLLRLDFARQNAPEGPMYSGAVSASVCEDCGHIELYAKMHHLLSDWLQKT
Ga0209274_101763351	3300027853	Soil	RVSGLVRLDFARQNAPEGPMYSGAVSASVCEDCGHIELYAKTHHLLSDWLHKT
Ga0209693_100169863	3300027855	Soil	MASEPCQHSNRVNGLVKLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQRT
Ga0209167_101107101	3300027867	Surface Soil	MASEPCQHSNRINGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHH
Ga0209169_100613402	3300027879	Soil	SESCEHSNRVSGLVRFDFARREAPDGPTYSGAVSAGVCEECGHIELYAKLPNLLRDWLMK
Ga0209415_105563232	3300027905	Peatlands Soil	LDSENRVRRISRLPRGGKMAPEPCQHFKRVSGVVTLDFALPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLQKT
Ga0308309_100606752	3300028906	Soil	MASEPCKHSNRVNGLVKLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLQHLLCDWLQKT
Ga0308309_107958541	3300028906	Soil	ASEPCQHSNRVNGLVKLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLCDWLQKT
Ga0308309_115197181	3300028906	Soil	MASEPCQHSNRVNGLVRLDFARQDAPDGSTYSGAVSAGICEACGHIELYGKLHHLLC
Ga0316363_102963861	3300030659	Peatlands Soil	MAPEPCQHFKRVSGVVTLDFARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGAWLQKT
Ga0310039_101285672	3300030706	Peatlands Soil	MASEPCQHSKRVSGLVRLDFARPEAPDGPAYTGAVSAGVCEECGHIEMYAKLHHLLCDWLQKT
Ga0310038_102464381	3300030707	Peatlands Soil	VSGVVKLDFTRPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLRKT
Ga0265760_102050992	3300031090	Soil	MASEPCQHSNRVSGLVRLDFARQNAPEGPIYSGAVSASVCEDCGHIELYAKTHHLLS
Ga0265760_102294191	3300031090	Soil	MAPAPCEHSKRVSGVVRLDFARPEALDGPMYSGVVSVGVCEDCGHIELYAKLHHLLRDWLRKA
Ga0310686_1001275724	3300031708	Soil	MASEQCQHSNRVSGLVRLDFARQDAPDGSTYSGTVSASICEACGHIELYGKLHHLLCDWLRKT
Ga0310686_1006931861	3300031708	Soil	MASEPCQHSNRVSGLVRLDFARQNAPEGPIYSGAVSASVCEDCGHIELYAKTHHLLSDWLHKT
Ga0307474_104947222	3300031718	Hardwood Forest Soil	MAPEPCEHSKRVSGVVKLDFARPDAVDGPVYSGAVSVGVCEDCGHVELYAKLHHLLGDWLRKA
Ga0307475_102670532	3300031754	Hardwood Forest Soil	MAPEPCEHSRRVSGVVRLDFARPDALDGPMYSGAVSVGVCEECGHIELYAKLHHLLGDWLRKA
Ga0307475_107663851	3300031754	Hardwood Forest Soil	MAPAPCEHTRRVSGVVRLDFARPNALDGPMYSGAVSVGVCEECGHVELYAQLHHLLGDWLRKA
Ga0307479_116653762	3300031962	Hardwood Forest Soil	ANVVSNRLPRGGKMAPEPCEHSKRVSGVVRLDFARPDAVDGPVYSGAVSVGVCEECGHIELYAKLHRLLGDWLRKT
Ga0311301_100242655	3300032160	Peatlands Soil	MAPEPCQHFKRVSGVVTLHVARPDALDGPIYSGAVSVGVCEDCGHIELYAKLHHLLGDWLQKT
Ga0348332_100589532	3300032515	Plant Litter	MASEPCQHSKRVSGLVRLDFARPEAPDGPAYTGAVSAGVCEDCGHIEMYAKLHHLLCDWLQKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083009

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences