Metagenome / Metatranscriptome Family F083036

Basic Information
Family ID	F083036
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	47 residues
Representative Sequence	LPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Number of Associated Samples	94
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	16.67 %
% of genes near scaffold ends (potentially truncated)	4.42 %
% of genes from short scaffolds (< 2000 bps)	5.31 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Unclassified (97.345 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.584 % of family members)
Environment Ontology (ENVO)	Unclassified (27.434 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.982 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.05% β-sheet: 0.00% Coil/Unstructured: 45.95%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF05532	CsbD	1.77
PF00155	Aminotran_1_2	1.77
PF00296	Bac_luciferase	1.77
PF13358	DDE_3	1.77
PF01979	Amidohydro_1	0.88
PF04075	F420H2_quin_red	0.88
PF00903	Glyoxalase	0.88
PF07681	DoxX	0.88
PF08837	DUF1810	0.88
PF00535	Glycos_transf_2	0.88
PF05406	WGR	0.88
PF13565	HTH_32	0.88
PF13701	DDE_Tnp_1_4	0.88
PF01751	Toprim	0.88
PF09929	DUF2161	0.88
PF08309	LVIVD	0.88
PF13280	WYL	0.88
PF13518	HTH_28	0.88
PF00848	Ring_hydroxyl_A	0.88
PF02586	SRAP	0.88
PF01717	Meth_synt_2	0.88
PF11249	DUF3047	0.88
PF01694	Rhomboid	0.88
PF00872	Transposase_mut	0.88
PF00595	PDZ	0.88
PF03372	Exo_endo_phos	0.88
PF00313	CSD	0.88
PF00239	Resolvase	0.88
PF01594	AI-2E_transport	0.88
PF09650	PHA_gran_rgn	0.88
PF11901	DUF3421	0.88
PF13751	DDE_Tnp_1_6	0.88
PF00753	Lactamase_B	0.88
PF07993	NAD_binding_4	0.88
PF03171	2OG-FeII_Oxy	0.88
PF08840	BAAT_C	0.88
PF01244	Peptidase_M19	0.88
PF13538	UvrD_C_2	0.88
PF01527	HTH_Tnp_1	0.88
PF01476	LysM	0.88
PF01425	Amidase	0.88
PF14863	Alkyl_sulf_dimr	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.77
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.77
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	1.77
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.88
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.88
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.88
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.88
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.88
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.88
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.88
COG3831	WGR domain, predicted DNA-binding domain in MolR	Transcription [K]	0.88
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.88
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.88
COG5579	Uncharacterized conserved protein, DUF1810 family	Function unknown [S]	0.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
All Organisms	root	All Organisms	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
cellular organisms	root	All Organisms → cellular organisms	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.35 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.77 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005167\|Ga0066672_10094605	Not Available	1812	Open in IMG/M
3300009143\|Ga0099792_10189641	Not Available	1162	Open in IMG/M
3300012203\|Ga0137399_10580370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	942	Open in IMG/M
3300020580\|Ga0210403_10780858	Not Available	760	Open in IMG/M
3300025916\|Ga0207663_10609977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858	Open in IMG/M
3300025941\|Ga0207711_11891936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.73%
Host-Associated	Host-Associated	13.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.84%
Plants	Host-Associated → Plants	13.27%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.31%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.91%
Loam	Environmental → Terrestrial → Soil → Loam	15.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.16%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010113	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101402132	3300003505	Forest Soil	LPFNWGSKAESALRLFGADRALLLIEGVAIAKVAMLGIAYFFRRRRQPML*
Ga0058899_101158021	3300004631	Forest Soil	TQLLLPDWASKAESALRIFGADRALLLVEGIAMAKLIMLAIAYPFRRGR*
Ga0066672_100946053	3300005167	Soil	LTTVADENLLLIKTVTRSLPFDWGSKIESALRIFGADRALLLIESIALAKLIMLGIAYPFRRRR*
Ga0066677_104358822	3300005171	Soil	PPDWASKTESALRMFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP*
Ga0066683_103030511	3300005172	Soil	LPLDWSSNVESAVRIFGADRALLLIEGVALAKFIMLAVAHPSAAARNR
Ga0066684_106245931	3300005179	Soil	KVESALRIFGADRALLLIEGVAVAKLILLSLAYPFRGPRP*
Ga0066388_1014642363	3300005332	Tropical Forest Soil	AADANLQLIKIVTGKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR*
Ga0070667_1010403201	3300005367	Switchgrass Rhizosphere	ASKTESALRIFGADRALLLVEGIALAKLIMLGVAQPFRRRRP*
Ga0070713_1000961035	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0070710_104942861	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LTQLLPPDWASKAESALRIFGADRALLLVEGIALAKLIMLAIAYPFRRGR*
Ga0070681_105841542	3300005458	Corn Rhizosphere	WASRVESALRIFGADRALLLVEGIALAKIIMLSLAYPFRRRS*
Ga0070672_1016415752	3300005543	Miscanthus Rhizosphere	LPRDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR*
Ga0066700_106116081	3300005559	Soil	SKIESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRRR*
Ga0066670_108171821	3300005560	Soil	IKTVSRFLPFDWGGKVESALRIFGADRALLLIESVALAKLMMLGVAYPFRRDRP*
Ga0066705_109697971	3300005569	Soil	ADGNLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR
Ga0066708_108844632	3300005576	Soil	FDWGSKIESALRIFGADRALLLIESVALAKLIMLGIAYPLRRRR*
Ga0066708_110173561	3300005576	Soil	DENLLLIKTVTRSLPFDWGSKIESALRIFGADRALLLIESIALAKLIMLGIAYPFRRRR*
Ga0068864_1010734562	3300005618	Switchgrass Rhizosphere	LDWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR*
Ga0068866_105110731	3300005718	Miscanthus Rhizosphere	RDWSSKVESALRIFGADRALLLVEAVAVAKLVMLGVAYPFRRR*
Ga0066903_1007023551	3300005764	Tropical Forest Soil	SALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR*
Ga0066903_1085250923	3300005764	Tropical Forest Soil	TRVLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRRRRP*
Ga0068863_1012934231	3300005841	Switchgrass Rhizosphere	PAHWASKTESALRIFGADRALLLVEGIAVAKLVLLAVAQPFRRRRP*
Ga0068863_1026348361	3300005841	Switchgrass Rhizosphere	REITRLLPLDWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR*
Ga0066651_100994801	3300006031	Soil	LPLDWASKVESALRIFGADRALLLIEGVAVAKLIMLSLAFSFRRFGR*
Ga0070712_1012019591	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLVMLAIAYPFRRGR*
Ga0070765_1022608902	3300006176	Soil	DLLKTVTGTLPPDWGSKIESALRIFGADRALLLIESVVVAKAILLGIAYPFRRRQPMP*
Ga0075425_1027935142	3300006854	Populus Rhizosphere	TRLLPRDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR*
Ga0075434_1003517721	3300006871	Populus Rhizosphere	IKTVTGLLPLDLASKAESALRIFGADRALLLIEGVAVAKLILLALAHPFRRFRP*
Ga0079219_105379631	3300006954	Agricultural Soil	LPFDWGKKVESALRIFGADRALLLIEGVAFAKVIMLGFAYPFRRRR*
Ga0066709_1032419871	3300009137	Grasslands Soil	AESALRIFGADRALLLVEAIALAKLIMLAVAYPFRRGR*
Ga0099792_100668911	3300009143	Vadose Zone Soil	PDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0099792_101896412	3300009143	Vadose Zone Soil	RIIKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0126380_100472361	3300010043	Tropical Forest Soil	NLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP*
Ga0126373_111720811	3300010048	Tropical Forest Soil	SKVESALRIFGADRALLLIEGVAIAKVVMLSIAYPFRRRR*
Ga0127444_10641321	3300010113	Grasslands Soil	SKVESALRIFGADRALLLMEGVAVAKLVMLSLAYPFRGFRR*
Ga0134063_103735301	3300010335	Grasslands Soil	DWVSKVESALRIFGADRALLLMEGVAVAKLIMLSLAYPFRGFRL*
Ga0126378_122583772	3300010361	Tropical Forest Soil	GSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR*
Ga0126378_131900232	3300010361	Tropical Forest Soil	DWGSKIESALRIFGADRALLLIEGVAIAKVVMLGLAYPFRRRR*
Ga0126379_101370873	3300010366	Tropical Forest Soil	WASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0126379_109957982	3300010366	Tropical Forest Soil	DANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP
Ga0126381_1005818286	3300010376	Tropical Forest Soil	TSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRGR*
Ga0126381_1031594401	3300010376	Tropical Forest Soil	ADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLSIAYPFRRRR
Ga0126381_1033055563	3300010376	Tropical Forest Soil	ADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLSTAYPFRRRR
Ga0126381_1037603021	3300010376	Tropical Forest Soil	TGKLPFDWGSKVESALRIFGADRALLLIEGVAIAKIVMLGFAYPFRRRR*
Ga0126381_1039223751	3300010376	Tropical Forest Soil	KIVTSKLPFDWGSKIESALRIFGADRALLLIEGVAIAKIVMLGIAYPFRRRR*
Ga0126381_1044326071	3300010376	Tropical Forest Soil	KLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP*
Ga0126383_123631681	3300010398	Tropical Forest Soil	LPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRHRRP*
Ga0126383_129380551	3300010398	Tropical Forest Soil	ADANLQLIKIVTSKLPFDWGSKIESALRIFGADRAVLLIEGVAIAKVVMLGIAYPFRPRR
Ga0134127_112729432	3300010399	Terrestrial Soil	ENLRLIKEITQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLLMLAIAYPFRRRIR*
Ga0124850_10644791	3300010863	Tropical Forest Soil	PFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR*
Ga0137388_108090371	3300012189	Vadose Zone Soil	WASKTESALRMFGADRALLLIEGVAIAKLIMLGIAQPFRRRRP*
Ga0137399_103505262	3300012203	Vadose Zone Soil	VIAAPASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137399_105803703	3300012203	Vadose Zone Soil	TSLLPLDWPSKVESVLRILGADRALLLIEGVAAAKIIMLSLAYPFRRPRP*
Ga0137370_101054153	3300012285	Vadose Zone Soil	TKLLPLDWASKVESALRIFGADRALLLIEGVAVAKLIMLSLAFSFRRFGR*
Ga0137398_100682894	3300012683	Vadose Zone Soil	VESALRIFGADRALLLVEGIVIAKVVMLGIAHPFRHRRP*
Ga0137395_109118252	3300012917	Vadose Zone Soil	DWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137394_104806131	3300012922	Vadose Zone Soil	TQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137419_116312192	3300012925	Vadose Zone Soil	PPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR*
Ga0137410_116470951	3300012944	Vadose Zone Soil	WASKTESALRIFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP*
Ga0163162_134095461	3300013306	Switchgrass Rhizosphere	DWASKAESALRIFGADRALLLVESVALAKFIMLAVAYPFRRKR*
Ga0157375_106442891	3300013308	Miscanthus Rhizosphere	RDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR*
Ga0182008_105374071	3300014497	Rhizosphere	DWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR*
Ga0157379_121125911	3300014968	Switchgrass Rhizosphere	NLRLIKAVTQQLPPDWASKTESALRIFGADRALLLIEGVAIAKLVMLGLAYPFRRQRG*
Ga0137420_10850851	3300015054	Vadose Zone Soil	ESVLRILGADRALLLIEGVAAAKIIMLSLAYPFRRPRP*
Ga0137420_12010522	3300015054	Vadose Zone Soil	VSCPPDWASKTESALRIFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP*
Ga0132256_1039008921	3300015372	Arabidopsis Rhizosphere	DWASKTESALRIFGADRALLLVEGIALAKLIMLGVAQPFRRRRP*
Ga0182041_109780081	3300016294	Soil	SALRIFGADRALLLVEGVALAKLIMLGIAQPFRRGRPWRRN
Ga0182032_112461291	3300016357	Soil	IKIITSKLPFDWGSKVESALRIFGADRALLLIEDVAIAKVVMLGIAYPFRRRR
Ga0190272_133236451	3300018429	Soil	ESALRIYGADRALLLIEGVALAKLLMLAVAYPFRRRH
Ga0066655_112528541	3300018431	Grasslands Soil	KTESALRMFGADRALLLVEGVAVTKLIMLGIAQPFRRRRP
Ga0066662_109119201	3300018468	Grasslands Soil	DWASKAESAFRNFGADRALLLVEGIAIAKLIMLAVAYPFRRGR
Ga0193751_10336604	3300019888	Soil	LPVDWGSKVESALRIFGADRALLLVEGIVIAKVVMLGIAHPFRHRRP
Ga0210403_107808581	3300020580	Soil	NLRIIKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210399_110408413	3300020581	Soil	AESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210401_108369451	3300020583	Soil	SALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210400_101711063	3300021170	Soil	DWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0210388_114441062	3300021181	Soil	LPFYWGSKVESALRIFGADRALLLIEGVAIAKIIMLGIALLFRRRRR
Ga0210393_103662073	3300021401	Soil	ASKTESALRMFGADRALLLVEGVAVAKLIMLGIAQPFRRRRP
Ga0210384_109837612	3300021432	Soil	LLPPDWASKAESALRIFGADRALLLVEGIAIAKIIMLAIAYPFRRGR
Ga0210391_107014302	3300021433	Soil	WGSKIESALRIFGADRALLLIESVVVAKAILLGIAYPFRRRQPMP
Ga0210390_103710391	3300021474	Soil	LPFNWGSKAESALRLFGADRALLLIEGVAIAKVAMLGIAYFFRRCRQPML
Ga0210410_108757242	3300021479	Soil	LPFNWGSKAESALRLFGADRALLLIEGVAIAKVAMLGIAYFFRRRRQPML
Ga0126371_108289401	3300021560	Tropical Forest Soil	IVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLSIAYPFRRRR
Ga0126371_122562661	3300021560	Tropical Forest Soil	KIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAITKVVMLGIAYPFRRRG
Ga0242668_10771301	3300022529	Soil	IKTLTQLLPPDWASKAESGLRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0207692_102331422	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ALRIFGADRALLLIEGVAVAKLILLALAHPFRRFRP
Ga0207692_106299342	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ESACRIFGADRALLLVEGIAIAKLIMLAVAYPFRRGR
Ga0207692_106526341	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	SALRIFGADRALLLVEGIALAKLIMLAIAYPFRRGR
Ga0207707_114246481	3300025912	Corn Rhizosphere	WASRVESALRIFGADRALLLVEGIALAKIIMLSLAYPFRRRS
Ga0207663_106099771	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	WASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0207711_118919361	3300025941	Switchgrass Rhizosphere	LIKEITRLLPRDWSSKVESALRIFGADRALLLVEAVAVAKLLMLGVAYPFRRR
Ga0207676_122078151	3300026095	Switchgrass Rhizosphere	LDWASKSESALRMFGADRALLLIEGVALAKLLMLAVAYPFRRRR
Ga0209581_12259961	3300027706	Surface Soil	PFDWGSKAESALRIFGADRALLLVEGIGVAKLIMLAMAHPFRRSR
Ga0209656_104569172	3300027812	Bog Forest Soil	LPFDWGSKAESALRLFGADRALLLIEAIGIAKLVMLGIAHPFRRRP
Ga0209488_101122163	3300027903	Vadose Zone Soil	IIKTLTQLLPPDWASKAESALRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0308309_102458811	3300028906	Soil	AESAFRIFGADRALLLVEGIAIAKLIMLAIAYPFRRGR
Ga0318541_106155121	3300031545	Soil	DWASKTESALRIFGADRALLLVEGVALAKLIMLGIAQPFRRRRS
Ga0310887_107336011	3300031547	Soil	TRLLPPDWASKSESALRIFGADRALLLIEGVALAKLLMLAVAYPFRRRRLSDF
Ga0318561_102751783	3300031679	Soil	AQSGGKTESALRIFGADRALLLVEGVALAKLIMLGIAQPFRRGRPWRRN
Ga0318561_105230811	3300031679	Soil	QLIKFVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0318494_102143842	3300031751	Soil	FGADRALLLVEGVALAKLIMLGIAQPFRRRRPWRRN
Ga0310917_105308561	3300031833	Soil	WGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0318520_110220131	3300031897	Soil	IKTITRVLPFDWGSKVESALRIFGADRALLLIEGVVIAKVIMLSIAYPFRRRQP
Ga0306923_104537403	3300031910	Soil	ADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0306921_122301281	3300031912	Soil	ESALRIFGADRALLLVEGVALAKLIMLGIAQPFRRRRS
Ga0310916_110449842	3300031942	Soil	AAADANLQLIKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0310910_109186011	3300031946	Soil	SALRIFGADRALLLVEGVALAKLIMLGIAQPFRRRRS
Ga0310911_104370952	3300032035	Soil	KIVTGKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGFAYPFRRRR
Ga0318533_100543375	3300032059	Soil	IKIVTSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0306924_109229072	3300032076	Soil	LQLIKIVTGKLPFEWGSKVESALRIFGADRALLLIEGVALAKFAMLGFAYPFRRRR
Ga0306924_119698262	3300032076	Soil	LPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR
Ga0307470_106447191	3300032174	Hardwood Forest Soil	FDWPSKIESALRIFGADRALLLIEAVAVAKLIMLSFAYPFRRPRP
Ga0306920_1041368001	3300032261	Soil	IKIITSKLPFDWGSKVESALRIFGADRALLLIEGVAIAKVVMLGIAYPFRRRR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083036

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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