Metagenome / Metatranscriptome Family F083059

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083059
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	47 residues
Representative Sequence	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSY
Number of Associated Samples	77
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	96.46 %
% of genes from short scaffolds (< 2000 bps)	95.58 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.912 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.168 % of family members)
Environment Ontology (ENVO)	Unclassified (59.292 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.752 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.41% β-sheet: 28.57% Coil/Unstructured: 51.02%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04392	ABC_sub_bind	34.51
PF07758	DUF1614	1.77
PF13356	Arm-DNA-bind_3	0.88
PF03401	TctC	0.88
PF00033	Cytochrome_B	0.88
PF05231	MASE1	0.88
PF12599	DUF3768	0.88
PF08734	GYD	0.88
PF00724	Oxidored_FMN	0.88
PF01494	FAD_binding_3	0.88
PF13379	NMT1_2	0.88
PF05494	MlaC	0.88
PF13936	HTH_38	0.88
PF02518	HATPase_c	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	34.51
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.77
COG4089	Uncharacterized membrane protein	Function unknown [S]	1.77
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.88
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.88
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.88
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.88
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.88
COG1290	Cytochrome b subunit of the bc complex	Energy production and conversion [C]	0.88
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.88
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.88
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.88
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.88
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.91 %
Unclassified	root	N/A	30.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.91 %
Unclassified	root	N/A	30.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.91 %
Unclassified	root	N/A	30.09 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	61.95 %
Unclassified	root	N/A	30.09 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	52.21 %
Unclassified	root	N/A	30.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	27.43 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.54 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.77 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.62 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.88 %
Ralstonia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia	0.88 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.88 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.88 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.09 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	3.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Hyphomicrobium sp. 32-62-53	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 32-62-53	0.88 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	0.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
Ralstonia solanacearum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	0.88 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10044820	Not Available	1001	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10115152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	563	Open in IMG/M
3300004633\|Ga0066395_10952668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Ralstonia → Ralstonia solanacearum	522	Open in IMG/M
3300005178\|Ga0066688_10885403	Not Available	552	Open in IMG/M
3300005332\|Ga0066388_100297867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2257	Open in IMG/M
3300005332\|Ga0066388_100542653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1793	Open in IMG/M
3300005332\|Ga0066388_101088997	All Organisms → cellular organisms → Bacteria → Proteobacteria	1351	Open in IMG/M
3300005332\|Ga0066388_102724158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300005332\|Ga0066388_105374655	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300005332\|Ga0066388_106975704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	568	Open in IMG/M
3300005332\|Ga0066388_108822623	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300005713\|Ga0066905_100272133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1314	Open in IMG/M
3300005713\|Ga0066905_100410602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1101	Open in IMG/M
3300005713\|Ga0066905_100502420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1008	Open in IMG/M
3300005764\|Ga0066903_101193144	Not Available	1412	Open in IMG/M
3300005764\|Ga0066903_104444195	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300005764\|Ga0066903_105000431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	703	Open in IMG/M
3300005764\|Ga0066903_106285593	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300005764\|Ga0066903_107186523	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300005764\|Ga0066903_108367020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300006175\|Ga0070712_100291102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1318	Open in IMG/M
3300006604\|Ga0074060_10000038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1023	Open in IMG/M
3300009792\|Ga0126374_11132603	Not Available	622	Open in IMG/M
3300010046\|Ga0126384_11212214	Not Available	696	Open in IMG/M
3300010046\|Ga0126384_12066916	Not Available	546	Open in IMG/M
3300010047\|Ga0126382_11782380	Not Available	578	Open in IMG/M
3300010358\|Ga0126370_10758970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	860	Open in IMG/M
3300010366\|Ga0126379_11406847	Not Available	803	Open in IMG/M
3300010398\|Ga0126383_12716265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300010398\|Ga0126383_12730441	Not Available	576	Open in IMG/M
3300012202\|Ga0137363_10165868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1748	Open in IMG/M
3300012205\|Ga0137362_10812023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	801	Open in IMG/M
3300012362\|Ga0137361_10747510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	892	Open in IMG/M
3300012363\|Ga0137390_10871232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. 32-62-53	856	Open in IMG/M
3300012469\|Ga0150984_105184671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300012917\|Ga0137395_10861127	Not Available	656	Open in IMG/M
3300012948\|Ga0126375_10960894	Not Available	692	Open in IMG/M
3300014326\|Ga0157380_13090329	Not Available	531	Open in IMG/M
3300016270\|Ga0182036_10971168	Not Available	699	Open in IMG/M
3300016294\|Ga0182041_10042652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3009	Open in IMG/M
3300016319\|Ga0182033_11315861	Not Available	649	Open in IMG/M
3300016341\|Ga0182035_11622136	Not Available	584	Open in IMG/M
3300016357\|Ga0182032_10043570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2859	Open in IMG/M
3300016357\|Ga0182032_10554479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	951	Open in IMG/M
3300016357\|Ga0182032_11156627	Not Available	665	Open in IMG/M
3300016371\|Ga0182034_10655935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	889	Open in IMG/M
3300016387\|Ga0182040_10551836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	927	Open in IMG/M
3300016422\|Ga0182039_12103733	Not Available	520	Open in IMG/M
3300016445\|Ga0182038_10227430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	1486	Open in IMG/M
3300020579\|Ga0210407_10895969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300021432\|Ga0210384_11200937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	663	Open in IMG/M
3300021560\|Ga0126371_10441801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1446	Open in IMG/M
3300024347\|Ga0179591_1193561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3365	Open in IMG/M
3300026296\|Ga0209235_1141005	Not Available	978	Open in IMG/M
3300027654\|Ga0209799_1025650	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300028884\|Ga0307308_10172314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1036	Open in IMG/M
3300031545\|Ga0318541_10705110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	563	Open in IMG/M
3300031546\|Ga0318538_10225729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1003	Open in IMG/M
3300031573\|Ga0310915_10130976	All Organisms → cellular organisms → Bacteria	1720	Open in IMG/M
3300031640\|Ga0318555_10209512	Not Available	1051	Open in IMG/M
3300031668\|Ga0318542_10368910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	739	Open in IMG/M
3300031681\|Ga0318572_10167518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1274	Open in IMG/M
3300031681\|Ga0318572_10679096	Not Available	613	Open in IMG/M
3300031681\|Ga0318572_10792745	Not Available	563	Open in IMG/M
3300031682\|Ga0318560_10064319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1837	Open in IMG/M
3300031723\|Ga0318493_10149346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1208	Open in IMG/M
3300031744\|Ga0306918_10054325	All Organisms → cellular organisms → Bacteria → Proteobacteria	2675	Open in IMG/M
3300031744\|Ga0306918_10675669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808	Open in IMG/M
3300031744\|Ga0306918_10950333	Not Available	668	Open in IMG/M
3300031747\|Ga0318502_10169617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1252	Open in IMG/M
3300031748\|Ga0318492_10656870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300031748\|Ga0318492_10820438	Not Available	501	Open in IMG/M
3300031763\|Ga0318537_10090627	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300031778\|Ga0318498_10123179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1179	Open in IMG/M
3300031781\|Ga0318547_11015793	Not Available	518	Open in IMG/M
3300031782\|Ga0318552_10280127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	847	Open in IMG/M
3300031798\|Ga0318523_10154753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1140	Open in IMG/M
3300031799\|Ga0318565_10125885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1238	Open in IMG/M
3300031819\|Ga0318568_10635688	Not Available	664	Open in IMG/M
3300031819\|Ga0318568_10766145	Not Available	599	Open in IMG/M
3300031821\|Ga0318567_10134835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1357	Open in IMG/M
3300031833\|Ga0310917_10586154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300031879\|Ga0306919_10301574	Not Available	1216	Open in IMG/M
3300031880\|Ga0318544_10035885	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300031897\|Ga0318520_10734858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	618	Open in IMG/M
3300031910\|Ga0306923_10540999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1313	Open in IMG/M
3300031910\|Ga0306923_11665624	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031912\|Ga0306921_10625841	Not Available	1242	Open in IMG/M
3300031941\|Ga0310912_10573390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	878	Open in IMG/M
3300031942\|Ga0310916_10608347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	928	Open in IMG/M
3300031942\|Ga0310916_11289322	Not Available	601	Open in IMG/M
3300031942\|Ga0310916_11639357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	521	Open in IMG/M
3300031945\|Ga0310913_10936772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300031946\|Ga0310910_10164661	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300031946\|Ga0310910_10447175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1025	Open in IMG/M
3300031946\|Ga0310910_11514862	Not Available	514	Open in IMG/M
3300031954\|Ga0306926_11476807	All Organisms → cellular organisms → Bacteria → Proteobacteria	785	Open in IMG/M
3300031954\|Ga0306926_11942753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	663	Open in IMG/M
3300031954\|Ga0306926_12131095	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031954\|Ga0306926_12136536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	625	Open in IMG/M
3300031959\|Ga0318530_10184637	Not Available	853	Open in IMG/M
3300032025\|Ga0318507_10452361	Not Available	559	Open in IMG/M
3300032035\|Ga0310911_10227750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1064	Open in IMG/M
3300032039\|Ga0318559_10396473	Not Available	643	Open in IMG/M
3300032051\|Ga0318532_10058568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1330	Open in IMG/M
3300032054\|Ga0318570_10096720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1285	Open in IMG/M
3300032054\|Ga0318570_10601745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300032076\|Ga0306924_12631394	Not Available	501	Open in IMG/M
3300032205\|Ga0307472_100645019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	943	Open in IMG/M
3300032261\|Ga0306920_100886288	All Organisms → cellular organisms → Bacteria → Proteobacteria	1305	Open in IMG/M
3300032261\|Ga0306920_101034190	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300032261\|Ga0306920_102597229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	694	Open in IMG/M
3300032261\|Ga0306920_103947265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.23%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.42%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.72%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_100448204	3300000793	Forest Soil	MRSVISALAGFVLAGSFAFAQPSDGRLRTINETATLRVAYRADSRPFSYVG
AF_2010_repII_A001DRAFT_101151523	3300000793	Forest Soil	MMRSAISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRTDSRPFSYVDDQGRPVG
Ga0066395_109526681	3300004633	Tropical Forest Soil	MAPIQPRGGAMMRSAISALAGFALAGSFAFAQPSDDRLRIIHETATLRVAYRTDSRPFSY
Ga0066688_108854031	3300005178	Soil	MRSAIFALAGLVLAGSPAVGQPFDGRLKIIHETATLRVAY
Ga0066388_1002978672	3300005332	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSYVDVDDQGRPVGYTIEL*
Ga0066388_1005426534	3300005332	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAYRADSR
Ga0066388_1010889972	3300005332	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVA*
Ga0066388_1027241582	3300005332	Tropical Forest Soil	MRSAISALAGLALAASFAFAQPSDSRLKIIHETATLRVAYRTD
Ga0066388_1053746551	3300005332	Tropical Forest Soil	MRSAISALAGFAMAGSFAFAFAQPSEGHLKIIHETATLRVAYRTDSRPFSYVDAQGR
Ga0066388_1069757041	3300005332	Tropical Forest Soil	MRFAISALAGFALVGSFALAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDDQGR
Ga0066388_1088226231	3300005332	Tropical Forest Soil	MMRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYADAQG
Ga0066905_1002721331	3300005713	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRIDSRPFSYVDAQGR
Ga0066905_1004106023	3300005713	Tropical Forest Soil	MRSAISALAGFALAGNFAFAQPSDGRLKIIHETATLRVAYRIDSRPFSYVDAQGR
Ga0066905_1005024203	3300005713	Tropical Forest Soil	MRSAIFALAGFALAGSFAFAQPSDGRLKIIHETATLRVAY
Ga0066903_1011931441	3300005764	Tropical Forest Soil	MRSVISAPAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPF
Ga0066903_1044441951	3300005764	Tropical Forest Soil	MRSAISALVGFALAGSFASAQPSDGRLKIIHETATLRVAYRTDSRPFSYVD
Ga0066903_1050004312	3300005764	Tropical Forest Soil	MRFAISALAGFALAGNFAFAQPSDGRLKIIHETATLRVAYRADSRPFSYVDAQGR
Ga0066903_1062855931	3300005764	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVD
Ga0066903_1071865233	3300005764	Tropical Forest Soil	MRSAISALAGLALAGSFAFAQPTDGRLKIIHETATLRIAYRTDSRPFSY
Ga0066903_1083670202	3300005764	Tropical Forest Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATIRVAHRIDS
Ga0070712_1002911021	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRSVISALASLALAASFAFAQPSDGRLKIIHETATLRVAYRTDSRPF
Ga0074060_100000383	3300006604	Soil	MRSAISAFAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDAQGRP
Ga0126374_111326031	3300009792	Tropical Forest Soil	MRSAIFALAGLALAGSFAFAQPTDGRLKIIHETATLRVAYRIDSRPFSYVD
Ga0126384_112122143	3300010046	Tropical Forest Soil	VMRSAISALAAFALAGSFALAQPSNGRLRTIHETATLRVAYRADSRPFSYVD
Ga0126384_120669162	3300010046	Tropical Forest Soil	MRSVISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVDDQG
Ga0126382_117823801	3300010047	Tropical Forest Soil	MRSAISALAGFALAGSLAFAQPRDGRLRTINETATIRVAYRADSRP
Ga0126370_107589703	3300010358	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRTDSR
Ga0126379_114068471	3300010366	Tropical Forest Soil	MRSAISALAGFALAGSFALAQPSDGRLRIIHETATLRVAYRTDSR
Ga0126383_127162651	3300010398	Tropical Forest Soil	MRSAISALAGLALAASFAFAQPSDSRLKIIHETATLRVA
Ga0126383_127304411	3300010398	Tropical Forest Soil	MRGGAVMRSAISALAGLAVAGSFAFAQPSDGRLKIIH
Ga0137363_101658684	3300012202	Vadose Zone Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRIDSRPF
Ga0137362_108120231	3300012205	Vadose Zone Soil	MRSAISALAGVALAGSFAFAQPSDGRLKIIHETATLRVAYRIDSRPFSYVD
Ga0137361_107475101	3300012362	Vadose Zone Soil	MRSAISVLAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRIDSRPF
Ga0137390_108712321	3300012363	Vadose Zone Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDA
Ga0150984_1051846712	3300012469	Avena Fatua Rhizosphere	MRPAISALAGLVLAGNLALAQPMDGRLKIIQETATLRVAYR
Ga0137395_108611271	3300012917	Vadose Zone Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRIDSRPFSYVD
Ga0126375_109608941	3300012948	Tropical Forest Soil	MRSVISALAGFALAGGFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVDDQGR
Ga0157380_130903292	3300014326	Switchgrass Rhizosphere	MRHAIIVLISTLLIGGWASAQPLEGRLRTIQETATLRVAYRQDSRPFSYLDA
Ga0182036_109711681	3300016270	Soil	MRSAISVLAVFVLAGSFAFAQPSDSRLKIIHETTTLRVAYRTDSRPLSYVDAQGR
Ga0182041_100426521	3300016294	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSYVD
Ga0182033_113158611	3300016319	Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSR
Ga0182035_116221363	3300016341	Soil	MRSAISALAGLALAGSFAFAQPSNGRLKIIHETATLRVAYRTDSRPFSYVD
Ga0182032_100435702	3300016357	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVA
Ga0182032_105544791	3300016357	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETAT
Ga0182032_111566271	3300016357	Soil	MRSAISALVGFALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFS
Ga0182034_106559353	3300016371	Soil	MRSVISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVDDQGRP
Ga0182040_105518363	3300016387	Soil	MRSAISALAGLALAGSFAFAQPSNGRLKIIHETATLRVAYRTDSRPFSYVDDQGRPVG
Ga0182039_121037331	3300016422	Soil	MRSVISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSY
Ga0182038_102274301	3300016445	Soil	MRSAISVLAGLALAGSFAFAQPSDSRLKIIHETTTLRVAYRTDSRP
Ga0210407_108959691	3300020579	Soil	MRSAIFALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRIDSRPFSYVDA
Ga0210384_112009371	3300021432	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRTDS
Ga0126371_104418012	3300021560	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPTDGRLKIIHETATL
Ga0179591_11935615	3300024347	Vadose Zone Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDAQGRPVAVTQSNFAKHSKIA
Ga0209235_11410052	3300026296	Grasslands Soil	MRSAIFALAGLVLAGSPAVGQPFDGRLKIIHETAT
Ga0209799_10256501	3300027654	Tropical Forest Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRADSRPFSYVDAQGRPV
Ga0307308_101723142	3300028884	Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRIAYRTDSR
Ga0318541_107051103	3300031545	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAYRADSRPFSYLD
Ga0318538_102257291	3300031546	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRTDSRPFSY
Ga0310915_101309761	3300031573	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAYRADSRP
Ga0318555_102095122	3300031640	Soil	MRSAISALVGFALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVD
Ga0318542_103689103	3300031668	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRTDSRPFSYVDAQGRT
Ga0318572_101675182	3300031681	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSY
Ga0318572_106790961	3300031681	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAYRADSRPFSY
Ga0318572_107927452	3300031681	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATL
Ga0318560_100643191	3300031682	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVD
Ga0318493_101493461	3300031723	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATIRVAYRTDSR
Ga0306918_100543251	3300031744	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIQETATIRVAYRA
Ga0306918_106756691	3300031744	Soil	MRSAISALAGFALVGSFAFAQPSDGRLRIIHETATLR
Ga0306918_109503331	3300031744	Soil	VMRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYR
Ga0318502_101696171	3300031747	Soil	MRSTISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSYVDNQGRPV
Ga0318492_106568701	3300031748	Soil	VMRSTISALASFALAGSFAFAQPSDGRLRIIHETATLRVAYRADSRPFSYVD
Ga0318492_108204381	3300031748	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSYVDAQG
Ga0318537_100906272	3300031763	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETAT
Ga0318498_101231793	3300031778	Soil	MRSTISALASFALAGSFAFAQPSDGRLRIIHETATL
Ga0318547_110157932	3300031781	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETAT
Ga0318552_102801271	3300031782	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRTDSRPFSYVDA
Ga0318523_101547531	3300031798	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRTDSRPFLYVDAQG
Ga0318565_101258852	3300031799	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRADSRAFS
Ga0318568_106356882	3300031819	Soil	VMRSVISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSY
Ga0318568_107661451	3300031819	Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYV
Ga0318567_101348353	3300031821	Soil	MRSTISALAGFALAGSFAFAQPSDGRLRIIHETAT
Ga0310917_105861542	3300031833	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLRVAYRA
Ga0306919_103015741	3300031879	Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDD
Ga0318544_100358854	3300031880	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAYRADSRPFSYL
Ga0318520_107348581	3300031897	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATI
Ga0306923_105409993	3300031910	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATIRVAYRTDSRP
Ga0306923_116656241	3300031910	Soil	MMRSAISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVDDQGR
Ga0306921_106258412	3300031912	Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDDQG
Ga0310912_105733902	3300031941	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATLRVAYRTDSRPFLYVDA
Ga0310916_106083473	3300031942	Soil	MRSAISALAGFALAGSFAFAQPSEGHLKIIHETATL
Ga0310916_112893221	3300031942	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIQETATIRVAYRADSRPFSYLDDQGRP
Ga0310916_116393573	3300031942	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATIRVAYRTDSRPFSY
Ga0310913_109367721	3300031945	Soil	MRSTISALASFALAGSFAFAQPSDGRLRIIHETATLRVAYRADSRPFSYVDDQG
Ga0310910_101646614	3300031946	Soil	VMRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAYR
Ga0310910_104471751	3300031946	Soil	VMRSAISALAGFALVGSFAFAQPSDGRLRIIHETA
Ga0310910_115148621	3300031946	Soil	MRSAIFALAGFALAGSFAFAQPSDGRLRIIHETATLRV
Ga0306926_114768071	3300031954	Soil	MRSAISALVGFALAGSFASAQPSDGRLKIIHETATLRVAYRTD
Ga0306926_119427533	3300031954	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDTRPFSYV
Ga0306926_121310951	3300031954	Soil	MMRSAISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYR
Ga0306926_121365361	3300031954	Soil	MRSTISALASFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSYVDD
Ga0318530_101846371	3300031959	Soil	MRSVISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVD
Ga0318507_104523612	3300032025	Soil	MRSAISALAGFALAGSFAFAQPSDGRLGIIHETATIRVA
Ga0310911_102277501	3300032035	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRTIHETATIRVAY
Ga0318559_103964732	3300032039	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRADSRPFSY
Ga0318532_100585684	3300032051	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATIRV
Ga0318570_100967201	3300032054	Soil	MRSAISALAGFALAGSFAFAQPSDGRLKIIHETATLR
Ga0318570_106017452	3300032054	Soil	VMRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFSYVDAQ
Ga0306924_126313941	3300032076	Soil	MRSAISALAGLALAGSFAFAQPSDGRLKIIHETATLRVAYRTDSRPFSYVDAQ
Ga0307472_1006450193	3300032205	Hardwood Forest Soil	MRSAISALAGFALAGSFAFAQPTDGHLKIIHETATLRVAYRTDSRPFSYVDAQG
Ga0306920_1008862884	3300032261	Soil	MRCAISALAGFALAGSFAFAQPTDGRLKIIHETATLRVAYRTDS
Ga0306920_1010341901	3300032261	Soil	MRSAISALAGFALAGSFAFAQPSDGRLRIIHETATLRVAYRTDSRPFS
Ga0306920_1025972291	3300032261	Soil	VMRSAISALAGFALAGSFAFAQPSDGRLRTIHETATLRVAYRADSRPFSYVDDQGRPV
Ga0306920_1039472651	3300032261	Soil	MMRSAISALAGFALAGSFAFAQPSDGRLRTIHETATL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083059

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences